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        ALMA Observing Tool Setup: A CSV Nuts-And
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1.        3 44         5  661 06     881 2   90 9260      oic          tis    l         LJ MN    Frequency  GHz     i i    Ep del 10 1       Lal Mm                Ov  U1  se    euni          Min 50r Max    m             oo                  Search Online       Reset Filters     13 C 34 S v 0     13 C 34 5 v 0      te    7 A    E              CDMS        13 C 34 S v 0      j 11 10     13 C 34 S v 0       54 4975    99 9154       CDMS    CDMS        13     34 5 v 0 J 14 13     6 1111   13     34 5 v 0 J 15 14   13 C 34 S v 0 J 18 17   13     34 5 v 0 J 19 18   13     34 5 v 0 J 20 19     CDMS   CDMS   CDMS     CDMS  CDMS                908           The various options on the left hand side of the panel   Filter Species      ALMA  Band    Frequency  GHz    allow the user to filter on the displayed list of   Available  lines on the right hand side and hence more easily select the specific line  to be observed  The  Search Online  button allows the user to access additional lists  of lines not currently included in the flat field line list distributed as part of the OT   When the desired line has been identified  double clicking on its entry in the list will  automatically insert the appropriate information into the main OT Spectral Spec form   and an ALMA Receiver Band will also be suggested in the appropriate field     In the worked example being developed here  the    SiO v 0 J 2 1 v 0    line at  86 84696 GHz will be chosen     The    Dynamic Range  may be left with a default val
2.       The corresponding Spectral Window setup for the same presented example appears as  follows       SW 1  SpectralWindow Name SW 1    Center Offset Frequency 3000 000   MHz   Adjust Spectral Average Region    Start Channel Num  Channels  Center Freq Rest  LSB   USB 86 84700 GHz     4 120    Center Freq Sky  LSB   USB 86 84700 GHZ      v                                        Nominal BW     Channels  2000MHz      128 M       Effective BW     Channels 2000 0 MHz 128  Resolution 15 625MHz  CorrConfigMode  FilterMode 142 TDM                Polarization Products XX YY              Averaging Factor 1      Window Smoothing Function  HANNING v    BL Only                         Correlation Bits  BITS 2x2       Oversampling  _  Quantization Correction          It is also possible to sanity check the Spectral Spec somewhat using the    Spectral    tab  of the    Editors    panel  Click on this  and a pair of plots will be shown  with all the  previously edited Spectral Spec forms information to the right of these  For a full  explanation of all the components of the plots  see the OT User and Reference  Manuals  but to obtain a quick view of the Spectral Spec already specified  click on  the    Zoom to Band    button just below the first of the frequency plots  and this will  cause the plot to be redrawn on a zoomed scale  It should then be possible to see the  LO  frequency  the frequency coverage of the sidebands used  the frequency range of  the BaseBand Configuration s  used  in
3.     panel  All of the above  notes in  a  for the    Forms    tab apply equally to the right hand side of  the    Editors    panel  In addition  a graphical display panel of the target  field may be displayed on the top left hand side of the    Spatial    panel   The various settings for the image query and display parameters are  towards the lower left of this panel  the online image database to be  queried  the field of view and frequency used  etc  may all be set up  here  The image display will also allow the overplotting of the Field  Pattern pointings  This is particularly useful for  e g   mosaics  For  more details of all the possibilities available here  please see the OT  User and Reference Manuals     The following figure shows an example of a simple sidereal motion source  with its  position obtained via automatic name resolution     Project  0    Alma Observing Tool R7 0 for Chajnantor at 23 025  67 75W    Bg P     Z  Ie  el       Project Structure        05 22 22 800                             Using the above procedure to also add a non sidereal object  Uranus  gives     Project  0    Alma Observing Tool R7 0 for Chajnantor at 23 02S  67 75W  File Edit Tool Search Options Help Perspective 1  Eg 523   e   v S    s Ke el  Project Structure     Editors  Lo  This FieldSource is used by no targets   2     Project  0    Field Source        Science Plan                             E      C Special Observing Program Field Source Name  Uranus         amp h Orion with Ca
4.   Frequency  and    Instantaneous Data Rate  fields  For the presented example  the   LO  Frequency  will be automatically set to 92 81575 GHz  and the     Instantaneous Data Rate  will be set automatically     For the presented example  the    BaseBand Configurations  section of the    Forms    tab  of the  Editors  window then looks like the following     BaseBand Configurations       Name Center Freq  Rest  Data Product   Sideband Separation LO2 Frequency   Instantaneous Data Rate    BB 1 86 84700 GHz CROSS AND AUTO  NONE 8 96875 GHz 0 198 MB s                         Add BaseBand     Delete BaseBand          Setup Preferences Results          Sideband s  to prioritise LSB                r1 LO  Frequency 92 815 75 GHz    i Total Data Rate 0 198 MB s  Calculate LOs                   Base band config s  to prioritise                      Baseband Name BB 1 LO2 Switching    LO2 Frequency Switching      Desired Center Freq Rest 86 84700   GHz     Numb f Positi           umber of Positions             Actual Center Freq Rest  0 00000 GHz l  Actual Center Freq Sky    0 00000 GHz Dwell Time          Accumulation Mode NORMAL    Products  amp  Sideband Separation CROSS_AND_AUTO  amp  NONE  Spectral Windows                  ind LSB Rest  USB Rest  we Bandwidth Chs Resolution Polarization sensitivity   Data Rate    ise  LSB  3000 0  86 847 GHz I        2000 0 MHz 128  15 625 MHz                     Sensitivity  202 546 K                      Add   Copy amp Add   Delete               
