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Spectramax® m2/m2 user guide

1. c lt b LO 38 SpectraMax M2 SpectraMax M2e Multi mode Plate Readers User Guide 0112 0102 Rev D 6 Troubleshooting This chapter lists error codes that may occur while using the instrument followed by their most likely causes and remedies Maintenance procedures are described in the previous chapter For problems with the SpectraMax M2 or SpectraMax M2 that are not listed here in the U S contact Molecular Devices Technical Services group at 1 800 635 5577 elsewhere call your local representative 2 j fe c 7 3 e le gt e AA BIOHAZARD lt is your responsibility to decontaminate the instrument as well as any accessories before requesting service by Molecular Devices representatives and before returning the instrument or any components to Molecular Devices Corporation 6 1 OPENING THE DRAWER MANUALLY gt If an error occurs while the drawer is closed and you need to remove a microplate press the DRAWER key gt If the drawer does not open turn power to the instrument off and then on again If the drawer still remains closed turn the power off and using your thumbnail locate the groove in the upper left side wall of the door Open the door and with your index fin ger pull the microplate drawer out of the instrument do not force the drawer and remove the microplate This action will not harm the instrument but should only be taken if the fir
2. gt 2 z y 14 e h Le D is p e gt 2 Principles of Operation based assays and also makes it confusing to compare results between microplate readers and spectrophotometers The standard pathlength of a cuvette is the conventional basis for quantifying the unique absorbtivity properties of compounds in solution Quantitative analyses can be performed on the basis of extinction coefficients without standard curves e g NADH based enzyme assays When using a cuvette the pathlength is known and is independent of sample volume so absorbance is proportional to concentration In a microplate pathlength is dependent on the liquid volume so absorbance is proportional to both the concentration and the pathlength of the sample Standard curves are often used to determine analyte concentrations in vertical beam photometry of unknowns yet errors can still arise from pipetting the samples and standards The PathCheck feature automatically determines the pathlength of aqueous samples in the microplate and normalizes the absorbance in each well to a pathlength of 1 cm This novel approach to correcting the microwell absorbance values is accurate to within 2 5 of the values obtained directly in a 1 cm cuvette Horizontal Vertical light path light path Cuvette Microplate wells Figure 2 1 Cuvette and microwell light paths Reference measurements made by reading the cuvette Cuvette Reference or using fac
3. 6 The optimal excitation and emission wavelengths are those determined in steps 2f and 5b above 7 Comments In endpoint or kinetic fluorescence modes the Autofilter feature generally selects the same cutoff filter wavelength as the above optimization method If desired however you may specify the cutoff filters manually For emission wavelengths less than 325 nm experimental iteration is usually the best method of determining the optimal emission and excitation wavelengths Begin opti mization by performing steps 2 5 above Try emission and excitation wavelength com binations with the 325 nm cutoff or with no cutoff filter Similarly for excitation wavelengths greater than 660 nanometers try emission and excitation wavelength combinations with the 695 nm cutoff or with no cutoff 4 Cutoff risons Fit fas Cutoff Filter Comparisons 535 Wavelength nm o Plot 1 495cutoff Wavelength vs 495 cutoff o Ploi 2 495o0utoff Wavelength vs 515 cutoff a Ploi 3 495outoff wavelength vs 530 cutoff Plot 4 40Scutoff Wavrzlength vs 550 cutoff Figure 4 2 Effects of cutoff filters on fluorescein Emission was scanned from 490 to 560 nm excitation was fixed at 485 nm gt O Le E o SpectraMax M2 amp SpectraMax M2e Multi mode Plate Readers User Guide 0112 0102 Rev D 31 c 2 pa o Q 32 4 Operation Figure 4 2 shows the effects o
4. 1 2 4 THE CUVETTE CHAMBER Located at the right front of the SpectraMax M2 and SpectraMax M25 the cuvette chamber has a lid that lifts up allowing you to insert or remove a cuvette The chamber contains springs that automatically position the cuvette in the proper alignment for a reading The cuvette door must be closed before initiating a reading 6 SpectraMax M2 amp SpectraMax M2e Multi mode Plate Readers Operator s Manual 0112 0115 Rev D 1 2 Components Figure 1 4 The cuvette chamber bh U Oo o Le e e gt Cuvettes The SpectraMax M2 and SpectraMax M2 can accommodate standard height 45 mm 1 cm cuvettes and 12 x 75 mm test tubes when used with the test tube cover Figure 1 5 Not all manufacturers cuvettes are the same with regard to design materials or configuration Temperature uniformity within the cuvette may vary depending on the type of cuvette used Cuvettes used for absorbance readings are frosted on two sides Be sure to handle cuvettes on the frosted sides only Place the cuvette into the chamber so that the reading clear sides face left and right Fluorescence cuvettes are clear on all four sides and should be handled carefully Place a frosted cuvette into the chamber so that the reading clear sides face left and right Semi micro and ultra micro cuvettes can also be used with an adapter Figure 1 5 Test tube cover SpectraMax M2 amp SpectraMax M2e
5. A 5 Fluorescence fluorochrome manufacturers are generally in methanol and do not reflect actual values due to changes in pH salt content etc A 5 FLUORESCENCE Fluorophore Excitation Wavelength nm Emission Wavelength nm HPPA 320 405 4 MeU NADH NADPH 355 460 Biotinidinase 355 544 PKU 390 485 Green Fluorescent Protein 390 510 Attophos Attofluor 444 555 FITC 485 538 Ethidium Homodmer DNA 530 620 TRITC Ethidium Bromide 544 590 Texas Red 584 612 TAMRA 547 580 Tryptophan 280 340 La Jolla Blue 695 705 A 6 TIME RESOLVED FLUORESCENCE xipuaddy y Fluorophore Excitation Wavelength nm Emission Wavelength nm Eu Chelate 360 610 SpectraMax M2 SpectraMax M2e Multi mode Plate Readers User Guide 0112 0102 Rev D 55 x 3 c D o 2 lt x lt 56 A Appendix A 7 A 8 LUMINESCENCE Fluorophore Wavelength nm Emerald and Emerald II 542 Sapphire and Sapphire ll 461 Ruby 620 a Emerald Emerald II Sapphire Sapphire II and Ruby are trademarks of Tropix Inc GLOSSARY Absorbance Absorbance is the amount of light absorbed by a solution To measure absorbance accu rately it is necessary to eliminate light scatter In the absence of turbidity absorbance optical density A log 1 1 where Ip is incident light and I is transmitted light In this user guide we use the terms absorban
6. 1 2 1 THE CONTROL PANEL The control panel consists of a 2x20 character LCD and eleven pressure sensitive membrane keys that can be used to control some functions of the instrument When you press a control panel key the instrument performs the associated action Note that settings made in SoftMax Pro software override control panel settings The left side of the display shows the cuvette temperature both actual and set point and whether or not the temperature is at the set point enunciator blinks if not at set point To see the microplate chamber temperature you must use SoftMax Pro software SpectraMax M2 amp SpectraMax M2e Multi mode Plate Readers Operator s Manual 0112 0115 Rev D 3 c 2 pu a N o m 1 Description The middle of the display shows the wavelengths for absorbance excitation and emission The right side of the display shows the data received from the reading as absorbance percent transmission fluorescence emission or excitation or luminescence and indicates whether or not a reference measurement was made enunciator blinks if no reference reading was taken To change the contrast on the control panel press T A RFU and the temperature up or down setting keys Uerifsins Fluorescence E Absorbance Electronics Aspa e AAA ro TEMP A A Drawer Figure 1 2 SpectraMax M2 and SpectraMax M2 control panel Temp On Off Key The TEMP on off key en
7. Use of Automix is strongly recommended for ELISAs and other solid phase enzyme mediated reactions to enhance accuracy 2 8 4 COMPUTER CONTROL The SpectraMax M2 and SpectraMax M2 are equipped with an 8 pin DIN RS 232 serial port through which the computer communicates with the instrument Different types of cables are available for connecting to different types of computers refer to the section Cables in the Appendix of this guide N y gt 2 2 y 14 o gt 2 Le 17 is a e gt SpectraMax M2 amp SpectraMax M2e Multi mode Plate Readers User Guide 0112 0102 Rev D 19 2 Principles of Operation 2 pm e Q e Un e 172 2 2 a N 20 SpectraMax M2 amp SpectraMax M2e Multi mode Plate Readers User Guide 0112 0102 Rev D 3 Installation ZA WARNING Always make sure the power switch on the instrument is in the OFF posi tion and remove the power cord from the back of the instrument prior to any installation or relocation of the instrument ZA WARNING Do not operate the instrument in an environment where potentially damaging liquids or gases are present A WARNING Do not operate the instrument in cold room with a temperature below 15 C A CAUTION Do not touch or loosen any screws or parts other than those specifically designated in the instructions Doing so might cause misalignment and voids the instru ment warranty 3
8. max Onset Time Kinetic readings can be single or multiple wavelength readings Luminescence The emission of light by processes that derive energy from essentially non thermal changes the motion of subatomic particles or the excitation of an atomic system by radi ation SpectraMax M2 amp SpectraMax M2e Multi mode Plate Readers User Guide 0112 0102 Rev D 57 A Appendix Photomultiplier tube PMT A vacuum tube that detects light especially from dim sources through the use of photoe mission and successive instances of secondary emission to produce enough electrons to generate a useful current Read Mode The type of reading performed absorbance fluorescence or luminescence Read Type The method used to read the microplate endpoint kinetic spectrum or well scan Readings Per Well The number of times user definable that readings are taken on a well in fluorescence mode or the amount of time that data is collected using the luminescence read type SoftMax Pro An integrated software program from Molecular Devices Corporation that is used to con trol and collect data from all Molecular Devices plate readers Stokes Shift The difference between the wavelengths of the excitation and emission peaks Time Resolved Fluorescence Most fluorescence substances are not suitable for this type of reading However the fluo rescence emitted by lanthanide dyes is delayed long enough to measure fluorescence af
9. 0112 0115 Rev D 2 1 2 2 2 3 2 4 2 Principles of Operation ABSORBANCE Absorbance is the amount of light absorbed by a solution To measure absorbance accurately it is necessary to eliminate light scatter In the absence of turbidity absorbance optical density A log 1 1 where Jp is incident light and is transmitted light In this user guide we use the terms absorbance and optical density interchangeably OPTICAL DENSITY Optical density is the amount of light passing through a sample to a detector relative to the total amount of light available Optical density includes absorbance of the sample plus light scatter from turbidity TRANSMITTANCE Transmittance is the ratio of transmitted light to the incident light T 1 D T 100T where Jp is incident light and is transmitted light PATHCHECK The Beer Lambert law states that absorbance is proportional to the distance that light travels through the sample A ebc where A is the absorbance is the molar absorbtivity of the sample 6 is the pathlength and c is the concentration of the sample In short the longer the pathlength the higher the absorbance Microplate readers use a vertical light path so the distance of the light through the sample depends on the volume This variable pathlength makes it difficult to perform extinction SpectraMax M2 amp SpectraMax M2e Multi mode Plate Readers User Guide 0112 0102 Rev D N y
