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NMR SUITE 3.5 Installation Guide for Windows XP

1. How to install Apache Web server wiscvicccccssvescisccecsasssevevecoeseveccdecoosehsenssoece sti escdecsecguaynndvesestuvavcsecessubasebiees Configuration of Apache web Server 0 ecceeceeccesseesecseeeseceeaecaeceaecaeceseeeeneeeeenes Situation 1 no WWW server running Situation 2 Apache web server already running Situation 3 Switching from IIS to Apache web Server cccsessssessesceececseeeeeesseeaesceaeesceeceecnecaeeesneatees Situation 4 Running Apache web service while running IIS Secure Apache web service configuration Compiling AU programs scsccscsscssccsscscssscsessscescesscsecssesceesessesesseseessessoes Why does XWIN NMR need a compiler eee cee eeeceeeeeeeeeeeseeceeesaecaesaeeaeenaees 87 How can I use Microsoft Visual C if I Want to oo eee eesceeeceesseceeeeceneeenseeeneeenes 87 Problems with the default GNU compiler eee ceseeecesceeeeeeeeeeseeeeseeeeeeneeaes 88 Installing Exceed NFS Server sccsssscsssssscssssccssseccsssscssscesscsscessssssscssessscssees 89 NT Toolkit CD NT Toolkit 2 CD once cece eia erir E r e 89 Preparing for the NT Toolkit installation 0 0 cece eee eeeesecsecesecneceseeereneeeeenes 89 Installing the X Server Exceed Installation of Exceed 7 X ceceeeeeseeeeeetenees Configuring of Exceed Txt ssiidsites Selah ra ek di O aa O T E ERE O EEEE S 92 10 4 Installing NES Server meenen esate ovas ssecscevessbennc
2. Probe The current probe is lt 5 mm TXD 13C 1H D Z GRD Z3494 345 40 gt 5 mm TXI 31P 2 grad 12 El 5 mm TXI 13C 2 grad 13 10 mm 1H 14 10 mm Multinuclear inverse 15 10 mm 2H 16 10 mm 13C 17 10 mm 15N 18 10 mm 31P 19 10 mm QNP 1H 15N 13C 31P 20 10 mm Multinuclear 21 10 mm Multinuclear low freq 22 15 mm 13C 23 15 mm 15N 24 15 mm 31P 25 15 mm Multinuclear 26 20 mm 13C 27 20 mm 15N 28 20 mm 31P 29 20 mm Multinuclear 30 4 mm LC inverse 1H 13C Z grad 31 TXD 13C 1H D 2 GRD 23494 345 40 select the current probe click the button Define as current probe then click Exit e Continue with edprosol Pai ORTE MEE File Help Edit prosol parameters for Probe name 5 mm TKD 13 4HD Z GRD 2340445 40 a Solventis an a Nucleus iH Here you can enter two comment lines saved to the nuclei file Please select the logical channel C Fi F2 C F3 cr Global Standard parameters for 1H on channel F1 routed to amplifier A2 Standard parameters for 1H on channel F2 routed to amplifier A2 Description pulse length power level Description pulse length power level 90 deg transmitter P90 is 90 deg decoupler P90 0s 3 cpd PCPDP 108 7 cate cpd PCPDP ws 7 imbctime s pulselength power tovel bilev second cpd PLCPD2 tocsy spin lock proc ao 0 420 calc mix time s __ pulse length roesy spin lock proe 02 0 420 cate tocsy spin lock proc oo
3. all available drives will appear Choose the directory you want to backup Click the check box left of the direc tory to select the entire path for backup a tick will appear in the check box Choose the Backup media or file Click Start Backup A window Backup Job Information will open Click Start Backup Frequent backup of specific directories If you commonly use Ntbackup to back up a single folder you might want to cre ate a simple batch file Suppose you would like to make a daily backup of a direc tory 1 Choose the path of the file as describe above 170 Troubleshooting 2 Click Start Backup Backup Utility Untitled Job Edit Yiew Tools Help Welcome Restore and Manage Media Schedule Jobs Ea Click to select the check box for any drive folder or file that you want to back up Name O Y My Computer 22 a My Documents O 2 My Network Places O amp My Computer aO 3 Floppy A a As Local Disk C 0 2 DYD Drive D 1 Bruke NMR_Sui oO System State SAE My Documents Es mh My Network Places Backup options Normal backup Summary log Some file types excluded L Backup destination Backup media or file name amp Backup bkf 3 A window Backup Job Information will open Backup Job Information Backup description Set created 9 22 2003 at 4 29 PM If the media already contains backups Append th
4. unlnstallShield will remove the software Bruker Diskless 980701 from your computer Please wait while each of the following components is removed Uninstall completed Some elements could not be removed You should manually remove items related to the application Shared program files Standard program files Folder items Program folders Program directories Program registry entries Appendix 219 Please note that all the items with check marks have been worked on by the un installer If you would have just wiped out the directory with the application then the rest would still litter the system disk and command and control units Click OK to finish the job Note Sometimes you find that after an un install parts of the directory structure and some files are still in the original place where the application had resided That is done on purpose The idea is that you for example do not want to wipe out your precious license file just because you put on a new version of flexlm Or loose datasets in u data because the XWIN NMR version gets updated 21 3 Configure Input Focus Move With Mouse The input focus is the window or spot on your desktop that receives characters you type on your keyboard Under Windows the window whose title bar is col oured default blue is the window that has the input focus You can shift the input focus to another window by clicking on it once That wi
5. Control Panel Administrative Tools 2 Double click Services 3 A window Services will appear At least the following services should appear with status Started Bfs Bootparam Bruker FLEXIm License Server only if the PC has a local license If the license server is a remote machine the FLEXIm service has to be started only there Hummingbird Inetd Hummingbird NFS Server 149 150 Troubleshooting e Hummingbird Port Mapper e NuTCRACKER Service e Schedule Note that this list only contains the Services required for the NMR SUITE Several other Services are required for Windows XP and possibly for other software packages on your system If one or more of these services are not running e Reboot the computer and check again If rebooting does not solve the problem then proceed as follows If the NUTCRACKER Service bfs and or bootparam are not running e Re install XWIN NMR and DISKLESS see chapter 11 3 If the Hummingbird NFS Server and or Port Mapper are not running e Remove the NFS Server directory normally C Program Files NfsSrvr nt e Re install the NFS Server see chapter 10 4 6 Carefully check the NFS Server configuration see chapter 11 6 15 1 2 The Event Viewer If you have any problems on your Windows XP host it is always a good idea to look at possible Events which caused them Click Start Control Panel gt Administrative Tools Event Viewer A window Even
6. MKS Toolkit e In the upcoming window click on the field NutC4 Options e In the field Category select X Windows system settings e In the field X Server settings click on other and browse for the path of exceed exe default path is C Program Files Humming bird Connectivity 7 1I Exceed exceed exe 1 This means the XWIN NMR window will get the focus when you click on it 2 Otherwise you will always get a warning when closing XWIN NMR or any sub window Installing Exceed NFS Server e Click OK 10 4 Installing NFS Server IMPORTANT e before installing NFS you must configure TCP IP see chapter 5 1 e If your installation fails with following error message CreatThisService Createservice Error 997 Your network adapter has no link to the network Establish a link to the net work or install the NWlink IPX SPX NetBIOS Compatible Transport Protocol a Click Start Control Panel Network Connections Right click Local Area Connection xxx b Click Properties gt Install Protocol Add c The Select Network Protocol menu will appear after some sec onds Click NWlink gt OK d After some seconds the Properties menu will reappear Click Close Currently supported version of the NFS Server for Windows XP is 7 1 If this one is already installed you can skip this chapter If another version is installed remove it according the chapter 2 3 reboot the com puter and inst
7. Select one of these entries Type edg to setup the parameters Type plot to plot the spectrum Default printer plotter device for all parametersets is defined during expinstall individual printer standard printer plotter device for plotter device for current dataset is all datasets of the defined by edo current user is defined by setres Note that the setting in edo only counts for the current dataset The command Plotting and Printing under Windows XP 189 setres allows you to specify a general printer for all datasets of the current user The printer setting in the setres window dominates the settings in edo i e if you are fixed a printer device in set res the plot command will be always send to this printer independently a different printer device in edo In XWIN PLOT a Click File Print b select your desired printer in the pull down list to the right of Name field c Click OK Print x m Printer Name HP LaserJet 1100 gt Properties ZEUS Shpelim Status 7EUS hpl4000 Type Apple Laserwriter 12 640 PS Whe HP Lasen et 1100 Comment Print to file Print range Copies All Number of copies fi Pages from fi wh Selection Beep coe 17 1 3 Plotting from XWIN NMR into Plot Files If no printer is connected to your computer you can create Plot Files which can then be plotted from another computer e g on a e Windows XP h
8. Subnet Mask Default Gateway _ bhO29498 bruker com gt 10 1 32 2 a 32 1 p N DNS gt 3Com 3C9 x Ethernet Adapter 00 50 04 05 72 10 No gt 149 236 99 1 gt 255 255 255 0 3Com 3C9 x Ethernet Adapter 66 56 64 1D D8 5 No 10 1 222 1 255 255 6 6 gt 16 1 32 3 Another interesting tool in the miscellaneous section actually issues commands to the CCU rather than to the PC One of the items is pwrdwn in this category that logs in to CCU and issues the UNIX command that powers down the CCU All YOU do is double click on it and watch it do the rest The other categories are Test Tools and Service Tools oix File Edit View Favorites Tools Help e Back gt Z Search Folders r ea Sr TestTools File Edit 10 x Back gt t Bsearch G4 Folders 4 view Favorites Tools Help e e el acb cmd bsms cmd grad cmd hpcu cmd fe e e ei hppr cmd rx22 cmd UniTool cmd UniTool de e e fal rrstest cmd rstest cmd test ccu cmd testhppr cmd testrx22 cmd ig object s 23 1 KB E My Computer j 5 objectis 7 33 KB E My Computer 132 Configuration of XWIN NMR 13 3 You can just double click the appropriate icon and the command shell and tool programs will start up automatically Firmware update of the spectrometer hardware This chapter describes
9. Network Connections Introduction 19 e Right click My Network Places Properties 9 Close a hierarchy of windows opened from My Computer e Press Alt Shift F4 More shortcuts may be found in chapter 18 3 1 Chapter 21 1 contains a blank list for important names and numbers of the hard and software of your PC It is recommended that you fill in the information there before you start the installation 1 5 Important Windows configurations This Installation Guide for the NMR SUITE refers to the following configurations for Windows XP Several functions e g Control Panel Start menu Windows Explorer can be configured in a Classic view mode or Category view mode Win dows XP style These modes are not only different in style They can be different in the way commands are entered 1 5 1 Configure the Start Menu For this manual the Start Menu is configured in the Windows XP style e Click the RIGHT mouse button on the Taskbar click Properties e Click Start Menu gt click Start Menu gt click OK Taskbar and Start Menu Properties Taskbar Start Menu Select this menu style for easy access to the Internet e mail and your favorite programs O Classic Start menu Select this option to use the menu style from earlier versions of Windows 20 Introduction 1 5 2 Configure the Control Panel and the Windows Explorer For this manual the Control Panel and the Windows Explorer were configured in t
10. e Double click the icon Add Printer A window Add Printer Wizard will appear a Click Next Local Printer disable Automatically detect and install my Plug and Play Printer click Next a Enable Create New Port select Type LPR Port Next A window Add LPR compatible printer will appear a In the field Name or Address of server providing Ipd enter the name or IP address of the Print Server b Inthe field Name of printer or print queue on that server you must enter e rawl if you have an internal JetDirect adapter e rawl raw2 or raw3 if you have an external JetDirect print server depending on the JetDirect port to which the printer is connected 76 Installing a Printer c Click OK 7 In the window Printer Ports e Click Close 8 In the window Add Printer Wizard e Click Next 9 Continue the installation as described in chapter 6 1 1 step 4d Part Il NMR Suite Installation and Configuration Chapter 7 Installing Internet Explorer 7 1 When do I need Internet Explorer If you want to use the NMR GUIDE which is part of TOPSPIN it is necessary to install Internet Explorer version 6 0 It is available on the Windows XP CDROM If you use Windows XP you should install Service Pack 1 7 2 Is the Internet Explorer 6 0 or newer already installed Before you install Internet Explorer 6 0 you should check whether it is already installed Login as Administrato
11. ntbackup 168 169 199 ntbootdd sys 166 ntdetect com 166 NTFS 37 NTFS filesystem 17 30 165 180 202 ntldr 166 Nutcracker 150 151 152 154 NuTCRACKER Service 150 NVIDIA Quadro4 380 XGL 13 O Online Help 104 193 only processing PC 121 order number 117 Outlook Express 56 P Paint 67 PARAVISION 113 password encryption 52 patches 104 Patchlevel 103 PDC 59 pdf 11 PDF viewer 17 104 109 performance 13 PERL 100 permissions 98 180 182 permissions of files 182 physical address 117 ping 47 plain passwords 53 plot 190 191 192 plotfiles 190 port 189 Port Mapper 150 Powerpoint 191 192 print 198 printcap file 70 71 72 73 printer driver 65 PROMS 156 Properties 182 183 207 PseudoColor 93 154 pwd 198 pwrdwn 131 Q QuickEdit 207 R rcp 183 Read only attribute 183 Registry 26 27 174 Registry Control Set 174 Release Letter 11 101 remote directory 49 remote files 48 remote host 54 56 67 remote login 56 remote PC 73 remote printing 68 69 71 73 remote service 99 remove 216 ren 198 resize 206 resolution 35 rm 198 rmdir 198 route 47 rs232 158 Run as 18 RX2 tool 41 164 S Samba 52 53 71 73 samba53 52 samba6x 52 SBASE 103 Schedule 150 scratch 11 23 SCSI 168 SCSI BIOS 166 Search 177 search 205 Search program 18 180 203 Security 182 security database 59 security identifiers 59 self extracting file 104 Send 56 SERVER line 4
12. will appear a Click in the field Connect using select COM2 b Click OK A window COM2 Properties will appear a Click in the field Bits per second and select 9600 b Click in the field Flow Control and select Xon Xoff the other settings remain unchanged Data bits 8 Parity None Stop bits 1 c Click OK the output of the CCU will appear in the window CCU Hyper Terminal 7 Click File Save 8 Click File Exit 9 Answer the question Are your sure you want to disconnect now with Yes 15 4 5 Usage of Hyper Terminal 1 2 Click Start All Programs Accessories Hyperterminal gt CCU ht A window CCU Hyper terminal will appear in which you see the output of the CCU If the CCU is booted you will see a login prompt and you can log in as root If the CCU is not booted you can push the reset button on the CCU and view the boot process The boot process is shown below The messages Fast ethernet only occur for CCU 9 and indicate whether you have a 10 MBit s or 100 MBit s ethernet connection Note that a UNIX pathname for the DISKLESS program is shown Do not worry about this it is automatically interpreted as an Windows XP path like C Bruker Diskless Autoboot Waiting to load bfs usr diskless cli 160 Troubleshooting ents spect root unix r4600_std CTRL C to abort loading Fast ethernet FEN 100 MBit s half duplex ia Obtaining usr diskless clients
13. 3 Click to clear the Turn off System Restore check box or the Turn off System Restore on all drives check box gt click OK Turn off System Restore When you turn off System Restore all existing restore points are removed and you are no longer able to track or undo changes to your computer To continue to use System Restore to restore your computer to a previous state do not turn off System Restore To turn off System Restore follow these steps 1 Click Start gt right click My Computer gt click Properties 2 Click the System Restore tab 3 Click to select the Turn off System Restore check box or the Turn off Sys tem Restore on all drives check box gt click OK 4 Click Yes when you receive the prompt to the turn off System Restore 174 Troubleshooting 15 14 Start the system restore tool from a command prompt in Windows XP Windows XP includes the System Restore tool but you cannot start the System Restore tool from a Recovery Console prompt Because of this it may be useful to start the System Restore tool when you are unable to start your Windows XP based computer normally or in Safe mode NOTE You must log on with administrator rights 1 Start your computer to Safe Mode with Command Prompt 2 At the command prompt type Ssystemroot system32 restore rstrui exe and then press ENTER Follow the instructions on the screen to begin restoring your computer to a pre vious functional state 15 15
14. A window License Agreement will appear e Click I accept e Click Next e A window Customer Information will appear Insert the appropriate infor mation or leave the proposals unchanged it is important that this application will be installed for anyone who uses this computer e Make sure that for the feature nstall this application for the field Anyone who uses this computer all users is enabled e Click Next f A window Destination Folder will appear e Click Next g A window Setup Type will appear e Click Typical e Click Next h A window Ready to Install the Program will appear 92 Installing Exceed NFS Server e Click Install i A window Installing Hummingbird Exceed will appear showing a progress bar j A window Keyboard Preference will appear e Click Next k A window Xconfig Password will appear e Insert a password and click Next D A window X server tune up will appear e Click Next this procedure will take several minutes m A window Hummingbird Setup Wizard Completed will appear e Click Finish 8 Back in the window Hummingbird Exceed V7 1 1 e Click Back e Click Exit 9 Remove the CDROM 10 3 2 Configuring of Exceed 7 x The configuration description is given for the version 7 1 1 but is also valid for all exceed versions 7 x 1 Log in as Administrator 2 Click Start All Programs Hummingbird Connectivity V7 1 1 Exceed Xc
15. As you press OK the system will connect this network share as a new drive called U You can look up the new virtual disk in Windows Windows XP Tips and Tricks 211 20 4 3 20 4 4 Explorer after a few seconds 6X Exploring U OF x File Edit View Tools Help all Folders Contents of U Mtg on Wey S E Tmp on Sws T C temp E Quadcourse on Dmx400wb L E chabasite 27al E Software on wow Ww Coibin on Sws 2 2000 on wry Y Main 2 G Control Panel seit An Printers x 4 48 2KB Disk free space 1 07GB E Be A On the right hand side the files shared out from UNIX are shown and you can go about copying moving etc just like with native Windows files Configuring Windows XP to handle UNIX style password requests One of the most annoying problems with SAMBA is that older versions are not able to authenticate network connectors using encrypted passwords In SAMBA 2 0 x the default setting is still plain password but you could change it to encrypted This is the best way for the security of your network If you want to use the plain text password it is possible on Windows XP side to enable the authenti cation with clear text passwords sent over the networking enabling the respective registry key see the following chapters 20 4 5 and 20 4 4 NOTE THAT THIS INTRODUCES A SIGNIFICANT SECURITY LEAK
16. Enable Plain Text Password Log in as administrator Click Start Control Panel Click Administrative Tools Local Security Policy Enable the tree Local Policies gt Security Options On the right side double click the entry Send unencrypted password to Click on enabled If your computer is part of a Windows NT 2000 domain contact your domain administrator about this policy setting and its interaction with possible group policies NA un bk He NY 212 Windows XP Tips and Tricks 20 4 5 There is one shortcut you can try with newer samba versions They deliver a file called WinXP_PlainPassword reg in the samba docs directory If you can locate this file in the Windows Explorer and double click it it will automatically make the additions to the registry file detailed hereafter If you double clicked the file and it worked you are done here If not you need to proceed as detailed in chapter 20 4 4 and manually make the necessary changes 20 5 How to log on to Windows XP if you forget your password 20 5 1 Method 1 Log On as an Administrator and Reset the Password If you can not log on to Windows by using a particular user account including the Administrator or Computer Administrator accounts but you can log on to another account with administrative privileges including the Administrator or Computer Administrator accounts follow these steps 1 Log on to Windows by using the administ
17. If you get a physical connection light goes on obtain a temporary IP address for the PC and install the card net work netmask DNS etc to the point where you see the rest of the company through the network neighborhood of your PC This will make sure that your card works at all Then switch back to the IP netmask for spect and reboot PC Is the light on If not get a new Ethernet card b If the light is on At this point you know that the physical connection is intact that is the connec tion light on the PC s Ethernet board came on There are two possibilities to check from here 158 Troubleshooting 15 4 2 15 4 3 15 4 4 e CCU is indeed booting OK yet you can t access it for some reason e CCU really does not boot and you have to find out why Before you proceed you might want to quickly check the settings in NFS Maestro Call it from the Control Panel HCL NFS Server and you need to see the configu ration given in chapter 11 6 If settings have to be altered do this reboot the PC and then the CCU before checking again e The minimum test is this Try to ping spect and then to telnet spect see chapter 13 2 Here is how to proceed If you can ping and telnet and get spect s login prompt you should be able to run XWIN NMR from here You are all set If you can ping but cannot Telnet to CCU the physical connection is all right but CCU doesn t boot Please connect a monitor cable to CCU and open a Hyper
18. In order to allow Remote Users to access folders files at Level 3 you must share them out on the network Level 4 or 5 To configure a file folder and all of the files in it to Level 3 a Start Microsoft Windows Explorer b Copy or move the file folder to the Shared Documents folder under My Computer 4 Level 4 Shared on the Network Read Only For everyone on the network and local users including the Guest account if ac tivated the files are shared to read But they are not allowed to modify the con tents User that can connect to the computer on the network are able to read and change these files To configure a folder and all of the files in it to Level 4 a Right click the folder click Sharing and Security b Click to select the Share this folder on the network check box c Click to clear the Allow network users to change my files check box gt click OK 52 Windows XP Networking 5 4 3 5 Level 5 Shared on the Network Read and Write This level is recommended only for a closed protected network that has a fire wall configured This level is the most available and least secure of all access levels Any user can read write change or delete a file in a folder shared at this access level To configure a folder and all of the files in it to Level 5 a Right click the folder gt click Sharing and Security b Click to select the Share this folder on the network check box gt click OK NOTE
19. MSG net send SADDRESS2 SMSG net send sADDRESS3 MSG You have to write in your individual parameters e replace Avance 300 with the name of your spectrometer e replace NMR SUPE RUSER PC with the name of the PC of the NMR Supe ruser Appendix 225 replace HELIUM REFILLER PC with the name of the PC of the responsible person for helium refill Attention the text sequence set MSG Attention At the magnet of the t INSTRUMENT spectrometer is the heliumlevel of LEVEL equal or lower than the helium level limit of LIMIT please order liquid helium and refill the helium tank This message has been sent by MYSELF on HOST to ADDRESS1 SADDRESS2 and tADDRESS3 oao A had to be written in one line Click file save as and save it as lt XWINNMRHOME gt heliumwarn cmd Now the defined PC s will get an error message if the actual helium level is the same or below the entry in in the file lt XWINNMRHOME gt heliumlimit The notifications were sends only once but it will be activated again if the helium level is against higher than the limit Note that this script is only an example if you would like to add more PC s in the notification list you had to add the respective addresses if you like to have less addresses you have to delete the respective entries 21 4 2 Helium measurement under Windows XP Service Pack 1 On Windows XP SP1 the nightly h
20. PC is not booting from floppy In case it is not possible to boot the PC from a bootable floppy this possibility might be disabled in BIOS The following description shows how to enable the boot from floppy feature on a hp workstation xw4100 PC On other PC s the pro cedure might be slightly different 1 During boot time cancel the boot process and go into BIOS On different PCs there are different ways to do this for example on some PCs the boot sequence is interrupted with the Delete key rather than with the F2 key 2 Go to section Security Boot Devices Security 3 Set Floppy to Enabled Note It is recommended to disable the boot from floppy feature after the boot process is done If it is enable it is possible to get very easily a boot virus into BIOS that can make your PC defective Another small advantage is that if the BIOS feature above is enabled and a nor mal floppy is inside the drive booting the PC will stop and showing the informa tion that a non bootable floppy is inside If it is disabled booting the operating system will work with or without floppy Floppy boots Operating System from hard disk You can create an Windows XP Boot Disk by formatting a floppy from within Windows XP and copying the following files from the root of an Windows XP boot partition e g C to the floppy Special note the boot partition is the first par tition which is read by bios This is normally but not necessary the p
21. Terminal connection HyperTerminal is Windows s text terminal emulator and it comes with every copy of Windows The details are in chapter 15 4 5 If you can t even ping CCU try a new Ethernet cable and if it still doesn t work try another type of Ethernet card Software related problems Please check if the required Services are running as described in chapter 15 1 1 View the output of the CCU console In order to view the output of the spectrometer CCU you must connect the COM2 port of the PC to tty00 of the CCU For CCU 9 you need a cable with a round rs232 plug on the CCU side order number HZ04161 A For CCU lt 9 you need a cable with a 9 pin rs232 plug on the CCU side order number HZ10034 A The hyper terminal application can be used to make the output of the CCU visible on the PC this has the same function as cu and kermit on UNIX systems Configuration of HyperTerminal 1 Click Start All Programs Accessories Communications gt Hyper Terminal 2 If you do this for the first time HyperTerminal will ask for some informations in Troubleshooting 159 6 the window Location Information Type in your ZIP code and click OK A window Phone And Modem Options will appear OK Then establish a new connection A window Connection Description will appear a In the Field Icon click any icon you decide for b In the field Name enter CCU c Click OK A window Connect to
22. hardware_list_sav e Open the file lt XWINNMRHOME gt conf instr spect hardware_list and paste the new entries to the correct positions 13 2 How to use the Bruker Utilities Folder After a successful installation of the NMR SUITE you will find a new folder on every user s desktop named Bruker Utilities Double click on the folder to see its contents 0x File Edit view Favorites Tools Help Back gt Ey seach GyFolders 4 As GE X A Ee Miscellaneous ServiceTools TestTools Command prompt 4 object s it 37 KB E My Computer In this Utilities folder you will find commands and applications that you might need when running and configuring a spectrometer You can see the command prompt right there just double click on it to get to the prompt The other tools are stored in three categories as shown above You can double click on each of the folders to have them opened up to show their treasures 130 Configuration of XWIN NMR ioi File Edit view Favorites Tools Help Back gt GQAsearch GyFolders 3 0 Gs X A EE u cs 2 bsmsdisp cmd confout txt Explorer get_hostid bat Hardware Hardware list exam e fF amp B amp O fi patchlevel Ping spect printconf cmd pwrdwn bat sh exe shmrm cmd Showconf all ce A l D amp A showconf bat StartGuide Telnet spect Uxnmrinfo xwinnmr sa xwinversio 20 object s 101 KB KE My C
23. 1 Go to the icon My Computer on the desktop gt right mouse click Manage or Open the Microsoft Explorer Go to My Computer right mouse click Manage 2 A window Computer Management will appear 144 User Management e Click Local Users and Groups 3 Click User 4 Highlight the user root e right mouse click Properties A window root Properties will appear Open the folder Member of e Click Add A window Select Groups will appear e Click Advanced Click Find Now e highlight group you want to be a member of e Click OK gt OK Close the window NmrUser Properties by clicking OK 14 2 User Management in a Domain PC 14 2 1 Adding a second user with Administrator rights in a domain PC 14 2 2 The group domain admins are automatically a member of the local group administrator so it is not necessary to create a second user with administrator rights Adding a local user in a domain PC 1 2 Log in as Administrator Go to the icon My Computer on the desktop right mouse click Manage or Open the Microsoft Explorer Go to My Computer right mouse click Manage A window Computer Management will appear e Click Local Users and Groups Highlight User e right mouse click New User A window New User will appear e Enter the users Full Name and Description optional and the users pass User Management 145 14 2 3 word
24. 17 24 100 X32 53 Xconfig 92 93 xcopy 198 XWIN NMR commands 100 data 17 165 187 installation 103 Online Help 11 104 patches 104 startup 120 un install 25 26 xwinnmr save 138 XWINNMR3 114 XWINNMRPLOTFILES 190 191 XWIN PLOT 113 117 192 Z zg 156
25. 205 20 2 2 e click File Paste You can also click a data expno or procno folder and read the corresponding data set into XWIN NMR Copy a text item into the XWIN NMR command line Any text item which can be copied to the Clipboard can be pasted to the XWIN NMR command line Of course this is only useful if this text item is an existing XWIN NMR command You can for example copy an XWIN NMR command from the manual to the command line 1 Click Help Complete Processing Manual 2 The PDF viewer if installed will start up showing the XWIN NMR processing manual a Click Tools Select text b Mark an XWIN NMR command in the manual e g search c Enter Ctrl C 3 Move the cursor on the XWIN NMR command line 4 Click the middle mouse button This feature is especially useful for long command names or commands with many arguments The text can come form various sources e g online documents the Command Prompt text editors You can however not copy file or program names directly from the Explorer to the XWIN NMR command line Troubleshooting if this feature does not work please check if AutoCopy X Selec tion and Auto Paste to X Selection in Exceed are on see chapter 10 3 1 Correct them if necessary and restart XWIN NMR 20 3 Various useful configurations This paragraph describes several settings that we found useful They have no influ ence on the NMR SUITE performance and you are free to choose your own set
26. Bruker BioSpin XWIN NMR and the datasets of the NMR experiments requires the file format NTFS So if you want to use a FAT partition of your harddisk s for installing the NMR SUITE or storing NMR data you have to convert this partition to NTFS that is the file system of Windows XP before you can install the NMR SUITE Only under NTFS it is possible to have the file permissions ownership and access management settings that make Windows XP secure You can use the con vert command convert exe to convert an existing FAT volume to NTFS Because this conversion retains all of your files unlike a format operation use convert exe when you want to keep existing files on your volumes intact Before you convert a drive or partition to NTFS consider the following The conversion to NTFS is a one way process After you convert a drive or parti tion to NTFS you cannot convert it back to FAT To restore the volume to the pre vious file system you must format it as FAT again This action erases all existing data including your programs and personal files In this case you must either restore your data from a backup or reinstall your operating system and programs 37 38 Configuring Windows XP convert exe requires that you have a certain amount of free space on the drive or partition to convert it If convert exe determines that there is not enough free space on the volume it does not convert the volume 4 1 1 Check the Disk Partitioni
27. Creating shortcut icons to documents files For frequently used files it is convenient to create a shortcut icon on the desktop If Windows XP recognizes the extension of the file the corresponding program to read the file will be started e g Word for a doc file For a text file without exten sion you can specify the program to be used e g notepad in the shortcut proper ties As an example we will use the XWIN NMR history file 1 Find the directory lt var gt prog curdir lt user gt in the Explorer e g C Bruker XwiIn nmr prog curdir guest 2 Press and hold the right mouse button on the icon history 3 Drag the history icon on the desktop then release the right mouse button 4 Click Create Shortcut s Here an icon Shortcut to history will appear 5 Right click the icon Shortcut to history 6 Click Properties 7 A window Shortcut to history properties will appear a Click Shortcut b In the field Target insert the program to be used before pathname e g notepad C Bruker X WIN NMR prog curdir guest history c Click OK 20 2 Convenient handling of XWIN NMR under Windows XP 20 2 1 Reading data from the Explorer into XWIN NMR XWIN NMR can read data from the Explorer via the Clipboard Perform the follow ing steps a In the Explorer e Find the dataset you want to display in XWIN NMR e Right click the data name folder e A popup window will appear click Copy b In XWIN NMR Windows XP Tips and Tricks
28. Function Command Graphical Interface Prompt Directories make a dir mkdir File New Folder md remove a dir rmdir Right click icon in Explorer Delete change dir Utilities time and date backup cd lt dir gt date time ntbackup Explorer Start Settings Control Panel gt Date Time Start Programs Accessories Sys tem Tools Backup Windows XP commands 18 3 Keyboard shortcuts 18 3 1 General Shortcuts Function or mouse equivalent Keyboard shortcut 1 Start CTRL ESC Start Documents CTRL ESC d Start Help CTRL ESC h F1 from desktop or explorer Start Run CTRL ESC r WIN R Start Search CTRL ESC c F3 from desktop or explorer WIN F Start Shutdown CTRL ESC u Taskbar Task Manager CTRL SHIFT ESC Close the active window ALT F4 Close a hierarchy of windows ALT SHIFT F4 Switch to other task ALT TAB Minimize all windows on desktop WIN M Restore all windows as seen before WIN SHIFT M Toggle normal full screen Com ALT ENTER mand Prompt Copy entire screen to Clipboard Copy active window to Clipboard PRTSC Print Screen ALT PRTSC Print Screen 1 Be careful If no window is active Windows XP will prompt for re boot Windows XP commands 197 18 3 2 Shortcuts for Windows Explorer Function Keyboard shortcut 1 Open new Explorer window WIN E Rename file F1 Open online help F2 Open Find dialog F3 Open Folde
29. Icache size bytes Dceache size bytes gt gt then you might have one of the following problems The Service bfs not running Click Start Control Panel Administrative Tools Services gt bfs Start The Diskless package is not installed see chapter 5 6 The ethernet cable between PC and CCU allows no data throughput check the connection between the cable and the PC CCU check if the correct ethernet card is connected check the configuration of the ethernet port see chapter 5 1 b If booting stops at 2 you may have one of the following problems The Service bootparam is not running Click Start gt Control Panel Administrative Tools gt Services gt bootparam Start The file C Windows system32 drivers etc Hosts is wrong It should contain the following entries 149 236 99 1 ASP_ST2 149 236 99 99 spect Be sure that spect is the first entry after the number in this line c If booting stops at 3 you might have the following problem The file c Bruker Diskless WinApp bootparams is wrong For a default installation it must contain the lines 162 Troubleshooting spect root ASP_ST2 C Bruker Diskless clients spect root swap ASP_ST2 C Bruker Diskless clients spect swap dump ASP_ST2 C Bruker Diskless clients spect dum For a custom installation the path of Diskless can be different d If booting hangs at 3 i