5.   defaults  1 e     Averaging Factor    will be left with a default value of     1    Window Smoothing Function  will be left as    HANNING          Set the    Spectral Average Region     One should normally attempt to  crop a bit from each end of the region used when calculating the  spectral average  Note that at least one spectral average region must be  specified  For the presented example  128 channels in total are to be  used  so it probably makes sense to clip  e g   4 channels from each  end for averaging purposes  Under the    Spectral Average Region   table to the right of the tabbed SW pane  click on the    Add    button   This should produce a new row in the    Spectral Average Region   table  containing two    0    entries  Double click on the    0    in the    Start  Channel column  and replace the zero with the number of channels to  be excluded  For the presented example  this will be 4  Then  double   click on the    0    in the    Num  Channels  column  and set this to be the  total number of channels being used  minus twice the entry in the   Start Channel  column  For the presented example  this would  therefore be 128       2 x 4     120  This ensures equal clipping at both  ends of the frequency range    14  Calculate the LO settings  Scroll back up to the  Setup Preferences  section of  the  BaseBand Configurations    section of the    Forms    tab  and click on the   Calculate LOs  button  This should result in the automatic correction of the    LO gt 
6.  Cal 1BB 12mArray SB  12mArray 58           1 Target  o omc 1  Science   9 C Resources          2 Field Sources    D     3 Uranus Uranus  9  4j 1 Instrument Setup                    4 Observing Parameters     3 OMCcal Simple       Simple       AmplitudeCalParameters       Note the highlighting of the three resources associated with the selected    omc 1   Science     Target  Also note that a resource may be used by more than one Target   For the presented example  an amplitude calibration target may also be set up using  the above methods for approriate Resources  resulting in the following associations        mm Project  0    9      Science Plan   9  C Special Observing Program             Orion with Cal   188     EF  Orion with Cal 1BB 12mArray SB  12maArray SB   9   j 2 Targets     omc 1  Science        Uranus  Amplitude   9 CI Resources   9  4j 2 Field Sources       OMC 1 omc 1        Uranus Uranus    9  4  1 Instrument Setup    D             4 Observing Parameters     OMC simple   3 OMCcal Simple   3 Simple        AmplitudeCalParameters       Addition of Calibrators  The Easy Way    It is possible to add suitable calibrator sources to a project in the OT relatively easily  using the included    ALMA Calibrator Selection Tool     which allows the easy  identification and selection of nearby calibration objects     2T     2     23     24     Select the target needing a calibrator and launch the Calibrator Selection  Tool  In the    Project Structure  panel  click on the Ta
7.  be selected as a Phase  Calibrator  and then the resultant target associated with the pre existing    OMCCal  Simple    Observing Parameters and    Single BB TDM Instrument Setup  Note that the   Link to same setup  option will still create a new empty  PhaseCalParameters   Observing Parameters Resource  which will need to be detached from the new     10607 085    Target and deleted  The new calibrator Target can then be associated  with the  OMCcal Simple  set of Observing Parameters previously created  Similarly   an additional Pointing Target using the existing calibrator Field Source J0607 085 can  be set up to use the    Simple    set of Observing Parameters  The resulting extensions to  the presented example are as follows     7 tg   Project  0        i Science Plan             Special Observing Program     By Orion with Cal   188   Y  Orion with Cal 1BB 12maArray SB  12maArray SB    9       4 Targets  9  omc 1  Science   9  Uranus  Amplitude   iQ  0607 085  Phase       0607 085  Pointing    9  C Resources       4 4 Field Sources   3 OMC 1 omc 1     3 Uranus Uranus          Calibrator  J0607 085      4j 1 Instrument Setup    9      4 Observing Parameters   3 OMC simple         Simple   3 AmplitudeCalParameters    7      Project  0           Science Plan           Special Observing Program      Bh Orion with Cal   188   1 Orion with Cal 1BB 12maArray SB  12maArray 58   9       4 Targets  9  omc 1  Science    9  Uranus  Amplitude    9 0607 085  Phase      J0607 085  Poin
8.  by 1 target    Pointing Cal Params    Pointing Cal Params Name Simple   ple   O   Cycle Time 30 00000     Default Integration Time 1100 00000   s       ata origin CHANNEL AVERAGECROSS    gt   Desired Accuracy 10 00000    Pointing Method FVEPONT  v  Maximum Elapsed Time  60 00000       1        Advanced Parameters             Observing Parameters     Ca   DelayCal  JJ AmplitudeCal    This AmplitudeCalParameters is used by 1 target   Amplitude Cal Parameters    Amplitude Cal Parameters Name  Cycle Time 3 00000       h iw    Default Integration Time 90 00000   5     Data origin CHANNEL  AVERAGE  CROSS M    Advanced Parameters             The Project Structure panel for the presented example is then as follows         Project  0           Science Plan      C Special Observing Program  9 K Orion with Cal   188  e EH Orion with Cal 1BB 12mArray SB  12maArray 58      0 Targets  9         Resources           2 Field Sources        OMC 1           1      Uranus Uranus  9       1 Instrument Setup        Single BB TDM 12maArray 58   1 BBC       214 Observing Parameters   3 OMC simple        OMCcal Simple     3 Simple   3 AmplitudeCalParameters       Association of Resources with Targets   Once all the independent Resources have been created  it 1s necessary to link together  one of each type in order to fully define a Target  To illustrate this process for the  presented example  a Science Target shall be created     17     18     19     20     Create a new Target  In the    Project St
