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1.  and file structure for the data and click on   Apply   Store your data on magic site Ico cl in   data whatever directory you created    If you type a path that does not exist the directory will be created     3 3  Offsetting to the center of the CCD  revised April 2008     With MagIC II  both the SITe and the e2v are now physically offset from the optical axis   Thus  each time you move to a new object you must offset to the center of your chosen CCD   This 1s currently handled using the iraf script    tomagic     To run this script  first launch an iraf  window using the Big Red Button on the observing computer  Then load the magic tools   ecl gt  magic    Edit the parameter file to indicate which CCD you are using   ecl gt  epar tomagic    Set    ccdname    to    e2v    or    site     no quotes   Select    yes    to send offsets to the telescope  control system  TCS  and    no    to performing a coordinated offset  Type     q    to exit     Run the script any time you move to a new target   ecl gt  tomagic    The magnitudes of the offsets to the two CCDs are constant and have been set in     tomagic    to be  50  5  for the SITe and   92 6  for the e2v  note that the SITe is in the opposite  direction from the center of the e2v   These values are given in arcseconds along the detector  axes  and the corresponding values in cardinal directions depend on the rotator angle  For  example  for the e2v in EQU 0 0  an object to the south will be offset 92    W and ON  while for  
2.  between the  magic site computer and llama or burro  use the MAGIC shortcut inside Transmit  No password  is required  You should copy your data over to  Data_Burro or  Data_Llama  where it can be  stored during your run   A useful feature for keeping the Data_Burro directory up to date during  the night is the    Synchronize    button in Transmit   The observer machines have DVD drives  that you can use to create a copy of your data for transport home     Start LOIS    Before starting the software  confirm with the telescope operator that the CCD electronics  for either the SITe or the e2v have been powered on and that the fibers for that CCD are  connected to the PCI card on magic site lco cl   This should be done as part of the instrument  setup   From an observer workstation  generate an xterm window  Then run the startup script    xterm gt  magic    There will be some diagnostic messages indicating that old files have been cleaned up  The  startup script will configure the required environment variables and path names  start the default  display tool  ds9   kill any previous LOIS or ds9 processes  and start the main LOIS program     The display tool window  ds9  will appear on the screen first  followed by the  LOIS  system console   Figure 1   The LOIS system console is divided into two windows     a command  window on the left and a log window on the right       LOIS System Console    Lowell Observatory Hel  Instrumentation System   p    System Status  LOIS 3 LOIS Ver
3.  temperature of    120C     The dewar is mounted to a dual filter wheel which contains 18 positions for 4 inch square  filters  so that 16 filters can be mounted at one time  there is an open position in each wheel    Both the SITe and the e2v share the same filters  The standard mounted filters are the Harris B   V  R  I and Sloan u  g   r   i   z as well as a custom VR filter     Both CCDs are run using the Lowell Observatory Instrumentation System  LOIS   Only  one CCD can be operated at a time  and switching between them requires physically swapping  the optical fibers on the instrument computer and the shutter cable to the instrument power  supplies  Full instructions on how to switch between them are given in the Mountain Support  Manual  Only an instrument specialist should switch between the SITe and the e2v  this should  not be attempted by the observer     Table 1  Standard Filters    Filter Central     A  Passband Throughput     FWHM  A  Mag for 1 e  sec Extinction coefficient  Harris B 4303 1045 MAR 0 21  Harris V 5430 971 27 17 0 12  Harris R 6393 1524 27 42 0 10  Harris   8372 2102 26 79 0 04  VR    6100 836  Sloan u  3522   634   25 09 0 49  Sloan g  4803   1409   27 51 0 09  Sloan r  6254   1388   27 44 0 16  Sloan i 7668   1535   21 1  0 04  Sloan z  9114 1409 26 21 0 04        Measurements are based on engineering observations taken on 2004 March 8   e custom filter for KBO observations  see    122        Jewitt  D   Luu J    amp  Chen J  1996 Astron  J   11
