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        A Brief User`s Manual of The Scanning Tunneling Microscope
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1.     16    image  Press OK and finally choose the location and the name of the files  For  example  if the 10  to 14  buffers are chosen  the first serial number is 1 and the  file name is    test     the resulting files will be    test 1        test 2        test 3        test 4    and     test 5        To retract the tip  set the    Steps Per Millisecond    in the    InchWorm Control Panel     to a negative value  typically  400  and press    Run     Watch the STM module  through the glass on the vacuum chamber  A distance of 5mm between the tip and    the sample is enough  After that  press    Stop        Turn off the    BACK        CENTER    and    FRONT    switches on the green panel  Fig   3 2 b       Turn off the    LINE    and    ON OFF    switches on the light grey panel  Fig  3 2 c       Turn off the power under the computer desk  Fig  3 2 d       17  Venting the vacuum chamber  1  Close the gate valve  turning clockwise  Fig 2 1 f       2  Turn off the ion pump  controlled by the upper dark grey panel  Fig  2 5 a     by  pressing the yellow    HV ENABLE    button again        Figure 4 1 Venting the chamber with the help of nitrogen     3  Bring the nitrogen can  Fig  2 6 a   and wrap the plastic tube together with the  right angle valve  Fig 2 1 d   using a plastic bag  Turn on the flow of nitrogen   See Fig  4 1     4  Slowly open the right angle valve using the torque  Fig  2 3 b    After about 10  minutes  fully open it     5  After about 20 minutes  close the ri
2.  the stage using the clamp       To demount the sample and the tip  follow the reverse steps  Acetone helps to  remove the silver paste  Be careful to watch where the metal piece lands     Preparing vacuum               C         Figure 2 1 Schematic of the UHV STM system  composed of the  a  vacuum chamber   b  Al  slab   c  pneumatically elevated legs   d  roughing valve   e  ion pump   f  gate valve   g   STM module   h  STM vacuum flange  and  i  STM module holder     1  Wear a pair of gloves   2  Change the gasket on the flange  h in Fig  2 1    3  Gently lift the STM module  g in Fig  2 1  and move it inside the vacuum    chamber  h in Fig  2 1    May need somebody else to secure the position of the  STM module using a few screws      Mechanical Pump           7 JP    Valve  operated    au Valve  operat       using the torque  4       Figure 2 3  a  The roughing valve on the vacuum chamber   b  the torque and  c  the O ring     4  Put all the screws on the flange  h in Fig  2 1  and tighten them in a diagonal  order     5  Connect the hose of the mechanical turbo pumps  on the pump rack  Fig  2 2    to  the valve on the vacuum chamber  d in Fig  2 1  using an O ring  Fig  2 3 c    between them  Tighten the connection using a clamp  Fig  2 3 a       6  Get rid of the gloves     7  Start the mechanical pump by turning on the switch on the outlet fixed on the  pump rack     8  Open the valve  Fig  2 3 a   using the torque  Fig  2 3 b          Figure 2 4  a  The vacuum gaug
3. A Brief User   s Manual of    The Scanning Tunneling Microscope    Prepared by Min Wu based on some materials from Paul Morrow    thesis  Text was commented by David Hunt  July 30  2008    Preparing the tip and the sample    motor    a housing motor  wiring    ring bm fg shaft       Figure 1 2  a  The box containing the tips   b  the tip mount  without a tip       c  fixing the tip mount into the mount holder and  d  mounting the sample       Pick up a new tip in the box  Fig  1 2 a   with a pair of tweezers  Fix the tip into  the tip mount  Fig  1 2 b   using silver paste  Heat up the silver paste under the  heat lamp for about one hour       Fix the tip mount into the mount holder with the help of a small metal piece  Fig   1 2  c    The metal piece should be on the flat side of the tip mount       There are two ways of mounting the sample  One way is to glue the sample on the  sample holder using silver paste  Before doing this  you have to glue a conductive  wire on the surface of the sample using silver paste  After heating the silver paste  under the heat lamp  fix the sample holder on the stage using a screw  Finally  connect the clamp  leads to the circuit  and the wire from the sample       The other way is designed for those samples which cannot be heated up  Put the  sample into the slot on the sample holder and tighten the screws  Fig  1 2 d     Since the sample holder is in contact with the surface of the sample  all you have  to do is to fix the sample holder on