9.  will update the selected entry to  read    1 Instrument Setup   and create a single Instrument Setup resource  initially  labelled  SpectralSpec 12mArray SB   OBBCs      As usual  right   clicking on this  entry  or using the first data entry field in the Editors  panel  allows the label for  this Spectral Spec to be changed to a more meaningful  user chosen label  in the  example being developed in this document  the Spectral Spec will be renamed to   Single BB TDM     to denote that a single baseband will be specified for TDM  mode     8  Select a Rest Frequency Transition and Receiver Band  Spectral Spec pane    Although it 15 perfectly possible to just enter the rest frequency information into  the appropriate data entry fields in the    Forms    tab of the    Editors    panel  the OT  also provides access to a spectral Line Catalogue  courtesy of  Splatalog    To use    this  click on the  following figure        Line Catalogue    button  This produces a window as in the    Choose Spectral Line    Filter   Species Available      Catalo   CDMS   CDMS   CDMS     CDMS  _ CDMs       CDMS       CDMS     CDMS    CDMS   CDMS   CDMS   CDMS  CDMS      Frequency    110 2014  220 3987  330 5880        Transition   13 CO v 0 J 1 0  ALMA Band  13 CO v 0 J 2 1  z      13 CO v 0 J 3 2     13 CO v 0 J 4    1234    13 CO v 0 J 6   13 CO v 0 J 8   13     34 5 v 0       13     34 5 v 0 J   13     34 5 v 0    95088   13     34 5 v 0    CJ   113    34 5 v 0 J     13 C 34 S v 0              
10. ALMA Observing Tool Setup  A CSV Nuts And Bolts  Guide To Scheduling Block Creation    Standard Interferometry Mode  Preamble    Purpose of this document  What this document is  and what it is  not    The purpose of this document is not to provide full instructions on the general use of  the ALMA Observing Tool  OT   The development team delivery includes several  detailed documents on this  including a full user manual and a reference manual   Users intending to prepare full proposals or complex  high level projects for ALMA  should instead refer to those fine documents instead  The low level  grisly details of  parameters such as correlator dump time  etc  will normally be handled by the  automatic Scheduling Block  SB  generation features of the OT     The sole objective of this document 15 to provide functional instructions on how 10  prepare simple  fully functional SBs from the ground up  based around the Standard  Interferomentry observing mode  primarily for CSV purposes     OT Versioning Note    These notes were created on the assumption that version R7 0  the version currently  deployed on the OSF STEs  as of February  2010  is used  Some menu options  etc   will vary slightly from the UT7 0 version that was subsequently circulated for the  purposes of the January February 2010 OT user test  Given that it 1s expected that  subsequent releases of the OT will use the newer menu structure  any such differences  will be identified in the text below in red and alternate 
11. Orion with Cal   1BB 12maArray SB       Observing Group 1  4  Observing Group 2  9 914 Targets  9  omc 1  Science   69370607   085  Phase   O Uranus  Amplitude      10607  085  Pointing   9  C Resources      4 3 Field Sources        OMC 1           1      Calibrator  70607 085   3 Uranus Uranus  9  4  1 Instrument Setup      9   amp J 4 Observing Parameters   3 OMC simple        OMCcal Simple   C Simple      3 AmplitudeCalParameters       A short Appendix on how fo cheat  Using Templates    To speed up the process of SB creation considerably  it is possible to open an existing  SB to use as a non writeable template  and then copy paste  or simply drag and drop   items in the    Project Structure  panel     A set of standard examples are included within the distributed OT  To access this in  OT R7 0  use the    File   Open Standard Library  drop down menu option  This will  open up a set of standard examples in a lower  read only pane of the  Project  Structure  panel     To access the standard template library in OT UT7 0  use the    File   Show ALMA  Template Library  drop down menu option     similarly  it is possible to open up a locally stored  aot file to act as a template in the  same manner  This is done in OT R7 0 using the    File   Import Project Library  drop   down menu option     To open a locally stored  aot file to use as a read only template  use the    File   Use  Project as Template   From File  drop down menu option        Very nice  but does it actually wo
12. ame resolution  some of the supplementary fields may end up  with nonsensical numbers  e g  the  Source Radial Velocity  is  sometimes nonsensical for some quasars   If a resolvable name is not  available for the object in question  it will need to be specified  manually in the    Source Coordinates  and other fields  If the source  has non sidereal behaviour  check the    Non Sidereal Motion box   and  this will cause the form to change to allow the selection of Solar  System objects from a drop down menu  For the current purposes  it 1s  probably not necessary to enter explicit  Source Properties       Set the Field Pattern  Below the  Source Properties  specification   the Field Pattern may be specified  Note that the  Beamsize  settings  will be automatically generated  based on the input for other fields   However  a    Field Pattern Type  still needs to be specified  Currently   the only supported options are  Point    Rectangle  and    Cross      selection of any one of these will result in the generation of an  additional form immediately below  allowing the specifics of the field  pattern to be set  such as any pointing offsets to be applied  the size    and sampling of the rectangle chosen  the orientation of the cross  etc   The rectangle option may in turn be used to generate a rectangular  mosaic of pointings  For more details of all the possibilities available  here  please see the OT User and Reference Manuals       Using the    Spatial    tab of the    Editors
13. annels     These may be adjusted to suit  the specific needs of the SB being created  Note that each of these two  have drop down menus that include entries in black  grey and grey   with strikethrough  Choices in grey with or without strikethrough are  invalid  Choices in grey without strikethrough in the    Nominal BW     Channels    fields will be valid and turn black when one of the valid  choices 1s chosen for the other  Strikethrough indicates that the value 15  not available as a valid option against any of the choices of the other   note that availability also depends on the displayed settings of other   related parameters  including    Polarization Products        Correlation  Bits      Oversampling   and    Quantization Correction       In summary  If the  Nominal Bandwidth    entry is grey with   strikethough  then none of the listed options for      Channels  will be  available in black  i e  valid   Conversely  if the      Channels  entry is  grey with strikethough  then none of the listed options for  Nominal  Bandwidth  will be available in black  i e  valid      For instance  for a setup along the lines of the presented example  a  combination of a    Nominal Bandwidth  of 2000 MHz       Channels   of 128 and    Polarization Products  of    XX    would be identified as an  invalid mode  Under these circumstances  the      Channels  value of  128 is displayed as grey strikethrough because there are no valid  selectable options for  Nominal BW  that are availabl