4. 1 pos 5   go frame object nexp 2 etime 5  log 3  z filter has finished   filter wheel 1 pos 0   filter wheel 0 pos 2   go frame object nexp 2 etime 5  log 3  V filter has finished   filter wheel 0 pos 3   go frame object nexp 2 etime 5  log 3  R filter has finished   log 3  stdstar has finished          Table 7  Detailed description of LOIS  stdstar  Script    Script line   proc stdstar        filter wheel 0 pos 0   filter wheel 1 pos l   go frame object nexp 2 etime 25  log 3  u filter has finished   filter wheel 1 pos 2   go frame object nexp 2 etime 10  log 3  g filter has finished   filter wheel l pos 3   go frame object nexp 2 etime 5  log 3  r filter has finished   filter wheel 1 pos 4   go frame object nexp 2 etime 5  log 3  i filter has finished   filter wheel 1 pos 5    MagIC Manual LCO 30 doc    Explanation of command   Define procedure name  open script   Move top filter wheel to OPEN position   Move bottom filter wheel to Sloan u  filter position  Execute an object frame  2 exposures  25 seconds each  Write to LOIS log screen  u filter set has finished  Move bottom filter wheel to Sloan g  filter position  Execute an object frame  2 exposures  10 seconds each  Write to the LOIS log screen  g filter set has finished  Move bottom filter wheel to Sloan r  filter position  Execute an object frame  2 exposures  5 seconds each  Write to the LOIS log screen  r filter set has finished  Move bottom filter wheel to Sloan 1  filter position   an object frame  2 exposures  5 
5. 2           Fukugita  M   Ichikawa  T   Gunn  J  E   Doi  M   Shimasaku  K    amp  Schneider  D  P  1996  AJ     111  1748    MagIC Manual LCO 30 doc    2008 05 14 1 09    2  THE SITE AND E2V CCDS    2 1  Overview of the Sile    At the   11 focus of Magellan  the 2k x 2k SITe CCD has a plate scale of 0 069 arc  seconds pixel  the full field is 2 36 arc minutes square  The read noise in the four quadrants lies  in the range 4 5 6 2 electrons  with gains in the range 1 90 2 04 e  ADU  Table 2 gives the  approximate readout times based on binning and amplifier settings  Note  there may be problems  with the binning modes     Table 2  SITe Readout Time Estimates    Binning Single Amp  sec  Quad Amp  sec   1x1 73 23  2x2 24 8  4x4 11    2 2  Overview of the e2v    At the   11 focus of Magellan  the Ik x Ik SITe CCD has a plate scale of 0 037 arc  seconds pixel  the full field is 40 arc seconds square  The read noise in the left and right  amplifiers is 6 0 6 5 electrons  with gains in the range 2 4 2 6 e  ADU  Table 3 gives the  approximate readout times based on binning and amplifier settings  Note  there may be problems  with the binning modes     The e2v is not currently commissioned for general use   Table 3  e2v Readout Time Estimates    Binning Dual Amp  sec   Ix1 5    3  CONTROL SOFTWARE  LOIS     3 1  Overview    Data acquisition for MagIC II is carried out using version 4 of the Lowell Observatory  Instrumentation System  LOIS   LOIS 4 runs on a Sun computer  magic site l
6. 3  r filter position 3 has finished   offset delta ra 10 delta dec 0 delta rot 0  go frame object nexp 1 etime 60   log 3  r filter position 4 has finished   log 3  dither has finished        Example  3  dither2filter    The following script sets the amplifier to single readout mode then sets the filter wheel   takes an exposure  executes a coordinated offset and takes another exposure  changes the filter   takes an exposure  executes a coordinated offset  back to the original position  and repeats the  process 3 times     proc dither2filter   nexp 3        set amplifier amp D  log 3  set amplifier to single amp D     MagIC Manual LCO 30 doc 2008 05 14 1 09    17    for  set i 0   Si  lt  Snexp   incr i     filter wheel 0 pos 0  filter wheel 1 pos 3  go frame object nexp 1 etime 60  log 3  r filter position 1 has finished   offset delta ra  10 delta dec  10 delta rot 0  go frame object nexp 1 etime 60  log 3  r filter position 2 has finished   filter wheel l pos 4  go frame object nexp l etime 60  log 3  1 filter position 2 has finished   offset delta ra 10 delta dec 10 delta rot 0  go frame object nexp 1 etime 60  log 3  1 filter position 1 has finished   log 3  dither2filter has finished        4 3  Known problems and shortcomings    Aborting exposures and scripts    This can be done only when neither the telescope nor the filter wheel is moving  It is  safer to abort a script when the process bar on the camera module is blue  indicating that the  camera is either exposing 