10. 75 uL in 384 wells 67 pM 15 pM fluorescein 250 850 nm Emission wavelength range 360 850 nm SpectraMax M2 250 850 nm SpectraMax M2 Scanning provided over full range in 1 nm increments Number of excitation emission 4 pairs per plate Bandwidth excitation emission 9 9 nm Dynamic range 10 in 96 well black plates auto gain circuitry System validation Self calibrating with built in fluorescence cali brators Light source Xenon flash lamp 1 joule flash Average lamp lifetime 2 years normal operation Detector Photomultiplier R3896 SpectraMax M2 amp SpectraMax M2e Multi mode Plate Readers User Guide 0112 0102 Rev D 7 1 SpectraMax M2 and M2 Performance Specifications LUMINESCENCE PHOTOMETRIC PERFORMANCE Detection limit 384 well microplate 10 amol well alkaline phosphatase 200 uL Wavelength range 250 850 nm TIME RESOLVED FLUORESCENCE PERFORMANCE Detection limit 384 well microplate 0 5 fmol well Eu Ch Wavelength range 250 850 nm PHOTOMETRIC ANALYSIS MODES Front Panel Operation Single wavelength Absorbance Trans mittance Fluorescence reading of the cuvette or test tube Using SoftMax Pro Express data as Absorbance Transmit tance Fluorescence Luminescence Single wavelength reading of microplate and or cuvette Multiple wavelength up to four reading of microplat
11. C Typically the microplate chamber reaches 37 0 C in less than 30 minutes The microplate chamber temperature is maintained at the set point until you press the incubator TEMP on off key again turning temperature regulation off Should you turn the incubator back on after a momentary shutdown allow about ten minutes for the control algorithm to fully stabilize the microplate chamber temperature N y gt 2 O 7 e gt O Le 17 E i e gt Temperature regulation and control of the microplate chamber is achieved through electric heaters a fan efficient insulation and temperature sensors The heaters are located in the microplate chamber which is insulated to maintain the temperature set point The sensors are mounted inside the chamber and measure the air temperature The temperature feedback closed loop control algorithms measure the chamber air temperature compare it to the temperature set point and use the difference to calculate the regulation of the heating cycles This technique results in accurate precise control of the chamber temperature with a temperature variation of the air inside the chamber of less than 1 0 C The temperature uniformity within the microplate depends on its design and composition SpectraMax M2 amp SpectraMax M2e Multi mode Plate Readers User Guide 0112 0102 Rev D 17 2 pm da oa Uan e e 2 2 a
12. Multi mode Plate Readers Operator s Manual 0112 0115 Rev D 7 1 Description 1 2 5 THE BACK PANEL The following components are located on the back panel of the SpectraMax M2 and SpectraMax M2 gt Power switch a rocker switch labeled I O for on and off respectively gt Power cord receptacle plug the power cord in here gt Fuse box cover cannot be opened while the power cord is plugged in When opened it provides access to the fuse box containing two fuses that are required for operation gt Computer port double shielded 8 pin RS 232 serial for use with an external computer plug one end of an 8 pin DIN serial cable into this port the other end attaches to the serial modem port of the computer gt Printer port not used in the SpectraMax M2 or SpectraMax M2 gt Label provides information about the reader such as line voltage rating cautionary information serial number etc Record the serial number shown on this label for use when contacting Molecular Devices Technical Support c 2 pu a 72 m Sl Fuse Box Cover Power Switch Power Cord E Receptacle Label 7 Computer Printer Port Port Figure 1 6 Schematic of the back panel of SpectraMax M2 and SpectraMax M2 SpectraMax M2 SpectraMax M2e Multi mode Plate Readers Operator s Manual
13. absorbance maximum of the fluorophore If necessary the absorbance maximum can be determined by performing an optical density spectral scan first c Set the excitation scan to start stop approximately 50 nm below above the tentative excitation value obtained from the literature or customary excitation filter d Set the step increment to 2 or 3 nm You may choose to do a preliminary scan with a 10 nm increment to determine the approximate peak location and then repeat the scan over a narrower wavelength range with a 2 nm or 3 nm increment e Perform the scan and view the results as a plot of emission fluorescence vs excitation wavelength Note the excitation wavelength at the emission peak and the maximum RFU value If an error message reporting missing data points occurs it may be due to possible saturation reported by SoftMax Pro at the end of the spectral scan Reset the PMT to low and re scan the sample scan the buffer blank with the PMT set to medium or high If the error occurs after scanning with the PMT set to low it may be necessary to dilute the sample If the excitation scan shows no apparent peak change the PMT setting to high and re scan the sample If the spectral scan still shows no apparent peak adjust the Y scale of the zoom plot so that the plot fills the graph f Select the optimal excitation wavelength If the excitation peak wavelength and emis sion wavelength are separated by mor
14. between these computers and the instru ment using a USB to serial adapter Molecular Devices has tested many third party serial to USB adapter cables and has found the Keyspan USA 19HS Molecular Devices PN 9000 0938 to be the most reli able It is the only one we recommend Figure A 1 Molecular Devices custom serial cable left and a serial to USB converter right SpectraMax M2 SpectraMax M2e Multi mode Plate Readers User Guide 0112 0102 Rev D xipuaddy vy 51 A Appendix A 2 ACCESSORIES Description Part SpectraTest ABS1 Absorbance Validation Test Plate 0200 6117 SpectraTest FL1 Fluorescence Validation Test Plate 0200 5060 Cuvette Absorbance Validation Kit 9000 0161 SpectraPlate Quartz UV transparent microplate R8024 Fuse 4 amp Time Delay 4601 0013 Fuse 4 amp 5 x 20 mm Time Delay 4601 0014 Power Cord US Canada Japan Mexico India 4400 0002 Power Cord EC1 Germany France Scandinavia Italy Korea 4400 0036 Power Cord EC2 UK Indonesia Singapore Malaysia 4400 0037 Power Cord AP1 Australia Hong Kong China 4400 0038 SpectraMax Mouse Pad 9000 0133 Cable RS 232 8 pin DIN to 8 pin DIN instrument to pre G3 Macintosh 9000 0091 Cable RS 232 9 pin DIN to 8 pin DIN instrument to PC serial port 9000 0149 Adapter USB Serial High Speed KeySpan adapter instrument to USB only 9000 0938 instrument Test Tube Cover 2300 0277 A
15. enue mau eee E Oe AEE ado 27 Optimizing Fluorescence Assays ha ri wk 28 SpectraMax M2 amp SpectraMax M2e Multi mode Plate Readers User Guide 0112 0102 Rev D iii Contents 5 Maintenance n 2 E Technical Support ia e a da a 33 7 Moving a SpectraMax M2 or MO 3 24 685 o55 G8 odie ls 34 O General Maintenance AS A AA AAA 34 CLAMA 0 A A A A 34 Cleanino the Parr Piet opt ri a ta id os ta 35 Changing the Buses eonen ea a O o e a a E e a a al 35 6 Troubleshooting Opening the Drawer Manually AA as 39 Error Codes and Probable Causes lios ais ita delas dela 39 7 Specifications SpectraMax M2 and M2 Performance Specifications 0000s sees ee eee 45 A Appendix Cable ATA RD Be et ea Sha ee oe Tae pee Yee hes 51 ARCOS aos na ads BOR ened BNE aia 52 Cuvettes in SpectraMax M2 and SpectraMax M2 1 eee ee 52 Common Wavelengths for Fluorescence and Luminescence oooooooomooo 54 Fluorescence 47 thes A care erie NAO 55 Time Resolved PIiGreseeni ce ia o iste n nerra 55 LUMINESCENCE yup sh coh tp Eain oa ODE AN tat Neda aA E irish to shinee te 56 Glossary cre wis ech eg oe RS oe HERR E Rea ADA he Rhee ge Reed py 56 System Diagrams and Dimensions ii as eae ed wee a a 58 SpectraMax M2 amp SpectraMax M2e Multi mode Plate Readers User Guide 0112 0102 Rev D 1 Description 1 1 INTRODUCTION The SpectraMax M2 and SpectraMax M2 Multi detection Readers are monochromator based microplate re
16. for absorbance read ings above 200 nm low volume 384 well plates Use purple adapter plate only with 96 and 384 well plates Cuvettes Standard height 45 mm cells with 10 mm pathlength 12 5 mm x 12 5 mm outside with minimum inside width of 4 mm typical for 3 mL volume cells See the section Cuvettes in SpectraMax M2 and SpectraMax M2 in the Appendix for more information Test tubes 12 x 75 mm test tubes can be used in the N n Le O o o D mg o gt D cuvette chamber with the test tube cover GENERAL INSTRUMENT Display 2x20 character backlit LCD Operating panel 11 key membrane keypad Self diagnosis Continuous on board diagnostics Spill control Drawer mechanism and reading chamber assembly protected from accidental spillage by drainage ports Computer interface 8 pin DIN RS 232 serial double shielding required Printer interface Parallel 25 pin to Centronics double shielding required Microplates supported All 6 to 384 well and strip well microplates including lids SpectraMax M2 amp SpectraMax M2e Multi mode Plate Readers User Guide 0112 0102 Rev D 49 YN 2 E E cb Q N N 50 7 Specifications ROBOTICS AND AUTOMATION Robot compatible drawer Positioning and plate gripping as drawer closes Integrated automation interface SoftMax Pro automation interface integ
17. of time Damage caused by the use of incompatible or aggressive solvents is NOT covered by the instrument warranty SpectraMax M2 amp SpectraMax M2e Multi mode Plate Readers User Guide 0112 0102 Rev D 33 c cb LO 34 5 Maintenance 5 2 5 3 5 4 AA CAUTION Never touch any of the optic mirrors filters or cables or their housing or manifold The optics are extremely delicate and critical to use of the instrument A CAUTION Do not touch or loosen any screws or parts other than those specifically designated in the instructions Doing so could cause misalignment and possibly void the warranty MOVING A SPECTRAMAX M2 OR SPECTRAMAX M2 If you need to relocate a SpectraMax M2 or SpectraMax M25 follow these steps ZA WARNING The SpectraMax M2 and SpectraMax M2 weigh approximately 35 pounds 15 75 kg and should be lifted with care It is recommended that two persons lift the instrument together taking the proper precautions to avoid injury 1 Remove any microplate from the drawer and then close the drawer 2 Turn off the power switch and unplug the power cord from the source and from the receptacle on the back of the instrument 3 Depending on the distance that you are moving the instrument you may want to repackage the instrument in its original shipping carton Otherwise carry the instru ment or place it on a rolling cart to transport it 4 Ensure that the new locati
18. over 50 C detected on one or more of the 4 thermistors Tempera ture will be shut off and remain off until a successful completion of power up reset 302 low light Not enough light detected to make an accu rate measurement If doing a cuvette read the cuvette door may be open 303 unable to cal dark current Too much stray light detected on power up faulty or disconnected pre amp boards 304 signal level saturation During a cuvette read could be due to cuvette door being open 305 reference level saturation During a cuvette read could be due to cuvette door being open 306 plate air cal fail low light Minimum signal reference ratio not met during air calibration SpectraMax M2 amp SpectraMax M2e Multi mode Plate Readers User Guide 0112 0102 Rev D 6 2 Error Codes and Probable Causes Error Code Error Message Notes 307 cuv air ref fail 308 stray light Light leak in reading chamber or cuvette door open Could also be a faulty pre amp board 309 front panel not respond LCD front panel bad or disconnected o ing 312 gain calibration failed Power up calibration and check of signal path gain is out of tolerance Could be due S to bad or disconnected pre amp or P excessive stray light 3 e 313 reference gain check fail Power up check of the Reference Ss amplifier s gain out of tolerance Could be lo due to b
19. reserves the right to change its products and services at any time to incorporate technological developments This user guide is subject to change without notice Although this user guide has been prepared with every precaution to ensure accuracy Molecular Devices Corporation assumes no liability for any errors or omissions nor for any damages resulting from the application or use of this information SpectraMax M2 amp SpectraMax M2e Multi mode Plate Readers User Guide 0112 0102 Rev D e e r 17 e r k 0 Contents 1 Description NS ES 1 COMPONEN S vio ebrio or A At tus E a a i 3 2 Principles of Operation ADD aia 9 Optical Denia AAA AO AA 9 Transmittance A abe N ge e N N a at NR 9 A NN NA 9 Fluorescente ii tt ld da dra 13 Time resolved Fluorescence o oooooooooooonomororcnsnonn no o 16 MN A te See Be ieee Gea SN E an OO ita an ae ah Stes 16 Functional Descriptions srip i wacvds nate EE VAS KOC RIALS ata tae a 16 3 Installation WACK A Sele sd IS Bat at 21 Setting up the Instrument ia Hae hae A A A 21 Installing the Drawer Adapter riada 22 Removing the Drawer Adapter js isis Ae Beis oe ee 23 4 Operation Cuvette Read Quick Overview 0 6 cette eet ne nnes 25 Microplate Read Quick Overview aiid tiie ne eign anid cee aie ae 25 Preparing for a Cuvette or Microplate Reading 000 eee eee 26 Red e CU tt rt hala tink lect 27 Read the Microplate ce norise eeu thw