14. dicated by    BBC    plus a number   and the    frequency of the spectral line chosen for observation  For the presented example  this  display is as follows     Receivers  amp  LO Visualisation    Observed Frequency    SiO y   95100 00100 05100  Freauencv in Taraet Frame    v  Basebands Other Lines Reset       BBC Centre Frequencies  v  Receiver Bands Pan to Line    v  Side Bands r  Transmission Zoom To Band       Note that the chosen SiO line falls in the middle of the    BBC 1    range  Also note that  it is possible to interactively adjust the frequencies covered by the sidebands by click   dragging the line indicating the LO  frequency  For the purposes of this document  the  details of the lower plot will be skipped  Once the    Spectral    view looks satisfactory   click back to the  Forms  tab     OK  that s all the really complicated stuff done       Resource Creation  Observing Parameters  The third and final type of Resource to be set up are the    Observing Parameters      15  Create a new Observing Parameter Resource  In the    Project Structure  panel   right click on the    O Observing Parameters  entry  This will produce a contextual  menu containing a rather long list of possible types of  Observing Parameter   sets  For the presented example  a set of Science Observing Parameters will first  be set up just to illustrate the general process  so  Add Science Parameters  will  be chosen here  This will result in the addition of a new    ScienceParameters     en
15. e    Forms    tab of the Spectral Spec  for the presented example are as shown below     Spectral Spec    Spectral Spec Name  Single BB TDM    Rest Frequency 86 84696 GHz        Transition iO v 0 J 2 1 v 0 Line Catalogue  Receiver Band ALMA RB 03 w Receiver Type TSB  Dynamic Range 0 0 Sub Scan Duration  30 24000    Total power with square law detectors    Switching    Switching Type  NO SWITCHING w Number of Positions    Dwell Time Dead Time    Correlator Configuration       11      12     Integration Duration  6 04800 S w  Channel Average Duration  2 01600  Atmos  Phase Correction Data To Save AP UNCORRECTED  BL Only    Dump Duration 1 00800    Create one or more Baseband Configurations  The next step is to set up the  baseband configuration s   For the purposes of simplicity  only one baseband will  be set up for the presented example  Click on the    Add Baseband    button  This  will add an entry to the  BaseBand Configurations  table in the    Forms    tab of  the  Editors  panel  By default  up to four of these may be added  but to retain  simplicity in the presented example  just one will be set up    Set up the details of the BaseBand Configuration  This can be done by either  double clicking on the appropriate entries in the table and typing in replacement  values  or by entering the details in the approriately tabbed pane just below the  BaseBand Configuration table  The second method will be described here       f more than one BaseBand Configuration 1s being set u
16. e for the  combination of      Channels  setting of 128 together with a     Polarization Products  setting of    XX     However  the    Nominal BW   field value of 2000 MHz 15 only displayed in grey  because this  quantity may be made valid by changing to one or more of the other         Channels  options     An important general note on correlator modes  Only certain  combinations of settings for    Polarization Products      Nominal BW         Channels      Correlation Bits    Oversampling  and    Quantization  Correction  are possible  due to hardware limitations on the correlator    data rates  If  during the creation of a future SB  the reader values  resolution more than polarizations  then the    Nominal BW      Channels    values should probably be chosen first  with the     Polarization Products    option selected after that  Conversely  if the  primary objective of the new SB to be created is the acquisition of  polarization data  then    Polarization Products    should probably be set  first in the OT  and the    Nominal BW     Channels  set after that     For the presented example  values of 2000 MHz and 128 channels will  be used  in conjunction with the    XX YY    setting for the    Polarization  Products    field as already indicated in the previous bullet point        Set the remaining SW parameters  As mentioned above  the  remaining SW parameters are affected by the nominal bandwidth and  number of channels chosen  The remaining parameters will be left with
17. e form then appears as follows     Observing Parameters    Science       This ScienceParameters is used by 1 target   Science Parameters    Science Parameters Name  OMC simple       Representative Bandwidth 2 00000  Representative Frequency 86 80000  Sensitivity Goal 1 00000  Integration Time 20 00000    Advanced Parameters       Note that in the above figure  there are a much larger number of tabs that are greyed  out  Each of these contains a set of parameter fields that are unique to the type of  observation type to be done     Using the above method  additional sets of Observing Parameters will also be set up  for the presented example for Phase Calibration  called    OMCcal simple  here    Pointing Calibration  called    Simple    here   and Amplitude Calibration  called the  default    AmplitudeCalParameters    here   These various sets of parameters are  indicated below     Observing Parameters    BandpassCal OpticalPointing   Holography  iZati   DelayCal    PolarizationCal AtmosphericCal  PhaseCal PointingCal AmplitudeCal    This PhaseCalParameters is used by 1 target   Phase Cal Parameters    Phase Cal Parameters Name  OMCcal Simple    Cycle Time  90 00000   5  v    Default Integration Time  10 00000   5      Data origin CHANNEL AVERAGE  CROSS           Advanced Parameters    Observing Parameters    BandpassCal OpticalPointing   Holography  DelayCal    PolarizationCal   FocusCal   AtmosphericCal  PhaseCal PointingCal AmplitudeCal    This PointingCalParameters is used