7. Coord Move  button opens a pop up window which is used to execute a   coordinated offset      moving the telescope and moving the guiders so as to keep the guiders  tracking the guide  and wavefront stars  The  Rel Move  button offsets the telescope without  moving the guiders  Make sure the telescope is not guiding before using this button             00 X Magellan Telescope Control    wote   ng    16 51 05 535 2000 00   06 16 00 4 2005 04 20 07 57 35    1 7 09 59     01000  Unknown Unknown  0 00 0 00 0       Coord Hove Rel  Hove    Figure 13  Magellan Telescope Control     Table 5  FITS header information from TCS    Header Keyword Definition  TELRA Right Ascension of the telescope pointing  TELDEC Declination of the telescope pointing  EQUINOX Equinox of TELRA and TELDEC  AIRMASS Airmass  TELFOCUS Telescope focus readout    3 5  Shutdown    Normally  shutdown will be handled by an instrument specialist at the end of your run   Should you want the shut down the system  for example  if LOIS has a serious error as discussed  in   4 3   first home the filter wheel  this prevents the filters from being exposed to unnecessary    MagIC Manual LCO 30 doc 2008 05 14 1 09    13    dust when not in use   Then hit the  Exit  button on the    LOIS Console Window     A dialog box   Figure 14  will be displayed to verify your request     x Exit Lois     Do You Really Want  To Exit        Figure 14  Dialog box confirming desire to exit LOIS     Remember to REMOVE your data from the host c
8. GENERAL USER MANUAL FOR MAGIC II    General User Mantial 1or  Masi acte aci s   tao ANAN NN AN NANA 1  Ms  Modi Ka a VA AA 2   Z de sil amie 2 CNCD  Sma AN NAN NN NN NA 3   Zils  OVEN W OD ME SE ma ANA AKA 3  Dds ONEVIEW OL UGE AN sumei donarea deal AG ANGAL nada nna D GA need 3  De ac OHiroL SOL wate  ON kaaa a a aa oa Naa a aa N 3  Sul  ACEL NE Na AA AN illa Sl nl Ss a al pila dle ei S   3  Ic UA OUI  a otecee etait alae otel INUNA NAGANA UN AALAGA 4  3 3  Offsetting to the center of the CCD  revised April 2008           0 7 700002000aaasssaasssnassssaaass 6  Se    RCC Ol CM Al Academie AA Sai ae AA 7  Sal  ELCs sae nada arene NANG encase NAAN DAA AA ANA 12  da  OPE GALLO Meal Ue aaa ca eta E anal tata alai d td at i A 13  Ad  ROlatorOtisets for Catalog TICS isa cs atei aaa aa alte aa 2 d a i d a d a da 13  Be EOIS SOLID AA taca 13  4 3  Known problems and shortcomings           110101   a 17  a AONO AA AN 18   gt     Amper definitions  106 the  SITE aaa AA 18  dala MOCO NAA NA ON AN 18  3 2     Ouadeanipilier trae Or Sani ANONG NANA NANANA  18  5 3   D  akamphter trame Or Sant ANON  a AA ANA to da 19    MagIC Manual LCO 30 doc 2008 05 14 1 09    1  INTRODUCTION TO MAGIC II    The Raymond and Beverly Sackler Magellan Instant Camera  MagIC II  hosts two CCDs  within the same dewar  a 2k x 2k SITe CCD and a 1k x 1k e2v CCD  NOTE  The e2v frame   transfer CCD that has not yet been commissioned for general use  The dewar is continuously  cooled by a CryoTiger to hold a detector
9. Module      an    Instrument Module     and a    Telescope Control Module     Information regarding what is  being loaded and what else is occurring can be found in the LOIS Console window log screen     Set up data storage on magic site lco cl    In the  LOIS System Console   click the  Storage  button  The Storage window  see  Figure 3  will allow you to choose the directory on magic site lco cl to save your data in  If this  directory does not exist  it will be created  it should be a directory only one level below  data   You can also set the root file name and exposure start number  Note that if you restart LOIS  the  file number will skip a number from the last exposure you took in order to indicate the restart   and avoid overwriting data in the event of a crash      The disk space on the instrument computer 1s recycled after each run  so you will want to  copy the files to a directory on the observer workstation and to removable media that you can  take with you when you leave  If you need help in doing this  ask the instrument specialist     MagIC Manual LCO 30 doc 2008 05 14 1 09      store  Root File Name  test    Extension Number     Add the  fits extension    o On Off  Auto Store Images  o On Off    Storage Path Selection    test 012 fits  test 013 fits  test 014 fits  test 015 fits  test 016 fits  test 017 fits  test 018 fits  test 019 fits  test  020 fits  test  021  fits  test fits    Storage Path   data 2007 aug23    Figure 3  In this window  set the pathname