20. the control algorithm to fully stabilize the chamber temperature SpectraMax M2 amp SpectraMax M2e Multi mode Plate Readers User Guide 0112 0102 Rev D 4 4 Read the Cuvette 4 3 3 SELECT THE WAVELENGTH For a cuvette reading press the up or down arrow keys above and below the A to increment or decrement the wavelength setting in 1 nm increments 4 4 READ THE CUVETTE 1 Insert the cuvette into the chamber making sure that the clear sides are to the left and right facing the instrument Do not touch the clear surfaces of the cuvette 2 Make sure the cuvette is completely seated in the chamber and close the cuvette door 3 Ifthe cuvette contains a blank typically this solvent contains everything that the sam ples contain except for analyte press the REF key to acquire the reference reading from the cuvette The instrument automatically calibrate in less than two seconds closes the microplate drawer if it is open and reads the cuvette according to the selected instrument settings 4 If the cuvette contains a sample touch the READ CUVETTE key to acquire the sample reading from the cuvette 5 When the reading is complete remove the cuvette 4 5 READ THE MICROPLATE AA BIOHAZARD The underside of the microplate must be dry prior to placing it in the drawer If the microplate has fluid on the underside dry it using a paper towel or equivalent before placing it in the drawer gt
21. well microplates from the top you need to install the drawer adapter 1 Power on the instrument using the switch on the back panel 2 Press the DRAWER button on the front panel or activate the drawer open command in SoftMax Pro software 3 Hold the adapter so that the label is on the front side facing up 4 Place the top back Row A portion of the adapter into the drawer first The corner cutout must be in the lower left corner where the plate pusher is located While push ing against the back edge of the adapter lower the front of the adapter into the drawer c 2 pu Ea T YN 3 22 SpectraMax M2 amp SpectraMax M2e Multi mode Plate Readers Operator s Manual 0112 0115 Rev D 3 4 Removing the Drawer Adapter Figure 3 1 Adapter inserted in microplate drawer 3 4 REMOVING THE DRAWER ADAPTER If the adapter is in the drawer and you are either reading from the bottom SpectraMax M2 only or using high profile 6 well 12 well 24 well or 48 well plates you need to remove the adapter Incorrect insertion or removal of the adapter may cause damage to the microplate drawer of the SpectraMax M2 or SpectraMax M2 1 Power on the instrument using the switch on the back panel 2 Press the DRAWER button on the front panel or activate the drawer open command in SoftMax Pro software 3 Remove the adapter plate 5 7 o gt D D T 5 Figure 3 2 Microp
22. 07 Fax 55 11 3871 9994 China Molecular Devices Beijing Tel 86 10 6410 8620 Fax 86 10 6410 8601 Molecular Devices Shanghai Tel 86 21 6887 8820 Fax 86 21 6887 8890 Germany Molecular Devices GmbH Tel 49 89 9605 880 Fax 49 89 9620 2345 Japan Nihon Molecular Devices Osaka Tel 81 6 6399 8211 Fax 81 6 6399 8212 Nihon Molecular Devices Tokyo Tel 81 3 5282 5261 Fax 81 3 5282 5262 Norway Molecular Devices Skatron Tel 47 32 859 800 Fax 47 32 859 801 South Korea Molecular Devices Korea LLC Tel 82 2 3471 9531 Fax 82 2 3471 9532 United Kingdom Molecular Devices Ltd Tel 44 118 944 8000 Fax 44 118 944 8001 www moleculardevices com 2006 Molecular Devices Corporation Printed in U S A SpectraMax is a registered trademark of Molecular Devices Corporation All other trademarks are the property of their respective owners Specifications subject to change without notice ISO 9001 2000 of North America
23. 1 UNPACKING The SpectraMax M2 and SpectraMax M2 are packed in a specially designed carton Please retain the carton and the packing materials If the unit should need to be returned for repair you must use the original packing materials and carton for shipping If the car ton has been damaged in transit it is particularly important that you retain it for inspec tion by the carrier in case there has also been damage to the instrument ZA WARNING The SpectraMax M2 and SpectraMax M2 weigh approximately 35 pounds 15 75 kg and should be lifted with care It is recommended that two persons lift the instrument together taking the proper precautions to avoid injury After examining the carton place it on a flat surface in the upright position Open the top of the box and lift the instrument along with the packing materials around the ends up and out of the shipping box Remove the packing material from both ends of the instru rr D m e 5 ment and set the instrument down carefully The packing list that accompanies the instru ment describes all components that should have been placed in the packing carton Make sure all these items are present before proceeding 3 2 SETTING UP THE INSTRUMENT 1 Place the instrument on a level surface away from direct sunlight dust drafts vibra tion and moisture 2 Turn the instrument around so that the back of the instrument is facing you SpectraMax M2 Spect
24. 2 D gt o po O 4 the instrument 5 5 CLEANING THE FAN FILTER The fan filter on the bottom of the instrument requires periodic cleaning The frequency of cleaning depends on how dusty your particular lab is and could range from once a month to once every six months 1 Turn power to the instrument OFF and then remove the power cord and cables from the back of the instrument 2 Remove any plate or adapter from the instrument drawer Turn the instrument over so that it rests flat on the bench 3 Pop the black fan cover off and remove the filter 4 Clean the filter by blowing clean canned air through it or by rinsing it first with water and then with alcohol and allowing it to dry completely 5 Place the clean dry filter over the fan and replace the black cover 6 Turn the instrument back over Reconnect the power cord and cables to the instru ment 5 6 CHANGING THE FUSES Fuses burn out occasionally and must be replaced If the instrument does not seem to be getting power after switching it on the LCD shows no display gt Check to see whether the power cord is securely plugged in to a functioning power out let and to the receptacle at the rear of the instrument If power failed while the instrument was already on gt Check that the power cord is not loose or disconnected and that power to the power outlet is functioning properly If these checks fail to remedy the loss of power follow the s
25. 2 and SpectraMax M2 are controlled by an external computer running SoftMax Pro software which provides integrated instrument control data display and statistical data analysis Cuvette port functionality can be accessed using SoftMax Pro software SpectraMax M2 amp SpectraMax M2e Multi mode Plate Readers Operator s Manual 0112 0115 Rev D 1 2 Components The on board microprocessor calculates and reports the absorbance transmittance and or fluorescence for each well of a microplate or from the cuvette port Data from multiple wavelengths can be acquired and ratio analysis can be performed during a single reading if desired and different calculations can be made based on this data using SoftMax Pro software including the subtraction of blanks use of standard curves etc For detailed reader specifications refer to the chapter Specifications in this guide 1 2 COMPONENTS The main components of the SpectraMax M2 and SpectraMax M2 are gt Control panel for cuvette chamber control gt Microplate drawer used for absorbance and fluorescence intensity read modes for endpoint kinetic well scan and spectrum scanning bh U 7 o mh Le e j gt Cuvette chamber used for absorbance fluorescence intensity read modes for endpoint kinetic and spectrum scanning gt Back panel connections and power switch Microplate Drawer Figure 1 1 SpectraMax M2 and SpectraMax M2 components
26. 3 CUVETTES IN SPECTRAMAX M2 AND SPECTRAMAX M2 The guidelines for cuvette use in the SpectraMax M2 and SpectraMax M2 are the same as those that apply to any high quality spectrophotometer The user must ensure that the meniscus is comfortably above the light beam in standard cuvettes and that the sample chamber in a microcuvette is aligned properly with the beam The light beam is 0 625 in 15 87 mm above the cuvette bottom ES 3 c D 2 2 lt x lt Below are some cuvettes that have been tested All have an optical pathlength of 1 cm 10 mm and standard external dimensions 12 5 cm x12 5 cm Their fill volumes differ only because of their different internal width and chamber height dimensions 52 SpectraMax M2 amp SpectraMax M2e Multi mode Plate Readers User Guide 0112 0102 Rev D A 3 Cuvettes in SpectraMax M2 and SpectraMax M2 A 3 1 STANDARD AND SEMI MICRO CUVETTES Several brands available Internal Width Minimum Volume Maximum Volume 10 mm 1 8 mL 4 0 mL 4 mm 0 75 mL 1 4 mL 2 mm 0 40 mL 0 7 mL A 3 2 ULTRA MICRO CUVETTES HELLMA When ordering specify the Z dimension to be 15 mm Hellma Cat No Window Size Chamber Volume Fill Volume 105 201 QS 2 0 x 5 0 mm 100 uL 120 uL 105 202 08 2 0 x 2 5 mm 50 uL 70 uL 105 210 0Sb 0 8 mm diameter 5 UL 10 uL a You must put a riser 0 8 1 mm on cuvette bottom to match the cuvette window to the beam b Y
27. Insert the filled microplate into the drawer matching well A1 with position Al in the drawer Make sure the microplate is flat against the drawer bottom for 6 12 24 or 48 well microplates or against the adapter if using top read for 96 or 386 well plates refer to the section Installing the Drawer Adapter in the chapter Installation in this guide for more information gt You must have SoftMax Pro software running on a computer connected to the instru ment Press the READ button in SoftMax Pro to start the plate read v When reading is complete the drawer of the instrument opens allowing you to remove the microplate If the incubator is on the drawer closes again after approximately 10 seconds v If you return to the SpectraMax and find the drawer closed after a reading has finished press the DRAWER key When the drawer opens you can remove the microplate For more information about plate reading please consult the SoftMax Pro User Guide a O Le D o fe SpectraMax M2 amp SpectraMax M2e Multi mode Plate Readers User Guide 0112 0102 Rev D 27 c 2 pa o Q 28 4 Operation 4 6 4 6 1 OPTIMIZING FLUORESCENCE ASSAYS INTRODUCTION The optimum instrument settings for detection of a particular fluorophore depend on a number of different factors Settings that can be adjusted for assay optimization include the excitation and emiss
28. LA Molecular Devices SpectraMax M2 M2 user guide A MULTI DETECTION MICROPLATE READER WITH TWO MODE CUVETTE PORT SpectraMax M2 SpectraMax M2 Multimode Plate Readers User Guide ka Molecular Devices Molecular Devices Corporation 1311 Orleans Drive Sunnyvale California 94089 Part 0112 0102 Rev D SpectraMax M2 amp SpectraMax M2e Multi mode Plate Readers User Guide 0112 0102 Rev D Copyright Copyright 2006 Molecular Devices Corporation All rights reserved No part of this publication may be reproduced transmitted transcribed stored in a retrieval system or translated into any language or computer language in any form or by any means electronic mechanical magnetic optical chemical manual or otherwise without the prior written permission of Molecular Devices Corporation 1311 Orleans Drive Sunnyvale California 94089 United States of America Patents The SpectraMax M2 and SpectraMax M2 and use thereof are covered by issued U S Patent nos 5 112 134 5 766 875 5 959 738 6 188 476 6 232 608 6 236 456 6 313 471 6 316 774 6 320 662 6 339 472 6 404 501 6 496 260 and foreign patents Other U S and foreign patents pending Trademarks PathCheck SpectraMax and SoftMax are registered trademarks and Automix is a trademark of Molecular Devices Corporation All other company and product names are trademarks of their respective owners Disclaimer Molecular Devices Corporation