18. established  during Step 1   then the system should be left as it is when the SB testing has been  completed  If the ACS system was started in Step 1  then to finish the testing  session  type     acsStop    
19. he bottom  open for these purposes  As with all OT panels  this can be hidden by clicking on  the small downward pointing arrow on the top left of its border    e For SBs like the ones created here  the    Indefinite Repeat  option  available under  the Scheduling Block   yellow clock  entry  should always be checked  or the SB  will disappear from the Scheduling list after it has been executed      e Although the positions of the calibrator objects are good  the fluxes provided by  the OT should not be trusted  as many calibrator sources are intrinsically variable   The current fluxes of any calibrators should therefore be checked against more  recent catalogues     Initial Project Creation and Structure    1  Create a New Project  Launch the OT  It should come up with a new blank  Proposal  Make sure that the    Program    tab is selected in the    Project Structure   panel on the left hand side    2  Add an ObsUnitSet  In the    Project Structure  tab  right click on the purple     Science Plan  folder  and select    Add ObsUnitSet   This should result in the  insertion of a  Special Observing Program  folder inside the Science Plan  and a  new  UnitSet  empty     entry  with a white stacked clock icon    this is the actual  ObsUnitSet  Right clicking on this allows it to be renamed to something more  specific to the project  e g     Orion with Cal     188        3  Add a SchedBlock  Right click on the ObsUnitSet entry  in the  Project  Structure  tab  and select    Add Sc
20. heduling Block   This should add a   SchedBlock  entry  with a yellow clock icon   This may also be re named in the  same way as for the ObsUnitSet  Right click on this and choose    Expand All    to  see it s full internal structure  This should show that the SB contains a set of  0    Targets   and a    Resources    folder  which in turn contains a set of  0     Field  Sources    0   Instrument Setup   s   and  0     Observing Parameters   The Project  Structure panel should look something very like the following      gt      Project  0         Science Plan  9  CI Special Observing Program      By Orion with Cal   188  158   7 EF  Orion with Cal   1BB 12maArray SB          0 Targets  9  CI Resources  4 0 Field Sources  4  0 Instrument Setup       0 Observing Parameters       An aside  as was briefly noted earlier  a  Target  in the OT is more than just the  astronomical object towards which the telescope is to be pointed  For each target  it is  necessary to include an association to one of each of the three resource types listed     Field Source  Instrument Setup  Observing Parameters   The above is the basic  underlying structure required for the specification of all SBs ObsUnitSets     4     Save a local copy of the Project  do this periodically   As with most content  creation programs  it is usually wise to save a copy of one   s progress periodically   From the    File    drop down menu  select    Export to disk       to save a copy of  your work in progress OT Projec
21. instructions provided     The version you are currently running 15 indicated in several locations  It 1s shown in  the top right of the splash screen on startup  and usually at the top of the title bar of  the window when creating a new project  The splash screen can also be viewed at any  time by using the    Help   About  drop down menu     Various Useful things to know before beginning          n general  select the project component with details to be edited  e g  Field  Source  SB  Science Parameters  etc   should first be selected in the    Project  Structure    panel  This will then cause the contents of the    Editors    panel to be  updated  showing all the details of that particular item     In OT terminology  a    Target    is not simply the astronomical object to be  observed  it is an observational target or objective  and incorporates a  specification of the type of observation  the astronomical object to be observed   and the instrumental setup to be used  including exposure times  etc         As of OT version 7 0  Observing Groups must always be used in SBs    e If using the UT 7 0 version of the OT for the first time  go to the    Options    drop   down menu  select    Advanced     and ensure that the    Enable Advanced User  Features  option 15 enabled  If not  enable it and click the    Apply    button  This  just ensures that all the same advanced features as for R7 0 are available       tis probably not necessary to keep the    Contextual Help  panel at t
22. l   188 Source Name Uranus Resolve             Orion with Cal 1BB 12mArray SB  TM   EX pe       0 Targets Non Sidereal Motion  v  Solar System Object Uranus hd  9 C Resources   Ephemeris       4 2 Field Sources Source Properties _     3 OMC 1 omc 1 E   Frequency     Diameter      Uranus Uranus          0 Instrument Setup  J 0 Observing Parameters          Visible Magnitude  Use Reference     Reference Position  Offset   Field Pattern    Beamsize  0 GHz 12m  0 0 arcsec  7m  0 0 arcsec i       Select Type ix                  Show Ali Hide All           Spectral    Spatial   Forms    Proposal Program         gt                               Note that the ultimate intention here 1s that Uranus will later be identified for use as  an amplitude calibrator source  so there is no need to specify a Field Pattern at this  Stage     Resource Creation  Instrument Setup  Spectral Spec     This is probably the most complicated part of the whole process  so it s all downhill  after this    For the purposes of retaining some  relative  simplicity in this document   the creation of an SB with a single BaseBand Configuration will be described here   For a good example of a setup involving four BaseBand Configurations  see Figure  10 3 in Section 10 2 5 of the ALMA OT User Manual     7  Create a New Instrument Setup Resource  Spectral Spec in this case   Right   click on the    0 Instrument Setup  entry in the    Project Structure  panel and select   Add Spectral Spec with BL Corr Config   This