10. POSITION  To home the filter wheels  click on the   Home Wheels  button  Please home the filter wheels at the end of the night to keep the  filters from being exposed to unnecessary dust          A O X  MagIC Instrument Control  tO ti t2 t3 t4 t5 t6 t7 18  Magic t0   Magic B   Magic V   MagIC_R   Magic     MaglC VR  Cont7130   HAB563   Pinhole    b0 bi b2 b3 b4 b5 b6 b7 b      MagIC_bO  MagIC_u    Magic g   Magic  r   Magic i    Magic z    Cont3388   Cont5260   OIlI5S007    Home Wheels _ Reinitialize   mee  Status   Bposition 3     Figure 12  MagIC Filter Wheel Control after selection of a filter  The current filters are in  green  Be sure one of these is OPEN  MagIC_t0 or MagIC_b0         MagIC Manual LCO 30 doc 2008 05 14 1 09    12    Telescope control module    The    Magellan Telescope Control Module    provides a communication link to the  Magellan TCS  Whenever you take an exposure  either via Test or Go   the TCS module will  automatically be updated at the beginning of the exposure and the information in Table 5 will be  included in the FITS header  The information in the window is NOT a real time display of the  TCS information  To get current information  you can click on the    Update    button  Since the  FITS header is written after the exposure is over  you should not try to update the telescope  module after beginning an exposure  Ii you do  the most recent update information will be  written to the header instead of the original exposure information     The  
11. al LCO 30 doc 2008 05 14 1 09    11    200 X  MagIC Instrument Control  tO ti t2 t3 t4 t5 t6 t7 15  Magic t0  Magic B   Maglc V   MaglC R   Magic     MaglC VR  Cont7130   HA6563   Pinhole    b0 bi b2 b3 b4 b5 b6 b7 b      Magic  bo MagIC_u    Magic g    Magic r    Magic_i   Magic z    Cont3388   Cont5260   01113007      Home Wheels   Reinitialize    mee  Status  Home    Figure 10  MagIC Filter Wheel Control after initialization     The current filter on the wheels will be green  To move the filter wheels  click on the  desired filter name  During movement to another filter position  the previous filter on the wheels  is yellow and the chosen filter on the wheels will be red  Figure 11      a AeA X  MagIC Instrument Control  10 ti t2 t3 t4 t5 t6 t7 18  Magic  10  Magic  B   MagIC_V   Magic  R   Magic     MagIC_VR  Cont7130  HA6563   Pinhole    b0 bi b2 b3 b4 b5 bb b7 b      Magic  bO  MagiC_u    Magic g  Magic r   MagIC i   Magic z    Cont3388   Cont5260   01115007    Home Wheels Reinitialize   wheel Status   Bottom Moving    Figure 11  MagIC Filter Wheel Control while moving to a new filter  Yellow indicates the  filter that the wheel is moving from  red the filter the wheel is moving to     When the filter is in position it will be colored green  Figure 12   Only one filter from  each wheel can be selected at any one time  and one of those filters should be in the OPEN  position  MagIC t0 or MagIC b0   BE SURE THAT THE WHEEL NOT CONTAINING THE  DESIRED FILTER IS IN THE OPEN 
12. ase them from  home observer  Some example scripts are located in   home observer SCRIPTS  At important caveat for scripts is that THEY WORK ONLY FOR  THE QUAD AMP  1x1 BINNING MODE FOR THE SITE  Scripts must first be loaded and  then run  Both tasks are executed by commands entered in the LOIS system console command  window  To load a procedure in the command window  type     LOIS  source script_file_name  To run a script  in the command window type   LOIS  procedure_name    Scripts can be aborted using the red  Abort current script  button on the LOIS system  console  Table 6 describes the command line information necessary in scripts  If a value is not    MagIC Manual LCO 30 doc 2008 05 14 1 09    14    specified it is assumed to be zero in the case of a floating point input  For example  using  delta rot  0 means that the rotation does not change from whatever it was defined as  but it 1s not  necessary to specify this in order to keep the same orientation     Table 6  Commands for LOIS Scripts    Definitions and Notes  filter wheel Top or bottom filter wheel    Filter position on the wheel    Command  starts an exposure   followed by frame xx  bias  dark  object Type of frame    Number of exposures  Exposure duration  seconds     set amplifier Command to set amplifiers to use   followed by amp xx    A B C D AB CD ALL   Amplifiers to use  case sensitive    offset Command to set telescope offset   followed by delta_ra  lt float gt   delta_dec  lt float gt      delta_rot  l