29. N 18 2 Principles of Operation 2 8 2 READ TYPES The SpectraMax M2 and SpectraMax M2 can perform four types of read endpoint kinetic spectrum and well scan Instrument setup parameters for each read type are discussed in the SoftMax Pro User Guide Endpoint Read In an endpoint read a reading of each microplate well is taken at a single or multiple wavelengths Depending on the read mode selected values can be reported as optical density or Transmittance Kinetic Read In a kinetic read the data are collected over time with multiple readings taken at regular intervals To achieve the shortest possible interval for kinetic readings choose wavelengths in ascending order Kinetic analysis can be performed for up to 99 hours The kinetic read interval depends upon the instrument setup parameters chosen in SoftMax Pro Kinetic analysis has many advantages when determining the relative activity of an enzyme in different types of microplate assays including ELISAs and the purification and characterization of enzymes and enzyme conjugates Kinetic analysis is capable of providing improved dynamic range precision and sensitivity relative to endpoint analysis Spectrum Read Spectral analysis measures optical density or Transmittance across a spectrum of wavelengths 190 nm to 1000 nm All spectrum readings are made using the scanning monochromators of the instrument Well Scan A Well Scan read takes one or more re
30. The instrument automatically performs diagnostic checks to ensure that it is functioning correctly Turn the computer on at this time also and start the SoftMax Pro software program SET THE TEMPERATURE OPTIONAL To set the temperature within the microplate or cuvette chamber you should turn on the incubator first allowing enough time for the temperature to reach the set point before performing a reading When you first turn the instrument on up to 60 minutes may be required for the temperature within the chamber to reach the set point Turning on the incubator and choosing a temperature set point can be done using the software or the front panel of the instrument described here Temperature cannot be regulated at a set point that is lower than 4 C above the ambient temperature To enable the incubator gt Press the incubator TEMP on off key gt The LCD display indicates that temperature control is on and shows the set point and current temperature of the chamber To change the temperature set point gt Press the up or down arrow keys until the desired temperature set point is shown in the display The chamber temperature is maintained at the set point until you disable temperature control by touching the incubator key again When the incubator is off the temperature within the chamber gradually returns to ambient Should you turn the incubator back on after a momentary shutdown allow about ten minutes for
31. ables and disables the incubator that controls the temperature within both the microplate chamber and the cuvette port gt When the incubator is on the set temperature and actual temperature are shown on the front panel LCD display gt When the instrument is performing a kinetic or spectral scan the temperature keys on the front panel are disabled Temp Key The TEMP keys allow you to enter a set point at which to regulate the microplate chamber temperature Pressing this key scrolls the temperature up or down starting at the previous temperature setting or the default of 37 0 C if no setting had been made gt Pressing the up A or down V arrow once increments or decrements the displayed temperature by 0 1 C gt Pressing and holding either arrow increments or decrements the displayed temperature by 1 C until it is released You cannot set a temperature beyond the upper 45 C or lower 15 C instrument limits SpectraMax M2 amp SpectraMax M2e Multi mode Plate Readers Operator s Manual 0112 0115 Rev D 1 2 Components A Key Selects the wavelength to be used for reading the microplate manually The control panel does not display the wavelength selected through SoftMax Pro Pressing the up or down arrow key scrolls up or down through the available wavelengths starting at the previous setting gt Pressing the up A or down V arrow once increments or decrements the di
32. ad or disconnected pre amp board or excessive stray light 314 low lamp level warning 315 can t find zero order On power up grating motor could not find zero order home position 316 grating motor driver Grating motor didn t move to where it was faulty commanded to in a reasonable time 317 monitor ADC faulty 400 499 MOTION ERRORS 400 carriage motion error Carriage did not move to either of its photo interrupts in a reasonable time or can t find its photo interrupt 401 filter wheel error Filter wheel did not move to its photo interrupt in a reasonable time or can t find its photo interrupt 402 grating error Grating did not move to its photo interrupt in a reasonable time or can t find its photo interrupt 403 stage error Stage did not move to its photo interrupt in a reasonable time or can t find its photo interrupt SpectraMax M2 SpectraMax M2e Multi mode Plate Readers User Guide 0112 0102 Rev D 43 6 Troubleshooting Error Code Error Message Notes 500 599 NVRAM ERRORS 500 NVRAM CRC corrupt The CRC for the NVRAM data is corrupt 501 NVRAM Grating cal data Grating calibration data is unreasonable bad D A A a 502 NVRAM Cuvette air cal Cuvette air calibration data is unreasonable 5 data error o 5 503 NVRAM Plate air cal data Plate air calibration data is unreasonable error 2 3 504 NVRAM Carriage offset Carriage offset data is unreas
33. aders that have 6 well to 384 well microplate reading capability as well as a built in absorbance and fluorescence cuvette port The spectrophotometric performance of the SpectraMax M2 and SpectraMax M2 is similar to the SpectraMax Plus a dedicated absorbance plate reader The fluorometric performance of the SpectraMax M2 is similar to that of the Gemini XPS a dedicated top read fluorescence microplate reader The fluorometric performance of the SpectraMax M2 is similar but slightly superior to that of the Gemini EM a dedicated top and bottom read fluorescence bh g D 9 o xo e gt microplate reader SpectraMax M2 and SpectraMax M2 readers can acquire absorbance as well as fluorescence data for samples by issuing a single read command in SoftMax Pro Dual monochromators allow selection of any absorbance wavelength between 200 nm and 1000 nm any excitation wavelength between 250 nm and 850 nm and any emission wavelength between 360 nm and 850 nm SpectraMax M2 or 250 n and 850 nm SpectraMax M25 for readings of both microplates and cuvettes 1 1 1 APPLICATIONS Endpoint kinetic spectrum and multi point well scanning applications combining absorbance and fluorescence in 6 well to 384 well microplates as well as endpoint kinetic and spectrum applications in absorbance and fluorescence using cuvettes can be run with little to no optimization The extreme flexibility and high sensitivity of the SpectraMax M2
34. adings of a single well of a microplate at single or multiple wavelengths Every option available for Endpoint reads is available for Well Scans Some applications involve the detection of whole cells in large area tissue culture plates Well Scan mode can be used with such microplates to allow maximum surface area detection in whole cell assays Since many cell lines tend to grow as clumps or in the corners of microplate wells you can choose from several patterns and define the number of points to be scanned to work best with your particular application Values reported are optical density Transmittance relative fluorescence units RFU or relative luminescence units RLU SpectraMax M2 amp SpectraMax M2e Multi mode Plate Readers User Guide 0112 0102 Rev D 2 8 Functional Description 2 8 3 AUTOMIX The Automix function permits automatic linear shaking along the long axis of the microplate at preset intervals thereby mixing of the contents within each well Automix must be selected before beginning a reading The actions associated with the Automix setting depend on the read mode chosen gt Endpoint mode Automix shakes the plate for a definable number of seconds and then reads at all selected wavelengths gt Kinetic mode two types of Automix can be enabled Automix can shake the plate for a definable number of seconds before the initial reading and or for a definable number of seconds before each subsequent reading
35. and SpectraMax M2 make them appropriate for applications within the fields of biochemistry cell biology immunology molecular biology and microbiology Typical applications include ELISA nucleic acid protein enzymatic type homogeneous and heterogeneous assays microbial growth endotoxin testing and pipettor calibration The SpectraMax M2 and SpectraMax M2 also have two secondary modes that can be used for limited development of glow luminescence or time resolved fluorescence assays The performance of these two modes is not comparable to dedicated luminescence or time resolved fluorescence instruments or multimode readers such as the SpectraMax M5 Analyst HT or Analyst GT SpectraMax M2 SpectraMax M2e Multi mode Plate Readers Operator s Manual 0112 0115 Rev D 1 a 2 pu a o a 1 Description OPTICS Mirrored optics focus the light into the sample volume and cutoff filters are used to reduce stray light and minimize background interference The light source is a high powered Xenon flashlamp additional flexibility is provided by allowing a variable number of lamp flashes per read DYNAMIC RANGE The dynamic range of detection is from 10 6 to 10 12 molar fluorescein Variations in measured fluorescence values are virtually eliminated by internal compensation for detector sensitivity photomultiplier tube voltage and sensitivity as well as excitation intensity The photometric rang
36. ce and optical density interchangeably Automix The Automix function determines how often if at all automated shaking of the micro plate is performed during a reading This feature is covered by U S Patent Number 5 112 134 Emission Cutoff Filter A long pass filter used to condition the emission light prior to detection by the PMT In automatic mode the instrument sets the cutoffs automatically based upon the wave length s chosen for reading in manual mode you can choose the filter wavelength man ually Endpoint A single reading made at one or more excitation emission wavelengths Emission Spectral Scan Measures fluorescence or luminescence across a spectrum of wavelengths for emitted light at a fixed excitation wavelength or no excitation in the case of luminescence The default value reported for each well is the wavelength of maximum fluorescence or luminescence SpectraMax M2 amp SpectraMax M2e Multi mode Plate Readers User Guide 0112 0102 Rev D A 8 Glossary Excitation Filter Band pass filter that reduces the amount of extraneous lamp excitation light prior to the excitation monochromator In endpoint reads and emission spectral scans selection of excitation filter is automatic In excitation spectral scans the user has the choice of no excitation filter for smoother scans or auto excitation filter in which case there may be slight glitches in the spectrum at the wavelengths where filter c
37. citation emission maximim 7 maximim o 2 E Emission B reading 8 E 5 wavelength i 0 5 o 2 5 2 o o 500 550 600 650 Wavelength nm Figure 2 3 Optimized excitation and emission reading wavelengths The figure above shows that the best results are often obtained when the excitation and emission wavelengths used for reading are not the same as the wavelengths of the excitation and emission spectra of the fluorophore When the reading wavelengths for excitation and emission are separated a smaller amount of excitation light passes through to the emission monochromator gray area and on to the PMT resulting in a purer emission signal and more accurate data The SpectraMax M2 and SpectraMax M2 allow scanning of both excitation and emission wavelengths using separate tunable monochromators One benefit of being able to scan emission spectra is that you can assess more accurately whether the emission is in fact the expected fluorophore or multiple fluorophores and not one generated by a variety of background sources or by contaminants Another benefit is that you may be able to find excitation and emission wavelengths that avoid interference when interfering fluorescent species are present For this reason it may be desirable to scan emission for both an intermediate concentration of labeled sample as well as the background of unlabeled sample The optimum setting is where the ratio of the sample emission
