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1.   Add 100ul standard cytokines or samples  to each well  Incubate arrays at room temperature for 1 2 hour   Longer    incubation time is preferable for higher signals     Note  GCF samples can be either eluted immediately or stored frozen  and eluted subsequently with same ratio of sample diluent buffer  We  recommend using 50 to 100 ul of original or diluted serum  plasma   conditioned media  or other body fluid  or 50 500 ug ml of protein for  cell and tissue lysates  Cover the incubation chamber with adhesive film  during incubation if less than 70 ul of sample or reagent is used     Note  This step may be done overnight at 4  C for best results     8  Wash   e Decant the samples from each well  and wash 5 times  5 min each   with 150 ul of 1x Wash Buffer I at room temperature with gentle    Quantibody Human Periodontal Disease Array 1 9    shaking  Completely remove wash buffer in each wash step  Dilute  20x Wash Buffer I with H O     e  Optional for Cell and Tissue Lysates  Put the glass chip with frame  into a box with Ix Wash Buffer I  cover the whole glass slide and  frame with Wash Buffer I   and wash at room temperature with  gentle shaking for 20 min     e Decant the Ix Wash Buffer I from each well  wash 2 times  5 min  each  with 150 ul of 1x Wash Buffer II at room temperature with  gentle shaking  Completely remove wash buffer in each wash step   Dilute 20x Wash Buffer II with H O     D  Incubation with detection antibody cocktail and wash     9  Reconstitute the
2.   QAM CAA 3000   e 120 cytokines  QAH CAA 2000  QAM CAA 2000   e  0 cytokines  QAH CAA 1000  QAM CAA 1000   e 60 cytokines  QAH ANG 1000  QAM CX T Q2000   e 40 cytokines  QAH INF 3  QAH CHE 1  QAH GF 1  QAH REC 1  QAH CYT 4  QAH   CY T 5  QAH CXT 6  QAH CYT 7  QAM INF 1  QAM CYT 4  QAM CYT 5  QAM CYT 6   e 30 cytokines  QAH ANG 2  QAH ANG 3  QAM INT 1000  QAR CYT 3  QAM CHE 1   e 20 cytokines  QAH CYT 1  QAH CYT 2  QAM CYT 1  QAM CYT 2  QAM CYT 3  QAM   INT 1  QAH TH17 1  QAM TH17 1   e 10 cytokines  QAH TH 1  QAH INF 1  QAH INF 2  QAH ANG 1  QAH MMP 1  QAH   ADI 1  QAM INT 2  QAR CYT 1  QAR CYT 2  QAR INF 1  QAN CYT 1  QAP CYT 1   QAH IGF 1   e less than 10 cytokines  QAH ISO 1  QAH ADI 2  QAP CYT 1  QAM ISO G1    Purpose based selection     Custom Arrays    e Choose from over 500 cytokine pool  Any kind  Any number   e Order slide only or full service in house   e Desired marker not in our pool  No problem  For certain developmental fee  we may be able  to add the marker to your panel if the paired antibodies are available on the market     Check our website regularly for updated Quantibody   products    Quantibody Human Periodontal Disease Array 1 20    Note   Quantibody    is the trademark of RayBiotech  Inc     Cytokine protein arrays are RayBiotech patent pending technology     This product is intended for research only and 1s not to be used for clinical  diagnosis  Our produces may not be resold  modified for resale  or used to  manufacture commercial products without 
3.   c  0 00   II  General Considerations               nn  A  Preparation of Samples                 ccc cece eee eens  B  Handling Glass Chips      ee  C  Incubation        nn nn nn nn nem enn  IVe PET OUOC Ole a  A  Complete Air Dry the Glass Chip                    B  Prepare Cytokine Standard Dilutions                  O o WO    N N N ND DW NA W e    C  Blocking and Incubation                       0006   D  Incubation with Detection Antibody Cocktaul        E  Incubation with Cy3 Equivalent Dye Streptavidin     10    sy        F  Fluorescence Detection         eee 11   G  Data Analysis          0    cece cece ccc eee cece eee n eee eees 12  V  Cytokine Array Map  amp  Standard Curves                 13  VI  8 Point Standards            eee nn 14  VII  System Recovery          0  ccc cece cece ence eee eee necnes 15  VIII  Quantibody   Q Analyzer             cecceceeceeceueerenees 16  IX  Troubleshooting Guide    17  X  Select Quantibodv Publications                 00000   18  XI  Experimental Record Form    0    cece ceca es 19  XII  How to Choose Quantibodv Products                   20    Quantibody Human Periodontal Disease Array 1 2    I  Introduction    Periodontal disease 1s a gum disease  The symptom ranges from simple gum  inflammation  gingivitis  to periodontitis which results in major damage to  the soft tissue and bone that support the teeth  In the worst cases  teeth are  lost  Because of the irreversible nature of periodontitis  early diagnosis and  treatmen