30. If Windows does not start restart Windows by using the Last Known Good Configuration feature 172 Troubleshooting 1 Start the computer and then press the F8 key when Windows begins to start The Windows Advanced Options menu appears 2 Select Last Known Good Configuration your most recent settings that worked and then press ENTER 3 Ifa boot menu appears use the ARROW keys to select Microsoft Windows XP and then press ENTER Windows XP restores the computer to the most recent restore point Windows XP Does Start 1 Log on to Windows as an Local Administrator 2 Click Start All Programs Accessories System Tools System Restore System Restore starts 3 A window Welcome to System Restore appears click Restore my computer to an earlier time if it is not already selected gt click Next 4 A window Select a Restore Point appears Click the most recent system checkpoint in On this list click a restore point list click Next 5 A System Restore message may appear that lists configuration changes that System Restore will make gt click OK 6 On the Confirm Restore Point Selection page click Next System Restore restores the previous Windows XP configuration and then restarts the com puter 7 Log on to the computer as an administrator A window The System Restore Restoration Complete will appear Click OK 15 12 2 Troubleshooting It could happen that you restore Win
31. Layout b In the field Screen Buffer Size e Set Width to 200 e Set Height to 100 c Click OK 4 A window Apply properties to shortcut appears a Click Modify shortcut which started this window b Click OK Enabling the cut amp paste function 1 Click Start All Programs Bruker NMR Suite GNU Shell 2 A GNU shell window will appear a Click the symbol in the upper left corner of the window b Click Properties 3 A window GNU shell properties will appear a Click Options b Select QuickEdit Mode 4 A window Apply properties appears a Click Apply properties to current window only b Click OK The reason we do not recommend to enable the cut amp paste function by default is that it would also count for the GNU shell started by XWIN NMR Accidentally using cut amp paste in that window could cause XWIN NMR to crash 20 4 Connecting UNIX and Windows XP with Samba Samba is a suite of programs which work together to allow clients to access UNIX file systems and printers via the SMB Session Message Block protocol 208 Windows XP Tips and Tricks In practice this means that you can share disks and printers with UNIX systems You can then access them from LanManager clients Windows for Workgroups 3 11 clients Windows95 clients Windows NT clients Windows XP clients and OS 2 clients A share is a term used to describe resources directories printers etc that the server is making ava
32. Network Protocol menu will appear after some seconds Click NWlink gt OK After some seconds the Properties menu will reappear Click Close See also C flexlm Bruker help Index htm for FlexLM related problems 12 2 3 Installing a Demo license A Demo license can be installed as follows 1 Log in as Administrator 2 Install the Flexlm license manager as described in chapter 11 3 3 Open a Command Prompt and enter cd d a flexlim Bruker licenses The NMR Suite license 119 12 2 4 e notepad license dat enter the FEATURE lines save and exit the file Of course you can also install the license file from the Explorer We have chosen the Command Prompt because the Explorer might add the perhaps hidden exten sion txt to the file lLicense dat which makes it unusable see chapter 16 1 3 Installing a full license on a license server The Flexlm license manager must always be installed and run as an Windows XP service on the license server It is delivered on the NMR SUITE CDROM and can be installed as described in chapter 11 3 The Flexlm is automatically installed as a Windows XP Service which is then automatically started On the license server the file license dat must contain a SERVER line a DAE MON line and FEATURE lines An example would be SERVER tulip 0060080e830d 1700 DAEMON bruker_ls c flexlIm Bruker bruker_ls exe FEATURE XWINNMR3 bruker_Is 0 000 18 mar 2014 3 9B5EE07110D9CF96DOD2 vendor_
33. Note that the first character must be alphanumeric and underscores are not allowed e Click OK 4 A window Network Identification will appear e Click OK 5 In the window System Properties Windows XP Networking 47 e Click Close 6 A window System Setting Change will appear e Answer the question if you want to restart the computer now by clicking Yes 7 If you have Floating licenses you must change the hostname in the file license dat By default it resides in C flexlm Bruker licenses You can do this in the following way a Click Start All Programs Accessories Command Prompt b Enter cd c flexlm Bruker licenses c Enter notepad license dat e Change the hostname in the SERVER line then save and exit the file Of course you can also change the license file from the Explorer We have cho sen the Command Prompt because the Explorer might add the hidden exten sion txt to the file License dat which makes it unusable see chapter 16 1 3 5 3 Network diagnostic commands Here is a list of the most important network diagnostic commands as they can be entered from the Command Prompt e arp displays or modifies the IP to physical address translation tables e hostname displays the name of the current host e ipconfig displays information about the current TCP IP configuration e netstat displays protocol statistics and current TCP IP connections e ping checks if a destination host
34. Packard PC s from Bruker BioSpin are delivered with Graphics driver on the CD If you do not have a floppy or a CD and want to install a newer driver you can download a Graphics driver from the Web Go to http h20000 www hp com bizsupport TechSupport Product jsp prodTypeld 43563 The Graphics drivers are offered as self extracting exe files Just download the file for your system then click its icon and insert a formatted floppy This way you can create a new Graphics driver floppy The Graphics driver CD can be installed as follows 1 Insert the Graphics driver CD 2 Click Start gt Control Panel 3 A window Control Panel will appear e Double click the icon Display 4 A window Display Properties will appear e Click Settings 5 If the window Invalid Display Settings appears click OK 6 Click Advanced Adapter Properties Driver Update Driver Next enable Display a List Have Disk 7 A window Install From Disk will appear a Enter your CDROM e g d or accept the default if it is correct b Click OK 8 The Graphics driver which resides on the CDROM will appear Click OK 9 A window Third party Drivers will appear e Click Yes to proceed and wait 10 A window Installing Driver will appear click OK 11 In the window Upgrade Device Driver Wizard click Finish 12 Close the windows you have just opened 13 Remove the CD 14 A window Systems Setting
35. Rename the file to License dat NUTCRACKER fatal error failed to register this Service Failed to register with Service Make sure that Service is running Click OK then just try starting XWIN NMR again it might work the second or third time This error appears if XWIN NMR started immediately after boot ing the PC and so the Nutcracker Service is not yet running If this does not work 152 Troubleshooting 1 Click Start Control Panel Administrative Tools 2 3 Double click Services A window Services will appear select Nutcracker click Start If the service Nutcracker does not start there might be 2 different causes a Certain system software was installed after installing an Windows XP Service Pack re install the Service Pack b XWIN NMR was removed and re installed without rebooting the compu ter in between Remove XWIN NMR reboot and re install XWIN NMR If hostid 0 or ffffffff occurs You may run Windows XP and your network adapter has no link to the network Establish an link to the network or install the NWlink IPX SPX NetBIOS Compatible Transport Protocol a b c d e Click Start Control Panel Network Connections Right click Local Area Connection xxx Click Properties Install gt Protocol Add The Select Network Protocol menu will appear after some seconds Click NWlink gt OK After some seconds the P
36. Server 6 0 1 and e Hummingbird NFS Server 5 1 4 Both versions do not support Windows XP Bruker BioSpin offers the new Bruker BioSpin NT Toolkit 2 CD for Windows 2000 and Windows XP that contains e Hummingbird Exceed X Server 7 1 1 and e Hummingbird NFS Server 7 1 10 2 Preparing for the NT Toolkit installation Bruker BioSpin NT Toolkit 2 CDROM Windows 2000 and Windows XP contain Hummingbird Exceed X Server and Hummingbird NFS Server You must install the Exceed X Server in order to run XWIN NMR XWIN NMR graphics are based on X11 functions The NFS Server is required if your PC controls a spectrometer it 89 90 Installing Exceed NFS Server makes the DISKLESS package available for the CCU Hummingbird Exceed and NFS are available on the Bruker BioSpin NT Toolkit CDROMs or can be pur chased from Hummingbird r Before you install the NFS Server e Click Start All Programs Accessories Command Prompt e Enter ipconfig all and check if the network is installed If it is not install the network as described in chapter 5 10 3 Installing the X Server Exceed Currently supported versions for Windows XP of the X Server Exceed is 7 1 1 If this is already installed you can skip this chapter If another version is installed remove it according to chapter 2 3 reboot the com puter and continue with chapter 10 3 1 The description of chapter 10 3 1 refers to the installation of Exceed 7 1 1 from the Bruker BioSpin NT Toolki
37. Xwin nmr will display the rpar list of all parameter sets beginning with PROT The command rpar Prot will show no parameter list although the MS Explorer displays the parameter set PRO TON in the wrong way Proton 21 6 Books on Windows XP If you want to learn more about Windows XP you can choose from various books on the subject both for users and system administrators Several of them are deliv ered with a CDROM containing training or Windows XP applications like the Windows XP resource kit For prices descriptions and ordering information we refer to the following Web site http store yahoo com softpro http shop microsoft com 21 7 Web pages on Windows XP Most of the web pages below were recommended by the eLetter www execu tive com eletter http www microsoft com windowsxXP default asp http support microsoft com Chapter 22 Bruker BioSpin addresses Germany Bruker BioSpin GmbH Silberstreifen D 76287 Rheinstetten Tel 49 721 51 61 0 Fax 4 49 721 51 71 01 Bruker BioSpin Software Department Silberstreifen D 76287 Rheinstetten Tel 49 721 5161 455 49 721 5161 943 Fax 4 http www bruker biospin de ftp server ftp bruker de Email nmr bruker biospin de mbu bruker d servic sales applik bruker de application nmr software support bruker biospin de software license bruker d l
38. a script for saving those important files that are not delivered by BRUKER This script can save and extract user specific data from the lt XWINNMRHOME gt directory and puts them into a tar file Files that start with 138 Configuration of XWIN NMR nn an are ignored The script can be started as follows Click on the Bruker Utilities icon on the desktop Bruker Utilities gt Miscellaneous gt xwinnmr save cmd For more information open the command prompt of the Bruker Utilities Bruker Utilities Command prompt and enter prog bin utilities miscellaneous xwinnmr save help Files and directories will be saved into the special tar file xwin_backup tar which is by default in the directory lt XWINNMRHOME gt xwin_backup The following directories are saved completely hidden files are ignored lt XWINNMRHOME gt exp stan nmr lists group lt XWINNMRHOME gt exp stan nmr lists scm lt XWINNMRHOME gt exp stan nmr lists bsms lt XWINNMRHOME gt exp stan nmr lists mac lt XWINNMRHOME gt exp stan nmr lists fl lt XWINNMRHOME gt exp stan nmr lists ds lt XWINNMRHOME gt conf instr lt spect gt prosol lt XWINNMRHOME gt conf instr lt spect gt cortab lt spect gt represents the current spectrometer name or the name specified explicitly when xwinnmr save is started From the following directories every file is saved that does not belong to the genu in
39. be displayed correctly now 16 4 Compressing files and directories 16 4 1 Setting the Compress attribute For each file and directory under Windows XP you can set so called attributes One of these is the Compress attribute which reduces the size considerably 184 File and directory handling 16 5 1 Right click a file or folder in the Explorer 2 A popup menu will appear e Click Properties 3 A window lt name gt Properties will appear a Click Advanced b Enable the attribute Compress Contents to save disk space OK gt OK Compressed data will be uncompressed and recompressed automatically whenever they are accessed by an application Note that this process will take time and your application runs slower when they work on compressed data For transferring files or directories you might want to compress archive them in zip format using the program Winzip rather than using the Compress attribute see chapter 19 2 Editing text files You might know UNIX doesn t write Carriage Returns CR at the end of text lines That means that some files we create will not display properly in an editor like notepad Ej hardware exam Notepad E File Edit Search Help iy hardware exam list of all hardware detectable by cf E E To copy one of these entries into hardware_list proce HHHHHHHHHHHHHHHHHHHHEI REH PN C PN D PN E ECL SN description commenta m Transmitter entri 8 B LTH166 566 666 26 46dB 1H 26
40. configuring Windows XP Professional Windows XP exists in two different forms Windows XP Professional and Win dows XP Home Edition The installation as described in this chapter is valid for the English version of Win dows XP Professional on a hp workstation xw4100 In this case you can install Windows XP exactly as described here For other versions of Windows XP or other hardware the installation procedure might be different For example on some PC s the boot sequence is interrupted with the Delete key rather than with the F2 key This description is intended for new installations If Windows XP is already installed and you have problems Before you decide to re install Windows XP try to repair Windows XP Repairing Windows XP means that you selectively re install parts of Windows XP leaving application software and data intact 29 30 Installing and configuring Windows XP Professional 3 1 Scratch install of Windows XP 1 5 If your computer is running a Click Start gt Shut Down Shut down the computer Yes b When you see the text It is safe to turn off your computer insert the CD ROM Windows XP Professional Restart the computer and Interrupt the boot process by pressing the F8 key Do not press F2 to go into BIOS because there you can easily make your PC unable to boot Wait until the boot device menu appears select removable device with the ARROW KEY DOWN
41. described in chapter 17 1 3 Importing XWIN NMR data into Microsoft programs XWIN NMR can plot the current dataset to the Windows XP Clipboard From the Clipboard data can easily be imported into Word Powerpoint and other programs 1 Write an XWIN NMR dataset to the Clipboard a Enter edo b Click the small arrow button right of the field CURPLOT c Select Clipboard d Click SAVE 192 Plotting and Printing under Windows XP e Enter plot 2 Read the dataset into a Microsoft program e g in Word e Click Edit Paste Note that after step 1 the data can be viewed from the Clipboard by clicking the icon Clip board on the screen Instead of using the Clipboard you can also store XWIN NMR data into an Enhanced Metafile and import that into a Microsoft application as described in chapter 17 1 4 17 1 6 XWIN PLOT 1 XWIN PLOT uses the printer driver system of Windows XP for any printer out put This means that any printer for which a windows driver is correctly installed can be selected as print device Note that the printer name in a layout file written by the Windows XP version is probably not known by the UNIX version of XWIN PLOT because of the different printer handling Apart from that layout files can be freely interchanged between the two platforms 2 XWIN PLOT uses the Windows XP Clipboard If you put one or more XWIN PLOT objects to the Clipboard then these are stored in windows metafile format Therefore
42. e g software testfirm de e The email address of the Web administrator 2 Check the Apache server with a WWW browser type in the URL http Nocalhost You should see the Apache server s default page 3 Now you can install the NURGuide During the NMRGuide installation two lines will be appended to the file C Program files Apache Group Apache conf ittpd conf These lines are NMR Guide include Installing the Web Server for using NMR GUIDE 83 8 4 2 8 4 3 8 4 4 Include C Bruker lt X WINNMRHOME gt guide java apache NT4W2 K ht tpd conf After the installation the Apache server SERVICE should be stopped and restarted To test NMURGuide open Internet Explorer and type in the URL http Nocalhost guide test html Situation 2 Apache web server already running Follow steps 3 5 of chapter 8 4 1 Situation 3 Switching from IIS to Apache web server 1 Go to the services menu 2 Stop the IIS service 3 4 Follow steps 1 5 of chapter 8 4 1 Disable the IIS server Situation 4 Running Apache web service while running IIS 1 Go to the services menu 2 Stop the IIS service 3 4 Find the following line in the Apache s httpd conf file Follow steps 3 of chapter 8 4 1 Port 80 Replace it with Port 8080 Go to Services e Start the Apache server e Start the IIS server To test the IIS server open Internet Explorer and type in the URL http Nocalhost To te
43. e as pdf file on the NMR SUITE CDROM e as XWIN NMR Online Help click Help Installation Guide e as the at the time actual version on the Bruker web server http www bruker biospin de NMR nmr softw passwd docu index html e Note that this manual does not contain the NMR SUITE Release letter That is a separate document which is not available as a hard copy but delivered as pdf and text files on the NMR SUITE CDROM and also on the Bruker web server you can find it at the same URL as the Installation Guide http www bruker biospin de NMR nmr softw passwd docu index html This manual is subdivided into an introduction and three main parts It depends on your local demands which of these are necessary for you at the moment The first part describes the scratch installation of Windows XP and some configu 11 12 Introduction 1 2 ration steps for Windows XP network and printers If you want to install the Bruker BioSpin NMR SUITE on a PC which is already in use you can skip this part and start with part two Note You can also use the Bruker BioSpin NMR SUITE 3 5 on Windows 2000 Part two describes the installation and configuration of the NMR SUITE and some necessary additional software package It is recommended to follow the instruc tions step by step In the last part you can find some additional information for working with Win dows XP and the NMR SUITE and also some tips for troubleshooting Note that all te
44. folder and or subfolder and or files OK gt OK gt OK 1 If Windows XP is installed the security section might be not displayed If you like to see it you have to define it in the options of Windows Explorer Click on Tools Folder Options click on View and disable the entry Use simple file sharing Recommended File and directory handling 183 16 2 4 Read only attribute The problem of setting the Read only attributes only in the entire directory and not in the subdirectory is solved under Windows XP 1 Find the file or directory in the Explorer 2 Right click its icon 3 4 A window Properties will appear Click Properties a Click the attribute Read only to switch it on or off A window Confirm Attribute Changes will appear where you are able to decide if your changes are set only for the entire directory or also for the subdi rectories and folders 16 3 Known Problems in XWIN NMR for Windows XP AU programs which were copied from another computer are sometimes not dis played properly by Notepad This happens if they were transferred with FTP in binary mode You can either transfer the file again using ftp in ascii mode or with rep or you can correct the local AU program as follows 1 2 Start All Programs Bruker NMR Suite GNU Shell vi au_program in the editor window enter set textmode wq notepad au_program the AU program should
45. if you see the entry NFS Maestro If it does not appear install NFS Maestro Server as described in chapter 10 4 2 Click Start All Programs Accessories Command Prompt enter ipconfig all and check if the second Ethernet adapter is configured If it is not configure it as described in chapter 5 The NMR SuperUser During the installation of the NMR SUITE you will be prompted for the NMR SuperUser In XWIN NMR the NMR SuperUser password is requested by certain commands like cf expinstal11 etc The NMR SuperUser can be Administrator this is the default or any other user The NMR SuperUser can also be a Domain account If you choose an NMR SuperUser other than Administrator make sure that this user exists under Windows XP see chapter 14 1 For a local account the installation program will warn you if the specified account does not exist but not for a Domain account We recommend to install a special user for this purpose e g a user named nmrsu This user does not need any special permissions under Win dows XP standard access permissions are sufficient 11 1 1 1 How to change the nmrsu after installation of NUR SUITE 1 Double click on the icon Bruker Utilities on the desktop A window Bruker Utilities will appear 2 Double click on the command prompt Note It is not possible to use a normal windows command prompt because in Installing the NMR Suite 99 11 1 2 11 2 this special command prompt
46. in the fields Password and Confirm Password Create Close 6 Highlight the user you had just create e right mouse click Properties 7 A window lt Username gt Properties will appear e Click Member off Add 8 A window Select Groups will appear e Click Advanced Click Find Now e highlight every name you want to be a member of NmrUser e Click OK gt OK 9 Close the window lt Username gt Properties by clicking OK Click Start gt Shut Down Select Log off Administrator Click OK Press CTRL ALT DEL Now you can log on as the new user Adding normal users to the group NmrUser in a domain PC Each user who wants to run XWIN NMR must be a member of the group NmrUser This group is automatically created during the XWIN NMR installation To add a user log in as Administrator otherwise you will be asked for the administrator password during the process and proceed as follows 1 Go to the icon My Computer on the desktop gt right mouse click Manage or Open the Microsoft Explorer Go to My Computer right mouse click Manage 2 A window Computer Management will appear 3 Click Local Users and Groups e Click Groups 4 Highlight the group NmrUser e right mouse click Properties 146 User Management 14 2 4 5 6 7 A window NmrUser Properties will appear e Click Add A window Select Groups will appear e Click Advanced Click Find Now e highligh
47. is receiving TCP IP packets e route maintains and displays routing tables e tracert displays the route packets take to a destination host e net start displays all running services e net use display current network connection e nbtstat a displays all registered NetBIOS names Windows XP Networking 5 4 Accessing remote files and directories 5 4 1 Sharing directories from a Windows XP host Network operations under Windows XP primarily takes place via the Windows XP sharing mechanism For example you can share the data directory c data on nthost_a by taking the following steps 1 Log in as Administrator on nthost_a 2 Open drive C in the Explorer 3 Right click on data 4 A popup window will appear Click Sharing and Security 5 A window Data Properties will appear a Click Share this folder e Accept the default shared name data or enter any other name e Optionally you can enter a comment b Optionally you can set a user limit and or shared permissions note that the default permissions are Full Control for Everyone c Click OK The directory c data can now be accessed from any Windows XP host in the network e g from nthost_b in the following way 1 Log in on nthost_b as normal user 2 Click the icon My Network Places on the desktop 3 A list of hosts in the network will appear e Double click the icon of nthost_a 4 A window Enter Network Password will appear a In the field Connect A
48. one computer in the network If more than one license is available as many copies of the program as are covered by the license can be started simultaneously For example if you have a license file with 5 licenses for Xwin nmr Xwin nmr can be started 5 times from any 5 computers in the network The number of licenses is stated in the FEATURE for the respective program 7 What is a Node Locked license A node locked license allows you to start the respective program only on the computer with the Host ID for which that license was generated Typically this license form is chosen for spectrometer computers No other computer can use the license in the way described above for floating licenses 8 already have a Floating license on my SGI Can I use it on a PC Yes if the PC is connected to the SGI via Ethernet TCP IP Just copy the file license dat from the SGI to the PC from usr local flexlm Bruker licenses license dat toc flexlm Bruker licenses license dat 9 If I have a Floating license for my PC can I use it on a SGI Yes if the PC is connected to the SGI via Ethernet TCP IP Install the license on the PC and copy the file License dat from the PC to the SGI from c flexlm Bruker licenses license dat 116 The NMR Suite license 10 11 to usr local flexlm Bruker licenses license dat I already have a Node Locked license on my SGI Can I use it on a PC No a Node Locked license can only be used on
49. ones in the Service Pack This typi cally happens when you installed recent driver software You are asked if these files should be overwritten Bruker BioSpin recommends to answer this question with No unless you are sure you want to update this file from the Service Pack 5 1 Chapter 5 Windows XP Networking In order to run XWIN NMR you must setup the network TCP IP protocol even if your PC is not connected to a spectrometer or to the laboratory network You can setup the network as a so called Domain scenario or as Workgroup scenario This chapter describes the Workgroup scenario TCP IP configuration This chapter describes how to install both the laboratory network Workgroup sce nario and the spectrometer internal network for a hp workstation xw4100 The description for other PC s with a different Ethernet card might be a little different Before you start make sure all network hardware components network card adapter cables etc are properly connected Then make a list of the following information e IP address for the PC in the laboratory network e subnet mask of the laboratory network e DNS domainname of the laboratory network e IP address of the DNS nameserver s if a nameserver exists 1 The installation of the X Server Exceed requires an installed network Furthermore the XWIN NMR license requires TCP IP to be installed 43 44 Windows XP Networking 5 1 1 5 1 2 e IP address of
50. other features of Samba can be found in usr samba docs 6 Reboot the UNIX host 7 If the Samba on the UNIX host is configured as encrypt passwords no check it in the SWAT and you want this configuration you must enable plain passwords on your PC You could do that as follows but be aware that this would create a security leak see chapter 20 4 3 a Log in as Administrator b Get the file usr samba docs WinXP_PlainPassword reg from the UNIX host e g with FTP c Execute this file by clicking on its icon in the Explorer d Reboot the PC 5 4 4 Mounting Windows XP partitions from a UNIX host using NFS If your PC is controlling a spectrometer installation of the Hummingbird NFS Server is mandatory The partition C Bruker Diskless clients spect is mounted via NFS by the spectrometer CCU which is a UNIX host In the same way you can mount any Windows XP partition or directory on any UNIX host Proceed as follows 1 Export the Windows XP partition as described in chapter 11 7 1 In step 4 you must enter the partition and optionally the UNIX host s to which it must be exported 2 On the UNIX host a Open a UNIX shell b Type su to become superuser c Create a mount directory e g mkdir ntdata d mount the partition e g e onSGI mount nthost c data ntdata e on X32 mount f NFS nthost c data ntdata 54 Windows XP Networking 5 4 5 5 4 6 Note that if the pathname on the Windows XP hosts co
51. over all drives directories and files in a two paned window 1 Click Start All Programs Accessories Windows Explorer or right click Start gt Explore 2 A double paned window Exploring appears e On the left side you see all drives and top level directories e On the right side you see the contents of the drive or directory which is cur rently selected on the left side A drive or directory can be expanded in the left pane by clicking on the button to the left of its icon The button changes to a button When you click the 177 178 File and directory handling icon itself contents of the directory will appear in the right pane A double click on the icon both expands the directory and shows its contents f D Bruker XW35 DER a File Edit View Favorites Tools Help Q sax amp i Ms Search Pp Folders gt 3 x i E Address D Bruker xw35 v gt Go Folders x Name ize Type Date Modified ao was A conf File Folder 11 12 2003 11 37 AM e O conf data File Folder 10 20 2003 10 40 AM O data Bex File Folder 8 22 2003 11 31 AM BD exp Baw File Folder 8 25 2003 8 07 PM aO cnu Qaauide File Folder 8 25 2003 8 10 PM EO guide perl File Folder 8 25 2003 8 07 PM aO perl plot File Folder 8 25 2003 8 07 PM plot prog File Folder 9 30 2003 3 52 PM O prog are File Folder 8 22 2003 11 33 AM D ar uninst File Folder 8 22 2003 11 33 AM O uninst perst visu 1 122KB ISU File 8 2
52. pro gram file When you execute the downloaded file it extracts the files There are six Windows XP Setup boot floppy disks which contain the files and drivers that are required to access the CD ROM drive and begin the setup process Note You will need to use the Windows XP CD ROM Downloading the Setup Disk Program File To download the setup boot disks please go to the Microsoft Web sites and down load e Windows XP Professional Original Version http www microsoft com downloads release asp ReleaseID 3329 1 e Windows XP Professional Service Pack 1 SP1 Note Windows XP CD ROMs that include SP1 have the text Includes Service Pack 1 on the CD ROM http www microsoft com downloads release asp releaseid 428 19 Creating the Setup Disks Note The program creates the setup boot disks for Microsoft Windows XP To cre ate these disks you need to provide six blank formatted high density disks 1 Open the Windows Explorer and change to directory with the downloaded program file 2 Double click the program file e g WinXP_EN_PRO_BF EXE for Windows XP Professional Original Version 3 A info window with the License Agreement appears Click Yes to confirm 4 A command prompt appears 176 Troubleshooting This program creates the Setup boot disks for Microsoft Windows XP To create these disks you need to provide 6 blank formatted high density disks Please specify the floppy drive to co
53. spect root unix r4600_std from server hostname 8333284 1079844827152 entry 0x80021000 CPU MIPS Processor Chip Revision FPU MIPS Floating Point Unit CP1 Revision RISC os Release 4_52 mips Version UMIPS Total real memory 16777216 Available memory 14360576 Root on nfs file Swap on nfs f Fast ethernet FEN 100 MBit s half duplex 2 hostname spect domainname software bruker de 3 Root fstype nfs Available memory 12713984 4 The system is coming up Please wait etc init d sym_install start etc init d sym_install calls sym install Adding swap device swapfile Fast ethernet FEN 100 MBit s half duplex Internet daemons portmap inetd NFS daemons nfsd biod lockd statd tmp Permission denied var tmp Permission denied The system is ready spect Console login Booting might hang stop and print an error message or go into an endless loop at one of the positions 1 through 3 This might be caused by one of the problems mentioned below Check the indicated files and correct them if necessary or per Troubleshooting 161 form the indicated steps a If booting stops at position 1 and you get the messages Fast ethernet FEN 100 MBit s half duplex No server for usr diskless clients spect root un ix r4600_std BRUKER CCU R4600 Monitor Version 5 40 MIPS OPT Wed Jun 11 19 30 43 MSZ 1997 root Memory size 16777216 0x1000000 bytes 16 MB
54. start up and have it do the installation for you That is the only way to uninstall applications under Win dows you should ever consider How does it work Appendix 217 First call the Add Remove Programs icon from the Control Panel E Control Panel BEE Eile Edit View Favorites Tools Help Oa B JO search E Folders EEF m Accessibility Add Hardware Administrative Date and Time Display Folder Options Tools Game Hummingbird Hummingbird Keyboard MKS Toolkit Controllers Inetd NFS Server Mouse Network Phoneand Power Options Printersand Regionaland Scanners and Connections Modem Faxes Language Cameras 5 o 8 P kh 8 Scheduled Sounds and Speech System Taskbar and User Accounts Tasks Audio Devices Start Menu Then make your pick from the list of applications and press the button labeled Change Remove P Add or Remove Programs To change this program or re your computer click Change Remove 5 Bruker XWIN PLOT3 5 J Bruker XWIN PLOT4 2 a f Bruker xWIN PLOTS 2 b Add Remove FE Hummingbird Exceed Sze 51 44MB eee F Hummingbird NFS Maestro Server Size 7 00MB f Microsoft NET Framework 1 1 Size 37 07MB B Microsoft Visual J NET Redistributable Package 1 1 Size 12 94MB j Set Program A Microsoft Visual Studio NET Professional 2003 English Size 386 00MB hoes a 4 MKS Platform Components 8 x m In most cases the first thing you will see is the are you sure you
55. the cursor will 193 194 Windows XP commands 18 1 3 18 1 4 18 2 change to an arrow with a question mark Now you can click a button or field you want information about The information will disappear when you click the desk top background Tips on Windows XP This window appears every time you log in unless you unselect Show this screen at startup If you want this window back click Start gt Run enter welcome click OK Click in the right window to read some tips Windows XP tips and tricks on the Web Innumerous tips and tricks on Windows XP can be found on various Web pages which are listed in chapter 21 7 Command Prompt versus Graphical Interface In a Windows environment you normally work with a graphical interface i e the Start button Icons on the desktop the Explorer etc Nevertheless Windows XP offers a Command Prompt a shell from which you can run various commands The following table compares the Command Prompt with the graphical interface Function Command Graphical Interface Prompt Files list files dir Explorer Click Drive or Folder delete a file del Right click an icon in Explorer gt Delete erase rename a file ren Right click an icon in Explorer gt Rename find text in files find Start Search For Files and Folders gt Containing text find a file Start Search For Files and Folders gt Search for Files or Folders Windows XP commands 195
56. the program reboot install the program reboot 1 Click Start Settings Control Panel 26 Installation procedure 2 Double click the icon Add Remove Programs 3 A window Add Remove Programs will appear If you want to re install the entire NMR SUITE see chapter 11 3 please remove the packages e Bruker XWIN NMR Bruker AURELIA AMIX e Bruker XWIN PLOT Bruker SBASE e Bruker ICON NMR Bruker FLEXIm e Bruker DISKLESS Bruker NMR CHECK e Bruker NMR SIM Bruker NMR GLP e Bruker NMR SUITE patches Bruker NMR GUIDE a b c d e f Note that not all of these packages are necessarily installed Select the package that you want to remove Click the button Change Remove A window Check Setup Information will appear Check if the path is correct then click OK A window Remove Programs From Your Computer will appear e A growing bar shows the progress of the de installation e When the de installation is finished click OK Repeat step b to e to remove further packages or click OK to close the window Add Remove Programs 4 Close the window Control Panel 5 Reboot the computer During the installation of the NMR SUITE several entries are made in the Windows XP Registry If an NMR SUITE package e g XWIN NMR is removed as described above the corresponding entry in the Registry is automatically deleted 2 4 Autorun of installation programs Many software packa
57. want do change the permissions in all the subdirectories of Diskless may also occur You can click OK in all these windows 106 Installing the NMR Suite 11 7 1 Configuring NFS Server 7 1 If you have NFS Server 7 1 proceed as follows 1 Create the user e diskless_user_sys with account is disabled l and the groups with no members e diskless_group_root e diskless_group_other e diskless_group_sys 2 Click Start Control Panel 3 The window Control Panel will appear e Double click the icon Hummingbird NFS Server 4 A window NFS Maestro Server will appear a Click the Exported File Systems tab NFS Maestro Server Configuration HE General Name Mapping Exported File Systems Exported Printers r List of Exported File Systems C Bruker Diskless clients spec r Exported File System C Bruker Diskless clients spect Jal I Web I ReadOnly I Lower Case M Restrict Access to Hosts spect Add M Read white Aocess Delete V Allow Access for Root User Use IP Address for Secure Access faa ten en fa Insert Bemove Cancel Apply Help 1 Creation and configuration of the necessary user and groups are most convenient if it is done in the user management tool of the management console and not in the user management of the control panel For starting the management console click right on My computer and choose mana