23. nite Repeat checkbox should be checked  N B  This is very  important  in order to ensure that the SB can be re run as many  times as needed for Commissioning   The    Max  Time    field  which  denotes a maximum allowed wall clock execution time should be set  to something large but realistic  for the presented example  a value of  60 0 minutes will be adopted  The    Obs  Procedure    field should have  been automatically set to    StandardInterferometry py    when the   Mode Name  field was set  The    Run Quick Look  checkbox should  always be checked    e    Advanced Parameters     This should be skipped    e    Performance Goals   These can probably be left with default values  for the current purposes         Temporal Constraints   This is not currently used     27  Create the Observing Groups  In the    Project Structure  panel  right click on    28     the SB item  with the yellow clock icon   and select    Add Observing Group    This must be done at least twice  as it is necessary to ensure that each SB has  at least an Amplitude Calibration target in the first Observing Group  The  Science observation target s  should then be placed in the subsequent  eroup s     Set up the first observing group  Click on the new    Observing Group 1  item in  the    Project Structure  panel  This will present the user with an    Editors    panel  containing two tables  the first headed  All Available Targets  and the second  headed    Observing Group Targets   Clicking on a table e
24. ntry in the former allows  it to be selected  and the right pointing arrow button between these two tables can  then be used to add or the selected entry from the    Observing Group Targets   table  A similar process using the left pointing button allows objects to be  deselected for inclusion in the currently chosen Observing Group  A different  Observing Group may be chosen by clicking on its entry in the    Project Structure   panel  For the presented example  the amplitude calibration  Uranus  Amplitude    and pointing calibration    J0607 085  Pointing   Targets will be included in     Observing Group 1     and the  omc 1  Science   and  J0607 085  Phase        Targets will be included in    Observing Group 2   The presented example project  is then as follows     For    Observing Group 1        All Available Targets       Source Name    RA       DEC    Rest Frequency    Purpose       05 35 13 920  06 07 59 700  00 00 00 000  06 07 59 700     05 22 22 800   08 34 49 980  00 00 00 000    08 34 49 980    86 84696 GHz  86 84696 GHz  86 84696 GHz  86 84696 GHz    Science  PhsCal  AmpCal  PntCal                      For    Observing Group 2        All Available Targets     DEC    Observing Group Targets          Source Name       RA DEC Rest Frequency Purpose       Uranus  10607 085       00 00 00 000 00 00 00 000 86 84696 GHz AmpCal  06 07 59 700  08 34 49 980 86 84696 GHz PntCal             Delete                         Observing Group Targets       Rest Frequency    Purpo
25. ociation  The same method as above  can then be used to associate    Instrumental Setups    and    Observing Parameters    In the    Spectral Spec    pane of the    Forms    tab of the    Editors    panel for the  target  double click on    Single BB TDM    and click on the corresponding    OK     button    Set up the new  Target  Observing Parameters association  For the     Observing Parameters  pane of the    Forms    tab of the    Editors    panel  it is first  necessary to indicate the type of    Observing Parameters  to be specified  For the  science target in the worked example  the  Science  checkbox should be selected   note that 1t 1s actually possible here to associate a given Target with more than  one set of    Observing Parameters   but for the simple example here  only one    Science   will be used  When the  Science  selection box has been checked   this will produce an adjacent drop down menu  From this menu  the existing sets  of    Science    Observing parameters are available for selection  plus the option to  create a new one  For the presented example     OMC simple    will be chosen   Clicking on the    OK    button at the bottom of the pane will replace the pane with  the familiar set of Science Observing Parameters previously set up for    OMC  simple   The    Project Structure  for the presented example now appears as  follows          Project  0        amp  Science Plan      Ci Special Observing Program     By Orion with Cal   188     EF  Orion with
26. p  ensure that  the intended tab has been selected      Enter the    Desired Center Freq  Rest    For the presented single   BaseBand Configuration example  just enter the frequency of the line  to be that of the line to be observed  For the presented example  the  S10   this would be 86 8470 GHz    e Set the    Accumulation Mode     For current purposes  this should be  set to    NORMAL        Set the    Products  amp  Sideband Separation     For current purposes   this should be set to    CROSS AND AUTO  amp  NONE        13  For each BaseBand Configuration  set up the Spectral Window s      Add a Spectral Window  Click on the    Add    button  just below the   currently empty  table of    Spectral Windows     This will add a  first   tabbed Spectral Window  SW  pane called  SW 1   Note that there  must be a least one spectral window specified    Set the    Center Offset Frequency     This can be left with the default  value of 3000 00 MHz for the purposes of the presented example  This  is the center frequency of the spectral window  between 2000 and 4000  MHz  This value is an offset into the 2GHz bandwidth of the  baseband  and can only take discrete values  determined by the step  size of the band  i e  2GHz   2      30 517578125 kHz    Set the    Polarization Products     This should be chosen so as to   obviously  select the desired polarization products  For the presented  example     Polarization Products    will be set to    XX  YY       Set the    Nominal BW     Ch