13. ate 20 prescan pixels  With MagIC along with these prescan pixels there  are 40 overscan columns per amplifier and 20 parallel over clocked rows in each frame     5 2   Ouad amplifier frame organization  Frame organization for the quad amp as shown in the above image demonstrates the location of each  amplifier in the final deinterlace of the image and are defined as follows using the IRAF inclusive image  block  x1 x2  y1 y2  or  column I column 2  row 1 row2      Prescan Amplifier A   1 20 1 1025   Prescan Amplifier B   21 40 1 1025   Prescan Amplifier C   1 20 1026 2049    Prescan Amplifier D   21 40 1 2049     MagIC Manual LCO 30 doc 2008 05 14 1 09    19    Image Amplifier A   41 1064 1 1025    Image Amplifier B   1065 2088 1 1025    Image Amplifier C   41 1064 1026 2049    Image Amplifier D   1065 2088 1026 2049   Overscan Amplifier A   2089 2128 1 1025   Overscan Amplifier B   2129 2168 1 1025   Overscan Amplifier C   2089 2128 1026 2049   Overscan Amplifier D   2129 2168 1026 2049   OverClock Amplifier A   42 1065 2050 2088   OverClock Amplifier B   1066 2089 2050 2088   OverClock Amplifier C   42 1064 2090 2128   OverClock Amplifier D   1065 2089  2090 2128        Amplifier A    5 3   Dual amplifier frame organization  This reference is for the dual amp readout for Amps C and D  If switching to dual amp readout for Amps  A and B  the values are the same using A for C and B for D     Prescan Amplifier C   1 21 1 2049    Prescan Amplifier D   21 40 1 2049    Image Ampl
14. co cl  located in  the equipment room of the Baade telescope  The observer can use either observer workstation in  the Baade control room   burro lco cl or llama lco cl   to run the script    magic     which will  automatically log into magic site lco cl and start LOIS  LOIS can be configured to launch one of  several modules that control various aspects of the system  a telescope interface  a camera  interface  SITe or e2v   an instrument interface  the filter wheel   and a display interface     The same version of LOIS controls both the SITe and the e2v  with only minor  differences  mostly options for readout modes and binning   Thus the instructions below apply to  operating either camera  The LOIS module to run the SITe is called    magic    and the module to  run the e2v is    magice11v        MagIC Manual LCO 30 doc 2008 05 14 1 09    3 2  Startup    Normally  an the instrument specialist will already have MagIC II set up and your data  directory for the night created  If so  the only remaining step you need to take before taking data  is to Copy your scripts  1f any  see 84 2   to the LOIS home directory using the FTP program  Transmit  If LOIS is running  you can skip to 83 3     Make a data directory     An internal disk on the magic site computer  intended only for data storage  is mounted  as  data on magic site lco cl  Create a directory under  data for the night s data  This is  temporary data storage and should be erased at the end of each run  To transfer data
15. gIC CCD Camera Control    Quad Amp Bin lxl1 Number of Exp    Exp  Time  sec  Ob ject Title  Single 10 00  2128 1  DARK 2168  test dark frames  FITS Comments  40    test dark frames    any other notes    Dark    any other notes  DARK test 025 fits  Process  ISI On Exposure     Timer        Object    Dark Bias       Frame Type     Figure 6  MagIC CCD Camera Control status while exposing     MagIC Manual LCO 30 doc    2008 05 14 1 09    Once an exposure is complete the process bar says  Reading   Figure 8  until the file is  read out  at which point it briefly says    Storing     When the system is ready for the next action   the bar turns green and says  Camera Ready      Xx Magic CCD Camera Control    Quad Amp Bin lxl1 Number of Exp  1 Exp  Time   10 00   sec  Ob ject Title  Single 10 00  KI pis 1  DARK 2166  test dark frames  FITS Comments  40  Dark any other notes  test dark frames DARK test  025 fits    ling On Exposure    any other notes      w   Frame Type  Object    Dark Bias iar    Figure 7  MagIC CCD Camera Control status while reading out        7    k   9 9 N Magic E2V CCD Camera Control  Dual Amp Ein 1 l Humber of Exp   1  Exp  Time  000 sec  Object Title  single 0 00  1030 1  bias T157  AQ  FITS Comments  Bias    bias utde0470 01 0  fits       Figure 8  MagIC CCD Camera Control status when ready to take the next exposure    Displaying data    All images are automatically displayed to the ds9 window  SAOimage ds9  Figure 9  is a  standard image display and analysis 
16. ifier C   41 1064 1 2049    Image Amplifier D   1065 2088 1 2049   Overscan Amplifier C   2089 2128 1026 2049   Overscan Amplifier D   2129 2168 1026 2049   OverClock Amplifier C   42 1064 2050 2068      MagIC Manual LCO 30 doc 2008 05 14 1 09    20    OverClock Amplifier D   1065 2089 2050 2068   Last Modified  08 3 1 2006        Amplifier  E Appl Piier Dis       MagIC Manual LCO 30 doc 2008 05 14 1 09    