58. way a Press CTRL SHIFT ESC to start the Task Manager b Click Processes c Click xcpu exe d Click End Process Note that a graphics restart cannot be done by typing CONTROL Backslash in the shell window like it is possible on a UNIX workstation 3 Kill XWIN NMR in the following way a Press CTRL SHIFT ESC to start the Task Manager b Click Applications c Click XWIN NMR 3 x d Click End Task 4 Kill XWIN NMR in the following way a Find the shell window from which XWIN NMR was started b Click the X button in the upper right corner 15 4 Communication problems between PC and CCU If the acquisition zg gs wobb and or the configuration cf fails you might have a communication problem between the PC and the spectrometer CCU 15 4 1 Hardware related problems Check if the Ethernet cable between the PC and the CCU is properly connected Remove and re connect the Ethernet cable 5 If your spectrometer has a CCU 8 or older it must be upgraded with special PROMS in order to boot from a Windows XP computer There are two different sets of PROMS one for CCU 4 6 H5323 H5324 and one for CCU 8 H9133 H9134 6 Does the connection light come on if you connect CCU and ethernet board in the PC Troubleshooting 157 a If the light is off The connection light is one of the three LEDs that most Ethernet cards have One of them usually in yellow lights up the same moment that both ends of the re spective cable are conne
59. 1 Log in as Administrator Insert the CDROM Windows XP Professional Close the window Windows XP CDROM by clicking Exit Click Start Control Panel Administrative Tools Services an Aa WwW N A window Services will appear Do you see an entry Microsoft TCP IP Printing 72 Installing a Printer Yes Click Cancel and continue with step 6 No Go to chapter 6 3 1 6 Click Start Printers and Faxes 7 A window Printers will appear e Double click the icon Add Printer 8 A window Add Printer Wizard will appear a Click Next Local Printer disable Automatically detect and install my Plug and Play Printer click Next b Enable Create New Port select Type LPR Port Next 9 A window Add LPR compatible printer will appear a Enter the name of the LPD server the UNIX host b Enter the name the printer has on the UNIX host c Click OK d Close the window Printer Ports by clicking Close 10 In the window Add Printer Wizard a Click Next b In the field Manufacturers select the manufacturer of your printer c In the field Printers select your printer type d Click Next to accept the default printer name e Click Not shared Next Finish f Answer the question Was the test page printed correctly with Yes g Close the windows Printers and Control Panel by clicking the X button 6 4 2 Configuring the UNIX host to whic
60. 1 2 Spectra base 18432 K M FLEXIm 7 0 FLEXIm network license manager 2048 K M NMPR Check 2 1 Spectrometer Hardware Test Suite 4096 K MI NMP GLP 2 3 Spectrometer Validation Tool 4096 K M NMP Guide 3 1 NMR Guide and Encyclopedia 25600K SelectAll Clear All ome a Select the packages which you want to install note that DISKLESS is only required if your PC controls a spectrometer or you would like to configure him like a spectrometer control PC see chapter 13 1 2 Do one of the following e Accept the default selection sufficient for spectrometer control e Select De select packages according to your preference b Click Next 8 If the DISKLESS was selected in step 7 a window Information will appear 102 Installing the NMR Suite Information If the spectrometer CCU is booted please shut it down J To do this run telnet connect to spect login as root type jetc init 5 You can activate the WindowsNT Start menu with Ctrl Esc If the PC is not yet connected to a spectrometer or if the CCU is not booted you can promptly e click OK If your PC is currently connected to a spectrometer and the CCU is booted a Press the keys CTRL ESC to open the Start menu b Click Start All Programs Accessories Command Prompt c Enter rsh spect 1 root etc init 5 this will shut down the CCU d Enter exit e Close the window Information by clicking OK Note The CCU is now either down o
61. 2 2003 11 33 AM EO data E DelsL2 isu 19KB ISU File 8 22 2003 11 33 AM E Documents and Settings E DelsL3 isu 52KB ISU File 8 22 2003 11 33 AM Dokumente und Einstellungen E DelsL 4 isu 8KB ISUFile 8 22 2003 11 33 AM eub E DelsL5 isu ISU File 8 22 2003 11 33 AM flexim 5 DelsL6 isu ISU File 8 22 2003 1 43 PM E flexim orig E Delst7 isu ISU File 8 25 2003 8 10 PM intel E DelIsL8 isu ISU File 8 25 2003 8 10 PM E O IntePRO E DelsL9 isu ISU File 8 25 2003 8 10 PM E NutTrash E DelsL10 isu ISU File 8 25 2003 8 10 PM E Program Files S Detst11 isu ISU File 8 25 2003 8 12 PM O Programme gnu_script log Log File 8 25 2003 8 09 PM tmp B ICON NMR log Log File 8 25 2003 8 10 PM eO wnoows BD nmr _script log Log File 8 25 2003 8 10 PM H b CD RW Drive E B NMR DATA log Log File 8 22 2003 12 42 PM Control Panel Blnmreny cmd Windows NT Comm 8 25 2003 8 09 PM a Shared Documents ala 16 1 2 My Computer The My Computer window provides an overview over all drives directories and files The differences under Windows XP between the Explorer and My Compu ter are very small In fact you can use both windows with the same layout and han dling 1 Double click the icon My Computer on the desktop 2 A window My Computer will appear showing the computer s drives 3 Double click a drive e g C 4 A window showing the contents of the top level directory on C will appear Double click a
62. 26 27 B backup 168 169 199 BASH 135 Bfs 149 binary mode 183 BIOS 30 Boot Disk 166 boot partition 166 boot ini 166 Bootparam 149 Browse 27 Browsing options 179 Bruker addresses 227 Bruker FLEX m License Server 149 Bruker Utilities 42 103 109 110 129 132 164 BSMS 134 BSMS tool 41 164 C Carriage Returns 184 cat 198 CCU 53 90 99 102 156 158 159 163 cf 103 122 156 cf makelist 128 cfte 123 chown 73 Clipboard 188 191 192 196 Color Palette 34 98 154 COM2 158 159 Command Prompt 18 47 54 56 90 97 98 102 118 119 153 180 197 198 205 223 compiler 87 Compress attribute 183 184 Computer Name 31 46 config 122 confout txt 135 Control Panel 18 copy 198 cp 198 CPU 13 cu 158 CURPLOT 188 191 cut amp paste 206 207 cygwin 88 D DAEMON line 116 date 195 198 deconvolution 99 dEfAuLt 122 127 De install 26 del 165 194 198 deli 165 delp 165 Demo license 116 118 120 deselect 93 101 206 Desktop Area 98 diff 198 Disk Administrator 39 DISKLESS package 26 90 96 99 101 105 150 Display Colors 34 DNS 43 45 Domain 59 60 61 100 Domain account 59 61 98 Domain Administrator 59 60 Domain NMR Superuser 61 Domain user 59 domainname 43 44 45 73 160 double paned window 177 Download 32 33 42 65 164 DQD 126 E edhead 124 edlock 125 edo 188 190 191 edprosol 124 edscon 125 edsolv 123 edsp 125 emulation 9
63. 3 Enhanced Metafile 188 191 192 environment variable 191 Ethernet adapter 98 Ethernet cable 156 Ethernet card 13 43 115 117 Event Viewer 150 Events 150 examld 122 127 Exceed 90 92 Excel 67 expinstall 103 125 Explorer 18 47 119 204 223 F FAT 37 FAT filesystem 165 180 202 FAT32 39 FEATURE line 116 119 155 file extensions 206 find command 198 Find program 180 firewall 214 firmware 123 132 Flexlm license manager 17 26 114 116 117 118 119 120 151 155 Floating license 47 115 116 117 155 focus 18 Focus Policy 93 FTP 23 ftp 53 55 180 183 FTP Command Script 55 Full license 119 120 Full Name 143 144 full screen 196 G gateway 44 GLP 99 113 GNU gcc 87 GNU shell 183 199 206 207 GNU TOOLS 99 Good Laboratory Practice 99 GRAD tool 41 164 Graphical Interface 194 Graphics card 35 graphics card 13 Graphics driver 24 33 35 graphics restart 156 grep 198 gs 156 gserver 109 H Hardware requirements 13 hardware requirements 13 hardware exam 128 hardware_list 128 headcrash 127 helium 222 helium refill 223 heliumlog 222 help 196 199 hostid 116 117 155 hostname 31 46 47 hosts lpd 73 hp workstation xw4100 13 29 43 HPCU tool 41 164 HPPR tool 41 164 Hummingbird Inetd 149 NES Server 106 149 Port Mapper 150 Hyper Terminal 158 159 163 I ICON NMR 26 99 113 IDE 168 Input Focus 219 Installation Guide 11 installnmr 99 Internet Connection
64. 46dB 19F 26 46dB 3H E l 141345631 8 1H Ecoupler 368 1x26dB 1H m I 141361166 3 11H Ecoupler 366 2x26dB 1H E I F Ecoupler 366 1x20dB 19F E I 111301247 3 19F Ecoupler 366 2x26dB 19F 8 l 111381567 8 119F71H Ecoup 366 26 46dB 1H 26 46dB 19F 20 40dB 3H E I EJ 111391282 2 3H Ecoupler 466 2x20dB 3H E l 111391283 8l 13H Ec 8 el Tube 100 1H 19F 60Win 1606VoutE I 1 H5342 el Tube 260 1 IHPTXcus3 I Custom3 X BB 36 in 1000WoutE I HPTXcus4 I 204686 I SE451 400 SE451 RG table no Quad Mixer E l 263686 I 2662816 l RX22 RX22 RG via RS485 no Quad Mixer E I 2602811 l l H3623 l NCI Mem Ext 64kW chi EH PTS entriesi I 00173 00 MHz doubling E l 2812209 l IPTS 620D Trip 509 3 outputs 620 MHz max 309 0 8973 l PTS 626 1MHZ 1 output 620 MHz max 309 00 MHz doubling E l I 01173 6 Sample Changer seriell E I H11888 l B ACS66 6668 Sample Changer Oxford E I 141106625 l JUTU B UT20908 sep unit E l 111191054 That doesn t mean that the file is damaged it only means that the editor cannot resolve the issue One reason to pick wordpad as an editor is that wordpad unlike notepad is smart enough to render such files File and directory handling 185 Hardwa 1 exa WordPad File Edit View Insert Format Help Bie El oele an al aae S hardware exam m list of all hardware dete
65. 7 116 155 Server Visual 93 Service Pack 24 32 42 152 164 Service Tools 41 131 132 164 Services 70 71 149 152 154 setres 189 Setup program 27 65 Setup exe program 27 setupNFS 95 SetupX 91 SGI 53 54 73 115 116 120 Share Name 67 shared permissions 48 sharing 23 shortcut 17 207 212 shortcut icon 203 204 Software requirements 17 sort 198 spectrometer PC 121 Start Menu 19 subnet mask 44 45 SWAT 52 53 73 System Restore 173 System Tools 168 169 195 T tape 168 199 tar 199 202 Task Manager 18 100 156 196 Taskbar 18 19 196 205 Taskbar Properties 206 TCP IP 44 45 70 94 115 Printing 71 75 Protocol 115 Services 70 telnet 56 180 Test Tools 42 131 164 Tips 194 Toolkit for NMR Suite 17 89 90 94 96 tracert 47 transfer directory trees 55 Troubleshooting 149 205 U UNIX host 52 53 56 69 70 71 72 73 74 105 189 UNIX shell 53 70 72 197 198 199 User Accounts 141 142 User Manager 61 Username 54 141 Users and Passwords 146 V Very Important Files 137 vi 183 VIF 137 Visual C 25 87 W Web Server 24 81 Windows XP books 226 commands 12 Explorer 18 177 forget password 212 help 193 Home Edition 29 installation 29 ntbackup 168 online help 193 print spooler service 213 Professional 29 Service Pack 24 system restore 173 tips 194 tools 201 Web Pages 226 WinXP_PlainPassword 53 Winzip 184 wobb 156 Word 67 191 192 Workgroup 59 X X Server
66. Administration rights selecting WTSPEC as Domain 2 Open the User Manager and create an account for the NMR SuperUser e g with the name nmrsu see also chapter 11 1 1 and 14 1 Creating a Domain NMR SuperUser account If you prefer a Domain NMR SuperUser do the following 1 Log on at the Domain Controller BOSS as the Domain Administrator 2 Open the User Manager and create an account for the NMR Superuser e g with the name nmrsu see also chapter 11 1 1 and 14 1 Note that the installation of the NMR SUITE which must be done as local Adminis trator relies on the fact that the NMR SuperUser was correctly installed It cannot check if a Domain NMR SuperUser really exists Installing the NMR Suite The installation of the NMR SUITE involves the following steps 1 Log on as local Administrator on Windows XP Professional WTSPEC 2 Install the NMR SUITE as described in chapter 11 3 During the installation process you will be asked for the NMR SuperUser Enter the name of the NMR SuperUser account as created before see chapter 5 6 1 After the installation process NMR users cannot start the NMR SUITE yet First they must be added to the local group NmrUser Users with a local account e g localnmrusera can simply be added to NmrUser as described in chapter 14 1 3 However for users with a Domain account which is typical in a Domain scenario 62 Windows XP Networking 5 6 3 we recommend to use global gr
67. All NTFS permissions that refer to Everyone include the Guest account Sharing directories from a UNIX host using Samba If you are logged in on a Windows XP host you can access data which reside on a UNIX host using the sharing mechanism This however only works if the Samba package is installed on the UNIX host Samba is available from http www samba org samba download html Proceed as follows 1 Download the correct version samba53 or samba6x depending on your IRIX version uname r 2 Install with inst f sambaxx 2 0 xx tardist 3 Within inst use list to show information about the package and go to install it 4 After installation is done you may configure it with the SWAT tool This tool Samba Web Administration Tool is started if you enter the address http localhost 901 into your Web Browser eg Toolchest Internet gt Open Web Browser e define the workgroup in the GLOBALS section e the directories you want to share in the SHARES section e and the password encryption settings The default is no see chapter 20 4 3 but Windows XP is sending encrypted passwords by default so you have to change it in Samba or in Windows XP see step 7 5 You will find an actual describtion of the current samba version and the corre sponding installation in Windows XP Networking 53 ftp ftp bruker de pub nmr binaries indy samba x readme More information on setting up samba password encryption and many
68. B 16 256 1 no firmware for this boardversion contact your serviceoffice CPU is up to date ae communicationtest 15 seconds C B Estimated autodownload time 0 h 18 min Pe Press y to start autodownload Any other key aborts e if there is a problem with a component you get an information to contact your serviceoffice B 134 Configuration of XWIN NMR e if you need a firmware update you will get a message A with the length of time for the download C It is recommended to do the download as soon as possible During the download it is absolutely necessary that spectrometer and PC are not disturbed Make sure that no one pull out a cable out of the l spectrometer or will crash Windows XP while using it parallel Yes we know this seems very improbable but if the download would crash your board might be unusable afterwards press y gt ENTER to start the download Ks D Bruker XWIN NMR GNU bin sh exe Keyboard is date SCB L is date SCB M is date SCB R is up date Lock needs autodownload SLCB 16 256 1 no firmware for this boardversion contact your serviceoffice CPU is up to date communicationtest 15 seconds Estimated autodownload time 0 h 18 min Press y to start autodownload Any other key aborts y Lock 16 8 0 autodownload with firmware lockah hex Reading file lockah hex check HEX file Intel Erasing FLASH memory Programming record 3050 of 4940 Communica
69. BioSpin does not guarantee that this will work see chapter 6 1 1 for installation instructions Note Bruker BioSpin does not supply printer drivers for Windows XP 6 1 1 Installing a printer from the Windows XP CDROM A large number of printer drivers are available on the Windows XP CDROM Note that these are the drivers which were available at the time Windows XP was released For older printers these are usually valid For newer printers the drivers might not be on the CD or better drivers might be available Please use drivers delivered with the printer or from the Web whenever possible You can install a printer from the Windows XP CD as follows 1 Log in as Administrator 2 Click Start Printers and Faxes 3 A window Printers will appear e Double click the icon Add Printer 4 A window Add Printer Wizard will appear gt Click NEXT a Click Local Printer enable Plug and Play search mode if you want that the system looks for a new printer Click Next b A window New Printer Detection will appear e if the system finds a right printer gt Click Next e if the system does not find a printer define it manually during the next steps Click Next c Select the port to which the printer is connected Click Next d In the field Manufacturers select the manufacturer of the printer e g HP e In the field Printers select the type of the printer If your printer does not appear in the list select a related pr
70. Bruker Service tools Several tools for checking the spectrometer hardware are delivered with the NMR SUITE This includes tools for BSMS HPPR ACB GRAD HPCU RX22 You can start a service tool as follows for a full description see chapter 13 3 1 Double click the icon Bruker Utilities on the desktop 2 A window will appear with the icons Service tools Test Tools etc a Double click Service Tools to get a list of service tools b Double click Test tools to get a list of test tools 3 A windows with the available tools will appear e Double click any icon to start the corresponding tool 15 7 Windows XP Service Pack All PC s delivered by Bruker BioSpin have the latest Service Pack installed It can also be downloaded from the Microsoft Web pages www microsoft com or www microsoft de For installation just follow the given instruction on the screen Under Windows XP it is not necessary to reinstall the service pack after e g con figuring the network During the installation you might get the message that files were detected which are not the original Windows XP files and which are also part of the Service Pack Sometimes these files are even newer than the ones in the Service Pack This typi cally happens when you installed recent driver software You are asked if these files should be overwritten Bruker BioSpin recommends to answer this question with No unless you are sure you want to update this file from the Serv
71. E DE DE DE DE JE DE DE DE DE DE DE DE DE DE DE DE DE DE DE DE DE DE DE JE DE DE DE DE DE DE DE JE JE DE DE DE JE DE DE DE DE DE DE J JE J gt gt gt bsms service toolbox lt lt lt x x Version bsms Zur x Compilationdate 000519 Author R Eggli M Schenkel R Sauter Copyright c 2000 by Bruker AG Faellanden Switzerland DEDEDE DE DEDE EDE DE DE DE HE DE DE DE DE DE DE DE DE IE DE DE DE DE DE DE DE IE HE DE HE JE HE HE DE DE DE DE DE JE DE DE DE HE PE DE HE JE DE JE JE E JEJE HE JEJE EJE HE EJE EHE Press Return to abort or y to continue type y gt ENTER a dialog comes up in the command prompt Configuration of XWIN NMR 133 Main Menu lt lt lt Keyboard On Off Init BSMS Check Download all boards Show all versions Shim functions BSMS system functions Board functions CPU Board functions SCB13R Board functions SCB7 SCB13M without SCB13L Board functions SLCB Board functions LCB Board functions Keyboard without GAB Emulated functions GCB Service Quit Help t System Your choice To check and eventually download a new firmware from XWIN NMR type 2 ENTER The check starts and ends for example as shown in the following picture file scbh cnf file scb cnf file lock cnf file slcb cnf file cpu cnf E678 Doe REPORT Keyboard is up to date A SCB L i to date SCB M i to date SCB R i to date Lock autodownload SLC
72. ENTER The Windows Setup screen appears a You see at the bottom of the window Setup is loading files b You see at the bottom of the window Setup is starting Windows XP A Windows XP Professional Setup Welcome to Setup screen will appear with the Option of Continuing Setup Repair a previous installation or Quitting a Press ENTER to Continue Setup A text about the Windows XP Licensing Agreement EULA screen will appear e Press the PGDN key repeatedly until the end press F8 to accept You see at the bottom of the window Searching for previous versions of Mi crosoft Windows If you have already other Windows XP installations on your PC a list of them will occur Press ESC in order to make a new installation instead of repairing an older one If you have a couple of partitions on your hard disk a list of currently available partitions will appear a Press the ARROW UP or DOWN key to highlight the partition on which Windows XP must be installed b Press ENTER e Select Format the partition using the NTFS file system press ENTER Installing and configuring Windows XP Professional 31 9 10 11 You are asked if you really want to format this partition or want to choose a different partition After this point formatting will be started ALL DATA ON THIS PARTITION WILL BE LOST Data on other partitions which might be on the same disk remain untouched If yo
73. Firewall 214 disable 214 enable 214 IP address 43 44 45 ipconfig 47 97 98 180 ipconfig all 130 IRIX 54 J JetDirect print server 75 K kermit 158 Keyboard shortcut 196 197 L Last Known Good 174 license 113 license agreement 30 license dat 47 114 115 116 119 120 151 152 155 179 223 license bruker de 117 Imgr 114 Imhostid 118 Imutil 114 118 local Administrator 59 60 61 100 local printer 65 68 locnuc 124 Ip 198 LPD server 72 Is 198 M Mac address 117 man 199 Management Console 18 MAPI client 59 MAXENT 99 113 Microsoft Internet Explorer 4 0 56 Mixtures 99 mkdir 195 198 mount 53 54 105 163 mv 198 My Computer 18 177 178 N nameserver 43 45 nbtstat 47 net start 47 net use 47 netbios 115 netstat 47 network 12 18 24 43 47 116 208 Network transfer 54 NFS Server 17 24 53 54 89 90 94 96 105 150 NMR Suite backup 168 CDROM 11 99 114 119 151 152 commands 12 Installation 11 24 97 100 license 24 117 patches 26 103 104 programs 99 re installation 26 Release letter 11 NMR Suite in a Domain 59 NMR SUPERUSER nmrsuperuser file 46 NMR Superuser 98 NMR CHECK 99 113 117 NMR GUIDE 79 81 99 109 110 111 NMR SIM 99 103 nmr software support 12 201 nmrsu 61 98 103 NmrUser group 61 62 63 108 143 145 146 Node address 117 Node Locked license 115 116 155 notepad 179 180 198 203 NT Toolkit for NMR Suite 17 89 90 94 96
74. GMT 01 00 for Germany GMT 05 00 for the US east coast GMT 08 00 for the US west coast e click NEXT h Networking Settings wait e Enable Typical Settings gt NEXT i Workgroup or Computer Domain e To get this information contact your system administrator if you are not sure at the moment please choose No this computer is not on a network and enter the workgroup name NEXT please wait j The text Performing Final Tasks appears e please wait k The text Completing the Windows XP Setup Wizard appears e click FINISH the system will reboot D Eject the CD ROM 12 A window Network Identification will appear NEXT a Users of this computer who can log on to this computer e Enable Users must enter a user name click NEXT FINISH You can log in as Administrator using the password which you have entered during the installation 3 2 Installing Windows XP Service Pack PCs from Bruker Biospin are delivered with the latest Service Pack available at the time of delivery In contrast to Windows NT it is under Windows XP not necessary anymore to reinstall the service pack after e g configuring the network The Service Pack can be downloaded from www microsoft com or www microsoft de For installation just follow the given instruction on the screen Installing and configuring Windows XP Professional 33 3 3 Installing the Graphics driver Hewlett
75. IN NMR patches If you start Add Remove Programs from the Control Panel the NMR SUITE patches will appear as a separate package However separate removal of the patches is cur rently not supported If you remove the patches XWIN NMR will not start any more and you will have to remove and re install XWIN NMR Installing a PDF Viewer A PDF viewer is required for displaying the XWIN NMR Online Help A PDF viewer is not installed automatically as a part of XWIN NMR Bruker BioSpin recommands to use the Adobe Acrobat Reader The Acrobat Reader is avaiable from Adobe as a download http www adobe com 11 6 Configuring the automatic start of the X server o gt In some special situations it is necessary to define manually the path where the X server is located This configuration is only necessary if XWIN NMR can not start because it does not find the X server although there is a valid X server available For a detailed description of the installation and configuration of the X server Exceed please refer to chapter 10 e Click Start Control Panel MKS Toolkit e In the upcoming window click on the field NutC4 Options e In the field Category select X Windows system settings e In the field X Server settings click on other and browse for the path of exceed exe default path is C Program Files Hummingbird Connectivity 7 1I Exceed exceed exe e Click OK Installing the NMR Suite 105 11 7 Configuring NFS Server
76. If your PC is controlling a spectrometer you must configure NFS after the installa tion of the DISKLESS package part of the NMR SUITE This configuration requires that Hummingbird NFS Server is installed see chapter 10 4 Once this is installed you can mount any Windows directory from any UNIX host in your net work see chapter 5 4 4 Basically this chapter finishes the installation you started in chapter 10 4 For this configuration it is very important to turn the Simple File Sharing off 1 Double click My Computer on the desktop 2 Click on Tools select Folder Options 3 Click the View tab and then click to select the Use Simple File Sharing recommended check box to enable Simple File Sharing click to clear this check box to disable this feature 1 Click Start All Programs Accessories Windows Explorer 2 Select the directory lt XWINNMRHOME gt Diskless and click with right mouse button 3 Select in the upcoming window the entry Properties 4 Choose the folder Security 5 You should see Full Control permissions for Everyone Correct this if neces sary in the following way Click Add A window Select Users Computers or Groups will pop up choose the entry Everyone in the list Names Click Add Click OK Enable in the Permissions column Allow Full Control Click OK In most cases especially if your PC controls a spectrometer some error mes sages could appear A question if you really
77. Logon problems Last Known Good Changes in the Registry must be made with extreme care any mistakes can make the system unusable Occasionally software installations make erroneous Registry entries If your PC does not boot any more you can try to go back to the so called Last Known Good the last Registry Control Set with which the system success fully booted Please proceed as follows 1 Reboot and Interrupt the boot process hitting F8 when you see For troubleshooting and advanced startup of Windows XP press F8 2 Use the arrow down up keys to select the entry Last Known Good then press ENTER and follow the instructions Warning when you reboot the computer after you installed new software wait until all disk activity has finished before you log on As soon as you log on the current control set becomes the Last Known Good and the Original Control Set before software installation is gone Troubleshooting 175 15 16 15 16 1 15 16 2 Boot disks for Windows XP if the CDROM is not bootable If your computer does support booting from a CD ROM or if network based installation is available please use those installations methods instead The Windows XP startup disk allows computers without a bootable CD ROM to perform a new installation of the operating system Setup boot disks for Windows XP are available only by download from Microsoft If you want to download the setup disks the download contains only one large
78. NMR SUITE Office package user accounting screen and network drives etc All of these YOU will have to put back on manually In such a case it is very important to have a backup of the essential files see chapter 13 6 and 15 10 It will be many hours until you are back where you started If you have problems use the Event Viewer and the other diagnostic tools to locate the problem and cure it within Windows XP If you think you need a re install con sider an Windows XP repair Use the Windows XP restore option described in chapter 15 12 to repair Windows XP to the status of that restore point rather than doing a scratch install Re installing Windows XP is a last resort and you should have very good reason to do it Use Windows sharing rather than FTP Under Windows you locate other computers in the network with Windows Explorer and then you can use drag and drop multiple files and entire directo 23 24 Installation procedure ries You can also connect to UNIX machines in that fashion using a tool on the UNIX side called samba Installation details are in the chapter 5 4 3 Neverthe less in some cases FTP is still the easiest way to get a file quickly 2 2 Installation order A complete new installation on a PC connected to a spectrometer involves the fol lowing steps vn Aa U NY Installing Windows XP see chapter 3 1 Installing Windows XP Service Pack see chapter 3 2 Installing the Graphics dr
79. NO g for Windows XP Installation Guide Copyright C 2004 by Bruker BioSpin GmbH All rights reserved No part of this publication may be reproduced stored in a retrieval sys tem or transmitted in any form or by any means without the prior consent of the publisher revision state 2004 06 15 Product names used are trademarks or registered trademarks of their respective holders Bruker software support is available via phone fax e mail Internet or ISDN Please contact your local office or directly Address Bruker BioSpin GmbH Software Department Silberstreifen 76287 Rheinstetten Germany Phone 49 721 5161 296 Fax 49 721 5161 943 E mail nmr software support bruker biospin de FTP ftp bruker de ftp bruker com WWW www bruker biospin de www bruker biospin com ISDN on request Contents Chapter 1 1 1 1 2 1 3 1 3 1 1 3 2 1 3 3 1 3 4 1 3 5 1 4 1 5 1 5 1 LS Introduction ssssicccccicsdsccstsassscssedesuessdsencecdsosseccsesssatensconessesudccdesasseseuchesedsccesesstiececses 11 About this manual cerasi eatin ean his beanie 11 CONVENTIONS v23 25 0 035 E E E E cosh hee E 12 Hardware and software requirements for NMR Suite ce e eee eeeeseeeeeeeeeeeees 13 Special PC Hardware requirements ceceeeeseseceeeeseeseeseeseeeeeeaeeeeneeees PEE EE A 13 Spectrometer requirements 13 Avance systems with AQX A OR Tacks ra Taa aeae seo Ea E SEERE E PARE Sareri EE P
80. NTER c Only in some cases Which type of Avance Type in the kind of your Avance e g DRX ENTER d Basic 1H frequency in MHz Type in the 1H frequency e g 500 13 ENTER e The RS232 Channel for external devices Table appears Configuration of XWIN NMR 123 g h wa Check if the tty numbers of the hardware components are set correctly then click Save Only if you have a sample changer Should the Sample Changer control the Lift yes no The answer depends on how the air flow is connected normally you will answer yes gt ENTER In this cases the question appear Delay between SX and next command sec Type in the length of the delay e g 10 ENTER The nuclei table appear Check if the frequency of the nuclei are set correctly If in doubt click Re store then click Save The results of cf appears in a text window Check this list carefully and compare the result with an list from an earlier configuration if available click Print and store the paper output with your other spectrometer documentation then click OK If during cf an error message occurs that invites you to do a firmware update see chapter 13 3 Only if you have a temperature unit Continue with cfte check the tty of the temperature unit and press enter if it is correct Continue with edsolv check the list of lock solvents and click Save if it is correct 124 Configuration of XWIN NMR continue with edhead
81. Press CTRL SHIFT ESC to start the Task Manager b Click Applications c Check if any X Server programs are running d For each running X Server select it and click End Task e Close the Task Manager window by clicking the X button 4 Insert the CDROM NMR SUITE for Windows 2000 Windows XP Make sure you have the Windows XP version of it and not the UNIX version They look alike and a standard delivery contains both 5 The windows Bruker NMR SUITE Installation and Welcome to the Bruker Software Installation Manager will appear Click Next 1 If this window does not appear Autorun is probably switched off see chapter 2 4 Installing the NMR Suite 101 6 A window NMR SUITE Release Letter will appear a Click Yes to read the NMR Release letter b Please read the NMR Release letter c Close the Release Letter by clicking the X button in the upper right corner 7 A window Product Selection will appear Product selection x Selectthe products you wantto install Use the SPACE bar or click the field leftto the product name B WIN NMB 3 1 Acquisition amp Processing MI XWIN PLOT 3 1 WYSIWYG Plot Editor 10240 K MICON NMR 3 1 Automation amp Routine Spectroscopy 10240 K M NMPR DATA 3 1 NMR Example Data Sets 13312 K M Diskless 20011001 CCU Operating System 40960 K I NMR Sim 3 1 NMR experiment simulator 10240 K O Aurelia Amix Viewer 3 0 Data analysis 20480 K SBASE 1
82. QX AQR rack can be used also in a AQS rack RCU 1 2 part number Z003678 requires no specific EC level Introduction 17 e TCU3 part number H5813 requires no specific EC level with EC level between 00 recommended at least and 19 EC level 09 part number H5813 requires no specific EC level with EC level between 20 recommended at least and 29 EC level 28 1 3 3 Software requirements e Windows XP for NMR SUITE gt 3 5 e NTFS filesystem on the partition where the NMR SUITE is installed note that you can convert a FAT filesystem to NTFS see chapter 4 1 e NTFS filesystem on all partitions where XWIN NMR data are stored e Hummingbird NFS Server for spectrometer control only see Chapter 10 supported versions e Version 7 1 on CD NT Toolkit 2 for NMR SUITE e Hummingbird Exceed X Server see Chapter 10 e Version 7 1 1 on CD NT Toolkit 2 for NMR SUITE e Web Browser Internet Explorer gt 6 x CD or WWW see Chapter 7 e Web Server e g Apache on CD NMR SUITE for Windows 2000 Windows XP see Chapter 8 e Flexlm License Manager on CD NMR SUITE for Windows 2000 Windows XP see Chapter 12 e PDF viewer Bruker BioSpin recommends to use the Adobe Acrobat Reader see Chapter 11 5 1 4 Important Windows XP functions and their shortcuts The following Windows XP functions will be used regularly in this manual They can all be started in differen
83. R command Line eee esse eeeeeeeesececeeceeeesaesaeaeeeeeeeecaeceseeeeeeeaaes 205 Various useful configurations oo eee eeeereeseecseceecaecaeeseceseeseceeeeseseeeeaeeeaes 205 Configuring the Taskbar EAEE A EEE odae lea don E 205 Hide known file extensions eid iseiis i Bective ies AREE ANEA SARE E R 206 Show hidden files and folders s sssssssssssssssssssssssssssssssccesssseesesssssessessssesssessssasessssssssesessesssesessesees 206 Configuring the GNU shelli ss ci cccsssvsusscccuscssessecosetncsssstoccovansestcecosesepvensecooenevansovecesbeteasveccunepnoedossvenntnesy 206 Connecting UNIX and Windows XP with Samba oo eee ce cee ceeeeeeeeeeneeenes 207 Accessing the network share provided by Samba ou cc ceceeceesesseeseeeeeceecaeceeceeeeseesaeaeeeeseaecaeceeeeeeseenas 208 Mapping network shares into local drives cece cece ee cesesees cee ceeseeceeceesesseeseesesseecasseseeecaesesaneceeceeaes 209 Configuring Windows XP to handle UNIX style password requests cccceccesceeeseeeeeeeteeseeeeseensereneens 211 Enable Plain Text Password ovizisecssestsvecsccssesstesccndeaasiertecs RERE AANA EEA AkSen E ES 211 There is one shortcut you can try with newer samba versions s sssssesssstsesrsisesrsrtesrreressrerersreressre 212 How to log on to Windows XP if you forget your password x Method 1 Log On as an Administrator and Reset the Password eseeessssesestesreiereersrerrerrrererereesree Method 2 Use a Password
84. Reset Disk sns ssssssssenesseeessstesssstesesensstsensstsentsrseststnenssinrnnsenensereenseeessee Error Message When You Use the Add Printer Wizard ooo eee eee reece Internet Connection Firewall in Windows XP ou eee ee eeceeeeeeeeeeeeeceeseecseeaees Enable Internet Connection Firewall assises E E EA aik Disable Internet Connection Firewall sssssseesessssestesesssssreseerenesesresrerentesrerrerentsesrerttrentseseerrerentseseeret Appendix sssini essetis are resero snee s AO Windows XP Important Information about your PC sssessseeseeeeesseeerrrrerrereerereen 215 How do I remove a program 00 eeeesceeeenteceeeeeeees Configure Input Focus Move With Mouse Some notes for the helium handling 000 ee cece ceseeeeceeeeeeeeeeeeeecaeesaecneenaees Automatic notification for helium refill oo ccs cee cee ceeces cesses cesaessseceesessecasseseeecaeeesaeessesesae Helium measurement under Windows XP Service Pack Lo cese see ceesesseeceeseseeecaeeeaeecseceae 225 Upper Lower Case letters eor e e e nae en aa aa a Sa eet E ERENS 226 Books on Windows XP en iki a ieee Meee E N ARER 226 Web pages on Windows XP reene eeeseesecseececsseeseceeceseceeceseeseceseeeseeeeseseeeeaeeeaes 226 Bruker BioSpin addresses ssscccsssscsssssscsssscccsscccsssscsssssscsssseccssssessssssssssees 227 Chapter Introduction 1 1 About this manual This manual is the NMR SUITE 3 5 Installation guide for Windows XP It is availa ble
85. SPIN is not installed and configured so far All other partitions are usually empty at delivery of the PC and you can re partition them or assign differ ent drive letters An other file system format is FAT32 that has the advanced of none maximum par tition size and that could be read by windows 9x NT and 2000 Converting partitions from FAT to NTFS You see that in our case both C and D already have the NTFS file system If on your system partition D or any other partition on which you want to store NMR 40 Configuring Windows XP data is FAT you can change that from the Disk Administrator Just click All Tasks Format from the Action menu select the NTFS file system and Start formatting Be aware that this will erase the entire partition The C drive cannot be converted from the disk administrator It can however be scheduled for conversion during the next boot up In this way the entire contents ofC like Windows XP will remain intact Important This is again a critical oper ation concerning power loss If the conversion runs and the power goes away it will render the disk unusable and Windows XP must be re installed So it might be a good idea your PC to connect to an Uninterrupted Power Supply before you move on To convert a drive from FAT to NTFS without loss of data start a Command Prompt from the command menus Then type the following command on the com mand line and press return convert lt dri