38. ctraMax M2 error code ranges Error Code Numbers Possible Causes 100 199 Errors possibly caused by unrecognized commands being sent from the computer to the instrument 200 299 Errors probably due to a main board failure or an error in the firmware code Most of these errors require the assistance of Technical Support 300 399 Instrument errors due to either a main board failure or other system failure Most of these errors require the assistance of Technical Support 400 499 Errors caused by a motor motion failure Most of these errors require the assistance of Technical Support 500 599 Errors due to failure or improper initialization of the instru ments non volatile memory NVRAM All of these errors require the assistance of Technical Support Some errors shown in boldface in the following table are considered fatal in that if they are detected during power up the instrument aborts the power up sequence and displays FATAL ERROR on the LCD panel Check the following list to see if there is something that you can do to change the condi tion of the instrument to prevent the fatal error e g closing the cuvette door during the power up sequence prevents errors 111 219 302 and 310 After correcting the problem leave the instrument on for about five minutes turn it off and then back on If you continue to get the fatal error message on power up record the error message nu
39. cular Devices Technical Services group at 1 800 635 5577 elsewhere contact your local representative AA BIOHAZARD lt is your responsibility to decontaminate the instrument as well as any accessories before requesting service by Molecular Devices representatives and before returning the instrument or any components to Molecular Devices Corporation ZA WARNING All maintenance procedures described in this user guide can be safel P 8 y performed by qualified personnel Maintenance not covered in this user guide should be performed only by a Molecular Devices representative ZA WARNING Removal of protective covers that are marked with the High Voltage warning symbol shown below can result in a safety hazard A ZA WARNING Always turn the power switch off and disconnect the power cord from the main power source before performing any maintenance procedure that requires removal of any panel or cover or disassembly of any interior instrument component ZA WARNING Never perform any operation on the instrument in an environment where liquids or potentially damaging gases are present ZA WARNING Risk of electrical shock Refer servicing to qualified personnel AA CAUTION Use of organic solvents such as dichloromethane may cause harm to the optics in the instrument Extreme caution is advised when using organic solvents Always use a plate lid and avoid placing a plate containing these materials in the reading chamber for prolonged periods
40. d constants and plate pre reads all of which are described in the PathCheck section of the SoftMax Pro User Guide PATHCHECK AND INTERFERING SUBSTANCES Any material that absorbs in the 900 nm to 1000 nm spectral region could interfere with PathCheck measurements Fortunately there are few materials that do interfere at the concentrations typically used Turbidity is the most common interference if you can detect any turbidity in your sample you should not use PathCheck Turbidity elevates the 900 nm measurement more than the 1000 nm measurement and causes an erroneously low estimate of pathlength Using Cuvette Reference does not reliably correct for turbidity Samples that are highly colored in the upper visible spectrum may have absorbance extending into the near infrared NIR and can interfere with PathCheck Examples include Lowry assays molybdate based assays and samples containing hemoglobins or porphyrins In general if the sample is distinctly red or purple you should check for interference before using PathCheck To determine possible color interference do the following gt Measure the optical density at 900 nm and 1000 nm both measured with air refer ence gt Subtract the 900 nm value from the 1000 nm value gt Do the same for pure water If the delta OD for the sample differs significantly from the delta OD for water then it is advisable not to use the PathCheck feature Use of Cuvette Reference does not corr
41. e is 0 4 ODs with a resolution of 0 001 OD PATHCHECK SpectraMax M2 and SpectraMax M2 with PathCheck Sensor allow normalization of variable well volumes to 1 cm cuvette readings PathCheck allows for multichannel pipettor validation and for experiment comparison from different days AUTOMIX Using SoftMax Pro the contents of the wells in a microplate can be mixed automatically by linear shaking before each read cycle making it possible to perform kinetic analysis of solid phase enzyme mediated reactions mixing is not critical for liquid phase reactions TEMPERATURE CONTROL Temperature in the microplate chamber is isothermal both at ambient and when the incubator is turned on When the incubator is on the temperature may be controlled from 4 C above ambient to 45 C SUPPORTED PLATES Microplates having 6 12 24 48 96 and 384 wells can be used in the SpectraMax M2 and SpectraMax M2 Top detection is available for fluorescence detection on the SpectraMax M2 while top and bottom reads are possible on the SpectraMax M2 When reading optical density at wavelengths below 340 nm special UV transparent disposable or quartz microplates and cuvettes that allow transmission of the far UV spectra must be used One plate carrier adapter is provided with the instrument The adapter is required for optimum performance with standard 96 well and 384 well format microplates for all top read applications COMPUTER CONTROL SpectraMax M
42. e or cuvette Kinetic and kinetic graphics of microplate and or cuvette Spectral scan 190 1000 nm of microplate and or cuvette Well scan of microplate using absorbance or fluorescence intensity MEASUREMENT TIME CALIBRATION OF F Microplate read time endpoint Standard read 96 wells in 24 seconds single wavelength absorbance 96 wells in 15 seconds single wavelength fluorescence intensity 384 wells in 1 57 minutes single wavelength absorbance 384 wells in 45 seconds single wavelength fluorescence intensity Microplate read time endpoint Standard read with PathCheck 96 wells in 2 07 minutes single wavelength absorbance 384 wells in 7 19 minutes single wavelength absorbance SpectraMax M2 amp SpectraMax M2e Multi mode Plate Readers User Guide 0112 0102 Rev D N n Le O o o D mg o gt D 47 YN 2 E E cb Q N N 48 7 Specifications Microplate read time endpoint Speed read e 96 wells in 18 seconds single wavelength absorbance e 384 wells in 49 seconds single wavelength absorbance SCAN SPEED Cuvette Normal scan 45 K nm min K wavelength interval Cuvette Speed scan 130 K nm min Wavelength repeatability 0 2 nm TEMPERATURE REGULATION Reading chamber Isothermal when temperature regulation is not enabled Range Resolution Accuracy Temp
43. e than 80 nm use the excitation peak wave length value If the excitation and emission wavelengths are less than 80 nm apart use the shortest excitation wavelength that gives 90 maximal emission Follow the plot to the left of the peak until the RFU value falls to approximately 90 of the maximum and then drop a line from the 90 point on the plot to the x axis see Figure 4 1 gt O Lo ES A e 5 SpectraMax M2 amp SpectraMax M2e Multi mode Plate Readers User Guide 0112 0102 Rev D 29 4 Operation RFU at 90 of max A max 90 of max A Wavelength Figure 4 1 Plot of RFU vs wavelength 3 Perform emission scan 1 a In SoftMax Pro set up a second plate section for a fluorescence read spectrum mode Ex Fixed Em Scan with no cutoff filter default and medium PMT b Set the excitation wavelength to the value determined in step 2f above c Set the emission scan to start stop approximately 50 nm below or above the tentative emission value obtained from the literature or existing filter pair Note If the Stokes shift is less than 50 nm then start the emission scan above the excitation wavelength d Set the step increment to 2 3 nm or do a preliminary scan with a 10 nm increment to determine the approximate peak location and then repeat the scan over a narrower wavelength range using a 2 3 nm increment e Perform the scan and view the results as a plot of fluorescence vs emissi
44. ect for the interference with the current calculation scheme in SoftMax Pro Currently Cuvette Reference involves a single automated read at 900 nm and 1000 nm and the automated calculations in SoftMax Pro do not compensate for color or solvent interference However you could correct for such interference by taking two cuvette measurements and SpectraMax M2 SpectraMax M2e Multi mode Plate Readers User Guide 0112 0102 Rev D 2 5 Fluorescence using a different set of calculations For further information contact Molecular Devices Technical Support Organic solvents could interfere with PathCheck if they have absorbance in the region of the NIR water peak Solvents such ethanol and methanol do not absorb in the NIR region so they do not interfere except for causing a decrease in the water absorbance to the extent of their presence in the solution Their passive interference can be avoided by using the Cuvette Reference If however the solvent absorbs between 900 and 1000 nm the interference would be similar to the interference of highly colored samples described previously If you are considering adding an organic solvent other than ethanol or methanol you are advised to run a spectral scan between 900 nm and 1000 nm to determine if the solvent would interfere with PathCheck 2 4 4 MAKING ABSORBANCE MEASUREMENTS NORMALIZED TO A 1 CM PATHLENGTH SoftMax Pro automatically repo
45. erature uniformity at equilibrium Chamber warm up time 4 C above ambient to 45 C when temperature regulation enabled The ambient temperature must be gt 20 C to achieve temperature regu lation at 45 C 0 1 C 1 0 C for microplate and cuvette chamber 0 5 C at 37 C 15 30 minutes measured on air after initiation of temperature regulation Temperature regulation 4 sensors Drift 0 2 C regulated Temperature regulation diagnostics Temperature regulation system is continu ously monitored and updated Evaporation Plate lid required to minimize evaporative cooling Recommended microplate Flat bottom microplates with isolated wells and lid Control Front panel reports cuvette chamber temper ature only temperature for microplate cham ber reported in SoftMax Pro AUTOMIX WITH SOFTMAX PRO SpectraMax M2 amp SpectraMax M2e Multi mode Plate Readers User Guide 0112 0102 Rev D 7 1 SpectraMax M2 and M2 Performance Specifications Plate mixing modes Selectable off once prior to any reading and once prior to and between kinetic readings Plate mixing duration Selectable O to 999 seconds three second default COMPATIBILITY Microplates Standard 6 to 384 well flat bottomed micro plates Polystyrene plates for absorbance wavelengths above 340 nm UV transparent plates for absorbance readings above 220 nm quartz plates
46. f different cutoff filters on a scan of fluorescein where excitation was fixed at 485 nm and emission was scanned from 490 nm to 560 nm buffer blanks are not shown in this plot Table 4 1 following lists default settings for the emission cutoff filters For spectrum mode the default is manual no automatic cutoff Table 4 1 Emission cutoff filter default settings P Automatic Cutoff Selection Endpoint and Kinetic Modes Wavelength nm Emission Wavelength nm 1 None lt 415 2 420 415 434 3 435 435 454 4 455 455 474 5 475 475 494 6 495 495 514 7 515 515 529 8 530 530 549 9 550 550 569 10 570 570 589 11 590 590 609 12 610 610 629 13 630 630 664 14 665 665 694 15 695 695 850 SpectraMax M2 amp SpectraMax M2e Multi mode Plate Readers User Guide 0112 0102 Rev D a s 2 e para 1 gt o gt O 9 5 Maintenance 5 1 TECHNICAL SUPPORT Molecular Devices Corporation is a leading worldwide manufacturer and distributor of analytical instrumentation We are committed to the quality of our products and to fully supporting our customers with the highest possible level of technical service In order to fully benefit from our technical services please complete the registration card and return it to the address printed on the card If you have any problems using your SpectraMax M2 or SpectraMax M25 in the U S contact the Mole