4.  detection antibody by adding 1 4 ml of Sample Diluent  to the tube  Spin briefly     10  Add 80 ul of the detection antibody cocktail to each well  Incubate at    room temperature for l 2 hour   Longer incubation time is preferable  for higher signals and backgrounds     11  Decant the samples from each well  and wash 5 times with 150 ul of  Ix Wash Buffer I and then 2 times with 150 ul of Ix Wash Buffer II at  room temperature with gentle shaking  Completely remove wash buffer  in each wash step     E  Incubation with Cy3 equivalent dye  Streptavidin and wash    12  After briefly spinning down  add 1 4 ml of Sample Diluent to Cy3  equivalent dye conjugated streptavidin tube  Mix gently     13  Add 80 ul of Cy3 equivalent dye conjugated streptavidin to each well     Cover the device with aluminum foil to avoid exposure to light or  incubate in dark room  Incubate at room temperature for 1 hour     Quantibody Human Periodontal Disease Array 1 10    14  Decant the samples from each well  and wash 5 times with 150 ul of  Ix Wash Buffer I at room temperature with gentle shaking  Completely  remove wash buffer in each wash step     F  Fluorescence Detection    15  Disassemble the device by pushing clips outward from the slide side   Carefully remove the slide from the gasket      Be careful not to touch  the surface of the array  side                       16  Place the slide in the slide Washer Dryer  a 4 slide holder centrifuge  tube   add enough 1x Wash Buffer I  about 30 ml  
5.  l    Image scan   laser scanner     l    Data extraction 455 433 443 442 121 122 132 119    2 1 3 2 89 88 90 91     GeneP1x etc   ee aeons    55 54 57 56 188 178 189 190    J    Data computation   Q Analyzer     l    Final Result   pg ml                                            Quantibody Human Periodontal Disease Array 1 12    V  Cytokine Array Map  amp  Standard Curves       QAH PDD 1 Standard Curves    1e 5   CRP   IFNg   IL 1a   if   W     IL 1b   1e 4 A l fy IL 2        omen ae  IL 4   IL 6   TA    IL 8   A       IL 10   1e 3 A Lars   4 IL 12    IL 17   MIP 1a   H  z MMP 9   1e 2   wy id es MMP 13    OPG    Signal Intensity    OPN  Osteoactivin        RANK  1e 1 TGFb1  TNFa       107 10   101 102 103 104 105 106    Concentration  pg ml     Quantibody Human Periodontal Disease Array 1 13    VI  8 Point Standards   After reconstitution of the lyophilized cytokine standard mix  the 8 point  cytokine concentration used for generating the standard curve of a given  antigen is listed below  The detection sensitivity of each protein in one  experiment is user dependent  Try our array specific Quantibody Q Analyzer  to see your Limit of Detection  LOD    Section VIII      Serial standard concentration  pg ml        o   s e aera a  w  o u a e om im  3 o  pe ee ea  ao   pO IA  Ce po p e e e a s an    IL 4 2 000    oS     Ht    Wl N    See ea a arf  ee a m  n  o u  a e  om a o  we   o u  a e on o   o  mes   o u  a m  on m  as o    E AI  TG    e p ar f oa   ae   aer   a  ox  o r 
6.  slide bag to the back of the slide with a permanent  marker before discarding the slide bag  Once the slide is disassembled   you might not have enough info to distinguish one slide from the other     C  Incubation    Completely cover array area with sample or buffer during incubation   Avoid foaming during incubation steps    Perform all incubation and wash steps under gentle rotation    Cover the incubation chamber with adhesive film during incubation   particularly when incubation is more than 2 hours or  lt 70 ul of sample  or reagent 1s used    Several incubation steps such as step 6  blocking   step 7  sample  incubation   step 10  detection antibody incubation   or step 13  Cy3  equivalent dye streptavidin incubation  may be done overnight at 4  C   Please make sure to cover the incubation chamber tightly to prevent  evaporation     Quantibody Human Periodontal Disease Array 1 7    IV  Protocol    A  Completely air dry the glass chip    1  Take out the glass chip from the box  and let it equilibrate to room  temperature inside the sealed plastic bag for 20 30 minutes  Remove  slide from the plastic bag  peel off the cover film  and let it air dry at  room temperature for another l 2 hours     Note  Incomplete drying of slides before use may cause the formation of     comet tails         B  Prepare Cytokine Standard Dilutions    Note  There is only one vial of standard provided in the two slide kit   which is enough for making two standard curves  Reconstitute the  lyo