86. Settings Select 256 Colors and reboot the computer see also chapter 3 4 If you get the following error message XWIN NMR requires that a suitable X Server is installed Program is exiting Hit ENTER to continue Either there is no Xserver installed in this case refer to chapter 10 3 or the au Troubleshooting 155 tomatic start of the X server does not work properly follow the instructions in chapter 11 6 e Invalid license key inconsistent license key The file License dat might contain one of the following errors e The hostid in the SERVER line is wrong e The FEATURE line contains the wrong license key the wrong date and or the wrong number of licenses e The hostid is appended at the end of the FEATURE line this is correct for Node Locked licenses but not for Floating licenses see chapter 12 1 e Invalid data returned from license server Hostname in the file License dat is incorrect e Invalid host e The file license dat contains additional characters at the end of the FEATURE line after For more information on the Flexlm license manager Click Start run enter c flex1lm bruker help index htm click OK 15 3 XWIN NMR hung up If XWIN NMR hung up please try the following steps These steps are increasingly drastic 1 Press the Esc key this will not kill XWIN NMR and might enable input again 156 Troubleshooting 2 Do a graphics restart in the following
87. U Shell ieres snee ase ia i tovteapsdaedsc eevee sesesgoay Chapter 19 19 1 19 1 1 19 1 2 19 2 19 3 Chapter 20 20 1 20 1 1 20 1 2 20 2 20 2 1 20 2 2 20 3 20 3 1 20 3 2 20 3 3 20 3 4 20 4 20 4 1 20 4 2 20 4 3 20 4 4 20 4 5 20 5 20 5 1 20 5 2 20 6 20 7 20 7 1 20 7 2 Chapter 21 21 1 21 2 21 3 21 4 21 4 1 21 4 2 21 5 21 6 21 7 Chapter 22 Useful tools for Windows XP Pissos PN ieies irsinin 201 Update the operating system s sesseeesseeseessstsrssterrsttrtstesterretetsstnteseeesresenrenenerses 201 Email notification about security fixes 201 Update of the operating syste izn oniri i rinii a o EE E E E E E EA 202 Winzip pack unpack zip tar gz uue files oo eee ceteeee cee ceeeceeeeeeeeeeeneeeaes 202 Defragment your disk Windows XP Tips and Tricks se seossossessecsoesoesooesoesoesoossoesoosoossossoossessossesssessessse 203 Creating shortcut icons on the desktop essseesessesesssessesseersresrrrrsreerssrerrsrsserssesees 203 Creatine shortcut CONS toProgtanS agiia aeria eieiei AEA EAE VEe EE NEEE EES 203 Creating shortcut icons to documents files ssssssesssssssssestetesssssisrtreetesssrsrerentetsretitrentstsrrrrnrentnrseetee 204 Convenient handling of XWIN NMR under Windows XP ou eee eeeeeeeeereeeees 204 Reading data from the Explorer into XWIN NMR ccccscsssssssesessesceeceeceeceeeeesesesaeaceaeeeceecnecaeeeeeeaeeaeeaeaees 204 Copy a text item into the XWIN NM
88. a SERR E EEAS EEE IS Eora 14 Avance systems with AQS Tack ereer psecere reirei a teeren rese ETET ECEN EE EENES EES AT EEE eti 16 Software requirements TA Important Windows XP functions and their shortcuts ssssessseeseeseesseeseeesssrssese 17 Important Windows configurations eeseeesesseseeeeseesesrseereeeseeseeeeeeseerereseeseeseesseesee Configure the Start Menu seseesseseeseeseeeesreteeserrerrresrrererseen Configure the Control Panel and the Windows Explorer PartI Windows XP Installation and Configuration Chapter 2 2 1 2 1 1 212 2 2 2 3 2 4 Installation procedure cssseeee Do s and Don ts under Windows XP Do not re install Windows XP yeiccsiscestssdessessaasdicesssnaceassiconerieasbidesvivin tases vedas edad SERTE EREE EE Eii Use Windows sharing rather than FTP oo ceececsecseceeceeeeseeaceseeeeceecaeceeceeeesaesaesaeseseeecaeeneceeeaeeass Installation order ceee ra n E ies nati REEE ise asd ta dit a A ReMOVING EXISTING SOFTWATE sarees eee eee nei i eiri Autorun of installation programs esesseessesssseseresesesseerstrsresresstssresstsstesressessressest 4 Chapter 3 3 1 3 2 3 3 3 4 Chapter 4 4 1 4 1 1 4 1 2 4 1 3 4 2 4 3 Chapter 5 5 1 5 1 1 5 1 2 5 1 3 5 2 5 3 5 4 5 4 1 5 4 2 5 4 3 5 4 4 5 4 5 5 4 6 5 4 7 5 4 8 5 5 5 5 1 5 5 2 5 6 5 6 1 5 6 2 5 6 3 5 6 4 5 6 5 5 6 6 Chapter 6 6 1 6 1 1 6 2 6 2 1 6 2 2 6 3 6 3 1 Install
89. a smarter edi tor Wordpad comes with every Windows and those that have MS Word can of course use Word to edit files in luxury 17 1 17 1 1 17 1 2 Chapter 17 Plotting and Printing under Windows XP Differences between UNIX and Windows XP Exchange of XWIN NMR data between Windows XP and UNIX XWIN NMR under Windows XP can read data which have been created with XWIN NMR under UNIX and vice versa However Windows XP data can only be read with XWIN NMR 2 5 or newer under UNIX Earlier versions of XWIN NMR cannot read data created under Windows XP Plotting and printing Under UNIX printers drivers are delivered with the NMR SUITE and printers can be installed with the XWIN NMR command cfpp Under Windows XP all common printer drivers are available and printers are installed with the Windows XP add printer tool see chapter 6 1 When a printer is installed under Windows XP it can be used for plotting from XWIN NMR and XWIN PLOT The default printer and plotter for XWIN NMR are defined during the configuration 187 188 Plotting and Printing under Windows XP of XWIN NMR by expinstall see chapter 13 1 1 An extraordinary print device in the actual dataset which is in XWIN NMR on the screen is defined as below a b c Enter edo Click the small arrow button to the right of the field CURPLOT You will see e A list of all installed printers e The entry Enhanced Metafile e The entry Clipboard
90. all a newer version Chapter 10 4 1 describes the installation of the NFS Server 7 1 from the Bruker BioSpin NT Toolkit 2 CDROM If you have the Hummingbird NFS Maestro CD be aware of the following An Evaluation CD will only work for a limited amount of time Please check if your delivery contains another NFS Maestro CD If it does this is probably the full ver sion If it does not you probably ordered an Evaluation CD Please use the full ver sion if you have one Now insert the NFS Maestro CD 10 4 1 Installing NFS 7 1 1 from Bruker BioSpin NT Toolkit 2 CD 1 Log in as Local Administrator Installing Exceed NFS Server 95 2 Insert the CDROM NT Toolkit 2 for NMR SUITE 3 Double click the icon My Computer 4 A window My Computer will appear Double click the CDROM icon 5 A window showing the contents of the CDROM will appear Double click the icon setupNFS or setupNFS cmd 6 A window Hummingbird Master Setup will appear Click Install NFS Maestro Server This window will change to the subtitle Installation Type Click Personal Installation A window Chose Setup Language will appear e Choose English USA you can choose any language you like but this description is written for the English one e Click OK A window Hummingbird Setup Wizard will appear and display several progress bars Finally it shows The Hummingbird Setup Wizard will install Hummingbird NFS Maestro Server on you
91. any windows application which is able to read metafile data from the Clipboard can import XWIN PLOT objects XWIN NMR 2 6 and newer can also import external graphics from the Clipboard 3 Another way of exporting graphics is the menu option File Export which allows you to save the complete layout in Windows Enhanced Metafile format EMP Most current graphical oriented windows applications can import this format This provides a convenient way of importing XWIN PLOT graphics into programs like Word or Powerpoint 4 Since XWIN PLOT 2 6 you can directly send your current plot as Email Just click File Send and XWIN PLOT will pop up your default mail client and add the current plot as an EMF attachment Chapter 18 Windows XP commands 18 1 Online Help Windows XP online help provides you with two kinds of help e help on specific topics e help on what you see on your screen 18 1 1 Getting Help on specific topics Click Start gt Help for a list of help topics e Click Index to get help on a predefined list of keywords e Enter the first letter s of a keyword e Click Find to get help on all keywords contained in a data base From the window which displays the help text you can go back to the main Help window by clicking Help Topics 18 1 2 The question mark in the upper right corner Several windows e g most windows which are opened from the Control Panel have a question mark in the upper right corner If you click it
92. artition c If you installed Windows XP on a different partition e g d the following files are anyhow on c ntldr ntdetect com boot ini If you are using SCSI disks with the SCSI BIOS disabled then also copy the file ntbootdd sys Troubleshooting 167 a Create a Boot Floppy Disk with the command prompt Copy these files with command prompt is easier to describe than with the Win dows explorer because these are critical system files that are normally not shown in the explorer window 1 I nAwn BW Dh Click Start All Programs Accessories Command Prompt Type c Type dir ah you should see the necessary files Type xcopy h boot ini a Type xcopy h ntldr a Type xcopy h ntdetect com a If necessary see above type xcopy h ntbootdd sys a Now you can boot your PC from the Boot floppy Be aware that this will only work if Windows XP is still on the hard disk If Windows XP is not available or corrupt it must be repaired again from CDROM or from floppy b Create a Boot Floppy Disk with the Windows Explorer 1 2 Format a floppy disk by using the Windows XP format utility Copy the ntldr and the ntdetect com files from the 386 folder on the Windows XP Setup CD ROM Windows XP Setup floppy disk or from a computer that is running the same version of Windows XP as the computer that you want to access with the boot floppy Copy the boot ini file from a com
93. at You can just copy it from the license server which can be another PC or an SGI see questions 8 and 9 in chapter 12 1 Modifying the license file To inform FlexIm about the new license proceed as follows 1 Open the Windows Explorer and go to lt Flexlm_Home gt Bruker gt Double click Lmtools exe 2 A window LMTOOLS appears Click the Start Stop Reread tab Click Stop Server Click Start Server Click ReRead License file Click OK 3 Close the window LMTOOLS by clicking the X button Further information For more information on the Flexlm license manager Click Start run enter c flex1lm bruker help index htmclick OK If XWIN NMR does not start after installing the license please check chapter 15 Chapter 13 Configuration of XWIN NMR The idea of this chapter is to give you some guidelines to full spectrometer or workstation configuration We do not discuss the commands in detail here For a full description refer to the XWIN NMR manual 13 1 Configuring XWIN NMR There are two ways to start XWIN NMR 1 Click the icon XWIN NMR on the desktop 2 Click Start All Programs Bruker NMR Suite XWIN NMR lt vers gt After the first startup of XWIN NMR you have to configure the software depends on the hardware of your spectrometer If you do this you are mainly in one of the four following situations e You have just done a software update so the old spectrometer configuration
94. ate gt INIT Can t open etc ioctl syscon errno 13 lt date gt INIT Cannot create etc utmp lt date gt INIT failed write of utmp entry y Please check diskless tree permissions and NFS User and Group Map pings see Chapter 11 8 d If you see the message mount dumpfile ASP_ST2 C Bruker Diskless clients spect dump failed during the boot process you can ignore this The CCU will boot anyway 3 Click File Exit to finish your Hyper Terminal session 15 5 Troubleshooting for NMR GUIDE If you have some trouble with your installation of the NMR GUIDE e g the gserver do not start please check the following 1 Check for the NMR GUIDE password see chapter 12 Edit the file C flexlm Bruker licenses license dat and check weather there is a FEATURE NMRGUIDE line If not enter the FEATURE line or apply for a password at license bruker de 2 Check for all necessary components e Internet Explorer gt 5 0 see chapter 7 e Web server see chapter 8 3 Install the NMR GUIDE program for the NMR SUITE 3 5 CD once again This is necessary because installation of the operating system components might have overwritten certain registry keys that are set during the NMR GUIDE installa 164 Troubleshooting tion 4 Now try the NMR GUIDE again 5 If your problem still exists please de install the Apache HTTP Server see chapter 8 reboot and install it and the NMR GUIDE again reboot once again 15 6
95. ation The installation of the NMR SUITE in a Domain involves the following steps 1 Make sure that there is a Local or Domain account for NMR Superuser or cre ate one 2 Installation of NMR SUITE by the local Administrator 3 Creation and configuration of global groups of NMR users by the Domain Administrator 4 Make sure that all nmr users have an existing HOME directory As an example we use a Domain WMRLAB with two workstations WTSPEC which controls a spectrometer and WTPROC which is used for processing The security database resides on the Domain Controller BOSS Step 2 the installation of the NMR SUITE is the same on WTSPECT and WTPROC so it will only be described for WTSPEC BOSS Win Server Domain Controller DC NMRLAB NTSPEC NTPROC xXP Professional SESER NMR Suit NMR Suite PUSES Datastation Spectrometer Windows XP Networking 61 5 6 1 5 6 1 1 5 6 1 2 5 6 2 Creating an NMR SuperUser account Before you install the NMR SUITE you have to make sure that there is an account for NMR SuperUser If there is none which you like to use create a new one According to your preference this can either be a local or a Domain account Creating a local NMR SuperUser account If you prefer a local NMR Superuser do the following 1 Log on at Windows XP Professional Workstation WTSPEC as the local Administrator or any other user who has User
96. ator rights Administra tor and root Whenever the password of one of them gets lost you can login as the Click Change an account Click the account you want to change Click Create a password Type in the password confirm it and type in a password hint gt Create Password other one open the User Manager and define a new password The creation of the new administrator account means that the user Administrator is hidden in the log in menu You are able to log in as the user Administrator by pressing twice Ctrl Alt Delete in the log in window Adding a new user in a standalone PC method 2 1 Go to the icon My Computer on the desktop gt right mouse click Manage or Open the Microsoft Explorer Go to My Computer gt right mouse click Manage 2 A window Computer Management will appear o Computer Management 3 Fie Action View window Help e Am AR e DEK ale x E Computer Management Local Bh System Tools E Event viewer 5 Application 5 Security 8 System Shared Folders Device Manager Sig Storage Removable Storage Disk Defragmenter g Disk Management Services and Applications Name Full Name Description administrator dya diskess_user m Goe G Guest Brelpassistant Grax Brower Bree G Yir SUPPORT _38 Wwa Admin aa diskless_user_sys eg teak taas ee wr CN Microsoft Corporation you Rem
97. ck Now you have to force the already running eXceed server into adopting our new 222 Appendix 21 4 setting You can achieve that by resetting the server E ier Stare J Session Startup i i Log File lockdisp in progress Maye Configuration Close Alt F4 Toolbar File z Virtual Desktop Edit gt Switch to Alternate Keyboard ese S Exceed Help As before locate the server icon on the taskbar and right click for the menu This time choose Server Reset as shown above If X related windows are open for example your XWIN NMR a lock display or the like you will receive a warning that the Exceed server will shut them all down as it resets That s OK Just confirm the warning If you had XWIN NMR running you will see the start up text window expose the messages for a graphics restart XWIN NMR 2 6 b Setting environment for using Microsoft Visual C tools CPR Path to prog C Bruker XWIN NMR prog Path to exp Bruker WIN NMR exp Path to conf C Bruker XWIN NMR conf z waiting for FLEX1m license z Your FLEX1m license is valid until may 2612 Version 2 6 b 24 Graphics restart after IO error in Klib KIO fatal IO error 83 Connection reset by peer on X server ALASKA 6 6 after 2146 requests 2143 known processed with events remaining CPR graphic server called exit 1i gt Do you want to restart the graphic server Cy or exit program n gt Cautomat
98. configuration of the NMR SUITE relies on the fact that the given HOME directory of an user exists The HOME directory cannot be created by XWIN NMR Chapter 6 Installing a Printer Printers must be installed at a Windows XP level and can then be used in XWIN NMR and XWIN PLOT 6 1 Installing a new local printer Installing a local printer implies installing the software e g the printer driver for that printer You can get printer drivers from various sources 1 From a CDROM or floppy which was delivered with the printer Please follow the instruction in the printer installation guide If you do not have one just insert the floppy or CDROM The Setup program might start automat ically If it does not open the Explorer and find a file named Setup or Install and click it From the Web Just go to the manufacturers Web home page e g www hp com www Ccanon com Or www epson com and look for Download or Drivers Usually an executable file can be downloaded which can be unpacked and installed simply by clicking on it From the Windows XP CDROM If you do not have a CDROM or floppy with printer software and no Web access you can install a printer driver from your Windows XP CD You will get 65 66 Installing a Printer a list of printers for which a driver was available at the time your Windows XP version was released If your printer type does not appear you can select a related printer However Bruker
99. configuration set tings for Exceed sw exceed cfg Xconfig File Settings Help a eyboard Input Mouse Input Communication Protocol Screen Definition Performance gs E Font Troubleshooting Power Management S ae 8 m ideo Transports Please select screen definition to bring up the relevant dialogue box for setting the Appendix 221 input focus In this box select the common settings tab Common Settings Monitor Info Use All Monitors Monitor s To Use For Screen 1 Window Made Multiple Panning Auto Load XRDB O Single m Speed Siow Eile sar tat Server Visual Auto Select vi Root Size pixels Window Manager Width fo Default To Native Eal Use Native WM for Embedded Client he o C Fit Window To Display F Cascade Windows OK Cancel Help Most likely the default setting is click which means you have to click on a win dow to make the input focus go to that window Common Settings S Monitor Info Native Window Manager Focus Policy Default Ck v Enable Server Reset Exit On Server Reset Close Warning On Exit OK Cancel Help To change the input focus policy please click on the little arrow to pull down the menu Then press OK to apply the new setting If you want to get back to the win dows default at some point please come back to this screen and set it to cli
100. cssnscatescsscuacasssacesivecceassssvecesuseabasssveuevnsssedeveuxeabaonevaas ves 158 15 4 4 Configuration of HyperTerminal 0 0 0 ee E E R E E a E a a 158 15 4 5 Usage of Hyper Terminal cno E EAE iE AREEN SA EEE 159 15 5 Troubleshooting for NMR GUIDE ssesssssreesereessrrererresrsrssesrssrerrsrerrsrenrerrsrerrsse 163 15 6 Bruker Service tools renee n e ees e a oriee ea dade Terada 164 15 7 Windows XP Service Pack sseesseessseeesesereersseeresreresrsrestesrrresrertsrentssreresrsrerensenees 164 15 8 Disk full r fragmented sieniin E E E RE 165 15 9 Creating an Windows XP Boot Disk 0 0 eee cess ceeeeeeeeeeeeeecaeeeeecaeesaesseeaees 165 15 9 PC 1s not booting from floppy erosin areca AEE E AAEE EE en tod awe hea AAR N 166 15 9 2 Floppy boots Operating System from hard disk wo cece cece sees cee ceeseeseeceeseseeeceeseseeecaesesasessecesaes 166 15 10 Backup of Windows XP and the NMR SUITE cceecssessecsecsseeecneeeceseeseeeeeees 168 15 10 t Complete Backup of the PO rrano i A TTi 168 15 10 2 Backup of specific directories isiy aes abl iret ee EEEE E E IEEE ETER 169 15 10 3 Frequent ba ck p of specific directories issiro reretia erases eves se E SP E ans PERS PEER ESSES 169 15 11 Security check of a Windows XP system sesessesessssssrssisrseisreersreerssrsresrsserrsseeees 171 15 12 Restore the Operating System to a Previous State in Windows XP ow 171 15 12 1 Using System Restore to Restore Windows XP eeeeessecseceec
101. ctable by cf To copy one of these entries into hardware_list proceed as described delete all lines except the one you want to copy vi hardware exam usable vi commands iwq hardware exam should now contain the desired entry only if available dd delete 1 line lt n gt dd delete n lines insert EC level and SN to keep data up to date vi hardware exam insert EC level and serial number iwq move hardware exam into instrument directory cat curinst mv hardware exam ea insert desired entry into hardware_list become superuser make backup su cp hardware list hardware_save vi hardware_list move cursor into line where you want to insert the new entry ir hardware exam ug PN C For Help press F1 PN D PN E Transmitter entries 91301248 91301642 91301242 91301242 41301240 ECL ol ol 1l 2 1l insert file SN finished hardware_list should now contain the new entry HHHHHHHHARRHARAHRRRHRRAAA RRR ARRHRHH ARR RAAR RR ABBR R RRR RRA RRR RBA A RAB description comment B LT3 S 20 400B X 20 40dB 1H 20 40dB 19F 20 40dB 3H B LT4 S 20 400B X 20 400B 1H 20 400B 19F 20 40aB 3H B LT4 no att X 2x20dB 1H 2x20dB 19F 2x20aB 3H B LT4 20 400B X 20 40dB 1H 20 400B 19F 20 400B 3H B LTS no att X 2x20dB 1H 2x20dB 19F 2x200B 3H x EA Thus if you see displays like the notepad example above please try
102. cted to life devices like a hub or wall socket or a com puter Check the cable or the Ethernet card with some cards you need to reboot the PC with CCU and Ethernet board being connected to make the initial con nection If the PC is started without any cable connected to the board some configurations will disable the card unless configuration takes place makes sense for unused cards however forces us to re boot more often than we might want to If you have a CCU 9 try the other 10baseT slot on the board One of the slots has two lines crossed for an inter hub connection or a direct computer to computer connection the other has a straight connection on all lines The straight cables go into the lower slot on the board crossed cables go into the upper slot of the two 10baseT slots on the CCU board Make sure you are connected to the correct socket In some cases the auto negotiate protocol of certain cards doesn t work That means CCU can t find out whether to go for 10baseT or 100baseT Some of the newer Ethernet cards allow you to switch the auto negotiate off Soft ware configuration allows you to set a fixed speed of 10 In some cases you can also force a card into 10Mbps by putting a hub a 10Mbps hub between PC and CCU The hub will tell the card to switch to 10Mbps and CCU gets around auto negotiate too If the light still doesn t come on please connect the Ethernet board with some operational network e g corporate network
103. d Pulse programs that are named different from the original Bruker BioS pin files will not be destroyed during the installation b Select Spectrometer Type Check if the highlighted system is yours change if necessary then click Proceed c Select Items for Installation Table appears Click the functions you want to activate e g all except Recompile All User AU Programs d Select the type of digitizer There is usally only one option but there could be choice In that case se lect the digitizer that you want to be used predominantly for automation 126 Configuration of XWIN NMR 13 1 2 e Select acquisition mode Select the acquisition mode Select qsim or DQD if available DOD gives the best baseline f Enter default pre scan delay DE the default is 6 us press Enter if you agree g Select printer select the printer of your choice h Select plotter select the plotter of your choice i Enter paper format type in the paper format of your choice and wait After expinstall has finished insert a sample and make sure that you can lock on the lock solvent If you have a temperature unit that edte starts without errors Type ii and read with rpar a standard proton parameter file type getprosol and rga and collect a normal IH NMR spectrum If you want to configure a processing PC like your spectrometer PC If the PC does not control a spectrometer but is used in connection with a particu lar spectrom
104. dows XP to a previous configuration that you do not want To undo the restoration 1 2 Log on to Windows as an administrator Click Start gt All Programs Accessories gt System Tools System Restore System Restore starts A window Welcome to System Restore appears Click Undo my last restora tion Next A System Restore message may appear that lists configuration changes that System Restore will make gt click OK Troubleshooting 173 15 13 15 13 1 15 13 2 5 On the Confirm Restoration Undo page click Next System Restore restores the original Windows XP configuration and then restarts the computer 6 Log on to the computer as Administrator A window The System Restore Undo Complete appears gt Click OK Turn on and turn off System Restore in Windows XP The System Restore is the feature that allows a computer system to be rolled back or restored to a point in time before certain events took place for example prior to specific software or hardware installations System Restore monitors changes to the system and some application files and automatically creates restore points You can also create your own restore points at any time In Windows XP the System Restore is enabled by default Turn on System Restore To turn on System Restore follow these steps 1 Click Start gt right click My Computer gt click Properties 2 Click the System Restore tab
105. e Bruker distribution lt XWINNMRHOME gt exp stan nmr lists pp lt XWINNMRHOME gt exp stan nmr lists cpd lt XWINNMRHOME gt exp stan nmr lists gp lt XWINNMRHOME gt exp stan nmr lists wave lt XWINNMRHOME gt exp stan nmr au sre lt XWINNMRHOME gt exp stan nmr par Configuration of XWIN NMR 139 lt XWINNMRHOME gt plot layouts Additionally the following files are also saved lt XWINNMRHOME gt uxnmr par lt XWINNMRHOME gt uxnmr info lt XWINNMRHOME gt hardware_list The options for xwinnmr save options are e help e path lt x gt e restore lt x gt lt y gt e replace e silent e spect lt x gt e verbose this message absolute path where backup tar file xwin_backup tar will be created absolute path where backup tar file xwin_backup tar can be found and abso lute path where the restoring should take place installation directory of XWIN NMR overwrite the old backup tar file do not display any messages spectrometer name e g spect default is the cur rent name print more information while backing up For safety reasons the tar file will not be replaced by executing the xwin nmr save script once again So if you like to use the script several times you have to move the xwin_backup tar file from the directory lt XWIN NMRHOME gt xwin_backup on a backup medium floppy CD and then sta
106. echanism see chapter 5 4 1 The Workgroup scenario is typically used for small networks For large networks the Domain scenario is usu ally preferred In this case one computer the Domain Controller DC maintains the security database for an entire group of Windows XP Computers A Domain user can log on at each workstation in the Domain with a single account and pass word Furthermore the Domain Administrator s account has administration rights on every computer in the Domain Nevertheless a local Administrator account exists on each computer for local administration tasks The Bruker BioSpin NMR SUITE fully supports both security scenarios The description of the NMR SUITE installation in chapter 11 3 is valid for a Workgroup scenario This chapter describes the additional installation steps which are required for a Domain scenario The NMR SuperUser see chapter 11 1 1 which is speci fied during the installation of the NMR SUITE can now be a local account or a Domain account In both cases the NMR SuperUser only needs standard access permissions The installation of the NMR SUITE however requires Administrator rights because certain system services and two user groups are installed Further more the Nmr surre must be installed as local Administrator 1 A Domain NMR Superuser is only supported in XWIN NMR 2 6 or newer 60 Windows XP Networking This means no Domain wide administrative tasks are done during the install
107. eeceeeeseesaeeeeeeseeeeaeeneee 141 14 1 2 Adding a new user in a standalone PC method 2 142 14 1 3 Adding normal users to the group NmrUser in a standalone PC eee ee ceeeeeceeceeeeeeeneceneeseeeeeeaeeneees 143 14 2 User Management in a Domain PC wo cneeseeceeeecaeeaeenecseeseenseeeeeenes 144 14 2 1 Adding a second user with Administrator rights in a domain PC 0 e cece eseeeeeeeceeeneceeceeeeseesaeeeeeeens 144 142 2 Adding a local iser inia domain PCs sissies seanser eaea a aaa ar aras PE EEEa REENE O Eitha 144 14 2 3 Adding normal users to the group NmrUser in a domain PC eee eceeecseesescnecseceeeeeseesesseseeeseeeneens 145 14 2 4 Adding a global group to the local group NmrUser in a domain PC oo ceceeeeeeneeeseeeeeeeeeeeeneens 146 PartI Tips Tricks and Troubleshooting Chapter 15 Troubleshooting esesossesoessseesoocosoocsscocesecesoosesoosssccessecesoeessosessocesseesssessssssseessss 149 15 1 15 1 1 15 1 2 The Event Viewer yoge ccgouspcccedensonensdededene gut degetdevunccactedidenelst dceaeansescussbcsdenedvecesdevevitsutde EAEE 150 15 2 XWIN NMR does not Start wo eee ese E A A aE E E ES 151 15 3 XOWIN2NMR Dune Ups sf esses erar r E E desserts KA E EEA EEEE 155 15 4 Communication problems between PC and CCU neseseessssersesereerseeerrerererrsererseen 156 15 4 1 Hardware related problems 15 4 2 Software related problems es 15 4 3 View the output of the CCU console siscsccsseccsstaces
108. eeds to run on the license server If the license manager also runs on The NMR Suite license 117 17 18 19 a license client this is simply ignored Must the Flexlm license manager run on a host with a Demo license No it only needs to run on the server for Floating licenses What can I do if XWIN NMR does not start after I installed the license See chapter 15 How is it possible that XWIN NMR starts even though I do not have a license If you do not have a license for XWIN NMR it will start up in an emergency mode if your PC is connected to a spectrometer Also one XWIN PLOT session without portfolio editor can be started from within XWIN NMR However NMR SIM NMR GUIDE and NMR CHECK will not run without a valid license 12 2 Ordering and installing the NMR Suite license 12 2 1 Ordering a license 12 2 2 You can order a license by Fax or Email from Bruker BioSpin Germany Demo licenses are free of charge for other licenses you must specify your order number Send a fax to 49 721 5161346 or an email to License bruker de specifying the hostid of your PC see chapter 12 2 2 the program for which you want to get a license e g XWIN NMR the type of license full demo processing only or teaching the number of licenses and your order number not necessary for demo license For a detailed description please refer to the license order form that is available on the Bruker BioSpin web server http www b
109. eeseesaesaeeseeeeecaeeaeceeeeaeeass 61 Installing the NMR Site ss s ccz seccsss siyedteetapendaven tbeseesd desten otesedgssdubeantestoveudatensavpoduevidlivedudeveaowentetes 61 Installing global user QrOUPS ccseesessessseeseceecseeseeeeecaecnecueceseescesseaeeseeceecaecaeceeeeseesaesaeeseeaecaeeneceeeeaeeas 62 Check for the HOME directory of every NMr USETS ceseeescesceeceeceeeseeeeseeaescescesseceecaecaeeeeeeseeaeaeateees 64 Installing a Printer cccssssseceeeeee Installing a new local printer Installing a printer from the Windows XP CDROM cescsscessescescsesseeeeeeeseeseseesceeceecaecaeseeeeeeneaeeaesaeateees 66 Remote printing from a PC to a PC 68 On the PC to which the printer is physically connected ccecescessescescsecseeeeeeeseesesceseeseeeceecnecaeeeeeneaeees 68 On the PC from which you want to print cece esc cesses cee ceeseesseceesesseecesseseeecaesesasecsesesseeseesenseaseaes 68 Remote printing from a UNIX host to a PC oo eee cseseecneceaecneeeeeeeeneeeeenes 69 On the PC to which the printer is physically connected ccccceccesseeceececseeeeeeeeeseeceseeseeeceecnecaeeeeeneaeees 69 6 3 2 6 4 6 4 1 6 4 2 6 5 6 5 1 6 5 2 6 6 On the UNIX host from which you want to print cece cee ceeseeeeceesesseecaeseseeecsecesaeessesetsesaeeaees 70 Remote printing from a PC to a UNIX host without Samba ee eeeeee 71 Configuring the PC from which you want to Print cccecesse
110. eliumlog does not work The reason is a bug in Microsoft Service Pack 1 which lets the task scheduler execute only those jobs which run under the account of the user who is currently logged on See the article in the Microsoft knowledge base http support microsoft com default aspx scid kb en us 812400 If there is always the same user logged on all the time then workaround no 1 can be applied Otherwise use the 2nd workaround e Possibility 1 The helium log runs under the local system account Change this to the user who is always logged on Click on Start gt Control Panel Task Scheduler Doubleclick on the task AT1 2 which runs at 3 00 AM Specify the user name besides Run as and set the password accordingly the user must have a password Click OK 226 Appendix e Possibility 2 Disable the HID Service Human Interface Device Access and restart the computer Note Remove this modified task before installing a new XWIN NMR version 21 5 Upper Lower case letters The Windows XP file system NTFS intentionally does not differentiate between upper and lower case letters Therefore working on a PC please observe the fol lowing 1 if you want to work with your SGI spectra on a PC avoid to create datasets with the same name differentiated only by being written in upper or lower case let ters 2 do not ignore the upper and lower case letters of NMR SUITE commands If for instance you type rpar PROT
111. em is that the editor Notepad appends the extensions t xt to files which do not have a known extension For example license dat is changed to license dat txt and thereby becomes unusable Therefore we recommend to configure My Computer such that it shows file extensions 1 Double click My Computer 2 Click Tools Folder Options View 3 Unselect Hide file extensions for known file types 4 Click OK This setting also applies to Explorer 180 File and directory handling 16 1 4 Search 16 1 5 16 2 The Windows XP Find program allows you to search files and directories accord ing to various criteria Suppose you are looking for the file named cosy a Click Start gt Search For Files or Folders or press F3 when the cursor is on the desktop background b Click the small arrow right of the field Look in select the drive on which you expect to find the file If you select My Computer all drives will be searched c In the field Named enter cosy d Click Find now All files which contain the string cosy in their name will appear in the result e g cosy cosygs pecosy You can directly open the file by clicking on it Further more you can also search for text files which contain a certain string if you define it in the field Containing Text Clicking on Search Options will show you some more parameters like Date or Size which you can added in your search options The Windows Comma
112. entry for the time the system waits for your boot selection during boot up is set to 30 seconds You can set this entry to 5 seconds which is usually enough to select a different boot mode or partition if you want to do that 3 Click OK Bruker Service tools Several tools for checking the spectrometer hardware are delivered with TOPSPIN This includes tools for BSMS HPPR ACB GRAD HPCU RX22 You can start a service tool as follows for a full description see chapter 13 3 Configuring Windows XP 1 Double click the icon Bruker Utilities on the desktop 2 A window will appear with the icons Service tools Test Tools etc a Double click Service Tools to get a list of service tools b Double click Test Tools to get a list of test tools 3 A windows with the available tools will appear e Double click any icon to start the corresponding tool 4 3 Windows XP Service Pack All PC s delivered by Bruker BioSpin have the latest Service Pack installed It can also be downloaded from the Microsoft Web pages www microsoft com or www microsoft de For installation just follow the given instruction on the screen Under Windows XP it is not necessary to reinstall the service pack after e g con figuring the network During the installation you might get the message that files were detected which are not the original Windows XP files and which are also part of the Service Pack Sometimes these files are even newer than the
113. er and its effects 00 eee eeceeeeeeeees 46 Network diagnostic commands Accessing remote files and directories Sharing directories from a Windows XP host ssssssessesceeceeeseeseseesessescescesceceecaeceeeeeseeaeaeaeeseeeseeseeeaee Enabling and disabling Simple File Sharing 0 cccceececse eee cs esee se ceeseseeecaeseseeecaeseaescseseesessesenseaes Sharing directories from a UNIX host using Samba 00 cece ce eseeeeceeeeeeecaeeesaeecsesesaeeseeseeaeseeees 52 Mounting Windows XP partitions from a UNIX host using NFS 00 cece cece eee caeeeeeee ce teeaeeneeee 53 EDP ETARE TE ES ET AA E A ESTEA Transferring single files with FIP nyrsio yi AE EET E e Renas Transferring directory trees with FTP Requirements for the Send function in XWIN NMR seeseeeseeeesererrrrerrrreererees 56 Installation and configuration of Outlook Express c cccsessessescescsesseeeeeeesesescesceeceeceeceeceeeeeeeseeaeeaeaeeees 56 Sending an e mail with Outlook Express 0 cccce cece se eeeesesesseseeeceecescaeceeseseessesaesacsessseessecsesaeseseaeaaees 59 Installing the NMR Suite in a Windows XP Domain o0 0 eee cece cee ceteeteeeeees 59 Creating an NMR SuperUser account 0 cececesecceceesesesseseesescescnecoeceeseesessessesessseecsecsesaesesseesesaesaeaaese 61 Creating a local NMR SuperUser account oeiia e aE E EE SEE EE iE aia 61 Creating a Domain NMR SuperUser account 0 0 cece eeeceeceeceeessesseeseeeeeceecaeceecee