47. han 65 errors in the buffer clear the buffer 110 stray light cuvette door open Cuvette door open while doing a read 111 invalid read settings 200 299 FIRMWARE ERRORS 200 assert failed Firmware error 201 bad error number Firmware error 202 receive queue overflow Caused by external device sending too much data over serial port and ignoring flow control SpectraMax M2 amp SpectraMax M2e Multi mode Plate Readers User Guide 0112 0102 Rev D D a z O E T D n gt 9 O ae 5 e 41 oy E c e le Y 2 2 gt le La E Ko 42 6 Troubleshooting Error Code Error Message Notes 203 serial port parity error Parity bit error detected with incoming serial data 204 serial port overrun error Caused by host computer sending too much data and ignoring the flow control signal 205 serial port framing error 206 cmd generated too much Firmware error output 207 fatal trap Instrument error Instrument locks up 208 RTOS error Firmware error 209 stack overflow Firmware error 210 unknown interrupt Firmware error 300 399 HARD WARE ERRORS 300 thermistor faulty Unable to read a reasonable thermistor value Thermistor faulty or disconnected Main board problem or ambient tempera ture out of range 301 safe temperature limit exceeded A temperature of
48. hanges occur Excitation Spectral Scan Measures fluorescence at a single emission wavelength across a spectrum of excitation wavelengths The default value reported for each well is the excitation wavelength of max imum fluorescence Fluorescence The light emitted by certain substances resulting from the absorption of incident radia tion To measure fluorescence accurately it is necessary to reduce light scatter The gov erning equation for fluorescence is Fluorescence extinction coefficient x concentration x quantum yield x excitation inten sity x pathlength x emission collection efficiency Fluorophore A material that absorbs light energy of a characteristic wavelength undergoes an elec tronic state change and emits light of a longer wavelength Gain The amount of increase in signal power expressed as the ratio of output to input Incubator In SoftMax Pro software Choosing Incubator from the Control menu or clicking the incubator button opens a dialog box allowing you to start or stop temperature regulation and to select an elevated temperature for the microplate chamber Instrument Setup Defines the parameters mode wavelengths automatic mixing run time read interval etc used to read the microplate xipuaddy y Kinetic During kinetic readings data is collected over time with multiple readings made at regu lar intervals The values calculated based on raw kinetic data are V naw Time to V may and
49. ion wavelengths emission cutoff filter readings per well the PMT voltage and the temperature of the reading chamber Another important factor that is independent of the instrument but which affect assays optimization is the Stokes shift When the Stokes shift is very small optimizing the excitation and emission wavelengths and correct cutoff filter choices are very important Excitation and Emission Wavelengths The excitation 250 850 nm and emission SpectraMax M2 360 850 nm SpectraMax M2 250 850 nm wavelengths may be set in 1 nm increments within the range of the instrument A procedure to optimize excitation and emission wavelengths for a given assay is outlined in the next section Emission Cutoff Filter The emission cutoff filters assist in reducing background Sources of background include stray excitation light and native fluorescence of plate materials sample constituents and solvents including water The default setting allows the instrument and SoftMax Pro software to determine which cutoff filter should be used see Table 4 1 for default settings in endpoint and kinetic modes The spectral scan mode default uses no cutoff filter Readings Per Well The number of readings per well may vary between 1 used for a quick estimate and 30 for very precise measurements The default number of readings per well varies with the read mode for fluorescence the default is 6 and for luminescence the default is 30 PMT Vol
50. late drawer without adapter SpectraMax M2 SpectraMax M2e Multi mode Plate Readers Operator s Manual 0112 0115 Rev D 23 3 Installation a 2 pu Ba T 72 i 3 24 SpectraMax M2 SpectraMax M2e Multi mode Plate Readers Operator s Manual 0112 0115 Rev D 4 Operation 4 1 CUVETTE READ QUICK OVERVIEW If you are an experienced user of this instrument the following steps provide a quick reminder of the basic operating procedures required to read a cuvette using a SpectraMax M2 or SpectraMax M2 1 Turn on the power switch located on the back panel The microplate drawer opens automatically 2 Ifyou want to regulate the temperature inside the chamber touch the TEMP on off incubator key to turn the incubator on and bring the chamber to the default temper ature of 37 0 C The microplate drawer closes 3 Ifthe incubator is on the LCD shows the current temperature along with the temper ature set point To change the set point to any setting from ambient 4 to 45 C press the up or down arrow keys 4 Select desired measurement wavelength by pressing the up or down arrow near A 5 Load the prepared cuvette into the chamber being sure that the clear sides are left and right when facing the instrument 6 Press the REF or READ CUVETTE key 4 2 MICROPLATE READ QUICK OVERVIEW If you are an experienced user of this instrument the following steps pro
51. m ber and contact Molecular Devices Technical Support or your local representative for assistance SpectraMax M2 amp SpectraMax M2e Multi mode Plate Readers User Guide 0112 0102 Rev D 6 2 Error Codes and Probable Causes If the instrument is functioning normally when using SoftMax Pro no errors should be in the buffer except error number 100 Table 6 2 Error codes error messages and notes about the errors Error Code Error Message 100 199 UNRECOGNIZED COMMAND ERRO RS SENT FROM THE COMPUTER Notes 100 command not found Command string not recognized 101 invalid argument Command argument not recognized 102 too many arguments Too many arguments after command 103 not enough arguments Missing arguments 104 input line too long Too many characters in the input line 105 command invalid system busy Instrument could not perform the give com mand because it was busy doing another task 106 command invalid mea surement in progress Instrument could not perform command because a measurement was in progress 107 no data to transfer Inputting transfer when there s no data in the buffer 108 data buffer full Too many data sets in the buffer Can be caused by setting up a long kinetic and dis connecting computer or SoftMax Pro is pre empted by another application 109 error buffer overflow More t
52. microplate chamber Do not obstruct the movement of the drawer If you must retrieve a plate after an error condition or power outage and the drawer does not open it is possible to open it manually refer to the chapter Troubleshooting in this guide 1 2 3 MICROPLATES The SpectraMax M2 and SpectraMax M2 can accommodate SBS standard 6 well to 384 well microplates and strip wells When reading optical density at wavelengths below 340 nm special UV transparent disposable or quartz microplates allowing transmission of the deep UV spectra must be used a 2 pu a o a Not all manufacturers microplates are the same with regard to design materials or configuration Temperature uniformity within the microplate may vary depending on the type of microplate used Microplates currently supported by SoftMax Pro for use in this instrument are gt 96 well Standard 96 Costar 96 Greiner Black 96 Bottom Offset 96 Falcon 96 BD Optilux Biocoat 96 BD Fluoroblok MW Insert 96 Corning Half Area 96 MDC HE PS gt 384 well Standard 384 Costar 384 Greiner 384 Falcon 384 Corning 384 MDC HE PS gt 48 Costar gt 24 Costar gt 12 Costar 12 Falcon gt 6 Costar 6 Falcon The SoftMax Pro plate list also includes half area and low volume plates SoftMax Pro can always be used to define a new plate type using the manufacturer s specifications for well size spacing and distance from the plate edge
53. on meets the proper specifications as described in the section Setting Up the Instrument in the chapter Installation in this guide GENERAL MAINTENANCE Keep the drawer closed when the instrument is not in use The drawer can be opened by pressing the button Always close the drawer immediately prior to switching the instrument off CLEANING AA BIOHAZARD Wear gloves during any cleaning procedure that could involve contact with either hazardous or biohazardous materials or fluids ZA WARNING Never clean the inside of the instrument Periodically you should clean the outside surfaces of the instrument using a cloth or sponge that has been dampened with water gt Do not use abrasive cleaners gt If required clean the surfaces using a mild soap solution diluted with water or a glass cleaner and then wipe with a damp cloth or sponge to remove any residue gt Do not spray cleaner directly onto the instrument SpectraMax M2 SpectraMax M2e Multi mode Plate Readers User Guide 0112 0102 Rev D 5 5 Cleaning the Fan Filter If needed clean the microplate drawer using a cloth or sponge that has been dampened with water Should fluids spill in the drawer area when the drawer is out they are directed to a tray at the bottom of the instrument from which they exit to the bench or counter beneath the instrument Wipe up any spills immediately Do not allow excess water or other fluids to drip inside ol s
54. on wave length 4 Choose the emission filter a Select an emission cutoff filter that blocks as much of the residual excitation light as possible without unduly reducing the fluorescence signal The cutoff wavelength choices are 325 420 435 475 495 515 530 550 570 590 610 630 665 or 695 nm The cutoff value should be near the maximum emission wavelength prefer ably between the excitation wavelength and the maximal emission wavelength but at least 10 nm less than the emission wavelength If you have questions about this pro cedure please contact MDC Technical Support and ask to speak to an applications scientist 5 Perform emission scan 2 a In SoftMax Pro set up a third plate section for an emission scan as specified in step 3 above except selecting Manual Cutoff Filter and setting the wavelength to that determined in step 4 c 2 cb a 30 SpectraMax M2 SpectraMax M2e Multi mode Plate Readers User Guide 0112 0102 Rev D 4 6 Optimizing Fluorescence Assays b Perform the scan and view the results as a plot of fluorescence vs emission wave length Note the wavelength giving the maximum emission the optimal emission wavelength c Compare the spectra of the sample containing the fluorophore to the spectra of the buffer blank to get an estimate of the signal to noise ratio If there is significant back ground interference repeat steps 5a and 5b with another choice of cutoff filter
55. onable E error o 505 NVRAM Stage offset error Stage offset data is unreasonable 506 NVRAM Battery Time to replace the NVRAM battery U3 For all other error messages codes not listed here please contact your local Molecular Devices representative for assistance 44 SpectraMax M2 amp SpectraMax M2e Multi mode Plate Readers User Guide 0112 0102 Rev D 7 Specifications 7 1 SPECTRAMAX M2 AND M2 PERFORMANCE SPECIFICATIONS Thermal specifications for microplates used in the SpectraMax M2 and SpectraMax M2 apply to flat bottom microplates with isolated wells All other microplate specifications apply to standard 96 well polystyrene flat bottom microplates Performance specifications for cuvette readings apply only to aqueous solutions having solute molal concentrations less than 0 4 M When pathlength compensation is applied to microplate absorbance measurements agreement with cuvette absorbance measurements for the same solution requires that the solution volume in the microplate well is between 100 pL and 300 pL Technical specifications are subject to change without notice N n Le O o o D mg ie gt 7 ABSORBANCE PHOTOMETRIC PERFORMANCE Wavelength range 200 1000 nm Wavelength selection Monochromator tunable in 1 nm increments Wavelength bandwidth lt 4 0 nm full width half maximum Wavelength accuracy 2 0 nm across wavelength range Waveleng
56. oncentrations normally used PathCheck can also be used with samples containing small amounts of organics or high buffer concentrations by using the Cuvette Reference below 2 4 1 WATER CONSTANT OR CUVETTE REFERENCE The PathCheck measurement is based on the absorbance of water in the near infrared region between 900 nm and 1000 nm If the sample is completely aqueous has no turbidity and has a low salt concentration less than 0 5 M the Water Constant is adequate The Water Constant is determined during manufacture and is stored in the instrument If the sample contains an organic solvent such as ethanol or methanol we recommend using the cuvette reference It is important that the solvent does not absorb in the 900 nm to 1000 nm range to determine whether or not a given solvent would interfere see the discussion of interfering substances below When a non interfering solvent is added to the aqueous sample the water absorbance decreases proportionally to the percentage of organic solvent present For example 5 ethanol decreases the water absorbance by 5 and results in a 5 underestimation of the pathlength You can avoid the error by putting the same water solvent mixture in a cuvette and using the Cuvette Reference To use the Cuvette Reference place into the cuvette port a standard 1 cm cuvette containing the aqueous solvent mixture that is used for the samples in the microplate The cuvette must be in place when you read the mic