4. V high voltage of  the inchworm may be conducted by the metal table and hurt people     While the tip is approaching  open the    STM Control Panel     Fig  3 3 b   by  choosing    Hardware      gt     STM Control Panel    in the menu     Set the    Tip Velocity     typically 5nm s      Tip Bias     typically 0 5V for good  conducting surface and 1 5V for oxide surface  and    Tunneling Current Set      typically 0 5nA   Then press the button    Write    to input these values into the  system  STM will be operating in constant current mode unless the button     Constant Height Mode    is pressed     When the tip finishes approaching  the    Position    value on the    InchWorm Control  Panel    will stop changing  Press the button    Read    on the    STM Control Panel    to  refresh the parameters  The    Tunneling Current    value should be close to the     Tunneling Current Set    value     12       Figure 3 4 The    Square Centered On    window     15  Choose    STM      gt     Set Scan      gt     Square Centered On    in the menu  In the opened  window  Fig  3 4   set the x and y coordinates of the    Center     in the unit of nm    the size of each    Side    of the square  in the unit of nm  typically a few hundred    the    X Size    and the    Y Size     number of pixels in the image  typically 128  256  and so on  and finally the    Gate Time     related to the scan speed  typically Smsec  for a general scan   Press    OK    to finish the setting     13       Figur
5. e 3 5 The    STM Buffer Scan    window     16  Choose    STM      gt     Buffer Scan    in the menu  Fig  3 5  to start scanning and save  the image into the buffer of the computer memory  After the previous step  most of  the parameter should be ready   You can also choose an area from an existing  image  See 20   Switch from    normal    to    retrace    if you need to generate two  separate images corresponding to the two directions in which the tip scans   Choose the    Starting Corner    between one of the four corners depending on the  position of the tip right now  Press    OK        17     18     14       Figure 3 6 Choosing places to score the images     Then you will have to choose the places  buffers  where you want to store your  images  Fig  3 6   To do this  click on one of the empty lines in the    Image Sorter     window  opened by choosing    View      gt     Image Sorter    in the menu  and press     OK     There will be two images  if it is in the    retrace    mode  and they will be the  results of the scanning in two opposite directions  Be careful not to choose  previously assigned buffer locations for the images to be scanned  as the program  will error and all data that has not been saved will be lost     The scanning begins  The tip will first move to the    Starting Corner     in a speed  controlled by the    Tip Velocity    in the    STM Control Panel     and you will see the     Tip X    and    Tip Y    values in the    STM Control Panel    changin
6. e and  b  the black panel controlling the turbo pump     9  When the vacuum level reaches about 100 mTorr  read from the gauge shown in  Fig  2 4 a    open the turbo pump by pressing the start button on the black panel   Fig  2 4 b   on the pump rack  Fig  2 4 b       10  When the    NORMAL OPERATION    light on the black panel  Fig  2 4 b   is on   leave the turbo pump on overnight     s       Rate of Rise    DIGITEL 500     lon Pump System Controller    yrr  P a i                      AKIN ELMER  Baas art  f GAUGE  gt  2 4  ar p    BAYARD ALPERT SDR _  0   m SP 3  aR On Tust   _ a a ae dia 3      EXT  RANGE WULTIPLIER PC   wr      7    Een   ye    a   BOGS BO    DIGITAL GAUGE CONTROL IK           TY  SUEL NAT IOR PNTE       Figure 2 5  a The ion pump panel   b the ion vacuum gauge panel and     c  the sublimation pump panel     11  At the same time  turn on the ion vacuum gauge using the lower dark grey panel   Fig  2 5 b     Turn the knob on the left from    OFF    to    UHV     choose between  gauges 1   2 using the    1    and    2    button on the right  and finally press the    I T     button to turn on the gauge      12  At the same time  use the sublimation pump  controlled by the light grey panel   Fig  2 5 c   to help the main pumps   Switch from    OFF    to    ON    and turn the  knob clockwise until it reaches about 40A on the meter  Watch the reading on the  ion gauge  It may rise at the beginning  and then start to decrease and finally    stabilize  Turn off t
7. e piezoelectric actuators of the inchworm      6  Turn the    Z OFFSET    knob on the blue panel  Fig  3 2 a   counter clockwise to  the limit     7  Sometimes keeping the system on for a few hours before the measurement helps  to improve the quality of the STM imaging        Figure 3 3 Interface of the STM software     8  In the computer software  open the    InchWorm Control Panel     Fig  3 3 a   by  choosing    Hardware      gt     InchWorm Control Panel    in the menu     9  Set the    Steps Per Millisecond    to a positive value  typically 400  for retracting  tips  or 200 for approaching tips    set the    Current Threshold     typically between  InA and 3nA   and start approaching the tip towards the sample by pressing the    10     11     12     13     14     11    button    Run     The approaching will automatically stop when the tunneling current  reaches the current threshold  However  it 1s good to pay closer attention to the  inchworm behavior as the tip approaches  in case there is a bad connection and it  does not stop automatically  If the button    Step    is pressed  the tip will move by  only one step     Turn the    Z OFFSET    knob on the blue panel  Fig  3 2 a   clockwise until the    Z  AMPL     Reading on the top reaches 0     From this moment on  do not touch anything on the isolation table  The distance  between the tip and the sample maybe disturbed by this  Besides  if the system is  not operating in the vacuum chamber  i e  on the table   the 500