114. eseessesseeeeeeeecaecseceeceeeesaesaesaeeeeeaeeaeeneees 171 15422 Troubleshooting naano e ER EE ES aE EEE eE EA EE E EEEE R E 172 15 13 Turn on and turn off System Restore in Windows XP sesesesesererererrrserreeree 173 TS ASe1 Turn OniSy stem Restore A E O E E N E E A eosebas 15 13 2 Turn off System Restore 15 14 Start the system restore tool from a command prompt in Windows XP 15 15 Logon problems Last Known Good ssssesesseeesssreresrssrsrestsrrsrerrsrenrssrsresrssesersestes 15 16 Boot disks for Windows XP if the CDROM is not bootable ccceeseeeeee 15 16 1 Downloading the Setup Disk Program File ice eeesseeseesseeeecsecneceeceseeacesaeseeeeeceecaecseceaeeaeesaeeaeeseeees 1916 2 Creating the Setup DISKS greiiirs crien ryostersise i acca cuaeseosavess can vesdie ecketeo ses ncabesdbncuecse dhebeopedecesgntendde cccbeassnbes 15 16 3 Using the Setup DISKS en saae ects cedastveseavasesste xs deaden esas di aatevessis raven ADS EEE SAE AERAN E ESS Chapter 16 File and directory handling ccsccsssscsssecscssecessscccsseccssssecsssssssssssscsseee 177 16 1 Viewing and opening files directories 0 0 0 cece ee eeeeeeeeeceeeeeeeeaeeeeetaeesaeeaeenaees 177 16 1 0 Windows Explorer sisser edea cc eustevees ced aula e e a s eee e e deta ee 177 16 1 2 My Computet sesiis ies iie eia eeii E A E A EE oS SEAE ESEE ERSE E E E 178 16 1 3 Explorer and My Computer can hide file extensions sssssssessssssssiseetess
115. essional nistrators RSuperUser BOSS Win XP Server Global groups SpecUser ProcUser Members of SpecUser spec_usera spec_userb NMRLAI NTP Win XP Prot ROC fessional Groups NMRUser Administrators NMRSuperUser NMRUser era Members of NMRUser Members of Localnmrusera Localnmrus NMRLAB SpectUser NMRLAB ProcUser The installation of the global user groups involves the following steps 1 2 3 Log on at the Domain Controller as Domain Administrator Create the global groups SpecUser and ProcUser Log on as local Administrator at workstation WTSPEC selecting WTSPEC as Domain described in chapter 14 2 4 group NmrUser Add the global group NMRLAB SpecUser to the local group NmrUser as Repeat step 3 and 4 for WTPROC adding NMRLAB ProcUser to the local 64 Windows XP Networking 5 6 4 Check for the HOME directory of every nmr users There are two possibilities for the HOME directory of an user local on every PC or fixed on one PC in the domain Bruker supports both scenarios the last one is a lit tle bit more convenient because the resource file used by command setres of Xwin nmr is stored in the home directory of the user If there are individual set tings it is easier to have to create this file only once and use it on all Xwin nmr installations of the windows domain Note that the
116. eter e g for setting up experiments processing and or plotting you should configure it as that spectrometer see FAQ 210 on www bruker biospin de for example the spectrometer is a DRX400 configured with the name drx400 The PC is called work1 and should be configured exactly like the DRX400 Do the following Note It is necessary to install Diskless from the Bruker BioSpin NMR SUITE CD a Copy the directory lt XWINNMRHOME gt conf instr drx400 from the spectrometer DRX400 to the workstation b On the workstation become superuser and paste this drx400 directory to lt XWINNMRHOME gt conf instr most likely this is the path c Bruker Xwin nmr conf instr c Start XWIN NMR as normal user Configuration of XWIN NMR 127 d e g h i Type edc and create a new dataset e Do not configure in the default dataset examld or dEfAuLt e You can also select an already existing dataset acquired with another XWIN NMR version Run the cf command Configuration for lt spect gt Change that y n Type in y Enter new instrument name Type in station Which type of spectrometer Avance AMX ARX ASX Datastation Type in Datastation Basic 1H frequency with offset O1 0 in MHz Confirm the default 400 13 by pressing Enter Nuclei table for BSMS b or SCM s or ignore i Type in b Save the table of basic frequencies which is displayed at the end of the cf dialogue C
117. ft Visual C if I want to If however Microsoft Visual C version 6 0 or Net is installed on your sys tem you can configure XWIN NMR to use it instead of the GNU compiler for this you have to change the file 1 If you like to work with the vi in Bruker s GNU shell it is necessary to start it with the com mand vim in this version of the GNU package 87 88 Compiling AU programs lt XWINNMRHOME gt exp stan nmr au makeau find the line opt_native 1 and remove the so that the line becomes opt_native 1 9 3 Problems with the default GNU compiler Generally the GNU compiler works properly with XWIN NMR However if you have a second copy of cygwinl d11 apart from the one delivered with XWIN NMR you might run into problems If this happens you will get the following error message You have multiple copies of cygwin1 dll on your system Search for cygwinl dll using the Windows Start gt Find Search facility and de lete all but the most recent version The most recent version should reside in x cygwin bin where x is the drive on which you have installed the cygwin dis tribution If you have a problem like this you can remove the second copy of cygwinl dll1 not the one delivered with XWIN NMR Chapter 10 Installing Exceed NFS Server 10 1 NT Toolkit CD NT Toolkit 2 CD The Bruker BioSpin NT Toolkit CDROM CD for Windows NT 4 0 contains e Hummingbird Exceed X
118. ge A new window appears where you can choose local users and groups Installing the NMR Suite 107 b c e In the field Exported File System browse for the location of the DISK LESS package For a typical installation on partition C this is C Bruker Diskless clients spect Important the Uppercase letters in this path are necessary e Select the Allow Access for Root User e Select Restrict Access to Hosts if it is not selected enter spect in the field below and click Add the name spect will appear in the list below Restricted Access to Hosts e Click Insert the name spect will appear in the Lists of Exported File Systems Click the Name Mapping tab e Click the arrow to the right of the field Load NT Names from and select the local hostname e g W MYHOST e Click Reload Names e Adding a User mapping In the field User Name select the user Administrator e In the field below that is called UID type in 0 e Click Insert e In the field User Name select diskless_user_sys e In the field below that is called UID type in 2 e Click Insert e Adding a Group mapping e Select the Group Name using the arrow button in the field below it type in the GID and click Insert e Map the group diskless_group_root as group with GID 0 e Map the group diskless_group_other as group with GID 1 e Map the group diskless_group_sys as group with GID 3 Click the General tab e Click Server S
119. ges like the NMR SUITE as well as Windows XP support the Autorun feature This means that the installation program automatically starts up when you insert the CDROM This however only works if the Autorun is ena bled If it is not nothing will happen after inserting the CDROM In this case you can start the installation program as follows Installation procedure 27 Click Start Settings Control Panel Double click the icon Add Remove Programs Click Add New Programs CD or Floppy A U N A window Install Program from Floppy Disk or CD ROM will appear The system is looking for a Floppy and or a CD ROM If there are one of these the path will be shown in the field Open Click Finish 4a If the field Open is empty a Click Browse b In the field Look in select the CDROM drive c Find an icon Setup or Setup exe d Click Setup or Setup exe or 1 Open the Windows Explorer 2 Select the path of the CDROM drive normally D 3 Double click on the file setup exe The Administrator can re enable Autorun by changing the Registry entry Warning You are about to edit the Windows Registry File This is Windows XP s nerve center and errors in your setup may render your Windows XP installation UNUSABLE Please make sure you have a recent Windows XP Repair Disk created BEFORE you proceed HKEY_LOCAL_MACHINE SYSTEM CurrentControlSet Services Cdrom Autorun from 0 to 1 Chapter 3 Installing and
120. gure game controller hardware such as joysticks and gat Configure your Internet display and connection settings Customize your keyboard settings such as the cursor blink rate and the charac Customize your mouse settings such as the button configuration double click si Connects to other computers networks and the Internet NVIDIA nVview UI control panel properties Configure your telephone dialing rules and modem settings Configure energy saving settings for your computer Shows installed printers and fax printers and helps you add new ones Customize settings For the display of languages numbers times and dates Add remove and configure scanners and cameras Schedule computer tasks to run automatically Control Panel for SoundMAX Change the sound scheme for your computer or configure the settings for you Change settings for text to speech and for speech recognition if installed See information about your computer system and change settings For hardward Customize the Start Menu and the taskbar such as the types of items to be disg Change user account settings and passwords for people who share this comput I gt Part I Windows XP Installation and Configuration 2 1 2 1 1 2 1 2 Chapter 2 Installation procedure Before you start Do s and Don ts under Windows XP Do not re install Windows XP Not only will it usually not cure the problem you also lose all additional pre installed software e g
121. h the printer is physically connected 1 Open a UNIX shell 2 Become superuser type su 3 Edit the file etc printcap and make an entry like laserjet HP lp dev plp sd usr spool lpd laserjet 1 You can check this name by logging in on the UNIX host and entering Ipstat t Installing a Printer 73 sh SEs where e laserjet is the name for the printer on the UNIX host e 1p is the port where the printer is physically connected 4 Create the spooling directory which is specified in etc printcap e g a mkdir p usr spool lpd laserjet b chown daemon daemon usr spool lpd laserjet c chmod 770 usr spool lpd laserjet 5 Edit the file etc hosts 1pd and enter two lines like viola viola netx applic com where viola is the hostname and netx applic com the domainname of the remote PC 6 5 Remote printing from a PC to a UNIX host with Samba This chapter describes how you can install a printer on a Windows XP computer when the printer is physically connected to a UNIX host e g an SGI The method described here involves the installation of Samba which also allows you to access directories on the UNIX host from the Windows XP host Alternatively you can install the printer without using Samba as described in chapter 6 4 6 5 1 Configuring the UNIX host to which the printer is physically connected 1 Get the Samba package from the Internet and install it as described in chapter 5 4 3 2 In t
122. he Classic View style e Click on the left side on Switch to Classic View Control Panel Ele Edt Qa Yiew Favorites Tools Help BB P seh 5 Folders Address Control Panel g Control Panel a Switch to Category View See Also R Windows Update Q Help and Support Name Accessibilty Options SB Add Hardware T Add or Remove Programs H Administrative Tools SE Broadcom Control Suite Date and Time Roisplay Bl Easy Access Buttons Folder Options Fonts E gt Game Controllers WP internet Options Keyboard Mouse Network Connections ENVIDIA View Desktop Manager Phone and Modem Options Power Options printers and Faxes Regional and Language Options 9 Scanners and Cameras scheduled Tasks Ealsounamax sounds and Audio Devices g Speech W System eh Taskbar and Start Menu User Accounts lt Comments Adjust your computer settings for vision hearing and mobility Installs and troubleshoots hardware Install or remove programs and Windows components Configure administrative settings for your computer Broadcom Advanced Control Suite v 6 03 Set the date time and time zone for your computer Change the appearance of your desktop such as the background screen sav Reprogram Easy Access Buttons Customize the display of files and folders change file associations and make ne Add change and manage fonts on your computer Add remove and confi
123. he SWAT see chapter 5 4 3 choose the printer according to your prefer ence All Printer that are defined in the printcap occurs in the pop up menu 3 Reboot the UNIX workstation 6 5 2 Configuring the PC from which you want to print 1 Click Start Printers and Faxes 2 A window Printers will appear 74 Installing a Printer Double click the icon Add Printer 3 A window Add Printer Wizard will appear a b c Click Network printer Click Next A window Locate your printer will appear enable one of the three fields under the point What Do You Want To Do Find a Printer in the Directory is a powerful search tool that is looking for a printer with the properties you want in the active directory if you are mem ber of domain e Click Next a window Find Printers will appear e choose the domain path in the field Jn e In the menu Features you have the possibility to enable some addi tional search modes like resolution paper size etc e Click Find Now Type the Printer Name e use this option if you already know the name of the printer you want to install use the form lt Print Server gt lt Printer Name gt or if you want to start a search in the subdomain of your network e Click Next Connect to a Printer e Use this option if you want to connect yourself to a internet printer that has an own URL adress Wait until list of shared printer
124. how to update the firmware of certain spectrometer compo nents This is only necessary if the cf command has crashed and popped up a mes sage window which informs that you have to do a firmware update of a component It is strongly recommended to do the firmware update only in this case because the hardware component could get unusable if the update would be done incorrectly Start the Service Tools of the Bruker Utilities to check the firmware version of your spectrometer hardware Double click on an icon starts an automatic procedure that will pop up a command prompt The following example shows the check of the bsms service tool C Bruker XWIN NMR G exe _ ol x DE DE DE DE DE DE DE DE DE HE DE DE DE DE JE DE DE DE DK JE DE DE DE DK DE DE DE DE DE DE DE DE DE DE DE DK DE DE DE DE DE DE JE DE DE DE JE JE DE JE DE JE JE JE JE DE DE DE DE DK DE KE J JE J DE DE DE DE DE DE DE DE DE DE DE DE DE DE DE DE DE DE DE DE DE DE DK DE DE DE JE DE DE DE DE DE DE DE DE DE DE DE DE DE DE DE DE DE DE DE DE DE DK DE DE DE DE DE JE DE DE DE DE DE DE DE DEDEDE xx EEI WARNING i i xx eK This is a hardware level debug tool x Improper operation may damage your hardware x HK x DE DE IE DE DE DE DE DE DE DK DE DE DE DE DE DE DE DE DK DE JE DK DK DK JE DE DK DE DE JE DE DK DE DE DE DE DE DE DE DE DE DE DK JE JE DE JE JE JE JE DK JE JE DE DE DE JE DK DE JE JE JE JE JE JE DE DE DE DE DE DE DE DE DE DE DE DE DE DE DE DE DE DE D
125. ic restart in 60 seconds yl Type y and then press the enter key on your keyboard This will bring XWIN NMR back up and the change to focus policy that you made above will already be in effect Some notes for the helium handling In the XWIN NMR installation path normally C Bruker XWIN NMR in the directory prog logfiles are two files named he liumlog and heli umlog err The heliumlog saves every night at 3 00 am the actual helium level in a new line The he lLiumlog err documents every error during detect ing the helium level Appendix 223 21 4 1 Automatic notification for helium refill 1 Open a Command Prompt and enter e cd d c Bruker XWIN NMR e notepad heliumlimit type in the number without of the helium level should activate the notifi cation e g 25 click file save as and save it as lt KWINNMRHOME gt heliumlimit Of course you can also install the heliumlimit file from the Explorer We have chosen the Command Prompt because the Explorer might add the perhaps hidden extension t xt to the file he liumlevel which makes it unusable see chapter 12 2 3 2 Now you could create a command script lt XWINNMRHOME gt heli umwarn cmd that will be executed if the actual helium level is the same or below the entry in in the file lt XWINNMRHOMES gt heliumlimit E g it is possible to create a message window on the screen of the spectrometer PC and or every other PC in
126. ice Pack Troubleshooting 165 15 8 Disk full or fragmented If you have disk space problems have a look at the Windows XP Online help Click Start Help Index enter increasing disk space choose one subentry and click Display If you want to defragment your disk see chapter 19 3 Note that NTFS partitions which are required for the NMR SUITE suffer much less from fragmentation than FAT partition Furthermore you might have to remove XWIN NMR data e g 1 Delete imaginary data using the deli command They are no longer needed for spectra which have been phase corrected 2 Delete processed data using the de lp command They can always be retrieved by reprocessing the data 3 Delete raw data with the del command Please make sure you have a backup of the data 15 9 Creating an Windows XP Boot Disk You can use a Windows XP bootable disk to start the operating system on a com puter running Windows XP Use the procedures in this article to work around the following boot issues e Damaged boot sector e Damaged master boot record MBR e Virus infections e Missing or damaged ntldr or ntdetect com files e Incorrect ntbootdd sys driver You cannot use the Windows XP boot disk to help resolve the following issues e Incorrect or damaged device drivers that are installed in the System folder e Boot issues that occur after you see the Windows XP startup Osloader screen 166 Troubleshooting 15 9 1 15 9 2
127. icenses 227 228 Bruker BioSpin addresses USA Bruker BioSpin Corporation 15 Fortune Drive Manning Road Billerica MA 01821 3991 Tel 1 978 667 9580 5195 center 1 978 667 9580 5444 application Fax 1 978 667 6168 center 1 978 667 2955 application http www bruker biospin com ftp server ftp bruker com Email applab bruker com center bruker com software bruker com Switzerland Bruker BioSpin AG Industriestrake 26 CH 8117 Fallanden Teds Gerad L 2825 29 1 Teh Fax 41 1 8 25 96 96 web server www bruker ch E Mail epweb bruker ch all_ap bruker ch France Bruker BioSpin S A 34 rue de l industrie F 67166 Wissembourg Cedex Tel 33 3 88 73 68 00 Fax 33 3 88 73 68 79 web server www bruker fr E Mail support rmn bruker fr customer support Bruker BioSpin addresses 229 England Bruker BioSpin LTD Banner lane Coventry CV4 9GH Tel 44 2476 855200 Fax 44 2476 465317 web server www bruker co uk Email service bruker co uk apps bruker co uk Our webpage http www bruker biospin de NMR about offices index html e provides contact adresses of our facilities and offices worldwide INDEX A ACB tool 41 164 account Computer administrator 142 Acrobat Reader 17 25 104 Add Remove 26 Adobe 17 AMIX 99 Apache web server 81 arp 47 AURELIA 99 103 Autorun
128. ields under the point What Do You Want To Do e Find a Printer in the Directory is a powerful search tool that is looking for a printer with the properties you want in the active directory if you are mem ber of domain e Click Next a window Find Printers will appear Installing a Printer 69 e Choose the domain path in the field Jn e In the menu Features you have the possibility to enable some addi tional search modes like resolution paper size etc e Click Find Now e Type the Printer Name e Use this option if you already knows whats the name of the printer you want to install use the form lt Print Server gt lt Printer Name gt or if you want to start a search in the subdomain of your network e Click Next Connect to a Printer e Use this option if you want to connect to a internet printer that has an own URL address appear within one minute click the Network Connections icon on the desktop and try to connect to the remote host Then go back to the window Connect to printer click the remote host again and see if get a list of shared printers now Wait until list of shared printers on that UNIX host appears If this list does not 4 The window Add Printer Wizard will appear a Do one of the following e Click Yes if you want to use this printer as default printer e Click No if you do not want to use this printer as default printer b Click Next click Fi
129. ies gt Windows Explorer 10 Paste it into the directory Installing the NMR Suite 111 C Document and Settings All Users Start Menu Programs Startup 11 10 3 Start the NWUR GUIDE on your spectrometer 1 Start XWIN NMR 2 Type xau guide NOTE Step 1 and 2 are only necessary if you want to use the NMR GUIDE to con trol your spectrometer and to communicate with Xwin nmr e g for the graphical display of pulse programs 3 Open the Internet Explorer 4 Open the page http Nocalhost guide manual html 11 10 4 Start the NUR GUIDE remotely 1 Make sure that the gserver is running on the desired host see chapter 11 10 1 and 11 10 2 2 Open the Internet Explorer 3 Open the page http lt hostcomputer domain gt guide manual html Chapter 12 The NMR Suite license 12 1 Questions and answers about the NMR Suite license 1 Which programs need a license XWIN NMR XWIN PLOT NMR SIM NMR GUIDE and NMR CHECK need a license However if you order a license for XWIN NMR you automatically get a license for all five programs Note that the NMR CHECK license allows you to use the program for local hardware checks but this does not include remote service time from Bruker BioSpin If you do not have a license for XWIN NMR it will start up in an emergency mode if your PC is connected to a spectrometer Also one XWIN PLOT session without portfolio editor can be started from within XWIN NMR However NMR SIM NMR GUIDE a
130. iiz cies cscs evseshss eyedasaseas odds voseassondeas devassas0d08 eos sasas EEEE EEEE Eart EIS a EAS RESH EE So RERIT eves ass Chapter 13 Configuration of XWIN NMR 13 1 Conf suring XWIN NMR a e aces bags cou bask coves betas SEA ET EE KEKS 131 1 Tf your PC controls a spectromieters sansene reee EEE E 122 13 1 2 If you want to configure a processing PC like your spectrometer PC ccecseceecseeseeeeseeeeseeeeneeecaeens 126 13 1 3 If you do not know the configuration of your spectrometer cccceseeseeseseeeceeceecaeeeeeeeseeaesaeseeeeereneens 127 13 1 4 If you added a new hardware component to your spectrometer ccececcesceeceecseeeeseeeesesceseeeceeceeeeeeneaes 128 13 2 How to use the Bruker Utilities Folder ccc ccccecsecceseseeeeseeeeeesneecnseeeesseeeeees 129 13 3 Firmware update of the spectrometer hardware 0 0 0 e cee eceseeeeseeeeceeeesetneennees 132 13 4 Configuring the BSMS Keyboard 0 00 eeeeeeeeseeeeeeecaecrseeseceseeseenseneeeenes 134 13 5 A log of the entire system configuration 00 0 cele eee eeeesceeeeeeceeeeecaeeaeeaeenaees 135 13 6 Backup of VIF s Very Important Files 137 Chapter 14 User Management csccccssssscssssssssssccsscsscsssccsssccssssescscssescssssessssssssssesssssses LGD 14 1 User Management in a standalone PC cee eeeeeseeeeeceeeceececeseeeneeceeeecaeeeeaeeenees 141 14 1 1 Adding a new user in a standalone PC method 1 eee ceeeeeesenseeseeeeeceeceec
131. ilable for others on the network to use More information you may find in chapter 5 4 3 in the directory usr samba README and usr samba docs or if you have Internet access on http samba org The license conditions are described in usr samba COPYING 20 4 1 Accessing the network share provided by Samba You can access shares from any Windows XP PC using the Run feature availa ble from the Start button Run RAEI Type the name of a program folder or document and Windows will open it for you Open dm400wb x Cancel Browse Type in two back slashes followed by the UNIX computer name this operation is equivalent to running a find on a particular computer The corresponding response shows up in a Windows Explorer window Dmx400wb ioj x File Edit View Help mtg quadcourse 1 object s selected A You can double click on the share you want to see and it will come up with either a Windows XP Tips and Tricks 209 password request for shares with managed access Enter Network Password xi You must supply a password to make this connection Cancel Resource WDMX400WBA MTG Password l IV Save this password in your password list or the list of contents in yet another Explorer window Bs DMX400WB quadcourse iof x File Edit View Help 21 object s 48 2KB If you cannot get access to a share that you see a
132. info for hostid s 0060080e830d FEATURE XWINPLOT bruker_lIs 0 000 18 mar 2014 3 6BOEFO110296AB8030FC vendor_info for hostid s 0060080e830d FEATURE NMRSIM bruker_lIs 0 000 18 mar 2014 3 4B3E307115AF211AD2C5 vendor_info for hostid s 0060080e830d FEATURE NMRGUIDE bruker_Is 0 000 18 mar 2014 3 7C3FE1B212FGB8809EG2 vendor_info for hostid s 0060080e830d FEATURE NMRCHECK bruker_Is 0 000 18 mar 2014 3 6834EDOA101EFA7798DF1 vendor_info for hostid s 0060080e830d where tulip is the hostname and 0060080e830d the hostid of the computer Note that the second part of the FEATURE lines the vendor_info does not necessarily exist In that case a FEATURE line would look like FEATURE XWINNMR3 bruker_ls 0 000 18 mar 2014 3 9B5EE07110D9CF96DOD2 To inform Flexlm about the new license proceed as follows 1 Open the Windows Explorer and go to lt Flexlm_Home gt Bruker gt Double click Lmtools exe 2 A window LMTOOLS appears Click the Start Stop Reread tab Click Stop Server Click Start Server Click ReRead License file Click OK 120 The NMR Suite license 12 2 5 12 2 6 12 2 7 3 Close the window LMTOOLS by clicking the X button Installing a full license on a license client On a license client license can be installed in two different ways as described for a Demo license chapter 12 2 3 The only difference is that you do not have to setup a new file License d
133. ing and configuring Windows XP Professional sscsssscssesseeesee 29 Scratch install of Windows XP o eeeecccccescecsseeeesececeaececeeseceesaeecsesaeecseeeeeseeessaes 30 Installing Windows XP Service Pack eee cseceseeseceseeseceseeseeeeeeeeseeeeseseaeeneeeaes 32 Installing the Graphics driver 33 Setting the Display Colors and Resolution eee ese ceceeeeeeeeeeeeeeeseeeeeeneeeaes 34 Configuring Windows XP sscccssscsssssscssscscsssecessscsssssscscsssssssssssssescsssseseens 37 Conversion of disk format from FAT to NTFS ccccccccsseeesseeceesteeceseeeesneeeeeaes 37 Check the Disk Partitioning eee eeeeeseeeeeereneeeeeeee 38 Converting partitions from FAT to NTFS 39 Cutting down the re boot time 4l Bruker Service tools cis evened eee eee rae oi Hacwe S 41 Windows XP Service Pack scssccscioed Sevesied Gidceg sad LiseesSp asd NEE a EE ATES 42 Windows XP Networking ssscscssccscsscecssscsccsssccecescsscesscsssscssscsecessesessesesees FO TCP IP configuration 143 Create a New Network Connection ccc ceceesessessesescescseceeceessesessessssesesescssceeseecessssesseseseseeseeesecaees 44 Configuring the TCP IP of an existing Network Connection cece cesesses ce teeeescneceesesseeseeaeaes 44 Configuring the TCP IP of the Spectrometer Control 00 00 cece ccsecseecesessesceeseseecaesesseecseseeseaneeseeaeaes 45 Changing the hostname of the comput
134. inter type or click Cancel and get the driver from the Web f Click Next g In the field Printer Name enter the name under which you want to use the printer or accept the default name Installing a Printer 67 h If other printers are already installed you will be asked if the new printer must be the default printer e If you want to use this printer as default printer Click Yes e If you do not want to use this printer as default printer gt Click No i Click Next j Printer Sharing Do one of the following If the printer must be available for other computers in the network e Click Shared e In the field Share Name enter the name by which the printer can be accessed from a remote host e g viola_deskjet e Click Next e A window Location and Comment appears Write in some informa tions about the location the printer administrator and individual print er specifications e g the fax default printer etc gt Click Next If this printer should only be used on the local computer e click Not shared k Click Yes to print a test page Click Next Click Finish 5 If the window Insert disk appears Insert the CDROM Windows XP Professional Click OK 6 A window Files Needed will appear e Click OK to copy the Driver files for your printer from the CD 7 A new icon will appear in the window Printers see step 3 a Click the right mouse button on the new prin
135. is backup to the media O Replace the data on the media with this backup If the media is overwritten use this label to identify the media Backup bkf created 9 22 2003 at 4 29 PM Allow only the owner and the Administrator access to the backup data Troubleshooting 171 4 Click Advanced Advanced Backup Options Back up data that is in Remote Storage ai C Disable volume shadow copy Backup Type Daily Description Backs up only files that were created or modified today 5 Click the arrow at the right of the field Backup Type and choose Daily 6 Click OK gt Click Start Backup 15 11 Security check of a Windows XP system Microsoft offers a tool for free download that checks your PC for security leaks The result is listed with an evaluation of the different topics For further details check the following Microsoft website http www microsoft com technet treeview default asp url tech net security tools Tools mbsahome asp 15 12 Restore the Operating System to a Previous State in Windows XP Use the System Restore tool in order to return your computer to a previous work ing state The System Restore takes a snapshot of critical system files and some program files and stores this information as restore points You can use these restore points to return Windows XP to a previous state 15 12 1 Using System Restore to Restore Windows XP e Windows XP Does Not Start
136. iver see chapter 3 3 Configuring the Display colors and resolution see chapter 3 4 Installing Internet Explorer 6 x see chapter 7 Step 1 to 5 are normally already done by the manufacturer 6 7 8 9 10 11 12 13 14 15 16 17 Configuring the network see chapter 5 Installing a printer see chapter 6 Configuring Internet Explorer 6 x see chapter 7 Installing and configuring theWeb Server see chapter 8 Installing and configuring the Exceed X Server see chapter 10 Configuring the Exceed X Server see chapter 10 Installing the NFS Server see chapter 10 Installing the NMR SUITE see chapter 11 3 Configuring the NFS Server see chapter 11 6 Installing the NMR SUITE license see chapter 12 Configuring of the NMR SUITE for spectrometer control see chapter 13 1 1 Installing a PDF viewer see chapter 11 5 If your PC is already in use steps 1 to 6 are probably already done In that case you can start with step 6 the installation of the network Some of the required pro grams may already be installed click Start gt Programs and look for e Exceed e NES Maestro Server Installation procedure 25 e Bruker BioSpin NMR SUITE e PDF viewer Adobe Acrobat Acrobat Reader lt version number gt 2 3 Removing existing software Windows XP is more complex than you might think Many files that are uploaded during an installation go into other parts of the system or replace existing versi
137. k Express version 6 is able to handle the default mail handling and the sim ple MAPI client as one It is sufficient to enable the setting as default mail program Do not reboot the computer now Open the Options interface again switch to the 58 Windows XP Networking Send page and select the topics as shown below Options 5 ignatures Security Connection Maintenance General Read Receipts Send Compose Sending ta Save copy of sent messages in the Sent Items folder Send messages immediately C Automatically put people reply to in my Address Book Automatically complete e mail addresses when composing Include message in reply Reply to messages using the format in which they were sent Aa Mail Sending Format 7 O HTML HTML Settings Plain Text Settings News Sending Format SP a OHTML HIML Settings Plain Text Settings Plain Text x Cece Caer Switch to the Security page and disable Warn me when other applications try to send mail as me then reboot the computer ix General Read Receipts Send Compose Signatures Spelling Security Connection Maintenance Virus Protection Select the Internet Explorer security zone to use C Internet zone Less secure but more functional disable Restricted sites zone More secure JT Wam me when other applications try to send mail as me v D
138. l 24 iene echo E requires at least EC level 35 ee ee requires at least EC level 43 CCU 09 part number H2570 requires no specific EC level TCU ae a requires at least EC level 03 eee uass8 requires at least EC level 07 requires at least EC level 03 TCU extention board part number H2562 DMX and requires DRX with more than 5 channels EC level 20 at least RCU Note normal RCUs and multiple receiver RCUs should not be mixed RCU 1 1 part number Z002488 64 kB SRAM amp IMB DRAM requires at least EC level 06 RCU 1 2 part number Z012488 256 kB SRAM amp 2MB DRAM requires at least EC level 06 RCU 1 3 part number Z022488 1 MB SRAM amp 2MB DRAM requires at least EC level 06 Introduction 15 e Multiple Receiver RCU RCU 1 4 part number Z052488 requires no specific EC level RCU 2 4 part number Z062488 requires no specific EC level RCU 3 4 part number Z072488 requires no specific EC level RCU 4 4 part number Z082488 requires no specific EC level RCU 1 5 part number Z003206 requires no specific EC level RCU 2 5 part number Z003207 requires no specific EC level RCU 3 5 part number Z003208 requires no specific EC level RCU 4 5 part number Z003209 requires no specific EC level FCUO requires at least EC level 04 FCUO for u
139. le If you have XWINNMR or XWINNMR you can only start XWIN NMR 1 x resp 2 x If more than one license is available as many copies of the program as are covered by the license can be started simultaneously 4 Which licensing program is used for the NMR SUITE The Flexlm license manager is used and is delivered on the NMR SUITE CDROM The Flexlm package occupies about 3 MByte of disk space It con tains the mgr license manager the mutil program Help files and example license dat file The NMR Suite license 115 5 What are the requirements for the Flexlm to function e your PC must have an Ethernet card e the network TCP IP must be installed e the network Service NetBIOS Interface must be installed 6 What is a Floating license Floating licenses are licenses that are available for more than one computer in a network Floating licenses are issued based on the Host ID of one particular computer This computer becomes the license server All computers that can communicate with this license server computer can use the licenses managed by this computer For this to work the same license file must be installed on all participating computers including the license server The Flexlm license man ager software must only run on the license server computer A Floating license can have just one license for a program like Xwin nmr In such a case the respective program can be started once on
140. le vi jot notepad display file contents cat type sort a file sort sort compare 2 files diff comp fc find text in file grep find find a file find Directories make a directory mkdir mkdir remove a directory rmdir rmdir copy a directory cp r xcopy change directory cd lt dir gt cd lt dir gt show current directory pwd cd Utilities time and date date date time Windows XP commands 199 Function UNIX shell Windows XP Command Prompt manual pages man help backup tar backup floppy or 18 5 The UNIX GNU shell ntbackup tape For compatibility reasons a UNIX shell is delivered on the NMR SUITE CD and automatically installed during the installation of XWIN NMR When the installation is finished you can open a GNU shell by clicking Start Programs Bruker NMR Suite gt GNU Shell A GNU shell will open in which you can enter a restricted set of UNIX commands 19 1 19 1 1 Chapter 19 Useful tools for Windows XP This chapter contains a description of some tools we found useful We realize that many other tools are available for various purposes and we are very interested in your experiences Just send your comments to nmr software support bruker de Update the operating system There are two things that help you to be up to date with the operating system e email notification about security fixes e download and installation of hotfixes and service packs Email notification abou
141. lick on OK on the listed Configuration Information Open the file lt XWINNMRHOME gt conf instr curinst as superuser Modify its entry station to drx400 save and close the file The procedure is now completed Now run expinsta11 as if you would be on a spectrometer 13 1 3 If you do not know the configuration of your spectrometer crash then you have to recreate the configuration information If you do not have any spectrometer configuration information e g after a head In this situation there are two possibilities a your spectrometer has a standard configuration b your spectrometer has a non standard configuration Case a If your spectrometer has a standard configuration then you can easily do cf and if you give the correct information for the Type of Spectrometer you will get the correct list of your hardware in the RS232 table You only have to type in the cor rect tty s of the interfaces 128 Configuration of XWIN NMR Case b If your spectrometer has a non standard configuration then the hardware configu ration is read during the cf from the file gt hardware_list file in the directory lt Xwin nmr Home gt conf instr lt spectrometer name gt Because this file does not exist you have to do the following e Enter cf makelist in the XWIN NMR window this will create a file gt hardware exam in the directory lt XWINNMRHOME gt conf instr e Open this file with a text edi