57. ou must put a riser 0 8 1 mm on cuvette bottom to match the cuvette window to the beam Gives good qualitative results e spectral scans but quantitative results are impractical because the window is smaller than the beam xipuaddy y 1 Hellma http www hellma worldwide com SpectraMax M2 SpectraMax M2e Multi mode Plate Readers User Guide 0112 0102 Rev D 53 x 3 c D o 2 lt x lt 54 A Appendix A 3 3 STANDARD SEMI MICRO AND MICROCUVETTES HELLMA y dose q f asm gost 10 00 mm aces rc os gt Ea wast 10 10 00mm Standard Semi micro Micro Hellma Cat No 100 104 105 004 104 002 108 002 105 Internal Dimensions 10x 10 4x10 4x10 2x10 2x10 2x10 Fill Volume 4 mL 1 4 mL 600 uL 700 uL 500 uL 300 uL A 3 4 ULTRA MICRO CUVETTES HELLMA A 4 M as a g g a Hellma Cat No 105 200 105 201 105 202 105 210 Optical Pathlength 10 mm 10 mm 10 mm 10 mm Fill Volume 180 uL 120 uL 70 uL 10 uL COMMON WAVELENGTHS FOR FLUORESCENCE AND LUMINESCENCE Values in this table are based on the literature You must scan your fluorochrome of inter est in the SpectraMax M2 or SpectraMax M2 to determine the optimal excitation and emission wavelengths for your application Excitation and emission wavelengths listed by SpectraMax M2 amp SpectraMax M2e Multi mode Plate Readers User Guide 0112 0102 Rev D
58. raMax M2e Multi mode Plate Readers Operator s Manual 0112 0115 Rev D 21 3 Installation 3 Insert the round end of the serial cable into the RS 232 serial port on the back panel of the instrument A Keyspan USB adapter is necessary for a Macintosh computer or a Windows computer without a serial port see Appendix Cables for more informa tion on adapter cables Attach the other end to your computer 4 Insert the female end of the power cord into the power receptacle at the rear of the instrument Connect the male end to a grounded power outlet of the appropriate volt age Molecular Devices recommends that you use a surge protector between the power cord and the grounded power outlet 5 Turn the instrument around so that the control panel now faces you Ensure no cables run beneath the instrument Leave at least three inches between the back of the instru ment and the nearest objects or surfaces to ensure proper ventilation and cooling 6 Remove the tape from the cuvette door 7 Turn on the power to the instrument wait for the microplate drawer to open and remove the tape and protective covering from the drawer subplate 3 3 INSTALLING THE DRAWER ADAPTER A CAUTION Incorrect insertion or removal of the adapter may cause damage to the microplate drawer of the SpectraMax M2 or SpectraMax M2 The corner cutout must be in the lower left corner where the plate pusher is located If you are reading standard 96 well or 384
59. rated with robot partners SpectraMax and SoftMax Pro are the 1 choice of robotic partners and robots Visit the Molecular Devices web site for more information at http www molecu lardevices com pages instruments automa tion html spectramax ENVIRONMENTAL Operating temperature Operating humidity Storage temperature PHYSICAL 15 C to 40 C 0 to 70 non condensing 20 C to 65 C Size h x w x d 8 6 220 mm x 22 8 580 mm x 15 380 mm Weight 35 Ibs 15 75 kg Power consumption lt 250 W Line voltage and frequency 90 250 Vac autoranging 50 60 Hz SpectraMax M2 amp SpectraMax M2e Multi mode Plate Readers User Guide 0112 0102 Rev D A 1 A 1 1 A 1 2 A Appendix CABLES Molecular Devices recommends that you use high quality double shielded cables to con nect your SpectraMax M2 or SpectraMax M2 to the computer Choose cables that meet the following requirements SERIAL INTERFACE CABLE The serial interface cable used to connect the instrument to the computer is a custom cable designed and built by Molecular Devices Please use the cable supplied by Molecular Devices or contact Molecular Devices for specific pin out requirements Male DB8 to Female DB9 custom cable made by Molecular Devices PN 9000 0149 USB ADAPTER iMac G4 and G5 Macintosh computers and many newer Windows computers do not have a serial port You can connect a serial cable
60. re 5 2 The holder inside contains two fuses 36 SpectraMax M2 amp SpectraMax M2e Multi mode Plate Readers User Guide 0112 0102 Rev D 5 6 Changing the Fuses a 2 gt eb 1 gt o gt Y 4 Figure 5 2 The fuse box and holder with fuses removed from instrument 7 Once the fuse box is out you will see a holder inside containing two fuses Pull the fuse holder out of the box see Figure 5 3 Figure 5 3 The fuse holder with fuses removed from the fuse box 8 It is possible that only one of the fuses may have blown However Molecular Devices recommends that you replace both fuses to ensure continued proper operation Pull both fuses out of the holder and discard them 9 Insert new SLOWBLOW rated fuses into the fuse holder Either end of the fuse may be forward 10 Insert the fuse holder into the fuse box making sure that the fuses face toward the right toward the tongue on the cover as you insert it Slide the fuse holder all the way into the box SpectraMax M2 amp SpectraMax M2e Multi mode Plate Readers User Guide 0112 0102 Rev D 37 5 Maintenance 11 Insert the fuse box into the opening in the instrument making sure that the fuses are on the left side toward the power receptacle Press the fuse box into place making sure the cover snaps closed 12 Reconnect the power cord to the instrument and to the wall outlet and reconnect other cables previously disconnected
61. rolled using SoftMax Pro software running on a computer connected to the instrument For a complete description of the modes of operation how to choose instrument settings etc refer to the SoftMax Pro User Guide SpectraMax M2 amp SpectraMax M2e Multi mode Plate Readers User Guide 0112 0102 Rev D 2 8 Functional Description However some functionality is available directly on the instrument without having to use SoftMax Pro gt Temperature control gt Wavelength control gt Fixed point cuvette readings 2 8 1 TEMPERATURE REGULATION The SpectraMax M2 and SpectraMax M2 have been designed to regulate the temperature of the microplate chamber from 4 C above ambient to 45 C Upon power up when the incubator is off the temperature in the microplate chamber is ambient and isothermal Turning on the incubator by pressing the TEMP on off key causes the instrument to begin warming the microplate chamber The temperature set point defaults to 37 0 C at start up Accuracy of the temperature set point is guaranteed only if the set point is at least 4 C above ambient If the temperature set point is lower than the ambient temperature the chamber temperature remains at ambient Temperature regulation is controlled by heaters only and therefore cannot cool the temperature to a setting lower than ambient Additionally the highest setting 45 C can be achieved only if the ambient temperature is greater than 20
62. roplate When you click the Read button in SoftMax Pro the instrument first makes the 900 nm and 1000 nm measurements in the cuvette and then makes the designated measurements in the microplate The cuvette values are stored temporarily and used in the PathCheck calculations for the microplate samples SpectraMax M2 amp SpectraMax M2e Multi mode Plate Readers User Guide 0112 0102 Rev D N y gt 2 2 1 14 o gt O Le 17 is a e gt 11 2 pm da oa Uan e e 2 2 a N 12 2 Principles of Operation 2 4 2 2 4 3 Use of Cuvette Reference with PathCheck is different from a reference reading of a cuvette in a CuvetteSet section by clicking the Ref button in the CuvetteSet section tool bar in SoftMax Pro The cuvette reference used for PathCheck calculations measurements at 900 nm and 1000 nm does not produce data that can be viewed in a CuvetteSet section and is used only with data in microplates not cuvettes BACKGROUND CONSTANT SUBTRACTION AND BLANKING CONSIDERATIONS Raw optical density measurements of microplate samples include both pathlength dependent components sample and solvent and a pathlength independent component OD of microplate material The latter must be eliminated from the PathCheck calculation in order to get obtain PathCheck normalized results There are three ways to accomplish this plate blanks plate backgroun
63. rts absorbance values normalized to a 1 cm pathlength The table below shows results obtained with 75 pL to 300 pL yellow reagent N Well Volume Pathlength Raw Absorbance y sp cv x pL cm Absorbance cm 5 O 75 0 231 0 090 0 390 0 006 1 6 5 100 0 300 0 116 0 387 0 005 1 2 3 e 150 0 446 0 172 0 385 0 003 0 8 o 200 0 596 0 228 0 383 0 002 0 4 ES 250 0 735 0 283 0 384 0 002 0 5 2 300 0 874 0 336 0 384 0 001 0 3 S Absorbance in 1 cm cuvette 0 386 Optical pathlengths and raw absorbance values were directly proportional to well columns After normalization to a 1 cm pathlength all absorbance values regardless of the volume in the wells were within 1 of the value obtained by measuring the same solution in a 1 cm cuvette 2 5 FLUORESCENCE Fluorescent materials absorb light energy of a characteristic wavelength excitation undergo an electronic state change and instantaneously emit light of a longer wavelength emission Most common fluorescent materials have well characterized excitation and emission spectra The figure below shows an example of excitation and emission spectra for a fluorophore The excitation and emission bands are each fairly broad with half bandwidths of approximately 40 nm and the wavelength difference between the SpectraMax M2 amp SpectraMax M2e Multi mode Plate Readers User Guide 0112 0102 Rev D 13 2 Principles of Operation excitation and emission maxima the Stokes shift is typicall
64. splayed wavelength by 1 nm gt Pressing and holding either arrow increments or decrements the displayed wavelength by 10 nm until it is released Ref Key A reading of buffer water or air taken in the cuvette that is used as Ig to calculate Absorbance or Transmittance If no reference reading is taken the instrument uses the Ig values stored in the NVRAM non volatile memory of the instrument bh U 7 o Le e e j Read Cuvette Key Initiates the sample reading of the cuvette T A Key A toggle switch used to display cuvette data as percent transmission or absorbance Drawer key The DRAWER key opens and closes the microplate drawer 1 2 2 THE MICROPLATE DRAWER The microplate drawer is located on the right side of the instrument and slides in and out of the reading chamber An internal latch positions the microplate in the drawer as it closes allowing for better robot integration no springs or clips are used The drawer remains in the reading chamber during read cycles Figure 1 3 The microplate drawer SpectraMax M2 SpectraMax M2e Multi mode Plate Readers Operator s Manual 0112 0115 Rev D 5 1 Description Microplate drawer operation varies depending on the incubator setting gt If the incubator is off the drawer remains open gt If the incubator is on the drawer closes after approximately 10 seconds to assist in maintaining temperature control within the
65. st two options have failed to open the drawer If you are still unable to open the drawer contact your local Molecular Devices represen tative 6 2 ERROR CODES AND PROBABLE CAUSES If a problem occurs during operation that causes an unrecoverable error the instrument will stop and an error code number will be shown in the display on the front panel To correct the problem call your local Molecular Devices representative for assistance 6 2 1 ERROR MESSAGES The LCD displays Fatal Error codes when a situation arises that requires attention Any reading in progress will stop Warning messages do not stop a reading but are logged in the error buffer Warning mes sages indicate a situation that requires attention but is not sufficient to stop or prevent a SpectraMax M2 amp SpectraMax M2e Multi mode Plate Readers User Guide 0112 0102 Rev D 39 oy E c e le Y 2 2 gt le ha E Ko 40 6 Troubleshooting 6 2 2 reading Examples of situations that might cause warning messages are low memory entries being out of range or operations that could result in loss of data These messages are generally self explanatory For assistance regarding warning messages contact your local Molecular Devices represen tative ERROR CODE CLASSIFICATIONS Not all error messages are listed in this user guide The errors are grouped in relationship to possible causes as follows Table 6 1 SpectraMax M2 and Spe