8. g     15       19     20     21     22     23     Figure 3 7 The image window     When they stop changing  double click on the place you have chosen in the     Image Sorter    to see the image  Fig  3 7   The software has some problems so the  image does not automatically refresh while scanning  Press    Auto I    or    Auto X Y     on the bottom to help refreshing     The     2    button zooms out the image by twice while the     2    button zooms in the  image by twice  You can also right click on the image  drag the cursor to the  upper right to select an area and right click again to magnify the area  The    auto I     button adjusts the intensity of the image to achieve best contrast  The    auto XY     button adjusts the zooming of the image to fit the window size     Choose    Experiment   gt  Point selector    in the menu to open the    Point selector     window  Left click on any points on the image and the three coordinates of that  point will be displayed in the    Point selector    window     Change the center position and scan size to get other images  Adjusting the  parameters such as gate time  tip bias and tunneling current will also help to  improve the quality of the images    To save the buffer images into files  choose    Experiment      gt     Save      gt     Multiple  Buffers     In the opened window  choose the starting and ending numbers of the  buffers you want to save  Press OK and then enter the serial number of the first    24     25     26     Di
9. ght angle valve and turn off the nitrogen   Remove the plastic bag     6  Remove the screws on the flange  Fig  2 1 h   and take the STM module out of  the chamber  Slowly put it down on the STM module holder  Fig  2 1 4      7  Wrap the open flange with a piece of aluminum foil     
10. he sublimation pump before the reading start to increase  again      13  Next morning  when the reading on the ion gauge reaches  10   Torr  start the ion  pump  controlled by the upper dark grey panel  Fig  2 5 a     by pressing the red     POWER    button and then the yellow    HV ENABLE    button  Switch the reading  between voltage  current and pressure  different from the chamber pressure and  usually one order of magnitude higher  by pressing the    VOLTS        CURR    and     PRESS    buttons     14  Close the valve  d in Fig  2 3 a   on the vacuum chamber using the torque  Fig   2 3 b       15  Monitor the reading on the ion gauge to make sure it is decreasing  If not  open the  valve again and wait for another hour     S  D       Figure 2 6  a The nitrogen and  b the turbo pump  showing the venting valve      16  Bring the nitrogen  Fig  2 6 a   and connect the plastic tube to the venting valve   shown in Fig  2 6 b   on the turbo pump  Slightly open the flow of nitrogen     17  Stop the turbo pump by pressing the stop button on the black panel  Fig  2 4 b    on the pump rack  Open the venting valve  shown in Fig  2 6 b   on the turbo    pump     18  When the vacuum level reaches about 100 mTorr  stop the mechanical pump by  turning off the switch on the outlet fixed on the pump rack     19  Disconnect the hose of the mechanical turbo pumps  on the pump rack  from the    20     21    22     valve on the vacuum chamber  d in Fig  2 1    Again  use the sublimation pum
11. p to help the main pump     Turn off the ion gauge by pressing the    I T    button on the lower dark grey panel   Fig  2 5 b    Because of the heating effect  the high vacuum chamber requires a  few hours to reach equilibrium  necessary for STM  after the ion gauge is turned  off  Monitor the change of the vacuum level by the pressure reading on the upper  dark grey panel  Fig  2 5 a    usually one order of magnitude higher than the  vacuum level in the chamber      After a few hours  when the pressure reading on the upper dark grey panel  Fig   2 5 a   reaches  10    Torr  the actual vacuum level should be  10   Torr  Start the  STM measurement with the ion pump on     STM Imaging    l        Figure 3 1 Logging in the Linux system     Start the computer on the left of the screen  Choose Linux system  Login with  username    Paul    and password    123456     Enter the command    startx    to start the  graphic interface   Fig  3 1        lL Ea  MODEL 205A20R        High Voltage Power Supply       Figure 3 2 Three panels controlling the STM module     10    2  Double click on    Paul   s Home    at the upper left of the desktop  Enter the folder     Apps  copy  and execute the program    DataAcq        3  Turn on the power under the computer desk  Fig  3 2 d     4  Turn on the    LINE    and    ON OFF    switches on the light grey panel  Fig  3 2 c       5  Turn on the    BACK        CENTER    and    FRONT    switches on the green panel  Fig   3 2 b     They control the thre
    
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