142. ll make it s title bar change from gray no focus to color has focus Many people however prefer a different setting for their NMR related activities They would rather like to see the input focus automatically shift to any window as the mouse gets moved over it This is the default used for X Windows in a UNIX based environment There are pros and cons to both concepts This chapter explains how to alter the input focus policy we can have for our NMR applications Note Please understand that the automatic focus shift per mouse over is not a Windows feature It is made possible by the Exceed emulation we use for our XWIN NMR program and will apply only to windows that are part of XWIN NMR Bruker BioSpin does not recommends to change the input focus policy To alter the settings you need to run the Exceed server It is automatically started with XWIN NMR and will stay running even as you terminate XWIN NMR Locate 220 Appendix the Exceed icon on your taskbar and right click on it to get the following menu Client Startup Session Startup Log File Mover Configuration Close Alt F4 Toolbar Virtual Desktop File Edit Switch to Alternate Keyboard Tools Server Reset Help Select Tools Configuration You will be prompted for the Exceed password you put on during installation of Exceed Xconfig x Please enter your password z Press OK when the password is entered This will bring up all
143. meter network ONLY THESE VALUES ARE VALID Do not choose different settings for the IP address or Subnet mask e Leave the Field Default Gateway empty Click OK 46 Windows XP Networking If your PC controls a spectrometer we recommend to do the following 1 Click Start Control Panel Network Connections 2 A window Network Connections will appear a Select the Adaptor to which the spectrometer CCU is connected This is nor mally but not necessarily Adaptor 2 b Right mouse click gt Properties c Disable the entry Client for Microsoft Network TCP IP by clicking on the sign to the left of the entry 5 2 Changing the hostname of the computer and its effects If you want to change the hostname of your PC you can do this in the following way IMPORTANT You also have to change the text file lt XWINNMRHOME gt conf nmrsuperuser This file contains the computer name and the Windows XP user which is the TOP SPIN SUPERUSER You can edit and change this file with a normal text editor like notepad if you are logged in as the Windows XP user which is the NURSUPE RUSER 1 Log in as Administrator 2 Click Start Control Panel Network Connections 3 A window Network Connections will appear a Click Advanced Network Identification b A window System Properties will appear c Click Network Identification Properties d In the field Computer Name enter the new hostname
144. n file or directory to select it for transfer If you double click a di rectory icon the directory will be opened and its contents will appear 6 In the window FTP Windows XP Networking 55 e Click File Depending on whether you selected a local or a remote file for transfer the com mand get or put will be available Click one of them to start the transfer 7 A window Gef or Put will appear a In the field To enter the destination name and directory If you leave this field empty the file will be copied under the same name to the directory displayed in the title bar of the directory window b Click OK 8 If you want you can store the connection to the remote host for later usage a Click File Save As b In the field File name enter any name e g wombat_john 9 Close the FTP session by clicking File gt Exit 10 In a later FTP session you can open the this connection by clicking e File Open e Double click the entry wombat_john fs 5 4 7 Transferring directory trees with FTP The Hummingbird Exceed FTP program allows you to transfer directory trees Note that this is very unusual in a Windows environment because network transfer usually takes place via sharing see chapter 5 4 1 and 5 4 3 However if you want to transfer a directory tree you can do this in the following way 1 Create a text file e g with notepad with the following contents gettree u data guest nmr dataname 2 Perform
145. n a loop and you get the messages a b like this domainname software bruker de mount root ASP_ST2 C Bruker Diskless clients spect root failed rpc status 15 PANIC vfs_mountroot cannot mount root syncing disks done then you might have one of the following problems e The Service Hummingbird NFS Server is not running Click Start gt Control Panel Administrative Tools Services Hum NFS Server Start e The path C Bruker Diskless clients spect is not ex ported see chapter 10 5 like this domainname software bruker de mount root ASP_ST2 c Bruker Diskless clients spect root failed rpc status 2 PANIC vfs_mountroot cannot mount root syncing disks done then you might have the problem that the drive letter of the diskless instal lation is written in lower case maybe caused by a custom installation To solve the problem you can either e De install Diskless and use for the new installation typical or make sure that the drive letter is upper case or e Open the file c Bruker Diskless WinApp bootparams and change all drive letters to upper case Troubleshooting 163 c If booting stops at 4 and you get messages like this lt date gt INIT Can t open etc ioctl syscon errno 13 touch etc mtab cannot create mount etc mtab No such file or directory lt date gt INIT warning etc ioctl syscon does not ex ist default settings assumed lt d
146. nd NMR CHECK will not run without a valid license ICON NMR is always used in connection with XWIN NMR and does not need an individual license AURELIA AMIX MAXENT GLP and PARAVISION do need a license which must be ordered for each program separately 2 Which license types are available and what are there contents There are four different license types Their contents restrictions and run of va lidity are listed in the following table For more information please refer to the 113 114 The NMR Suite license Bruker license order form in the help menu of XWIN NMR or on the web server http www bruker biospin de NMR nmr softw passwd docu index html or contact your local Bruker BioSpin representative XWIN NMR XWIN PLOT NMR SIM NMR GUIDE NMR CHECK Full run of validity 15 years no restrictions XWIN NMR XWIN PLOT NMR SIM NMR GUIDE NMR CHECK Demo run of validity 3 months node locked count 1 free of charge XWIN NMR XWIN PLOT Processing Onl 3 7 run of validity 15 years Linux only processing only XWIN NMR NMR SIM run of validity 15 years Teaching Node locked count 1 XWIN NMR can process only datasets which are older than 4 weeks or datasets created by NMR SIM One XWIN PLOT session without portfolio editor can be started from within XWIN NMR 3 What kind of licenses do I need If you want to use XWIN NMR 3 x you need a FEATURE line XWINNMR3 in your license dat fi
147. nd Prompt A Windows XP Command Prompt shell can be opened in three ways e Click Start All Programs Accessories Command Prompt e Click Start Run enter cmd click OK e Press CTRL ESC gt r enter cmd click OK A window will appear where you can enter Windows commands like cd dir type copy ren move notepad print ipconfig cacls telnet ftpetc The default Prompt is C gt when the computer was booted from this drive File and directory permissions Windows XP supports file level security on NTFS but not on FAT filesystems Note that TOPSPIN can only be installed on NTFS and as such it supports file level File and directory handling 181 security 16 2 1 Permissions and Types of Access Folders and files can have the following permissions Full Read amp List Folder Permission Control Modify Peace Contents Read Write Traverse Folder s me 66 no no Execute File y y y y List Polders y es es es es es no Read Data y y y y y Read Attributes yes yes yes yes yes no Rean Eatendeu es es es es es no Attributes y y y y y Create Files s iad o no no es Write Data y y y Append Data yes yes no no no yes Write Attributes yes yes no no no yes Wate Extended es es no no no es Attributes y y y Delete Subfolders 10 no no no no and Files y Delete yes yes no no no no Read Permissions yes yes yes yes yes yes Change Permissions yes no no no no no Take Ownership yes no no no no no Synchronize ye
148. nd you are confident that the password is correct please see chapters 20 4 3 and 20 4 4 To copy files you can drag and drop them from a content display and deal with files and directories as if they where local e g you can drag and drop acqu files into a Wordpad icon on you desktop Technically the job of making a connection is completed here 20 4 2 Mapping network shares into local drives For some applications including XWIN NMR you will need however to map the 210 Windows XP Tips and Tricks network share to a virtual disk drive That is You create a look alike of a local drive like say U that points to the share you assign to it Doing this is very simple Step 1 click with the right mouse button on the share you want to map to a disk drive C Dmx400wb OF x File Edit View Help Explore 2x Add to Zip zxdata Map Network Drive Assigns a dris Create Shortcut Properties Select Map Network Drive as shown Step 2 Select an appropriate drive letter here U and decide whether or not to click the reconnect at logon box If you want a permanent connection that auto matically is re established any time the client PC is booting up click this box If you don t check it this connection will only last until the next reboot Map Network Drive 2 xi ove e Path WOM gt lt 400WB quadcourse Cancel I Reconnect at logon Step 3 Press OK
149. nfiguring Windows XP 39 If this is the first time you start Disk Administrator you probably see two informa tion screens which you can confirm by clicking OK respectively Yes Disk Administrator x A Disk Administrator has determined that this is the first time Disk Administrator has been run or that one or more disks have been added to your computer since Disk Administrator was last run System configuration will now be updated Confirm A If you choose not to write a signature the disk will be marked OFF LINE and be inaccessable to the Windows NT Disk Administrator program Do you want to write a signature on Disk 0 so that Disk Administrator can access the drive 4 1 2 No signature found on Disk 0 Writing a signature is a safe operation and will not affect your ability to access this disk from other operating systems such as DOS E No Finally the disk administrator will show you how many disk drives your system has and how they are partitioned Some PCs are delivered with one large partition C that takes virtually all the space on the first disk Please realize that repartitioning the C partition involves re installing Win dows XP Also the maximum partition size with FAT is 4 GByte with NTFS 7 8 GByte Nevertheless if you decide to make changes in the partitioning now is a good time to do it because you did not invest too much time in configuration and installation yet e g the TOP
150. ng To check the configuration of the disk s of your PC please start up the Disk Administrator utility from the command menus as shown below 1 Click Start Control Panel Administrative Tools Administrative Tools DER A File Edit Yiew Favorites Tools Help Q pax Q w Ki Search gt Folders gt x id Ez Name Size Type Date Modified 3 Component Services 2KB Shortcut 11 3 2002 1 29 AM 2 computer Management 2KB Shortcut 9 16 2003 2 52 PM Ed Data Sources ODBC 2KB Shortcut 11 3 2002 1 35 4M i Event Viewer 2KB Shortcut 11 3 2002 1 35 4M ee Local Security Policy 2KB Shortcut 9 5 2003 9 05 AM iG Performance 2KB Shortcut 11 3 2002 1 35 4M By Services 2KB Shortcut 11 3 2002 1 35 AM 2 Click on Computer Management Disk Management Computer Management DER B Fie Action View Window Help e amp E Computer Management Local volume Layout Type File System status Capacity Free Space Free Faut Tolerance Overhead A System Tools Local Disk C Partition Basic NTFS Healthy System 76 33GB 72 50GB 94 No fj Event Viewer Shared Folders K 2 Local Users and Groups Performance Logs and Alerts Device Manager Removable Storage Disk Defragmenter Disk Management EJ Services and Applications amp PDisk 0 Basic fe Disk C 76 33 GB 176 33 GB NTFS Online Healthy System Scp romo DVD 0 No Media BB Primary partition Co
151. nge Full Full Full Full Control Control Control Control 1 Level 1 My Documents Private Only the owner of the file or folder has the permission to read and write to the file or folder All subfolders that are contained within a folder that is marked as private remain private unless you change the parent folder permissions The op tion to make a folder private is only available to a user account in its own My Documents folder Windows XP Networking 51 To Configure a folder and all of the files in it to Level 1 a Right click the folder gt click Sharing and Security b Click to select the Make this Folder Private check box gt click OK 2 Level 2 Default My Documents Default Only the owner of the file folder and a local administrator have the permission to read and write to the file folder This is the default setting for all of the folders and files in each user s My Documents folder To configure a folder and all of the files in it to Level 2 a Right click the folder gt click Sharing and Security b Ensure that both the Make this Folder Private and the Share this folder on the network check boxes are cleared click OK 3 Level 3 Files in Shared Documents Available to Local Users Files are shared with users who log on to the computer locally Local adminis trators and Power Users can read write and delete the files in the Shared Doc uments folder Restricted Users can only read the files in this folder
152. nish 6 3 Remote printing from a UNIX host to a PC 6 3 1 On the PC to which the printer is physically connected Install the printer as described in chapter 6 2 1 1 Log in as Administrator 2 Insert the CDROM Windows XP Professional 3 Close the window Windows XP CDROM by clicking Exit 4 Click Start Control Panel Network Connection 70 Installing a Printer 6 3 2 5 A window Network and Dial up Connection will appear e Click on the pull down menu Advanced Optional Network Component 6 A window Optional Network Component will appear e Enable Other Network File and Print Services e Click on Networking Services to highlight it then click Details e enable Simple TCP IP Services OK e The check box for Other Network File and Print Services is now white and that one for Networking Services grey and both have a tick click Next 7 Click Start Settings Control Panel Administrative Tools gt Serv ices 8 A window Services will appear a Scroll down and check the following entries e Simple TCP IP Services e Print Spooler e TCP IP Print Server If one of these entries is set to manual e Click that entry to highlight it e Click Action Properties Startup type select Automatic gt OK 9 Click Start Shut Down Restart the computer Yes On the UNIX host from which you want to print On the UNIX host you must setup a network printer as f
153. nsaetesascdesnubetssasssdbvasideeseesss 94 10 4 1 Installing NFS 7 1 1 from Bruker BioSpin NT Toolkit 2 CD oo cece ce ceesee cee teeseeseseeseneeaee 94 10 5 Configuring the NFS Server for spectrometer control 0 0 eee ee eeteeeeeeeeeeeeees 96 Chapter 11 Installing the NMR Suite ccsssscsssscccsscecessceccsssccccssecssssessssssssssssssssssenn 7 11 1 Preparing for the NMR Suite installation 97 111 1 The NMR SuperUser icici cee ceccedesssnecceccessosestcrdbcdsosansccestednsvacscedeseavausceucueonsoncucedegadonesdevevasoaoadercuageasnosdece 98 11 1 2 How to change the nmrsu after installation of NMR SUITE 98 111 3 Converting FAT filesystem to NIFS secs cc ssiseiescsscesnagdeaqesedsusesbgestaeds abdedsivdssepsscdecsdasosevanedoisssesbessaadis 99 11 2 Packages on the NMR Suite CDROM 1 99 11 3 Installing the NMR Suite 2c sccscccsccccess sade svesscestesassesea sabe covastesgncdnantersstonuedves riae 100 11 4 Installing NMR Suite patches 0 eee ceceeseceeceseeeeeeseeeeeeaeeeeeeneseeecaeesaesaeenaees 103 11 5 Installing a PDP Viewer sndaneoriv noian een ena oa eee OA al nes psa 104 11 6 Configuring the automatic start of the X server ele eee eee eeceeeeeecneeeeeteeneees 104 11 7 Configuring NES Serveto 5 ities sscessesunss s aa ESA EENE eRe Eeo o SRA EEEE 105 11 7 1 Configuring NFS Server 7 1 sivss sec osrnrisraseir t r aE AEAEE ESAE E 106 11 8 Adding a user to the group NmrUser sssssssesseseeeesseee
154. nstallation was tested on a hp workstation xw4100 PC with a NVIDIA Quadro4 380 XGL graphics card and two Broadcom NetXtreme Gigabit Ether net cards Spectrometer requirements XWIN NMR 3 5 is released for datastations and Avance spectrometers Systems that are working well with XWIN NMR 3 0 or 3 1 do not need any hardware upgrade Systems that are upgraded from XWIN NMR lt 2 6 have to have at least the EC lev els that are shown below Those hardware components that are not listed here are independent of a special software version and can be used with every NMR SUITE version If you have an older EC level update to the most recent one e g TCU3 actual EC level 29 Please note that AQS and AQX AQR components cannot be interchanged If your Avance spectrometer does not meet the above specifications please get in touch with your local Bruker representative for your upgrade options 1 Itis recommend not to use shared memory graphics because in some cases memory problems could be observed 14 Introduction 1 3 2 1 Avance systems with AQX AQR rack CCU The following EC levels are required for all spectrometers with Windows they are not specific to XWIN NMR 3 5 WINDOWS the following EC levels are necessary CCU 04 part number H2552 requires at least EC level 04 pe coca ice iat requires at least EC level 05 EETA eee requires at least EC leve
155. ntains uppercase let ters these must also be specified with the mount command Important on a SGI with IRIX 5 XWIN NMR cannot read data which reside on an NFS mounted WindowsNT 2000 partition This is an error in Hummingbird NFS Server 5 14 and is fixed with version 6 1 with the configuration as NFS2 The problem does not occur with IRIX 6 FTP Network transfer under Windows XP is generally done via the directory sharing as described in chapter 5 4 1 and 5 4 3 Nevertheless Windows XP supports transfer via FTP Just enter ftp hostname from a Command Prompt and you can transfer files Transferring single files with FTP 1 Click Start All Programs Hummingbird Connectivity V7 1 1 Host Explorer FTP for Windows 2 The window FTP will appear 3 A window showing the directory tree on the local host will appear 4 A window Open Connection will appear a In the field Server Name enter the name of the remote host e g wombat b In the field User Name enter your username e g john c In the field Password enter your login password d Click Open Note that you can also log in as any other user if you know the password 5 In the window FTP you will see two windows e The directory tree on the local host Here you can select files which you want to put on to the remote host e The directory tree on the remote host Here you can select files which you want to get from the remote host Click an ico
156. ny icon Depending on the file type one of the following will hap pen e A directory Folder will be opened and its contents will be shown e An executable program will be started File and directory handling 179 16 1 3 e A text file will be opened using an editor by default notepad e For an unknown file type a window Open with will appear showing a list of available programs If you click a directory icon two things might happen e the directory contents appears in a new window e the directory contents replaces the contents of the current window You can configure this feature according to your preference a Double click the icon My Computer on the desktop b Click Tools Options c A window Options will appear e Click General and select one of the two options of Browse Folders The disadvantages of a separate window for each directory is that your screen is soon filled up with windows However a quick way of closing an entire hierarchy of windows is the key combination ALT SHIFT F4 If you want the explorer layout as a two paned window select View Explorer Bar and enable Folders You are not able to store this configuration this might be the biggest difference between the Explorer and My Computer Explorer and My Computer can hide file extensions Windows XP Explorer and My Computer allow you to hide known file extensions like txt fm doc etc One of the problems when you hide th
157. o create a system variable to define the installation path as LM_LICENCES_FILE This may cause some problems with other applications using the FlexLM oe 13 If you selected NMR SIM AURELIA and or SBASE for installation several dia log windows will appear Follow the prompts until you reach step 14 14 A window Setup is complete will appear e You will be asked if you want to restart the computer a Click Yes I want to restart my computer now b Click Finish to reboot the computer 15 After the PC has booted up press the reset button on the CCU or turn it on with the key if it was switched off 11 4 Installing NMR Suite patches Bruker BioSpin recommends to install the latest NMR SUITE patches available First check the current patchlevel on your system by clicking on the icon Bruker Utilities on the desktop Then click Miscellaneous Patchlevel and the current patchlevel will appear Now check if the Patchlevel on the Bruker BioSpin web server is higher than on your system 1 Certain commands like cf and expinsta11 ask for the NMR SuperUser password 104 Installing the NMR Suite o 11 5 http www bruker biospin de NMR nmrsoftw passwd updates pc index html All patches are contained in one self extracting file with the extension exe Just copy this file to your PC and then click its icon An install shield will appear follow the instructions to install the patches Never remove the XW
158. o not allow attachments to be saved or opened that could potentially be a virus Secure Mail Digital IDs also called certificates are special Tell me more Ra documents that allow you to prove your identity in electronic transactions Digital IDs To digitally sign messages or receive encrypted messages you must have a digital ID Get Digital ID JT Encrypt contents and attachments for all outgoing messages T Digitally sign all outgoing messages To disable this warning might be a security leck If you do not disable this warning you get a warning every time if ICON NMR send an e mail Windows XP Networking 59 5 5 2 5 6 Sending an e mail with Outlook Express Fill in the correct recipient s address Click the Send button If you want to use an e mail application not mentioned here make sure it has some use as simple MAPI client feature and activate it Installing the NMR Suite in a Windows XP Domain Windows XP provides two different security scenarios for computer networks the Workgroup and the Domain scenario With a Workgroup scenario each computer has its own local security database of user accounts and passwords This means that users from workstation A are not known at workstation B They might have the same name on both workstations but internally they are represented by two dif ferent security identifiers Users from workstation A can access files on worksta tion B via the sharing m
159. o your preference d Click in the field Advanced gt Monitor REFRESH FREQUENCY and select the maximum frequency for your monitor and the resolution selected in step c check the documentation of your monitor If you do not know this just select one e g 75 HZ and see if it works see step 6 e Click Apply 6 A window Default Monitor will appear a Click OK b Answer the question Do you want to keep these Settings by clicking Yes 7 Click OK OK Important If you do not test you might end up with a blank screen and no easy way back This color setting is mandatory and XWIN NMR will not start if the colors are set to more than 256 You will get a message like CPR Path to prog c Bruker xwin nmr prog CPR Path to exp exp CPR Path to conf conf CPR waiting for FLEX1m license CPR Your FLEX1m license is valid until 16 may 2018 compare source with dest 1 different colorcells Graphics restart after normal error in Xlib X Error of failed request BadValue integer parameter out of range for operation Major opcode of failed request 91 X_QueryColors Value in failed request Oxffffff Serial number of failed request 1676 Current serial number in output stream 1676 Program is exiting 4 1 Chapter 4 Configuring Windows XP Conversion of disk format from FAT to NTFS Windows XP supports three file systems for fixed disks FAT16 FAT32 and NTFS
160. oO field Hz power level roesy spin lock PROE 02 T cw irradiation PLOW 50 420 calc field Hz cw irradiation PLOW M NOE diff irradiation PLNOE homo decoupling PLHD band homo decoupling PLHC Standard hard pulses C Standard soft pulses Save Copy to probe Print screen Exit check the parameters for your favourite nuclei change them and calculate them if necessary then click Save to store to disk Continue with locnuc Configuration of XWIN NMR 125 check the lock nucleus most likely 2H press Enter if correct e Continue with edlock check the lock table values field lock phase change them and click Save if necessary otherwise click Abort Continue with edscon check the spectrometer constants change it and click Save if necessary oth erwise click Cancel Continue with edsp check the routing change it and click Save if necessary otherwise click Can cel Continue with expinstall a Click OK if you either have no modified Bruker BioSpin Parameterfiles lt expinstall gt 3 0 b14_1H 1 1 d svcu nmr Standard experiment conversion and AU program compilation Please archive all your MODIFIED Bruker PARAMETER files AU programs and PULSE programs e g cd fu tar cvd exp OK Cancel AU programs and Pulse programs or if you have archive them in a dif ferent directory Your individual Parameterfiles AU programs an
161. of Bruker Utilities there are several parameters and path entries defined Type in perl bin per prog bin installamr lt X WINNMRHOME gt lt NAMEofNMRSU gt If you installed NMR SUITE in the default directory and you like to use the user Administrator as NMR SuperUser you have to type in perl bin per prog bin installnmr C Bruker X WIN NMR Administrator Note You can use this command also for recreating the default permissions of installed Bruker files and directories Converting a FAT filesystem to NTFS The NMR SUITE can only be installed on a NTFS filesystem not on a FAT file sys tem However you can convert FAT to NTFS as described in chapter 4 1 2 Packages on the NMR Suite CDROM p pa A U N ee Nan eR wD XWIN NMR Acquisition and processing software XWIN PLOT Object oriented WYSIWYG plot editor ICON NMR Icon driven interface for Routine Spectroscopy and Automation NMR GUIDE Web browser based teaching and training program DISKLESS Spectrometer CCU operating system NMR CHECK Program for local spectrometer checks or remote service NMR SIM Program for numerical simulation of NMR experiments MAXENT 1D 2D 3D spectrum deconvolution requires separate license AMIX Viewer new multiple object viewer requires a separate license AURELIA Analysis of 2D 3D 4D NMR data requires separate license AMIX Analysis of Mixtures requires a separate license GLP Program fo
162. of the software is still known to the new version go to chapter 13 1 1 e You want to configure a only processing PC like your spectrometer PC so you have the spectrometer configuration on another computer gt go to 121 122 Configuration of XWIN NMR chapter 13 1 2 You have to configure the software on a new hard disk without a backup of the spectrometer configuration so you have no configuration files anymore go to chapter 13 1 3 You have a new spectrometer hardware component so you have no configuration file so far go to chapter 13 1 3 13 1 1 If your PC controls a spectrometer 1 Be sure that the spectrometer is booted see chapter 11 3 and 15 4 3 2 Type edc and create a new dataset Do not configure in the default dataset examld or dEfAuLt You can also select an already existing dataset acquired with another XWIN NMR version 3 Enter config A window configure will appear showing a list of configuration steps Accept the default selection and click Start You will be asked for the superuser pass word a couple of times The command cf now configures the software according to the hardware of your spectrometer a Configuration of lt spectrometer name gt Change that yes no Most likely you will type no ENTER because the spectrometer hard ware has not changed b Which type of spectrometer Avance AMX ARX Choose the type of your spectrometer e g AVANCE E
163. ol TCP IP Properties will appear Enable Use the following IP address c In the field IP Address enter the IP address of your computer d In the field Subnet Mask enter the subnet mask of your network Windows XP Networking 45 e g 255 255 255 0 or 255 255 0 0 e In the field Default Gateway enter the IP address of the Default Gateway in your network if available f If you have a nameserver In the field Prefered DNS Server enter the IP address of the nameserver e If you have a second nameserver enter his IP address in the field Alter nate DNS server g Click Advanced DNS h Enable the field Append these DNS suffixes in order Add e Inthe window TCP IP Domain Suffix Enter the network domainname Add i Click OK j Ifthe question appears This connection has an empty primary WINS address Do you want to con tinue YES gt OK gt OK CLOSE 5 1 3 Configuring the TCP IP of the Spectrometer Control nN nn bk WH NWN Log in as Administrator Click Start gt Control Panel gt Network Connections A window Network Connections will appear Highlight the connection you want to configure File Properties Highlight the TCP IP entry and click Properties The window Internet Protocol TCP IP Properties will appear e In the field IP Address enter 149 236 99 1 e In the field Subnet Mask enter 255 255 255 0 For the spectro
164. ollows 1 Open a UNIX shell 2 Become superuser type su 3 Edit the file etc printcap and make an entry like laserjet HP rm viola netx applic com rp hp1j4m1 sd usr spool lpd hp1j4m1 1 Depending on your network you must enter hostname or hostname domainname Installing a Printer 71 6 4 6 4 1 ssh where e laserjet is the name for the printer on the UNIX host e viola netx applic com is the hostname domainname of the PC e hplj4ml is the name of the printer on the PC 4 Create the spooling directory which is specified in etc printcap a mkdir p usr spool 1lpd hplj4ml b chown daemon daemon usr spool lpd hp1j4ml c chmod 770 usr spool lpd hp1j4ml More information on network printing under UNIX can be found in the manual netprint which is available on http www bruker biospin de NMR nmr softw passwd docu index html and as Network Printing in the XWIN NMR online help Remote printing from a PC to a UNIX host without Samba Remote printing from a PC running Windows XP on a printer connected to a UNIX host can be realized in two different ways e by installing the Microsoft TCP IP Printing package on the PC e by installing Samba on the UNIX host see chapter 6 5 The first method is easier to install The second method has advantages if you also want to use Samba s capability to share UNIX directories with Windows XP hosts Configuring the PC from which you want to print
165. om your localdomain com Actually you can still use the NMR Guide over the network Only the dynamically generated table of con tents on the left hand side of the browser window will disappear This is because the security patch will prohibit the access to the local proxy server If you want to test whether the fix works do the following Once you have modi fied the httpd conf and restarted the Apache server you open your browser and load http Nocathost This should work Next open http Nocathost guide manualw html This should also work Finally go to another computer in your network open a web browser and enter http the_computername_where_NMR_Guide_is_installed guide manualw htm This should give you the page but an error message should appear on the left hand side along the lines of access is denied 9 1 9 2 Chapter 9 Compiling AU programs XWIN NMR is delivered with the free GNU gcc compiler It is installed automatically during installation of XWIN NMR With XWIN NMR 3 5 it is no longer necessary to have the compiler Microsoft Visual C the default compiler of XWIN NMR lt 3 5 installed So the default situation is that you can skip this chapter because you do not need any special compiler installation or configuration Why does XWIN NMR need a compiler XWIN NMR only needs a compiler for compilation of AU programs If you do not use AU programs you do not need a compiler How can I use Microso
166. omputer Each of them our example here is miscellaneous have a number of batches or executables or plain commands that you can run by just double clicking on the respective icon For example to see the system ID of the current PC you can just double click on the icon called get_hostid highlighted in the screen shot above It will open a text window and deliver the system ID you need to know when you apply for XWIN NMR license encircled C WINNT System32 CMD_exe Imutil exe Copyright lt C gt 1989 1994 obetrotter gt 50 are Inc The FLEX1m host ID of this machine iX 005004idd805 Press any key to continue If you press any key the window will be closed again As you can see from the next screen produced by the command ipconfig all inacommand prompt flexlm takes the address of one of the Ethernet cards in the PC Which one is used depends on the binding order of the two cards You can check the binding by clicking the Network icon from the Control Panel Configuration of XWIN NMR 131 Command Prompt OF x C gt ipconfig all Windows NT IP Configuration Host Name DNS Servers Node Type NetBIOS Scope ID IP Routing Enabled WINS Proxy Enabled NetBIOS Resolution Uses Ethernet adapter E19 x2 Description Physical Address DHCP Enabled IP Address Subnet Mask a Default Gateway Ethernet adapter E19 x1i Description 7 ical Addre Enabled IP Address
167. onfig 3 Enter the Xconfig password if it is requested click OK this is the password that was entered during the installation of Exceed 4 A window Xconfig will appear a Double click the icon Keyboard Input e A window Keyboard Input will appear e Ifnecessary select your keyboard by clicking the arrow at the right of the field Primary e Click OK b Double click the icon Mouse Input Installing Exceed NFS Server 93 e A window Mouse Input will appear e unselect Middle Button Emulation e Click OK c Double click the icon Screen Definition e A window Screen 0 will appear e Click Common Settings e If necessary select click in the field Native Window Manager Focus Policy by clicking the arrow to the right of this field l e Unselect the item Close Warning On Exit e Click Screen 0 e Check the setting of Server Visual for XWIN NMR it must be set to PseudoColor e Click OK NOTE If Exceed 7 x is used under Windows XP with native display instead of an 8 bit mode there are some bugs described in the Bruker BioSpin bug database A possible workaround is to configure the following d Double click the icon Performance e Set Default Backing Store to When Mapped e Set Maximum Backing Store to When Mapped e Click OK 5 Close the windows Xconfig 6 To start Exceed 7 1 1 automatically with XWIN NMR it is necessary to define the path where Exceed is located e Click Start gt Control Panel
168. ons of files Thus an uninstall is more like a build back and you need that to really clean things out By removing the directory you don t solve your problem and also you lose the installation log which is stored as the software is installed This log is very important and used by the uninstaller to make sure it finds every file that went on in the first place Use the uninstaller from Control Panel i e the icon labeled Add Remove Programs Without a log this software will not work any more See chapter 21 2 for a brief description If the NMR SUITE is already installed and you want to install a new version or re install the same version you must first remove the old version and reboot the com puter If you are running NMR SUITE lt 2 5 you have to de install as described in the fol lowing way if you have version gt 2 6 the installation manager of the NMR SUITE 3 5 CD ROM will start the de installation of the necessary programs automati cally after you have made your selection see chapter 11 3 Your own AU programs pulse programs and parameter sets are NOT removed when you de install XWIN NMR If you want to re install any other package like Visual C NFS or Exceed you must first remove that package see below reboot the computer and then re install the package Never delete directories to remove a program l Always use the Add Remove Programs tool e Re install a program in the following way remove
169. ont Color Hi DirFont Color Lo DirBackGrnd Color DirBackGrnd Picture LogLevel bruker xwin nmp_3_ bruker xwin nmr_3_ exp stan nnmr lists bruker xwin nmr_3_ exp stan nmr au sr Nbruker xwin nmr_3_ conf instr bruker nmr s im_3 6 BRUKER NMR CHECK miounrnnnnnnnng bg_graylogo gif ti t found Start GServer on 6600 TCP port Start ObjectServer on 6661 TCP port ObjectServe is listening on 6661 TCP port i stening on 6600 TCP port SatServer is listening on 6603 UDP port 6 Now open the Internet Explorer and type the URL http Nocalhost guide test html and manual html to check whether the test and or the NMR GUIDE are functional NOTE It is convenient to copy the entry StartGuideServer cmd onto your desktop The next time you want to start the gserver just double click on this icon Automatic start of the NUR GUIDE 1 Log in as Administrator 2 Double click the icon BRUKER Utilities on your desktop or click Start All Programs gt Bruker NMR Suite Bruker XWIN NMR x y gt Bruker Utilities A window Bruker Utilities appears Double click Miscellaneous Click right on the entry StartGuideServer cmd or StartGuideServer In the context menu that appears choose create shortcut Anan Bw WwW Click right on the entry Shortcut to StartGuideServer cmd or Shortcut to Start GuideServer In the upcoming context menu choose cut 9 Click Start All Programs Accessor