66. tage The voltage of the photomultiplier tube may be set to low for higher concentration samples medium or high for lower concentration samples in all read modes In endpoint and spectrum mode there is an additional setting automatic in which the instrument automatically adjusts the PMT voltage for varying concentrations of sample in the plate Temperature Control The chamber of the SpectraMax M2 and SpectraMax M2 is isothermal at ambient as well as at elevated temperatures The temperature in the reading chamber may be adjusted from 4 C above ambient to 45 C Note that assay optimization requires the use of a computer and SoftMax Pro software SpectraMax M2 amp SpectraMax M2e Multi mode Plate Readers User Guide 0112 0102 Rev D 4 6 Optimizing Fluorescence Assays 4 6 2 USING SPECTRAL SCANNING TO OPTIMIZE EXCITATION AND EMISSION WAVELENGTHS FOR FLUORESCENCE ASSAYS 1 Put 200 pL of sample that includes the fluorophore and 200 pL of a buffer control into separate wells of a microplate 2 Perform an excitation scan a Using SoftMax Pro set up a Plate section for a fluorescence read spectrum mode Em Fixed Ex Scan with no cutoff filter default and medium PMT b Set the emission wavelength based on the tentative value from the literature or from a customary filter set used to measure your fluorophore If the emission wavelength is not known select a tentative emission wavelength about 50 nm greater than the
67. teps listed below to replace the fuses Spare fuses two U S and two metric are shipped with the instrument The U S and metric fuses are identical except for physical size They may be taped to the back of the instrument SpectraMax M2 amp SpectraMax M2e Multi mode Plate Readers User Guide 0112 0102 Rev D 35 5 Maintenance If you no longer have spare fuses you may obtain new ones from Molecular Devices part numbers 4601 0013 for U S 4601 0014 for metric or from a local hardware store Make sure fuses are rated SLOWBLOW U S 4 amp time delay metric 4 amp 5 x 20 mm time delay To change fuses O c cb Ts 1 Switch power to the instrument off and then remove the power cord from the outlet and from the instrument power cord receptacle 2 Remove the computer cable if connected from the back of the instrument 3 Turn the instrument around for easy access to the rear panel 4 On the left hand side of the rear panel viewed from the back is the power switch fuse box and power cord receptacle As shown in the figures below press to the left of the black plastic cover of the fuse box to release it Pull the fuse box cover away from the instrument The fuse box will begin to slide forward 5 Continue gently pulling the fuse box forward until it is free of the instrument Figure 5 1 Prying open the fuse box cover 6 When removed the fuse assembly will appear as shown in Figu
68. ter the lamp is turned off Time resolved fluorescence is used to reduce the amount of back ground noise that interferes with fluorescence The excitation lamp flashes and after it is off the delayed emission is collected for a set period of time before the lamp is flashed again A 9 SYSTEM DIAGRAMS AND DIMENSIONS Dimensions are shown in inches millimeters 2 3 c o 2 o lt x lt _ 8 60 218 44 IN 3 939 100 050 Figure A 2 Front view of SpectraMax M2 58 SpectraMax M2 amp SpectraMax M2e Multi mode Plate Readers User Guide 0112 0102 Rev D A 9 System Diagrams and Dimensions ln A 3 Side view of SpectraMax M2 15 37 390 398 3 465 88 011 2 91 75 438 5 190 442 131 826 11 226 22 50 571 9 Figure A 4 Top view of SpectraMax M2 xipuaddy vy SpectraMax M2 SpectraMax M2e Multi mode Plate Readers User Guide 0112 0102 Rev D 59 A Appendix x 5 o 2 2 lt x lt 60 SpectraMax M2 amp SpectraMax M2e Multi mode Plate Readers User Guide 0112 0102 Rev D J Molecular Devices SALES OFFICES United States Molecular Devices Corp Tel 1 800 635 5577 Fax 1 408 747 3601 Australia Molecular Devices Pty Ltd Tel 61 3 9896 4700 Fax 61 3 8640 0742 Brazil Molecular Devices Brazil Tel 55 11 3616 66
69. th repeatability 0 2 nm Photometric range 0 0 to 4 0 OD Photometric resolution 0 001 OD Photometric accuracy linearity lt 1 0 and 0 006 OD 0 2 0 OD Photometric precision repeatability lt 1 0 and 0 003 OD 0 2 0 OD Stray light lt 0 05 at 230 nm SpectraMax M2 amp SpectraMax M2e Multi mode Plate Readers User Guide 0112 0102 Rev D 45 YN c 2 E E cb Q N N 46 7 Specifications Photometric stabilization Instantaneous Photometric drift None continuous referencing of monochromatic input Calibration Automatic before first kinetic read and before every endpoint reading Optical alignment None required Light source Xenon flash lamp 50 Watts Average lamp lifetime 1 billion flashes Photodetectors Silicon photodiode Endpoint baseline noise cuvette 0 003 OD 190 405 850 nm Endpoint kinetic noise cuvette 0 003 OD 190 405 850 nm gt 0 2 mOD min and lt 0 2 mOD min FLUORESCENCE PHOTOMETRIC PERFORMANCE Detection limit top read microplate SpectraMax M2 and SpectraMax M2 3 0 fmol well in 200 uL FITC 96 wells 15 pM 3 0 fmol well in 75 uL FITC 384 wells 40 pM Detection limit bottom read micro plate SpectraMax M2 only Detection limit cuvette Excitation wavelength range 5 0 fmol well FITC 200 uL in 96 wells 25 pM 5 0 fmol well FITC
70. tly used to delay the fluorescence long enough to measure it after the lamp is turned off To assist with proper collection of data you can also select when to start and end data collection within the limits of the system the minimum is 50 ps and the maximum is 1450 ps in 200 ps steps LUMINESCENCE The SpectraMax M2 and SpectraMax M2 are microplate spectrofluorometers with photomultiplier tube detection Some luminescence applications such as gene reporter assays may require a luminometer with photon counting detection for greater sensitivity such as the SpectraMax M5 Analyst GT or Analyst HT or LMax II In luminescence mode no excitation is necessary as the species being measured emit light naturally For this reason the lamp does not flash so no background interference occurs A dark estimate is done over a dark reference and multiple readings are averaged together into one reading per well You can choose the wavelength where peak emission is expected to occur In addition multiple wavelength choices allow species with multiple components to be differentiated and measured easily In luminescence read mode no emission cutoff filter is used The default setting for luminescence is the zero order position where the grating monochromator acts as a mirror that reflects all light to the PMT detector FUNCTIONAL DESCRIPTION The full power of a SpectraMax M2 and SpectraMax M2 can only be harnessed when the instrument is cont
71. to background emission is at the maximum For more information regarding optimizing excitation and emission wavelengths using the spectral scanning capabilities of the SpectraMax M2 and SpectraMax M25 refer to the section Optimizing Fluorescence Assays of the chapter Operation in this guide SpectraMax M2 amp SpectraMax M2e Multi mode Plate Readers User Guide 0112 0102 Rev D N y F ER pl 14 e gt O Le gt is a e 15 2 pm da oa Uan e e 2 2 a N 16 2 Principles of Operation 2 6 2 7 2 8 TIME RESOLVED FLUORESCENCE Time resolved fluorescence is a secondary mode for the SpectraMax M2 and SpectraMax M2 so performance is not comparable to instruments that specialize in time resolved fluorescence such as the SpectraMax M5 Analyst HT and Analyst GT In normal fluorescence mode readings are taken while the lamp is on The most common limitation to sensitivity in normal fluorescence is excitation energy or background fluorescence that cannot be eliminated from the emission signal Since the lamp is the source of excitation energy turning it off provides the best means of eliminating background excitation Time resolved fluorescence is performed by flashing the excitation lamp and after it is off collecting the delayed emission for a period of time before the lamp is flashed again Lanthanide dyes are frequen
72. tory stored values derived from deionized water Water Constant can be used to normalize the optical density data for microplate wells i 2 pm oa v e 2 E a N PathCheck pathlength correction is accomplished only when using the SoftMax Pro software PathCheck is patented by Molecular Devices and can be performed only on an MDC plate reader The SpectraMax M2 and SpectraMax M2 offer both the Cuvette Reference and the Water Constant methods The actual pathlength d of a solvent is found from the following equation Sample 0D 000 OD og k d cm 10 SpectraMax M2 amp SpectraMax M2e Multi mode Plate Readers User Guide 0112 0102 Rev D 2 4 PathCheck When a Cuvette Reference is used for pathlength correction the value of amp is obtained by taking optical density measurements on the fluid in the cuvette at two wavelengths 1000 and 900 nm k Cuvette OD 000 OD gq When the Water Constant is used for pathlength correction the value of k is obtained from the instrument This constant is saved in the instrument in the factory and may differ slightly from instrument to instrument Once the pathlength d is found the following equation is used for the pathlength correction OD OD sample em d cm PathCheck is applicable to almost all biological pharmaceutical molecules in aqueous solution because they have little or no absorbance between 900 nm and 1000 nm at c
73. vide a quick reminder of the basic operating procedures required to read a microplate using a SpectraMax M2 or SpectraMax M25 1 Turn on the power switch located on the back panel The microplate drawer opens automatically 2 Ifyou want to regulate the temperature inside the chamber touch the TEMP on off incubator key to turn the incubator on and bring the chamber to the default temper ature of 37 0 C The microplate drawer closes 3 Ifthe incubator is on the LCD shows the current temperature along with the temper ature set point To change the set point to any setting from ambient 4 to 45 C press the up or down arrow keys SpectraMax M2 amp SpectraMax M2e Multi mode Plate Readers User Guide 0112 0102 Rev D gt o Lo E e 25 c 2 pa oa ie 26 4 Operation 4 3 4 3 1 4 3 2 4 Select the desired instrument settings read mode type of analysis template etc using SoftMax Pro software on the external computer 5 Ifyou are performing kinetic analysis add substrate at this time 6 Load the prepared microplate into the drawer being sure to match well A1 with the Al mark on upper left hand corner of the drawer 7 Using SoftMax Pro start the reading PREPARING FOR A CUVETTE OR MICROPLATE READING TURN THE INSTRUMENT AND COMPUTER ON The power switch is located on the back panel Press the rocker switch to the ON position
74. y fairly small about 30 nm There is considerable overlap between the excitation and emission spectra gray area when a small Stokes shift is present Excitation Emission maximum maximum Stokes Shift OO Absorption 0 5 Relative Fluorescence 500 550 600 650 Wavelength nm Figure 2 2 Excitation and emission spectra Because the intensity of the excitation light is usually many tens of thousands of times greater than that of the emitted light some type of spectral separation is necessary to reduce the interference of the excitation light with detection of the emitted light The SpectraMax M2 and SpectraMax M2 incorporate many features designed to restrict interference from reflected excitation light Among these features is a set of long pass emission cutoff filters that can be set automatically by the instrument or manually by the user If the Stokes shift is small it may be advisable to choose an excitation wavelength that is as far away from the emission maximum as possible while still being capable of stimulating the fluorophore so that less of the excited light overlaps the emission spectrum allowing better selection and quantitation of the emitted light i 2 pm oa v e 12 2 E a N 14 SpectraMax M2 amp SpectraMax M2e Multi mode Plate Readers User Guide 0112 0102 Rev D 2 5 Fluorescence Excitation reading wavelength Fluorophore s Fluorophore s a ex

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Spectramax® m2/m2 user guide