17. ometimes fails to write out FITS files with the error   Error Unable to write the Fits File   Status 413  Error Unable to Close the Fits File     If this occurs  you must restart LOIS for it to figure out how to write files properly again   or else 1t will hang while trying to write out subsequent exposures  Usually everything works fine  on restart  The cause of this bug 1s also unknown  and it 1s somewhat common     4 4  Trouble    Under ideal circumstances the system will have be started and tested ahead of your  observing run by the instrument specialist  and it will remain ready to be powered for your run   When properly set up  the operation of MagIC under LOIS has proven reasonably robust     In the case that odd error messages occur during the startup  simply exit the current LOIS  session and run the start script again  If you still have problems  ask the instrument specialist or  telescope operator to reset the PCI card on the instrument computer  magic site lco cl   If that  does not solve the problem  the instrument specialist or telescope operator will cycle power on  the electronics boxes and reboot the instrument computer     5  AMPLIFIER DEFINITIONS FOR THE SITE    LOIS MagIC Information Document Number  001  Title  Amplifier Definitions   Author  Brian W  Taylor   Started  11 04 2005   Last Revised  08 31 2006    5 1  Introduction  The MagIC SITe 424a CCD has four amplifiers and an image area of 2048 columns and 2049 rows  Each  amplifier when used will gener
18. omputer magic site lco cl prior to the  end of your observing run  AFTER YOU MAKE A COPY OF THE DATA to the observer  computer llama or burro or elsewhere  The data copy on magic site lco cl is intended as  temporary data storage  not permanent data storage  which should be on your DVD  hard drive or  other media     4  OPERATIONAL ISSUES    4 1  Rotator offsets for catalog files    At the central folded port on the Baade telescope  the rotator angle offsets  which are  included in the  cat files for the telescope operator  for target positions are different that those  adopted at the Nasmyth ports  Most observers will chose  0 0 EQU  for columns  8 and  9 of  their catalog file that they give to the telescope operator  see http   www lco cl telescopes   information magellan instruments 1 observing catalogs 1 for a full description of the fields  required in a catalog file   This will produce images that are North right and East down for  southern targets and North left and East up for northern targets     4 2  LOIS scripts  Note  parts of this section may need updating as of May 2008     Scripts written in Tcl can be written to take a series of exposures  change filters and move  the telescope as needed  For use  scripts should be added  using the MAGIC shortcut in  Transmit  to the top level of the observer home directory on magic site lco cl   home observer   since this is where LOIS will look for active scripts  At the end of your run  save your scripts  elsewhere  and er
19. or reading out  LOIS may crash if aborted during read out     Phantom pixels at row 1991  single amp mode  of the SITe    When reading out in single amp mode the software inserts two bogus pixels at row 1991   The sky data is seen shifted  This can in principle be corrected in software  but in practice it lies  so close to the edge of the field  4 arcseconds  that one may not want to go through the effort     Saturation levels for the SITe    Note that amplifiers C and D  the top two quadrants in quad amp mode  as viewed in the  SAOimage ds9 window  saturate at about 35K ADU  well before the other two amplifiers  A and  B  reach saturation     File numbers    When you restart LOIS after running a series of exposures  the file number skips one  1f  the last frame you took in the previous session was 010  the next frame will by default be 012   Check the Storage button on restart to make sure you have the desired file number  This is  actually a feature  not a bug  a skipped file number indicates that LOIS was restarted     Duplicate files  with different file names     Occasionally LOIS has been noted to write out duplicate files of the same image  so you  should watch for this when taking sequences of the same exposures  including darks and    MagIC Manual LCO 30 doc 2008 05 14 1 09    18    biases    The duplicate files will have different numbers  The cause of this bug 1s unknown   You should notify the technical staff if it appears     Failure to write FITS files    LOIS s