170. ose a CD R CD RW or DVD R device because ntbackup exe does not support backing up to these devices The Removable Storage Management RSM does not have the ability to recognize these three devices as backup pool media RSM regards CD R CD RW or DVD R as just a file system capable media type but the Windows file system does not support formatting these media types When it attempts to write an RSM free label RSM does not succeed because the disc appears to be write protected This means that RSM treats CD R CD RW or DVD R media as a read only media type even if you add them to the ntbackup media pool Before you buy a tape drive make sure it is compatible with your PC s interface s IDE and or SCSI Bruker BioSpin recommends to make a regular backup of the partition s on which Windows XP and the XWIN NMR are installed 15 10 1 Complete Backup of the PC 1 Click Start All Programs Accessories System Tools gt Backup a window backup will appear 2 Click Welcome Backup Wizard a window Backup Wizard will appear Next Troubleshooting 169 3 4 5 Enable Backup everything on my computer gt Next Choose the media drive you want to store the backup Next Click Finish to start the backup 15 10 2 Backup of specific directories 15 10 3 1 NN wm Bb Click Start All Programs Accessories gt System Tools gt Backup a window backup will appear Click Backup
171. ost with the command copy plot_file_name LPT1 e UNIX host with the command cp plot_file_name dev plp You can create plot files in XWIN NMR as follows 1 Install the printer for which you want to create plot files as described in chapter 6 1 but select File as the port or 2 Modify the port of an existing printer to File 190 Plotting and Printing under Windows XP a Start gt Settings printers b Double click on the printer for which you want to create plot files c Click Printer Properties d Click Ports select File st HP LaserJet 1100 Properties 21x General Ports Scheduling Sharing Security Grundlagen HP Lasenet 1100 Print to the following port s Documents will print to the first free ed port check z _ Description O LPT3 Local Port O comt Local Port O com2 Local Port L COM3 Local Port COMA Local Port FILE Local Port HP Lasewet 1100 Add Pott Delete Port Configure Port Je Ernane bidirectional support I Enable printer pooling Cancel Hep 3 In XWIN NMR e Enter edo and select the printer which you installed in step 1 e Enter plot The name of a plot file consists of the creation date and time and the printer name e g 980311121829 HP_LaserJet_4L Plot files are stored in the directory lt KWINNMRHOME gt plotfiles For a typical installation on the partition C this is C Bruker Xwin nmr plotfiles You can s
172. ote Desktop Help Assi Built in account for administering tH Built in account for guest access to Account for Providing Remote Assis This is a vendor s account For the H User Management User Management 143 e Click Local Users and Groups 3 Right mouse click User Select New User 4 A window New User will appear e Enter the users Full Name and Description optional and the users pass word in the fields Password and Confirm Password Create Close 14 1 3 Adding normal users to the group NmrUser in a standalone PC Each user who wants to run XWIN NMR must be a member of the group NmrUser This group is automatically created during the XWIN NMR installation To add a user log in as Administrator otherwise you will be asked for the administrator password during the process and proceed as follows 1 Go to the icon My Computer on the desktop gt right mouse click Manage or Open the Microsoft Explorer Go to My Computer right mouse click Manage 2 A window Computer Management will appear e Click Local Users and Groups 3 Click Groups 4 Highlight the group NmrUser e right mouse click Properties 5 A window NmrUser Properties will appear e Click Add 6 A window Select Users will appear e Click Advanced Click Find Now e highlight every name you want to be a member of NmrUsers e Click OK gt OK 7 Close the window NmrUser Properties by clicking OK or
173. ou share folders only on the network within your user pro file that remote users on other computers need to access Never ever share the root of your system drive In this case your computer is more vulnerable to malicious remote users To turn Simple File Sharing on or off 1 Double click My Computer on the desktop 2 Click on Tools select Folder Options 3 Click the View tab and then click to select the Use Simple File Sharing recommended check box to enable Simple File Sharing click to clear this check box to disable this feature 50 Windows XP Networking Levels of Access There are five levels of access 1 Level 2 My Documents Default an Aa WwW N Level 1 My Documents Private Level 3 Files in shared documents available to local users Level 4 Shared Files on the Network Readable by Everyone Level 5 Shared Files on the Network Readable and Writable by Everyone In Levels 1 2 and 3 folders are available only to a user who is logging on locally Levels 4 and 5 folders are available to users who log on locally and remote users from the network You can have the following permissions Access Everyone Owner System Administrators Everyone Level NTFS File Share Level 1 no Full Full no no Control Control Level 2 no Full Full Full no Control Control Control Level 3 Read Full Full Full no Control Control Control Level 4 Read Full Full Full Read Control Control Control Level 5 Cha
174. oups as described in chapter 5 6 3 Installing global user groups The NMR SUITE installation program creates a local group NmrUser Each user who wants to use the NMR SUITE must be a member of this group Domain users could be added individually to the local group NmrUser but in a network with many Workstations and varying users this would be an elaborate task Therefore we recommend to create so called global user groups Global groups are created by the Domain Administrator on the Domain Controller Each global group contains users who are allowed to do certain tasks e g start XWIN NMR on a specific spec trometer or datastation These global groups are then added to the local group NmrUser on the various Workstations in the network In our example the Domain Administrator creates the global groups SpecUsers and ProcUsers which are then added to the local group NmrUser on WTSPEC and WTPROC respectively After that for example the global user spec_usera can control the spectrometer from Workstation WTSPEC By managing these global groups on the Domain Control ler the Domain Administrator can control which users can use the spectrometer and which can use the datastation In practice one global group will be added to the local group NmrUser on several Workstations and NmrUser on one Worksta tion can contain several global groups Windows XP Networking 63 Gro N Admi N ups RUser NTSPECT in XP Prof
175. ox to clear the option to Protect my com puter or network Chapter 21 Appendix 21 1 Windows XP Important Information about your PC 1 What is the Bruker BioSpin order number HH 2 Customer details Name Organization Adr1 Adr2 Adr3 3 Manufacturer and Type of the PC 4 Manufacturer s system ID number of the PC 5 Which service pack of Windows XP is installed SP 215 216 Appendix Shown at boot time on blue screen 6 What type of graphics controller is installed 7 Name of NMR SUPERUSER 21 2 How do I remove a program One of the fundamental differences between UNIX and Windows XP is that appli cation programs are much more closely interwoven with the Windows system files Under UNIX you have a fair chance uninstalling software by just removing the one directory that contained the executable s Never never never delete directories under Windows to uninstall software Many files that are uploaded during an installation go into other parts of the system or replace existing versions of files Under Windows XP an uninstall is more like a build back and you need that to really clean things out As a preparation to make a build back feasible all installation procedures leave behind log files that tell the un installer which files make up the product and where they have been placed Furthermore the uninstall procedure places a record into Windows inventory of applications that you can simply
176. program without password This requires the acquisition server to be ready checking connection to spectrometer lt may last a minute gt no spectrometer service license available Hit ENTER to continue 11 10 Completing the NUR GUIDE installation There are two ways to start the NMR GUIDE server gserver manual and auto matic If you often want to use the NMR GUIDE remotely you should start it automatically so you can use its databases whenever someone is logged on the PC If you do not want to allow every user in your network to use the NMR GUIDE whenever someone is logged on the PC you should start it manual whenever you want to use the NMR GUIDE Note A PDF viewer is required for displaying documents see chapter 11 5 11 10 1 Manual starting of the NUR GUIDE server 1 Double click the icon BRUKER Utilities on your desktop or click Start All Programs gt Bruker NMR Suite Bruker XWIN NMR x y Bruker Utilities A window Bruker Utilities appears Ww N Double click Miscellaneous 4 Double click the entry StartGuideServer cmd or StartGuideServer 110 Installing the NMR Suite o gt 11 10 2 5 A command prompt StartGuideServer cmd will pop up StartGuideServer cmd File separator Init gserver Server port ObjServer port XWIN NMR home Pulse program directory path au program directory path Instr file source path NMR SIM home NMR CHECK home DirF
177. puter that is running Windows XP Or create a boot ini file and then modify it to match the computer that you are trying to access The following example works for a single partition IDE drive with Windows XP installed in the Windows folder but the exact value in the operating systems section depends on the configuration of the Windows XP computer that you are trying to access boot loader timeout 30 Default multi 0 disk 0 rdisk 0 partition 1 windows operating systems multi 0 disk 0 rdisk 0 partition 1 windows Windows XP If your computer boots from a SCSI hard drive you may need to replace the 168 Troubleshooting multi O entry with scsi 0 If you are using scsi x in the boot ini file copy the correct device driver for the SCSI controller in use on the computer to the root of the Setup disk and then rename it ntbootdd sys Change the disk 0 number to represent the SCSI ID of the hard drive you want to boot to If you are using multi x in the boot ini file you do not need to do this 4 Start your computer by using the floppy disk and then log on to Windows XP 15 10 Backup of Windows XP and the NMR SUITE The standard backup programs under Windows XP is called ntbackup which can be started by clicking Start All Programs Accessories gt System Tools Backup Under Windows XP ntbackup is possible to use ZIP tape and external hard disks as backup media You cannot cho
178. py the images to 5 Enter the letter for the floppy disk drive typically A 6 After you typed in the floppy disk drive letter you see the following message Insert one of these disks into drive letter This disk will become the Windows XP Setup Boot Disk Press any key when you are ready The file starts extracting and copying the files Continue inserting the blank disks as you are prompted to do so until all six disks are created If the process is interrupted you must run the downloaded program file again to create all six disks Label each disk appropriately with the number that is specified by the pro gram 15 16 3 Using the Setup Disks You have created all six disks 1 Insert the first disk in the floppy disk drive restart the computer Note The PC must be configured to boot from the floppy disk drive 2 The setup process starts 3 Insert the other floppy disks as you are prompted to do so Note You will need to use the Windows XP CD ROM to finish Setup 16 1 16 1 1 Chapter 16 File and directory handling Viewing and opening files directories Windows XP offers three different ways of finding files or directories folders If you want to find a specific file and you have no idea where it resides you can use the Search program If you want to get an overview over the directory tree s you can use Windows Explorer or My Computer Windows Explorer The Explorer provides an overview
179. r Click Start All Programs Internet Explorer A window Microsoft Internet Explorer will appear Click Help About Internet Explorer A window About Internet Explorer will appear AnA bk e NY Is the Version entry 6 0 or more e Yes 79 80 Installing Internet Explorer A correct version of the Internet Explorer is already installed you can go to the configuration in chapter 7 4 No There is not a correct version of Internet Explorer installed please follow the instructions in chapter 8 7 3 Update of Internet Explorer 1 Click Start All Programs Internet Explorer 2 A window Microsoft Internet Explorer will appear 3 Type in the address http www microsoft com windows ie default asp Click on download and follow the instructions 7 4 Configuration of Internet Explorer A U N Click Start gt All Programs Internet Explorer A window Microsoft Internet Explorer will appear Click on Tools Internet Options gt Advanced Ensure that the following Settings are enabled e Java console enabled requires restart e Java logging enabled e JIT compiler for virtual machine enabled requires restart Restart your computer Chapter 8 Installing the Web Server for using NMR GUIDE 8 1 When do I need a Web Server If you want to use the NMR GUIDE which is part of the NMR SUITE it is necessary to install a web server first 8 2 Which Web Server i
180. r Good Laboratory Practice tests requires separate license FLEXLM License manager required for starting NMR SUITE programs GNU TOOLS System tools required by XWIN NMR automatically installed as part of the XWIN NMR package 100 Installing the NMR Suite 15 PERL language interpreter required for certain XWIN NMR commands automatically installed as part of the XWIN NMR package 11 3 Installing the NMR Suite o This chapter describes the installation of the NMR SUITE as local Administrator using a local NMR SuperUser account Chapter 5 6 describes additional steps which must be taken if you want to install the NMR SUITE in a Domain The instal lation program stores several log files in the directory TEMP on the partition where Windows XP is installed e g C TEMP If NMR SUITE 2 5 is already installed and you want to re install certain packages first remove these packages according to chapter 2 3 and reboot the computer If you want to upgrade from NMR SUITE 2 6 to NMR SUITE 3 x you can immediately start to install the Installation Manager will automatically de install the necessary programs You could confirm the usual questions and have to log in after the reboot the installation will then continue with the software products you have already selected 1 Log in as Administrator 2 Close ALL WINDOWS on the desktop 3 If any X Server other than Exceed is running stop it in the following way a
181. r drop down list F4 Force refresh of windows contents F5 Switch between left and right pane F6 Go up one level in folder hierarchy BACKSPACE open context menu SFHIFT F10 right mouse click 18 4 Windows XP Command Prompt versus UNIX shell 18 4 1 Bruker BioSpin supports the NMR SUITE for both UNIX and Windows XP Here are some of the differences between these two operating systems which are of interest Directory specification In a UNIX shell pathnames are specified using the slash character whereas under Windows XP the backslash character is used Example UNIX shell ed Bruker XWIN NMR Windows XP Command Prompt cd Bruker XwIn NMR Under UNIX command options are usually specified with a minus character whereas in an Windows XP Command Prompt the slash character is used For example the command for listing files sorted by date UNIX shell ls lrt Windows XP Command Prompt dir od 198 Windows XP commands 18 4 2 Windows XP commands versus UNIX commands Under Windows XP most commands can be executed via the Graphical Interface You can however also open a Windows XP Command Prompt and run commands from there Here is a list of UNIX shell commands and the corresponding Win dows XP shell commands Function UNIX shell Windows XP Command Prompt Files List files ls dir copy a file cp copy rename a file mv ren delete a file rm del erase print a file lp print edit a fi
182. r computer e Click Next A window License Agreement will appear e Click I accept e Click Next A window Customer Information will appear Insert the appropriate information or leave the proposals unchanged it is important that this application will be installed for anyone who uses this computer e Click Next A window Destination Folder will appear e Click Next A window Setup Type will appear e Click Typical e Click Next A window Ready to Install the Program will appear 96 Installing Exceed NFS Server e Click Install e A window Installing Hummingbird NFS Maestro Server will appear showing a progress bar e A window Hummingbird Setup Wizard Completed will appear e Click Finish e Back in the window Hummingbird Master Setup e Click Back e Click Exit 7 Remove the CDROM Two certificates Proof of license are delivered with each CD NT Toolkit for NMR SUITE They prove that you have an official copy of the Hummingbird Exceed and NFS Server Please keep these two certificates 10 5 Configuring the NFS Server for spectrometer control Before you can configure the NFS Server described in chapter 11 6 you must first install the NMR SUITE CDROM particularly the DISKLESS package see chapter 11 3 Chapter 11 Installing the NMR Suite 11 1 Preparing for the NMR Suite installation Before you install the NMR SUITE 1 Before you proceed make sure
183. r switched off and should be turned on again at the end of this procedure 9 A window Select Installation Type will appear e Click Typical to install all packages in their standard directories 2 10 If DISKLESS was selected in step 7 and if this package is already installed any version it is automatically deleted and a window Reboot will appear a Click OK to reboot the computer b Login as Administrator c Eject and insert the CDROM to continue the installation 1 Note that during a first time installation of the NMR SUITE the CCU can not be booted 2 Custom installation is not described in this manual It allows the user to determine in which directory each package will be installed this is normally only necessary for installations of two different XWIN NMR versions Installing the NMR Suite 103 11 A window Set NMR Super User will appear l a Do one of the following e Accept the default NMR SuperUser Administrator or e Enter a special user for this purpose e g named nmrsu or e Enter any other user If you choose an NMR SuperUser other than Administrator and this user does not exist yet e Press the keys CTRL ESC to open the Start menu e Install a user as described in chapter 5 6 1 b Click Next The installation of NMR SUITE will start now 12 It is strictly recommended to accept the default path for the flexLM installation C f lex1m If you choose an user defined path you have t
184. rator account that has a password that you remember Note You cannot log on as usual by using the Administrator or Computer Ad ministrator account to a Windows XP Professional based computer in a work group To log on as the Administrator or Computer Administrator you must start Windows XP in Safe Mode 2 Click Start Click Run 3 In the Open box type the following command and then click OK control userpasswords2 4 Click the user account that you forgot the password for Click Reset Pass word 5 Type a new password in both the New password and the confirm new password boxes Click OK You should now be able to log on to Windows with the user account and the new password WARNING If you reset the password for a user account in this manner in Win dows XP Professional the following types of information for that user will be no longer available Windows XP Tips and Tricks 213 20 5 2 20 6 e E mail messages that are encrypted with the user s public key e Internet passwords that are saved on or remembered by the computer e Any files that the user has encrypted Method 2 Use a Password Reset Disk If you created a password reset disk for Windows XP you are able to password by using the password reset disk For additional information reset your about how to use a password reset disk please check the articles in the Microsoft Knowledge Base e In order to create and use a Password Reset Di
185. rectly connected to the Internet This feature is available for local area network LAN or dial up connections It also prevents scanning of ports and resources file and printer shares from external sources Enable Internet Connection Firewall a Use the Network Setup Wizard to enable the Internet Connection Firewall 1 Run the Network Setup Wizard Click Start Control Panel double click Network Connections and then click Setup or change your home or small office network 2 The Firewall is enabled when you choose a configuration in the wizard that indicates that your computer is connected directly to the Internet b Configure the Internet Connection Firewall manually for a connection 1 Click Start gt Control Panel double click Network Connections 2 Right click the connection on which you would like to enable the firewall Click Properties 3 On the Advanced tab click the box to select the option to Protect my com puter or network 4 If you want to enable the use of some applications and services through the firewall you need to enable them by clicking the Settings button Then select the programs protocols and services to be enabled for the firewall configuration Disable Internet Connection Firewall 1 Click Start Control Panel double click Network Connections 2 Right click the connection on which you would like to disable the firewall Click Properties 3 On the Advanced tab click the b
186. reeeeresrsresrssrerssrenrsrenrerrsreereee 108 11 9 Check if the XWIN NMR installation is correct c ececcecessecesseceeeeeceseeceessteeeneaes 108 11 10 Completing the NMR GUIDE installation 00 ee eee eeee cesses ceesaeeeenaees 109 11 10 1 Manual starting of the NMR GUIDE server ceescesessessesceeceecseeeeseesesaceceseeeceecnecaeceeeessesaesaeaeeeseneaeens 109 11 10 2 Automatic start of the NMR GUIDE nhia aee es EE rE ES TEAREN Ee ENa E E EAE aY 110 11 10 3 Start the NMR GUIDE on your Spectrometer s sseeeeessieteerstestesteettrertestetrtisrerertssreetiereeestnsrererereet 111 11 104 Start the NMR GUIDE remotely sinsercon i Aeae EEEE EEVEE ER NEE ERRE ooe 111 Chapter 12 The NMR Suite license essesessooesoesssoessseesosessoosssccecsecesoosesoosssooesseeesosessosssseeseseee L13 12 1 Questions and answers about the NMR Suite license cceceeesseceeteeeeeeeeeeee 113 12 2 Ordering and installing the NMR Suite license s sssssseeseeeeeeeeeerereeresesresrsseresseees 117 122 1 Ordering a licens ea w ae e a e aa E E EE 117 T2 2 2 How do T determine the correct hostia reisisid eardere aaee AE E ANa 117 12 2 3 Installing a Demo license 118 12 2 4 Installing a full license on a license server 119 12 2 5 Installing a full license on a license client 120 122 6 Modify ing the license IN 6 iascctecseedecszeceveze seceacese atest ctassdonediaitti aegetavencdidsscts Sigel tee er ho ane eae ee 122 7 Further informati n o
187. rfect for NMR CHECK s and XWIN NMR s e mail features The descripton how to use the send button in XWIN NMR is found in the XWIN NMR processing manual Installation and configuration of Outlook Express Outlook Express gets automatically installed with Microsoft Internet Explorer 6 0 or newer e Open Start gt All Programs Outlook Express e or double click the Outlook Express icon on the desktop Supply all parameters asked for by the setup wizard Contact your network admin istrator if you are not sure what to fill in Select Options from Outlook Express Tools menu and configure the General Set Windows XP Networking 57 tings as shown below i Signatures pr Security Connection i Maintenance General Read Receipts Send Compose General Si When starting go directly to my Inbox folder C Notify me if there are any new newsgroups F Automatically display folders with unread messages J Automatically log on to Windows Messenger Send Receive Messages fal Play sound when new messages arrive V Send and receive messages at startup 7 Check for new messages every 30 A minute s If my computer is not connected at this time Ic t only when not working offli Connect only when not working offine v select Default Messaging Programs This application is the default Mail handler This application is the default News handler Make Default Apply Outloo
188. roperties menu will reappear Click Close Cannot connect to license server WinSock Error code The file License dat was found but Flexlm does not run Maybe a Flexlm is not installed Install Flexlm from the NMR SUITE CDROM b the Service Bruker Flexlm license server is not running Click Start Control Panel Administrative Tools e Double click Services e A window Services will appear Troubleshooting 153 e Select Flexlm click Start e Server node is down or not responding 96 379 The server could not answer because he is down the entry lt SERVER NAME gt in license dat is wrong or the server has been wrong configured Check if the server in the license dat file is down a wa b c wm Click Start All Programs Accessories Command Prompt type ping lt SERVER NAME gt and check if the correct reply occurs A reply like this Reply from lt SERVER_IP_ADRESS gt bytes 32 time lt 10ms TTL 128 shows that the server is okay A reply like this Request timed out shows that the server is down A reply like this Bad IP address lt SERVER NAME gt shows that the lt SERVER NAME gt is wrong or the server is not correctly configured Check if the entry of the server in the license dat file is wrong wrong name blanks if so correct it Check if the server has a wrong configuration e g TCP IP pro
189. rt the script once again or you have to use the replace option Chapter 14 User Management 14 1 User Management in a standalone PC 14 1 1 After the installation of Windows XP there is one user with administrator rights namely the user Administrator If the password for this user gets lost there is no way of resetting it other than re installing Windows XP Therefore we strongly recommend you install at least one more user with administrator rights e g with the name root actually this name is also much easier to type on the keyboard You can install a new user or administrator as follows Adding a new user in a standalone PC method 1 The following chapter describes how to add a new user with Administrators rights 1 2 3 Log in as Administrator Click Start gt Control Panel User Accounts A window UserAccounts will appear e Click Create a new account A window UserAccounts will appear Enter the name of the new account e g root Next A window Pick an account will appear 141 142 14 1 2 Now you have created a new account But this account is not protected by a pass word by default Therefore you have to set a password for this account Click Computer administrator Create account 1 Click Start Control Panel User Accounts 2 A window UserAccounts will appear Now you have for example two users with local Administr
190. ruker biospin de NMR nmrsoftw passwd docu index html How do I determine the correct hostid The hostid is a 12 digit hexadecimal number It is the physical address also called Mac address or Node address of the Ethernet card After installing XWIN NMR including the Flexlm license manager you can determine the hostid in two ways e Start XWIN NMR a command prompt will pop up which will list the hostid if a correct licence is not yet installed 118 The NMR Suite license Click the Bruker Utilities icon on the desktop then click Miscellaneous gt get_hostid Open a Command Prompt and type in c flexlm bruker lmutil Ilmhostid Under Windows XP it is possible to get more than one hostid Just select one of them to order the license Some hostid values may indicate problems a b If hostid 2 occurs You may run Windows XP and your network adapters are disabled Click Start gt Control Panel Network Connections Right click all Local Area Connection xxx items and there click Enable if it is visible If hostid or ffffffff occurs You may run Windows XP and your net work adapter has no link to the network Establish an link to the network or install the NWlink IPX SPX NetBIOS Compatible Transport Proto col Click Start Control Panel Network Connections Right click Local Area Connection xxx Click Properties Install gt Protocol Add The Select
191. s enter the name of any user on nthost_a b In the field Password enter the password for this user A list of shared partitions directories will appear 1 This is the name under which the directory can be accessed from other hosts Windows XP Networking 49 5 4 2 o gt The network password is only requested for the first connection Now you can e Access the remote directory as if it were local e Copy the remote directory or any sub directory or file in it by dragging the corresponding icon into any target directory window assuming you have the write permission in the target directory Note that the latter is only useful if the remote directory is not permanently shared Enabling and disabling Simple File Sharing A PC under Windows XP Professional that is joined to a workgroup has the Sim ple File Sharing enabled by default The Simple File Sharing is located in the folder s properties When you set the Simple File Sharing the share and the file per missions are configured A Windows XP Professional PC that is joined to a domain use only the classic file sharing and security interface If you disable Simple File Sharing the Shared Documents feature is not turned off You have more control over the permissions to individual users if you disable the Simple File Sharing However you must have advanced knowledge of NTFS and share permissions to keep your folders and files secure It is recommended that y
192. s Change will appear click Yes to reboot The procedure for other PC s or other Graphics drivers might be a little different 34 Installing and configuring Windows XP Professional 3 4 Setting the Display Colors and Resolution The NMR SUITE requires a graphical resolution of 1024 768 or 1280 1024 with 256 colors These values can be set in the following way 1 Log in as Administrator 2 If a window Invalid Display Setting appears click OK 3 Click Start gt Control Panel 4 A window Control Panel will appear e Double click the icon Display Display Properties x Background Screen Saver Appearance Web Effects Settings Display Plug and Play Monitor on ATI Technologies Inc 3D RAGE PRO AGP 2x i Less More 1024 by 768 pixels Troubleshoot Advanced 5 A window Display Properties which looks similar to the picture above will appear a Click Settings b Click in the field Colors If the value 256 Colors is available e Select 256 colors e Continue with step c If the value 256 Colors is not available Installing and configuring Windows XP Professional 35 e Click Cancel e You must first install the Graphics driver for your Graphics card as de scribed in chapter 3 3 and then set the display colors and resolution starting with step 1 c Click in the field SCREEN AREA and select a resolution of 1024 768 or 1280 1024 according t
193. s necessary Bruker recommends the Apache web server which is available either on the NMR SUITE CD or on the web http httpd apache org because the IIS Internet Infor mation Service part of the Microsoft Windows CD is often attacked by hackers and viruses and so could be a security problem If you currently use the IIS only for running NMR GUIDE then you can switch to the Apache web server Before doing so contact your system administrator to be sure that no other applications which require the IIS are running If you are in doubt about this you can use both web servers at the same time see chapter 8 4 4 81 82 Installing the Web Server for using NMR GUIDE 8 3 Installation of Apache web server 8 3 1 How to install Apache web server If it is already installed the previous configuration will not changed the configu ration information for NMR GUIDE will just be added You can download the Apache Web Server from the web http httpd apache org Or you can install it from the NMR SUITE CD On the CD go to the directory windows apache and execute the file apache_1 3 27 win32 x86 no_src msi 8 4 Configuration of Apache web server 8 4 1 Situation 1 no WWW server running 1 Before you install NMR GUIDE you have install the Apache Web Server You can follow the default installation Only three parameters are required during the installation e Name of the computer e g donna e The domain name of the computer
194. s on that UNIX host appears If this list does not appear within one minute click the My Network Place icon on the desktop and try to connect to the remote UNIX host Then go back to the window Connect to printer click the remote UNIX host again and see if get a list of shared printers now e Double click the printer connected to the UNIX host e g laserjet 4 A message about a missing NULL printer driver will appear Click OK 5 A window Add Printer Wizard will appear Installing a Printer 75 a In the field Manufacturers select the manufacturer of the printer e g HP b In the field Printers select the type of the printer If your printer does not appear in the list select a related printer type or click Cancel and get the driver from CDROM or from the Web c Click Next d If other printers are already installed you will be asked if the new printer must be the default printer e If you want to use this printer as default printer click Yes e If you do not want to use this printer as default printer click No e Click Next click Finish 6 6 Installing a printer with a JetDirect print server If your printer is connected to the network via a HP JetDirect print server you must install it in the following way 1 2 Install the Service Microsoft TCP IP Printing as described in chapter 6 3 1 3 4 A window Printers will appear Log in as Administrator Click Start Printers and Faxes
195. s yes yes yes yes yes folder permission file permissions 182 File and directory handling 16 2 2 16 2 3 Changing file permissions The permissions of a single file can be changed as follows 1 Find the file in the Explorer see chapter 16 1 1 Right click the file icon 2 3 Click Properties 4 A window Properties will appear e Click Security Highlight the user group for whom that you want to change the permissions Click Allow or Deny to set the permissions If you want to add a new user group click on Add rant n wm A window Select Users Computers or Groups will appear a Select the one you are looking for Add gt OK 9 Select the permissions you want to give to the new name If you want to select special permissions do step 1 5 then click Advanced 1 A window Access Control Settings for lt filename gt will appear e Click Permissions gt View Edit 2 A window Permission Entry for lt filename gt will appear e Click Allow or Deny of the permissions you want OK gt OK OK Changing directory permissions The permissions of a directory can be changed in the same way as file permissions In the window Permissions Entry for lt directoryname gt you can select in the Field Apply onto the effects of changing the permissions Click the small arrow right of the field Apply onto and select the entry of your choice You can select any combination between
196. saeesseceeae 191 TL 1G AXWIN PLOT Sis e E EE A SNS NTS ten eter MU ie tee Ba Daa ten HES Eee 192 Chapter 18 Windows XP commands essessoesoesoossoesoesooesoesoosoossossoossossoosoossessesssessessessssssessee 193 1821 Online TCI pikes ohare A a tae Sy a a ane R 18 1 1 Getting Help om specific topics sicciccssssdessaccnsescissstescessnsessua cca tadsdeaovensesssssdueebetosavssscvessasesesadoastonacsensonsns 18 1 2 The question mark in the upper right corner 0 0 eceeeceeceecseeseeeeseeseeseeceseeeceecnecaeceeseeseeaesaeaeeeeeneneens 18 13 Tips om W indOWs X Paraan paea Harar INARIA E ea PISTO AEE NPE Ea EEI L EEANN NoE IONA aaa 18 1 4 Windows XP tips and tricks on the Web 0 cecceesseseeseeeseeecsecaeteeeeesesacsaeacesesecuecnecaeceeeeeseeaesaeaeeateeeneens 18 2 Command Prompt versus Graphical Interface oo eee eeseeeecneeeeceeeeteeeeeees 18 3 Keyboard shortcuts 0 cic eceeeseessessecsecsseesecescesecesceseeeeeseeeeeeseseaecaesenecaaesaesseenaees 183 1 General SHOTCUtS 3s aessecessi es vcd isan s KS SERE cans Eeoa REE ENSEN TEASEE Eaa OPa o ESEE NEEESE EA EESE E N 18 3 2 Shortcuts for Windows Explorer 18 4 Windows XP Command Prompt versus UNIX shell 18 4 1 Directory specifications isis sc ssci3 dscccedantesseuiasaascacdatescvtes spss E E doa cts sth sedededosagseasaesbesegeaseastebaedeateasess 18 4 2 Windows XP commands versus UNIX commands uu ccs cece eeseseesessessessecnecaeceseeesessesseseeeseeneegs 18 5 The UNIX GN
197. sceeceececseceeeeeseesesaeseeeseeceecneceeeeseeseeaeeeaeeee Configuring the UNIX host to which the printer is physically connected Remote printing from a PC to a UNIX host with Samba 0 eee eeeeeeeees Configuring the UNIX host to which the printer is physically connected Configuring the PC from which you want to print ccecseeeeeeecneeeeeeeeeees Installing a printer with a JetDirect print server Partl NMR Suite Installation and Configuration Chapter 7 7 1 7 2 7 3 7 4 Chapter 8 8 1 8 2 8 3 8 3 1 8 4 8 4 1 8 4 2 8 4 3 8 4 4 8 4 5 Chapter 9 9 1 9 2 9 3 Chapter 10 10 1 10 2 10 3 10 3 1 10 3 2 Installing Internet Explorer e sessesrsessessecsoesoescoesoesoesooesoesosscossoesooesossessosssossesssese 79 When do I need Internet Explorer sssesesseeseseeeresresrsrrererrsrrerssrersseerrrresrsrrsreersseet 79 Is the Internet Explorer 6 0 or newer already installed 0 0 0 ee eee eeeeeeeees 79 Update of Internet Explorer eee cseessececnseeseceseeseceseeseeeeeeseseaeeaeeeaeeneeeaes 80 Configuration of Internet Explorer cece ee eceseeecseeeeeceesaecsecesececeseeeeneserenes 80 Installing the Web Server for using NUR GUIDE seessseesoossseoessecesossesosseseceee 81 When do I need a Web Server oo ceseceeceseesecesceesceeeeeeseaeeseeeaeesaecaessseeneesaees 81 Which Web Server is necessary ooo cee eeesseceeceseeescesnecseaeceeceseeeeeseeeeseseseaeeaeeeaes Installation of Apache web server