27. result in the production of another window called  Create Calibrators   which  contains a form allowing the selection of the calibrator role s  of the object  At the  right hand side of the window are options  under the heading    Copy  SpectralSpec   for automatically generating associations between the new  calibrator Target and existing Resources  The first option     Copy to new setup   will create a full set of new resources  including a Spectral Spec  that would then  need to be defined  The second option    Link to same setup  will automatically  create associations with the Spectral Spec used by the previously selected Target   omc 1 in the example  and create a new blank set of associated Observing  Parameters  The third option    Do nothing  will create the new calibrator Target  with no Spectral Spec association  allowing the user to create an association  manually as described above  For the sake of maintaining simplicity in the  presented example  and for the reason that pointing calibrators and phase  calibrators are generally selected based on different criteria   the actual calibrator  object used in the presented example will be treated as two different objects but  using the same Spectral Spec  and so the  Link to same setup  option will be used  for both the phase calibrator and the pointing calibrator  The Target Resource  associations will then be set up manually  as already described above     For the presented example  the source        0607 085    will
28. rget entry needing a  calibration source  For the presented example  the  omc 1  Target will be used   Clicking on the    Tool    drop down menu and selecting the    ALMA Calibrator  selection Tool  option will result in the Calibrator Selection Tool window being  launched  with the desired Field Object position already entered    Specify a Search Radius and run the search  Enter a search radius in degrees in  the    Radius  deg   field of the Calibrator Selection window  e g     10    for the  presented example   and click on the    Filter    button    Filter the calibrator search result by type  if necessary   The resultant search  list may be further filtered by clicking on the    Best Phase Cal      Best Pointing  Cal   etc  buttons in the Calibrator Selection window  Clicking on the    Filter     button undoes this further selection  Note that the current list of objects available  to the tool 1s very limited  A so note that although the positions of the objects are  good  the flux densities should not be trusted  as many calibrator sources are  intrinsically variable  The current flux densities of any calibrators should  therefore be checked against more recent catalogues  For the worked example  the  calibrator source    J0607 085    will be selected for use as a Phase and Amplitude  Calibrator    Select the calibrator object and indicate its role  Click on the row of the chosen  calibrator in the search results table  and click the    Select As     button  This will  
29. rk       A short Appendix on  how to test newly created SBs    In Chile  some testing of an SB may be conducted using the Observing Script  Simulator  This is essentially a program that just parses the XML in the SB     1  On an STE on which the ALMA Common Software  ACS  is available  establish  if the ACS system 15 already running  this may be checked by attempting to run  the simulator as below in Steps 3     6  without first attempting to start ACS   If  ACS 1s already running  jump straight to Step 2  below   If ACS is not already  running  it should be started  This may be done by typing     acsStart    2  Create a new subdirectory and copy the  aot file  produced by the OT  into it   3  The  aot file format is essentially a zipped file which will need to be unzipped     unzip   filename    in which   filename  is the name of the  aot file   4  The project will unzip to create at least     XML files     e ObsProject xml  e  ObsProposal xml  e SchedBlock0 xml    5  The Observing Script Simulator can be found at the following filesystem location    alma ACS 8  1 A CSSW bin ObservingScriptSimulator  6  The following can then be typed to run the simulator     ObservingScriptSimulator  v  s  lt foo py gt   f SchedBlock0 xml    In which   foo py  should be replaced with the name of the script that is intended  to be used with the SB  e g  StandardInterferometry py   The  v option provides  verbose output    7  If the ACS system was already running at the start of SB testing  
30. ructure  panel  right click on the    0  Targets    entry  and select    Add Target     This will generate a new    Target    entry  under the    0 Target  heading  which will have also changed to read    1 Target    Set up the new  Target  Field Object association  Click on the new    Target     component  and the    Forms    tab in the    Editors    window will show a set of three  panes  one for each Resource type  Each panel will contain a    Resource to Use     drop down menu with a    Create New    option  followed by a table of all the  resources of that type already defined  All of the necessary Resources for the  Science Target that is being created for the example have already been defined  so  it is only necessary to identifty them with the target  To select the appropriate   Field Source  for the presented example  double click on the    OMC 1    entry in  the table  This will cause it to be displayed in the    Field Source To Use  box  above the table  Then  simply click on the    OK    button below the table  and the  whole panel will be replaced by the    Field Source    set up form used earlier  but  containing all of the previously supplied information for the OMC 1 science  object  The    OMC 1 entry in the project structure panel will also now be  highlighted  to reflect its direct association with the    Target    entry  the name of  which will have also changed to reflect the use of the    omv 1    field source    Set up the new  Target  Spectral Spec ass
31. se       05 35 13 920    06 07 59 700  00 00 00 000  06 07 59 700     05 22 22 800   08 34 49 980  00 00 00 000    08 34 49 980    86 84696 GHz  86 84696 GHZ  86 84696 GHz  86 84696 GHZ    Science  PhsCal  AmpCal  PntCal             Index Source Name    RA DEC    Rest Frequency Purpose       1 omc 1  2 10607 085    05 35 13 920  05 22 22 800 86 84696 GHz Science    06 07 59 700  08 34 49 980 86 84696 GHz PhsCal                Delete                         The example SB is then functionally complete  with a structure as below     9     System check   Orion with Cal  0   9      Science Plan           Special Observing Program        Orion with Cal   188     EF  Orion with Cal   1BB 12mArray 58     Observing Group 1      Observing Group 2  9 94 Targets     omc 1  Science   9  10607   085  Phase   9 Uranus  Amplitude      8 10607  085  Pointing   9   J Resources      4  4 Field Sources        OMC 1 omc 1        Calibrator  J0607 085       Uranus Uranus          Calibrator  J0607 085  9       1 Instrument Setup          Single BB TDM 12mArray SB   1 BBC            4 Observing Parameters        OMC simple        OMCcal Simple        Simple        AmplitudeCalParameters       As a final exercise  the reader is encouraged to try to streamline the above example so  that only three Field Sources are used without sacrificing any functionality  as below          mx System check   Orion with Cal  0           Science Plan      CJ Special Observing Program        Orion with Cal   188     