20. seconds each   Write to the LOIS log screen  1 filter set has finished  Move bottom filter wheel to Sloan z  filter position    2008 05 14 1 09    16    Script line Explanation of command   go frame object nexp 2 etime 5 an object frame  2 exposures  5 seconds each   log 3  z filter has finished  Write to the LOIS log screen  z filter set has finished   filter wheel 1 pos 0 Move bottom filter wheel to OPEN position   filter wheel 0 pos 2 Move top filter wheel to V filter position   go frame object nexp 2 etime 5 an object frame  2 exposures  5 seconds each   log 3  V filter has finished  Write to the LOIS log screen  the V filter set has  finished   filter wheel 0 pos 3 Move top filter wheel to R filter position   go frame object nexp 2 etime 5 an object frame  2 exposures  5 seconds each   log 3  R filter has finished  Write to the LOIS log screen  the R filter set has  finished   log 3  stdstar has finished  Write to the LOIS log screen  the stdstar script has  finished     Close script    Example  2  dither    The following script sets the filter wheel  takes an exposure  executes a coordinated offset  and takes another exposure     proc dither        filter wheel 0 pos 0   filter wheel 1 pos 3   go frame object nexp 1 etime 60   log 3  r filter position 1 has finished   offset delta ra  10 delta dec 0 delta rot 0  go frame object nexp 1 etime 60   log 3  r filter position 2 has finished   offset delta ra 0 delta _dec  10 delta rot 0  go frame object nexp 1 etime 60   log 
21. sion 4 4 0 MIT  LOIS    Lois Initialized  Waiting for Commands  Auto 5tore  Java Virtual Machine Initialized  Avail  Disk   Dither        Current     Next   Version        Figure 1  LOIS System Console startup screen     Open modules    In the  LOIS System Console  click on the  Configure  button  This will display the  configuration window found in Figure 2     MagIC Manual LCO 30 doc 2008 05 14 1 09    900 X  configlois    Default Configs    Telescope Interface Display Interface          None Hone None None     magellan magic    Magicfilt    DS9 XPA  o magiceiiv  Observers   Adams Affilation  MIT    Figure 2  LOIS configuration window  Set telescope  camera  instrument and display  interfaces here as well as observer information  names and affiliations   Select    magic     for the SITe CCD and    magiceiiv    for the e2v     The standard configuration should be the magellan telescope module  the magic camera  module  for the SITe  OR the magiceiiv camera module  for the e2v   the Mag Cfilt instrument  module and the DS9 XPA display interface  You also have the option to disable any of these  modules  After choosing your configuration  fill in the fields for Observer and Affiliation and  click on  Start      The camera  instrument  and telescope modules will be loaded and initialized  This  process can take a few minutes  mostly for the initialization of the filter wheels  Three new GUI  elements should appear  which are described in the follow section  a    Camera Control 
22. t    Description   SITe  Quad   double   and single amp readouts with gains of 1  approx   2e  ADU  are available    e2v  Double amp readout is available    SITe  1x1  2x2  or 4x4   e2v  Ixl   Enter the number of exposures in a sequence    Enter the exposure time in seconds    Enter the object title  This will be entered into the FITS header as Object   Provides two comment lines for the FITS header    Choose the frame type for the FITS header  Object opens the shutter  Dark  and Bias do NOT open shutter    Takes the current exposure and writes to the temporary file  test fits   This  file will be overwritten by subsequent test images if not renamed    Takes the current exposure  or sequence  and writes the data to the  configured data directory  These files will not be overwritten on the host  machine even if you use the same filename    Abort the current exposure or the current series of exposures  This does not  handle aborting scripts  which must be done from the LOIS system console   It is safer to abort while the status is    Exposing     or LOIS may crash     All information entered into the input fields will be mirrored to the Status window and  recorded in the FITS header  After you choose either Test or Go  a  process bar   Figure 6  keeps  you apprised of what the camera is doing  The process bar is blue while the camera is exposing  or reading out the chip  A timer counts down the remaining exposure time and shows what  exposure number is being collected     Xx Ma