198. se without cortab 64k memory part number H2556 256k memory part number H2554 requires at least EC level 05 ithout f BETO HOR Does wiiout ysn 64k memory part number H2556 cortab 256k memory part number H2554 requires at least EC level 07 FCUO for use with cortab 4k n H2 with EC level between 00 and 19 i OPAT a Er R Fae 256k memory part number H2554 requires at least EC level 22 FCUO for use with cortab P 4k N H2 with EC level higher than 20 e Hor Pane ee eee 256k memory part number H2554 16 Introduction Tomo FCU part number T5565 64k memory for use without cortab requires at least EC level 00 part number T5565 64k memory for use with cortab requires at least EC level 02 part number T6765 256k memory for use with or without cortab with EC level between 00 and 19 requires at least EC level 00 part number T6765 256k memory for use with or without cortab with EC level between 20 and 29 requires at least EC level 21 1 3 2 2 Avance systems with AQS rack CCU 10 e WINDOWS every EC level will work FCU 3 part number H5822 64k memory requires no specific EC level recommended at least EC level 04 part number H9598 256k memory requires no specific EC level recommended at least EC level 02 RCU Note RCUs with EC level 06 of the A
199. sical Address 66 56 64 65 72 16 DHCP Enabled IP Address z 149 236 99 1 Subnet Mask 255 255 255 0 Default Gateway J Ethernet adapter E196x1 Description 3Com 3C96x Ethernet Adapter Physical Address 66 56 64 1D D8 65 DHCP Enabled d IP Address Node IpAddress 16 1 222 1 Scope Id NetBIOS Local Name Table The easiest way to copy it on a diskette is right from within the miscellaneous folder Right click on the confout icon and select send to and then A Configuration of XWIN NMR 137 Miscellaneous File Edit View Help printcont pwrdwn shmim showconf xwinnm save xwinversion Open Print Quick View gt em 3 Floppy A _ BA Mail Recipient Create Shortcut My Briefcase The size of this report is mostly less then 100 kbytes DO KEEP A COPY OF THIS FILE IN A SAFE PLACE 13 6 Backup of VIF s Very Important Files It is not only necessary to create some backups for the operating system like ERD and Boot Disks and to store the acquired datasets o it is strictly recommended to create a frequently backup of the VIF s the Very Important Files of the configuration of XWIN NMR There are many reasons like e g head crash or larceny of the hard disk that are requires to store weekly or monthly the important data in a way that you are able to restore the habitual spectrometer configuration in an appreciable short time XWIN NMR 3 1 and higher offers
200. sk for a computer that is not a domain member in Windows XP please read http support microsoft com default aspx scid kb US 305478 EN e In order to create and use a Password Reset Disk for a computer in a domain in Windows XP please read http support microsoft com default aspx scid kb US 306214 EN Error Message When You Use the Add Printer Wizard When you create a printer either a local printer or a remote network printer by using the Add Printer Wizard you may receive the following error message Operation could not be completed The print spooler service is not running This error occurs because the Spooler service has not been started or has stopped working To start the Spooler service follow these steps 1 Click Start Click Control Panel 2 Double click Administrative Tools Click Services 3 Double click the Printer Spooler service gt Change the startup type to Automatic This sets the Spooler service to start automatically restart the computer when you 4 If you want to start the spooler service immediately click the Start button under the Service Status field 214 Windows XP Tips and Tricks 20 7 20 7 1 20 7 2 Internet Connection Firewall in Windows XP Windows XP provides internet security in the form of a firewall Internet Connec tion Firewall This feature is designed for home and small business use and pro vides protection for computers di
201. sssststittstsssisitetnrrsresrerenteeseesre 179 16 14 Searchin neisiet esee Use eE a S E EEEE AE ERE EEE A ER E E 180 16 1 5 The Windows Command Prompt ss sessissssspasccssostsssbassacdesssieaes aussssbyssisivesasssdivussatsssassaatvssssyastaagsss shseabaas 180 16 2 File and directory permissions 00 0 0 cess eeeeeeeeeceeeseecaecsacesecsseessenseeeeeeeees 180 16 2 1 Permissions and Typ s of ACCESS seris isre iite risser isei siino erat S EAER EEE EEE C EE TERT 181 16 2 2 Changing file permissions 182 16 2 3 Changing directory permissions 16 2 4 Read only attribute 16 3 Known Problems in XWIN NMR for Windows XP u ccecccesseecssseceesseeceeeeeeeseeeeee 183 16 4 Compressing files and directories 16 4 1 Setting the Compress attribute neiii iE E RAEE Ae ERA EA iS 16 5 Editing text fles oah eriari eE rE E E EErEE E SERTER Chapter 17 Plotting and Printing under Windows XP 17 1 Differences between UNIX and Windows XP 17 1 1 Exchange of XWIN NMR data between Windows XP and UNIX 00 cceccceceeesseeceeeeseecseeeseeeese teens 187 17 1 2 Plotting and printing egrisi rin ineeie ea EE Ci aT E EREE R EREE A A E INTRE 187 17 1 3 Plotting from XWIN NMR into Plot Files ccc eE E ERE R 189 17 1 4 Plotting from XWIN NMR into Enhanced Metafiles cies ceeceeseececeesesseeceesesseecaesesaeesseteeaes 191 17 1 5 Importing XWIN NMR data into Microsoft programs ccece cscs ses cee ceesesseeceeseseeeceeseseeecaese
202. st the Apache server open Internet Explorer and type in the URL http Nocathost 8080 84 Installing the Web Server for using NMR GUIDE 8 To test the NMRGuide open Internet Explorer and type in the URL http Nocathost 8080 guide test html 8 4 5 Secure Apache web service configuration The standard configuration of the Apache web server has a security hole which is caused by the httpd conf file Due to the security hole the computer can be mis used for sending out massive numbers of mails The security hole can be easily fixed Please add the following lines to the httpd conf file from the NMR GUIDE distribution The httpd conf is located lt XWINNMRHOME gt guide java apache NT4W2K You should add the following four lines after the four Alias lines in the httpd conf file lt Directory proxy gt Order Deny Allow Deny from all Allow from localhost lt Directory gt lt Proxy gt Order Deny Allow Deny from all Allow from localhost lt Proxy gt Installing the Web Server for using NMR GUIDE 85 To make the change effective you must reboot your computer Alternatively you can go to the Services menu Control Panel and stop and start the Apache web server there That way you will not have to reboot your computer The Allow from localhost restricts the use of the NMR GUIDE to your local com puter If you still want to use the NMR GUIDE over the network you may write something like Allow fr
203. started when you click a file with the extension zip tar gz uue etc You can also drag and drop the file s icon into the Winzip window Then click Extract to extract one file from the archive or click Checkout to extract all files Defragment your disk Windows XP has an own tool that allows you to defragment your disk In the course of time your disk will become more and more fragmented Although an NTFS partition which is required for the NMR SUITE suffers much less from fragmentation than a FAT partition it might be a good idea to defragment it from time to time Start Programs Accessories gt System Tools Disk Defragmenter Chapter 20 Windows XP Tips and Tricks 20 1 Creating shortcut icons on the desktop 20 1 1 Creating shortcut icons to programs For frequently used programs it is convenient to create a shortcut icon on the desktop For example a shortcut to the editor notepad can be created as follows 1 Right click the Start button 2 Click Open 3 A window Start Menu will appear a Double click All Programs b Double click Accessories c Press and hold the right mouse button on the Notepad icon d Drag the Notepad icon on the desktop then release the right mouse button e Click Create Shortcut s Here Alternatively you can click Start Search to find the executable file Note pad exe and perform step c to e see also chapter 20 1 2 203 204 Windows XP Tips and Tricks 20 1 2
204. step 1 to 4 as described in chapter 5 4 6 3 In the window FTP e Click Tools Load FTP Command Script File 4 A window Load FTP Command Script Files will appear a Click in the Field Look in and find the directory in which you stored the text file see step 1 b The text file will appear click it c Click Open to start the transfer 56 Windows XP Networking 5 5 5 4 8 Telnet 5 5 1 Windows XP contains a telnet command for remote login Just enter telnet hostname in a Command Prompt to login to a remote host The telnet command can only be used to login from your PC to a remote host e g a UNIX host but not vice versa With Windows XP it is also possible to do a telnet login to a Windows XP compu ter but this feature is not very convenient Requirements for the Send function in XWIN NMR Alternatively to printing and faxing diagnostics results to Bruker BioSpin or some where else you can send the same information via electronic mail For this to work the spectrometer PC needs access to the Internet i e to an Internet gateway in your local network If the Personal Computer has not yet been set up for e mail transmission proceed as follows Install a program that allows for composing and sending e mail messages If you have Microsoft Internet Explorer 6 0 or newer we recommend to install it Inter net Explorer is bundled with an e mail application called Outlook Express Out look Express is pe
205. t 2 CDROM If you have the Hummingbird Exceed CD be aware of the following If it says Evaluation on the CD it will only work for a limited amount of time Please check if your delivery contains another Exceed CD If it does this is probably the full version If it does not you probably ordered an Evaluation CD Please use the full version if you have one 10 3 1 Installation of Exceed 7 x The installation description is given for the version 7 1 1 but is also valid for all exceed versions 7 x 1 Log in as Administrator 2 Insert the CDROM NT Toolkit 2 for NMR SUITE or the Exceed CD from Hum mingbird 3 Double click the icon My Computer 4 A window My Computer will appear 1 See www hummingbird com Installing Exceed NFS Server 91 e Double click the CDROM icon 5 A window showing the contents of the CDROM will appear e Double click setupX or setupX cmd 6 A window Hummingbird Exceed V7 1 will appear 7 Click Install Exceed a This window will show the subtitle nstallation type e Click Personal Installation b A window Choose Setup language will appear e Choose English USA you can choose any language you like but this description is written for the English one e Click OK c A window Hummingbird Setup Wizard that displays several progress bars will appear and finally show The Hummingbird Setup Wizard will install Hummingbird Exceed on your computer e Click Next d
206. t Viewer will appear e Click Application Log to see Application Events e Click System Log to see System Events e Click Security Log to see Security Events 3 Double click on an Event to get more information on it 4 Note that Events do not necessarily indicate problems If fact there are three type of events Information Warning and Error To prevent the Event Log from getting full we recommend to do the following 5 Click on one of the three Log s e g System Log Action Properties Troubleshooting 151 6 A window System Log Properties will appear 7 Set the When maximum log size is reached to one of the following e Overwrite Events as Needed e Overwrite Events Older than 7 Days 15 2 XWIN NMR does not start o gt If XWIN NMR does not start you should first look for an error message in the win dow where the XWIN NMR startup messages appear Then check if you have one of the following problems XWIN NMR does not start no error message Click the Exceed button on the Taskbar A window Choose Server or File appears The file License dat was not found You might have one of the following problems The Flexlm license manager is not installed Install Flexlm license manager from the NMR SUITE CDROM license dat has been deleted or renamed Setup the file License dat as described in chapter 12 2 4 license dat has a hidden extension txt or example
207. t every name or group you want to be a member of NmrUser e Click OK gt OK Close the window lt Username gt Properties by clicking OK Adding a global group to the local group NmrUser in a domain PC Users who want to use XWIN NMR must be member of the group NmrUser In a Domain scenario we recommend to administrate users in global groups which are added to the local group NmrUser Proceed as follows 1 Go to the icon My Computer on the desktop right mouse click Manage or Open the Microsoft Explorer Go to My Computer right mouse click Manage 2 A window Computer Management will appear 3 Click Local Users and Groups e Click Groups Highlight the group NmrUser e right mouse click Properties A window NmrUser Properties will appear e Click Add A window Select Users will appear e Select in the field Location the domain name e Inthe window Enter Network Password type in your login name and pass word e Highlight the global group you want to be a member of NmrUsers normally this is the group Domain Users e Click OK gt OK Close the window NmrUser Properties by clicking OK Part IH Tips Tricks and Troubleshooting Chapter 15 Troubleshooting 15 1 General checks 15 1 1 Windows XP Services The NMR SUITE requires the following Windows XP Services to control a spec trometer Proceed as follows 1 Click Start Settings
208. t security fixes Microsoft offers the possibility to subscribe for a newsletter that will inform you about security problems and their available fixes Open Internet explorer and type in http register microsoft com regsys pic asp You can subscribe there with your email address and after registration you can decide which kind of newsletter you want to get It is recommended to subscribe at least for the 201 202 Useful tools for Windows XP 19 1 2 19 2 19 3 Microsoft Security Notification Service to get all information about security leaks and their fixes Update of the operating system Open the Windows Explorer and click on Tools Windows Update e The Internet Explorer will open and show a page where you can choose to start the search for all necessary updates e After the search is finished you have to choose which update of the available list you like to download e Start the download and follow the instructions Winzip pack unpack zip tar gz uue files The program Winzip allows you to pack or unpack archive files The most com mon format is zip but Winzip also handles several other Windows and UNIX formats like tar gz created with gzip and uue created with uuencode An Evaluation Version of WinZip is available at www winzip com which can be used for viewing and extracting archives For creating archives you should order an official version Once Winzip is installed it is automatically
209. t ways by mouse click or by entering a command on the keyboard The following section describes some ways to start important func tions 18 Introduction Open the Management Console e My Computer gt right click Manage Working as other User e Right click on many icons choose Run as e Right click in Explorer on many applications choose Run as e Type in a command prompt runas user administrator cmd exe this will ask you for the administrator password and then open a Command prompt with administrator permissions Open the Control Panel e Click Start Control Panel e Click My Computer Control Panel e Press Ctrl Esc gt s gt c Open a Command Prompt e Click Start All Programs Accessories Command Prompt e Press Ctrl Ese gt r gt enter cmd gt click Enter Open the Task Manager e Click the RIGHT mouse button on the Taskbar gt click Task manager e Press Ctrl Shift Esc Search for files or directories e Click Start gt Search For Files or Folders e Enter Ctrl Ese gt s gt s gt click Enter e Press F3 while the focus is on the desktop if the focus is not on the desktop click on the desktop first Start the Windows Explorer e Click Start All Programs Accessories Windows Explorer e Right click Start Explorer e Double click icon My Computer on the desktop Configure the network e Click Start gt Control Panel
210. tatus e A window NFS Maestro Server Status will appear e Click Reload Exports e Click OK 5 In the window NFS Maestro Server Configuration gt Click OK 108 Installing the NMR Suite 6 If a message about the owner and permissions of spect appears e Click Yes e A window Permissions will appear e Select User Adminsitrator and enable Read Write and Execute per missions for this user e Select Group diskless_group_root and enable Read Write and Execute permissions for this group e Be sure that also other has Read Write and Execute permissions e Click Recursive Click OK 7 Close the window Control Panel by clicking the X button 11 8 Adding a user to the group NmrUser Each user who wants to run XWIN NMR must be member of the group NmrUser Adding users to this group is described in chapter 14 1 3 11 9 Check if the XWIN NMR installation is correct Double click the XWIN NMR icon SWIN NMR 3 5 unless you already have a license you will get this screen Installing the NMR Suite 109 XWIN NMR 2 5 Setting environment for using Microsoft Visual C tools CPR Path to prog C Bruker XWIN NMR prog Path to exp C Bruker XWIN NMR exp Path to conf C Bruker XWIN NMR conf waiting for FLEX1m license FLEX1m Cannot connect to license server 15 8 108047 Cnull gt gt If your workstation controls the spectrometer you may run the
211. tem configuration The showconf command provides you with various information about your hard ware and software both of the PC and of the spectrometer Here is how showconf works You double click on the respective icon in the folder Miscellaneous in the Bruker Utilities and wait the about 2 minutes until it has finished After that showconf has produced a file called confout txt that contains all you need Confout txt is located next to the showconf batch after the first execution and you edit it from there C Bruker XWIN NMR_3_O prog bin utilities Miscellaneous File Edit View Help Miscellaneous al z ESE Ea xla RE bsmsdisp Explorer get_hostid Hardware Hardware Homepage patchlevel exam list O A A A A l a Ping spect printconf c pwrdwn bat shmrm cmd Showconf all showconf b Telnet spect Ae amp 8 amp Uxnmrinfo xwinnmrsa xwinversio taming Dont 1 object s selected 11 6KB 136 Configuration of XWIN NMR Just double click on the confout icon to call the appropriate editor E confout Notepad OL x File Edit Search Help Output of SHOWCONF Run at 63 23 1999 4 37p by administrator on BHO29498 Windows NT IP Configuration Host Name bhO29498 bruker com DNS Servers 16 1 32 1 Node Type Broadcast NetBIOS Scope ID 4 IP Routing Enabled WINS Proxy Enabled NetBIOS Resolution Uses DNS Ethernet adapter E196x2 Description 3Com 3C96x Ethernet Adapter Phy
212. ter s icon b Click Printing Preferences in the pop up menu 8 A window Printing Preferences will appear a Click Advanced a Click in the Field Paper Size b Select the correct paper size for your printer c Click OK gt OK Step 8 makes sure that applications like Word Excel Paint and TOPSPIN will use this paper size as default 68 Installing a Printer 6 2 Remote printing from a PC to a PC 6 2 1 On the PC to which the printer is physically connected If the printer is not installed yet e Install the printer as described in chapter 6 1 During this installation you have to choose between shared and not shared click Shared If the printer is already installed as a local printer a Log in as Administrator b Click Start Printers and Faxes c Click the right mouse button on the printer icon and select Sharing d A window lt printer name gt properties will appear e Click Shared e In the field Share Name enter the name under which the printer can be accessed on the network e g viola_deskjet e Click OK e Close the window Printers by clicking the X button 6 2 2 On the PC from which you want to print 1 Click Start Printers and Faxes 2 A window Printers will appear e Double click the icon Add Printer 3 A window Add Printer Wizard will appear a Click Network printer b Click Next c A window Locate your printer will appear enable one of the three f
213. the default gateway if a default gateway exists If your PC is not physically connected to the laboratory network you can use any IP address subnet mask and domainname for the external network configuration A frequently used IP address for such a standalone computer is 192 168 0 1 This address is not assigned to any network computer by world wide agreement However for the spectrometer internal network you must use the values as speci fied below Perform the following steps according to the necessities of your setup Create a New Network Connection eC rrntan ek wn ep Log in as Administrator Click Start Control Panel gt Network Connections A window Network Connections will appear Click on Create a new connection on the left side of the window A window Network Connection Wizard will appear gt NEXT Enable Connect to the Internet NEXT A window Now Getting Ready will appear Enable Connect using a broadband connection that is always on NEXT A window Completing the New Connection Wizard will appear gt Click FIN ISH Configuring the TCP IP of an existing Network Connection NA a bh NY Log in as Administrator Click Start gt Control Panel gt Network Connections A window Network Connections will appear Highlight the connection you want to configure File gt Properties Highlight the TCP IP entry and click Properties The window nternet Protoc
214. the host for which is was created How do I know if my license is Floating or Node Locked You can recognize this from the syntax of the license FEATURES in the 1i cense dat file on PC c flexlm bruker licenses license dat on SGI Linux ausr local flexlm Bruker licenses license dat If the entry gt HOSTID appears after the encrypted password the license is Node locked and can only be used on the local PC FEATURE XWINNMR3 bruker_ls 0 0 5 nov 2016 3 9B1EA0113CD53A883974 HOSTID 006008d244fe vendor_info Node locked license for three parallel sessions of XWIN NMR that can be started on the local PC FEATURE XWINNMR3 bruker_Is 0 0 5 nov 2016 3 9B1EA0113CD53A883974 vendor_info 12 13 14 15 16 Floating license for three parallel sessions of XWIN NMR that can be started on every PC in the local network How can I determine the hostid of my PC See chapter 12 2 2 How do I install a license full or demo on my PC See chapter 12 2 Does a Demo license require SERVER DAEMON lines in License dat No a Demo license is Node Locked and therefore only requires FEATURE lines If SERVER and or DAEMON lines exist they are ignored I have a Floating license Must the file License dat be identical on all hosts server and clients Yes you can install 1icense dat on the server and then copy it to all clients Must the Flexlm license manager run on all hosts in the network No it only n
215. tings 20 3 1 Configuring the Taskbar 1 Right click the Taskbar 2 Click Properties 206 Windows XP Tips and Tricks 20 3 2 20 3 3 20 3 4 3 A window Taskbar Properties will appear e De select the item Always on top click OK This will create more space on the desktop Hide known file extensions See chapter 16 1 3 1 Open the Explorer 2 Click the menu Tools Folder Options 3 In the Folder Options window a Select VIEW b Unselect Hide file extensions for known file types if it is selected c Click OK Show hidden files and folders 1 Open the Explorer 2 Click the menu View Options 3 In the Folder Options window a Select VIEW b Select Show hidden files and Folders c Click OK Configuring the GNU shell The GNU shell is delivered on the CD NMR SUITE for Windows 2000 Windows XP and is automatically installed together with the installation of XWIN NMR It provides a set of UNIX commands By default the resize and cut amp paste func tions are not active Making the GNU window resizable by default 1 Click Start All Programs Bruker TOPSPIN gt GNU Shell 2 A GNU shell window will appear 1 The taskbar is usually but not necessarily at the bottom of the screen Windows XP Tips and Tricks 207 a Click the symbol in the upper left corner of the window b Click Properties 3 A window GNU shell properties will appear a Click
216. tion error detected and fixed ERROR 0201 No such file or directory Press RETURN to continue A normal error during downloading the new firmware see above requires to do the download once again If you have done a download of newer firmware you have to do cf again If you do not need any downloads you can follow the instructions in the command prompt to end this tool 13 4 Configuring the BSMS Keyboard For a full describtion how to configure the BSMS Keyboard see your e hard copy of BSMS User Manual or Configuration of XWIN NMR 135 13 5 e the respective entry on the BASH CD ROM Order Number Z36541 A configuring step that should be done periodically is the spin rate calibration For this you have to go into the Menu mode of your BSMS keyboard press simultaneously 2nd and Y then rotate the control knob as long as you see 1 Sample in the display press 2nd to go into this directory The display will show 1 1 Spin calib press 2nd to start this process and wait for 3 min utes In this Menu mode you can also define the helium warning level If the liquid helium reaches the critical point the BSMS Keyboard starts beeping A special password the so called security code is required to be able to change the setting If in doubt about the setting contact your service representative For an additional possibility to get a warning about a low helium level see chapter 21 4 A log of the entire sys
217. tocol or NetBIOS network service is not installed For this you should have a look at Start Control Panel Network Connections Click on the LAN entry of your ethernet card File Settings A window Local Area Connections Properties will appear Look if there is an entry Internet Protocol TCP IP e Yes click on it to highlight the entry Properties e No see 5 1 1 A window Internet Protocol TCP IP Properties will appear Click on Advanced A window Advanced TCP IP Settings will appear make sure that the entry Enable NetBIOS over TCP IP is enabled 154 Troubleshooting o gt Also click e Start Control Panel gt Administrative Tools e Double click Services e A window Services will appear make sure that server and TCP IP NetBIOS have the status started Failed to register Kernel Service the Service Nutcracker Kernel is probably not running Click Services in the Control Panel select Nutcracker click Start Cannot find resolution file Reboot the computer and try again If you get the following error message Xcpu Cannot get visual class PseudoColor Please configure your X Server to PseudoColor and 8 bit per plane visual class TrueColor not supported Please configure 8 bit per plane The Color Palette of the Display Properties is probably not set to 256 colors Click Start Settings Control Panel Display
218. tor e g notepad and delete all lines except those that describe the hardware components of your spectrometer You can get this information in the following way check the list in the file gt hardware exam with the components of your spectrometer and or with the Bruker BioSpin delivery note s Please carefully check the PN C D E and ECL numbers of the components e Save and exit from hardware exam e Copy the modified file hardware exam into the directory lt XWINNMRHOME gt conf instr lt spect rometer name gt e Rename the file lt XWINNMRHOME gt conf instr hardware exam to lt XWINNMRHOME gt conf instr hardware_list 13 1 4 If you added a new hardware component to your spectrometer If you want to add a new hardware component it is recommended to order some l body of your local Bruker BioSpin office to do this for you e Ifyou have to add a new hardware component to the configuration file of the soft ware do the following e Enter cf makelist in the XWIN NMR window this will create a file gt hardware exam in the directory lt XWINNMRHOME gt conf instr Configuration of XWIN NMR 129 e Open this file with a text editor e g notepad and search and copy these line s that describe the new hardware component s Please carefully check the PN C D E and ECL number s of the component s e Copy the file lt XWINNMRHOME gt conf instr spect hardware_list to lt XWINNMRHOME gt conf instr spect
219. tore plot files in a different directory by setting the environment variable XWINNMRPLOTFEILES in the following way 1 Click Start Settings Control Panel gt Advanced 2 Double click the icon Enviroment Variables 3 A window Enviroment Variables will appear Plotting and Printing under Windows XP 191 a Click New 4 A window New User Variable will appear a In the field Variable Name enter XWINNMRPLOTFILES b In the field Variable Value enter a directory of your choice e g C users guest plot c Click OK OK gt OK 5 Close the window Control Panel by clicking the X button 17 1 4 Plotting from XWIN NMR into Enhanced Metafiles 17 1 5 XWIN NMR supports the creation of Microsoft Windows Enhanced Metafiles These can be read from any Microsoft program e g Word Powerpoint etc You can create an Enhanced Metafile in the following way a Enter edo b Click the small arrow button to the right of the field CURPLOT c Select Enhanced Metafile d Enter plot The name of an Enhanced Metafile consists of the creation date and time and the extension emf e g 9803091621 emf This file was created at 9 March 1998 at 16 21 PM Enhanced Metafiles are stored in the directory XWINNMRHOME plotfiles For a typical installation on partition C this is C Bruker Xwrn nmr plot files If you want to store them in a different directory you must set the environ ment variable XWINNMRPLOTFILES as
220. u want to for mat this partition press F to start formatting and wait A window Your Computer will reboot in 15 s will appear Remove any Floppy but keep the CD in its drive After the reboot the setup will continue automatically A window Windows XP Setup occurs please wait A window Windows XP Professional Setup will appear a Click NEXT or wait for a short time b Installing Devices wait c Regional Settings e Normally you could leave English United States for system locale Set the right keyboard layout NEXT d Personalize Your Software e Type in your name and organization NEXT e Your Product Key see list in chapter 21 1 Enter the Product ID which is specified on the manual Microsoft Win dows XP Professional on the Certificate of Authenticity NEXT f Computer Name and Administrator Password see list in chapter 21 1 e Enter the Name hostname you have chosen for your computer Note that the first character must be alphanumeric and underscores are not allowed e Choose an Administrator password and enter it in the field Password enter the same password in the field Confirm Password NEXT Important remember the Administrator password g Date and Time Settings e Check if Date amp Time are set correctly change if necessary Select the correct time zone for your location e g 32 Installing and configuring Windows XP Professional
221. ve gt fs ntfs The system will ask you to schedule the actual conversion for the next boot up and you will reply with y as shown below Command Prompt C gt convert c fsintfs The type of the file system is FAT Convert cannot gain exclusive access to the C drive it cannot convert it now Would you like to schedule it to be converted the next time the system restarts Y N y The conversion will take place automatically the next time the system restarts C2 gt you do NOT need to re boot now and wait the 2 3 minutes for it to complete Just Configuring Windows XP 41 move on with the operations explained in the next chapter The conversion to NTFS will automatically be done during the next re boot 4 1 3 Cutting down the re boot time 4 2 1 Click Start Control Panel double click on System A window System Properties will appear 2 Click Advanced Startup and Recovery Startup and Recovery System startup Default operating system Microsoft Windows XP Professional Fastdetect Time to display list of operating systems 3 E a lt Time to display recovery options when needed 30 seconds To edit the startup options file manually click Edit System Failure Write an event to the system log Send an administrative alert Automatically restart Write debugging information Small memory dump 64 KB Small dump directory SystemRoot Minidump The default
222. want to proceed prompt Those vary in shape and text but most likely every product will have one Confirm File Deletion Q 218 Appendix Once confirmed the actual un installation process starts and you will see progress messages Remove Programs From Your Computer xi unlnstallShield will remove the software Bruker Diskless 980701 from your computer Please wait while each of the following components is removed Shared program files Standard program files Folder items Program folders Program directories Program registry entries Important Sometimes you are prompted whether or not you want to delete certain components These are mostly shared libraries that sit in system directories and may or may not be used by other components Please leave them in the system do NOT delete them except you are absolutely positive that they belong to the current installation only In many cases you can tell from the filename or its location in a sub directory of the applications home spot that this is a save thing If in doubt leave them on with 10 15 Gigabytes you can afford to loose a few hundred Kilo byte here After all you normally don t un install three dozen applications Eventu ally all the different aspects of removing a piece of software are automatically covered by the un installer and the OK button comes up to take your confirmation Remove Programs From Your Computer SMS MAS ASS
223. xt messages and graphics shown in this book are taken from the current version of the respective software products Small differences to other ver sions are possible but generally speaking they should be very similar If you have any comments or suggestions or if you find any errors in this manual please do not hesitate to contact us at nmr software support bruker biospin de Conventions Bold Courier Windows XP commands to be entered from the keyboard Bold Times Windows XP commands applications or buttons to be clicked with the mouse Bold Courier Italics NMR SUITE commands to be entered from the key board Bold Times Italic NMR SUITE commands to be clicked with the mouse Courier a file name or directory name Courier Small Italics response of the system Courier Small the contents of a file Times italics any name which is not a file name e g hostnames usernames etc lt gt place holder Introduction 13 1 3 1 3 1 1 3 2 Hardware and software requirements for NMR Suite Special PC Hardware requirements To run XWIN NMR we recommend the following computer hardware e PC with CPU Clock 1 GHz e Memory 2 512 MB e Video graphics card memory 64 MB l e Ethernet card to control a spectrometer it is essential to have a second eth ernet card e Mouse with 3 button possibilities If your hardware does not meet these requirements XWIN NMR might still run but with a much lower performance The I
224. you are logged in as Administrator If you are not sure about this press Ctrl Alt Del just as for a logon The upcoming screen tells you the current user id If you are indeed logged in as Administra tor click Cancel Otherwise click logoff and then log on as Administrator 2 Click Start Control Panel System and check if Windows XP Windows 2000 or Windows NT 4 0 Service Pack 3 is installed see also chapter 3 1 3 Click Start All Programs Accessories Command Prompt enter ipconfig all and check if the network is configured If it is not configure the network as de scribed in chapter 5 4 Click Start All Programs and check if you see the entry Exceed If this do not appear you must install this package as described in chapter 10 respectively Exceed is required to run XWIN NMR 97 98 Installing the NMR Suite 11 1 1 5 As a Local Administrator click Start Control Panel Administrative Tools Computer Management Services and Applications and check if you see the entry Apache web service If it not appear and you want to run the NMR GUIDE you must install it as describe in chapter 8 6 Click Start Control Panel Display Settings and check if the Color Palette is set to 256 and the Desktop Area to 1024 786 or 1280 1024 If it is not correct these settings see chapter 3 4 If your PC controls a spectrometer 1 Click Start All Programs and check
225. your network e g the PC of the responsible person for helium refill You could do this in the following way Open a Command Prompt and enter ed d c Bruker XWIN NMR e notepad heliumwarn cmd type in the following text echo off Lem rem heliumwarn cmd example MS cmd script to send a warning rem argument 1 LEVEL rem argument2 LIMIT rem rem user defined variables rem INSTRUMENT is the name of the spectrometer rem ADDRESS the address where the message is sent to rem type net help send for details rem 224 Appendix set INSTRUMENT Avance 300 set ADDRESS1 SCOMPUTERNAMES set ADDRESS2 NMR SUPERUSER PC set ADDRESS3 SHELIUM REFILLER PC rem rem catch command line arguments rem set MYSELF 0 set LEVEL 1 set LIMIT 2 rem rem get the name of the spectrometer host rem set HOST SCOMPUTERNAMES rem rem prepare th mail message rem set MSG Attention At the magnet of the SINSTRUMENT S spec trometer is the heliumlevel of SLEVEL equal or lower than the helium level limit of SLIMIT please order liquid he lium and refill the helium tank This message has been sent by MYSELF S on HOST to ADDRESS1 SADDRESS2 and SADDRESS3 rem rem send the messag rem net send SADDRESS1

NMR SUITE 3.5 Installation Guide for Windows XP

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