32. t to your local hard disk drive  Note  In UT7 0  and later versions  this is instead done by using the    File    drop down menu and  selecting the    Save Project   To File       option instead     The next step is to specify the details of the individual resources that will be needed  for the Project     Resource Creation  Field Sources    5     Create a new Field Source entry  Right click on the    0 Field Sources  entry in  the    Project Structure  panel and select    Add Field Source   This should add a  new Field Source entry  and the parent    0 Field Sources  container entry label  should have changed to  1 Field Source  to reflect the existence of the new Field  Source    Specify a Field Source Object  This is done in the    Editors    panel in the upper  right of the OT  There are two ways to do this       Using the  Forms  tab of the  Editors  panel      Label the source  Click on the  Field Source Name  data entry field   and enter a name for the object  This 15 just an label for the object  for  easy reference by the Program creator and executor      Identify the source  If the object has sidereal motion and a well   known  database resolvable name  this can be entered in the    Source  Name  field and the name will be checked against online object  databases  e g  SIMBAD   If the name is successfully resolved  then  the OT will insert the position in R A  and Dec   in the appropriate  lower fields  Be sure to check the positional information generated by  the n
33. ting        C Resources   9       4 Field Sources       OMC 1 omc 1        Uranus Uranus          Calibrator  J0607 085      Calibrator  J0607 085    9     1 Instrument Setup             4 Observing Parameters     OMC simple   3 OMCcal Simple     D Simple      3 AmplitudeCalParameters       Additional General SB Setup and Observing Groups Creation    In order to complete a functioning SB  some additional general parameters must be  set  and the Targets associated with Observing Groups within the SB     25     Select the SB to be finished off  Ensure that the    Forms    tab of the    Editors     panel has been selected  and click on the    Scheduling Block    entry in the    Project  Structure    panel  with the yellow clock icon      26  Set the remaining top level SB parameters  In the    Editors    panel  a number of    remaining SB parameters are presented  These may be set as follows  skipping  fields that are greyed out and not changeable     e    Basics     The    SchedBlock Name    field was already set above    e    Control        Array Type    should be left with the default value of     TWELVE M       e    Unit Dependencies     This is not currently used    e    Preconditions     These mauy all be left with the default settings for  the current purposes    5  SchedBlock   The    Standard Mode    checkbox should be checked   The    Mode Name  field should be set to    Standard Interferometry      The    Mode Type  should be  User   The    Execution Count      Indefi
34. try under the    Observing Parameters  parent item  Click on this new entry    16  Rename the  Observing Parameter  entry and set up the relevant  parameters  As for other entries in the    Project Structure  panel  right  clicking  on the new    ScienceParameters    entry will allow it to be renamed  This can also  be done by entering a suitable string in the    Science Parameters Name  field in  the    Observing Parameters  pane of the    Forms    tab of the    Editors    window  For  the presented example of a    ScienceParameters    entry  this will be renamed     OMC simple   and the    Representative Bandwidth  and    Representative  Frequency  fields set to at least roughly reflect the values already entered earlier  for this example     Representative Bandwidth  will be chosen to be 2 0 GHz  and  the    Representative Frequency  set to be 86 8 GHz  these numbers do not have to  be exact  as they are included principally to allow simple characterization of the  project with reference to the original PI source proposal  and this 1s not a factor  for the purposes of CSV test SBs   Some numbers also need to be entered for   Sensitivity Goal  and  Integration Time  for the program to be regarded as valid     so values of 1 Jy and 20 0 min will be chosen in order to be sufficiently generous  as to ensure that the SB runs to full completion  The    Advanced Parameters    pane  may be left minimized  and will not be discussed here     The    Observing Parameters    part of th
35. ue of 0 0 for this case  The  contents of the  Sub Scan Duration  will be discussed below  step 10      9  Switching  The switching type may be left as    NO SWITCHING  for now  This  will result 1n the rest of this pane being greyed out    Correlator Configuration and Sub Scan Duration  At the time of writing  Atmospheric Phase correction is not being performed  The field    Atmos  Phase  Correction Data To Save    should therefore always be set 10   AP UNCORRECTED     In Baseline Correlator mode  it 15 necessary to set the  correlator    Dump Duration    time  This should be set to a multiple of 16  milliseconds  0 0016 s   in practice  this should normally be  gt  48 or 96 ms  For    10     this worked example  a value of 1 00800 s will be adopted  The    Channel Average  Duration    is the period of time over which the channel average region will be  averaged  and must therefore always be an integer multiple of the    Dump  Duration     For the presented example  a    Channel Average Duration    of 2 01600  s will therefore be adopted  The    Integration Duration    must also always be an  integer multiple of the    Channel Average Duration   so for the presented example   a value of 6 04800 s will be adopted  The    Sub Scan Duration    field entry  in the  Spectral Spec pane  must also always be an integer multiple of the    Integration  Duration    field entry  for the presented example  a value of 30 24000 s will be  adopted  At this point  the first three panes of th
    
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