23. t float gt     epoch float The epoch of the coordinates that  you are offsetting from and is  require for an offset w o guiders            Note the  noguide and epoch are used in a relative move that is not coordinated with the  guiders  xx what is meant by  epoch  here  xx       How you use the keywords defines the type of offset you want  For a coordinated RA and DEC  offset with the guiders   offset delta_ra  lt value gt  delta_dec  lt value gt     With the instrument rotator   offset delta_ra  lt value gt  delta_dec  lt value gt  delta_rot  lt value gt     Offset move in RA and DEC without the guiders   offset delta_ra  lt value gt  delta_dec  lt value gt  epoch  lt value gt   noguide    Add the delta_rot value for to include the instrument rotator     Offset move in azimuth and elevation   offset delta_az  lt value gt  delta_el  lt value gt  delta_rot  lt value gt     MagIC Manual LCO 30 doc 2008 05 14 1 09    Example  1  stdstar    15    The following script takes a set of exposures through a series of filters and exposure  times  The script is defined in detail in Table 7     proc stdstar        filter wheel 0 pos 0   filter wheel 1 pos 1   go frame object nexp 2 etime 5  log 3  u filter has finished   filter wheel 1 pos 2   go frame object nexp 2 etime 5  log 3  g filter has finished   filter wheel 1 pos 3   go frame object nexp 2 etime 5  log 3  r filter has finished   filter wheel 1 pos 4   go frame object nexp 2 etime 5  log 3  1 filter has finished   filter wheel 
24. the SITe the same object would be offset 50    E and 5    N  Which offset to use is determined  automatically so long as the correct CCD is specified in the parameter file     MagIC Manual LCO 30 doc 2008 05 14 1 09       ad    900 N IRAF xgterm  0 0    IRAF  Image Reduction and Analysis Facility  PACKAGE   magic  TASK   tomagic     ccdname  e2v  Move to CCD center   site  or    e2v    queryl   yes Send RA DEC offset to TCS    query3   no llo coordinated offset     mode   ql    magic gt  i    Figure 4  Parameter file for IRAF script tomagic  Set ccdname to either    site    or    e2v  3 4  Recording data    Camera control    The camera is controlled through the    MagIC CCD Camera Control  module displayed  in Figure 5  This module is where the observer controls the execution of exposures using either  the  test  or  go  buttons  Table 4 describes each of the inputs for this module     0080 X  Magic E2V CCD Camera Control     Dual Amp Bin 1x1 Humber of Exp    Exp  Time  0 00 sec   Ob ject Title   bias    FITS Comments        Figure 5  MagIC CCD Camera Control module  Use this module to define the number of  exposures  exposure time  object title  type of image  binning  readout mode and  comments  Exposures are taken by selecting either the  test  or  go  buttons        MagIC Manual LCO 30 doc 2008 05 14 1 09    Table 4  MagIC II Camera Control Module Inputs    Input   Detector Mode  Binning  Number of Exp  Exp Time  Object Title  FITS Comments  Frame Type  Test    Go    Abor
25. tool that is fully documented with its own help files  It is  also fully integrated with the IRAF display tools installed on both of the instrument computers   For modifying the display on future images  the following command may be entered into the  LOIS System Console command window     MagIC Manual LCO 30 doc 2008 05 14 1 09    10    LOIS    disp set state on min XXX max XXX scale  lt logllinearlrawlauto gt     It may be helpful to display images in another ds9 window using standard IRAF  commands  See the weblink for  Reducing MagIC Images with IRAF  for more details   OOO   SAOlmage ds9                                                                                                                File Edit Frame Zoom Scale Color Region WCS Analysis Help  File magic20070731  010 fits    Value 7487  linear 1063 000 1028 000  Physical x 1063 000 Y 1028 000    Image x 1063 000 Y 1028 000  Framel Zoom 1 000 Ang 0 000  File Edit   Frame     Zoom   Scale   Color   Region   WCS         about open   save imy   save fits   save mpeg   header source   print page   exit                   SSS tts  Figure 9  Sample of ds9 display tool for LOIS        Instrument module  filter wheel     The filter wheel is controlled through the  MagIC Filter Wheel Control  window  At  startup  the GUI pops up without specifying filter names  Once initialization  which can take a    minute or two  is complete  the wheel positions should all have the correct filters identified   Figure 10      MagIC Manu
    
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