7. 35 6   829 833    4  Souquiere S  et al  T Cell tropism of simian T cell leukaemia virus type 1 and cytokine  profiles in relation to proviral load and immunological changes during chronic infection  of naturally infected mandrills  Mandrillus sphinx   J Med Primatol  2009  38 4  279   89    5  Sharma  et al  Induction of multiple pro inflammatory cytokines by respiratory viruses  and reversal by standardized Echinacea  a potent antiviral herbal extract  Antiviral  Research  2009  83 2 165 170     6  Altamirano Dimas  et al  Echinacea and anti inflammatory cytokine responses  Results  of a gene and protein array analysis  Pharmacuetical Biology  2009  47 6   500 508     7  Cheung  et al  Cordysinocan  a polysaccharide isolated from cultured Cordyceps   activates immune responses in cultured T lymphocytes and macrophages  Signaling  cascade and induction of cytokines  Journal of Ethonopharmacology  2009  124 1   61   68     8  Du  et al  P2 380  Identification and characterization of human autoantibodies that may  be used for the treatment of prion diseases  Alzheimer s and Dementia  2009  4 4    T484 T484     9  Van Rossum et al  Granulocytosis and thrombocytosis in renal cell carcinoma  a pro   inflammatory cytokine response originating in the tumour  Neth J Med  2009   67 5   191 4    10  Zhai  et al  Coordinated Changes in mRNA Turnover  Translation  and RNA Processing    Bodies in Bronchial Epithelial Cells following Inflammatory Stimulation  Molecular  and Cellular Biolo
8. Quantibodv  Human Periodontal Disease    Array 1   Quantitative measurement of 20 human periodontal disease  associated cytokines       Patent Pending Technology    User Manual  Version Oct 2012     Cat   QAH PDD 1       RayBiotech  Inc     We Provide You With Excellent  Protein Array Systems and Service                         Tel  Toll Free  1 888 494 8555 or 770 729 2992  Fax  1 888 547 0580   Website www ravbiotech com Email  info raybiotech com    CRP  IFNy  IL la  IL 1B  IL 2  IL 4  IL 6  IL 8  IL   10  IL 12  IL 17  MIP la  MMP 9  MMP 13  OPG   OPN  Osteoactivin  RANK  TGFB1  TNFa   One standard glass slide is spotted with 16 wells of    identical cytokine antibody arrays  Each antibody is  arrayed in quadruplicate     Cytokine Detected   20     Detection Method   Fluorescence with laser scanner  Cy3 equivalent dye    Sample Volume   50     100 ul per array  Reproducibility   CV  lt 20     See Section V  For Array Map    e0000000 e0000000    e0000000 e0000000    00000000 00000000    o o o o o o          e0000000 e0000000    o0000000 00000000       o0000000 00000000      Fluor dye  cy3 equivalent   Biotin Streptavidin complex  Detect antibody  Cytokine  Capture antibody        Glass Slide Support    Quantibody Human Periodontal Disease Array 1 1    TABLE OF CONTENTS    lI    QVEEeW i  TAGE OCUICTION s esaeen roepen en nr Mi ia  How It Works srerintenkatirza nien nista saat   II  Materials Provided          ee nnnennn nn mnn  Additional Materials Required                
9. aaa   aor tin  5  row  meen  OTe Tatas  ot   385   Toa   ai o  TGT 0 BT AZZAR o o aa o  me jo IF       Quantibodv Human Periodontal Disease Array 1 14    VII  System Recovery   The antibody pairs used in the kit have been tested to recognize their specific  antigen  The spiking recovery rate of the cytokines by the kit in 2x diluted  Human serum and 2x diluted Human cell culture media  CM  is listed in the  following table     The kasi recoverv rate for culture media and serum    BU ed e Kos  Tara lm mar Tajna  mar er   a  sar aera  ar or fm    a  w ejja  mr KM    IL 1f 1 000 631 63  513 51   IL 2 2 000 2 536 105    49 2 152 105   IL 4 1 000 1 244 123  10 1 361 135   IL 6 1 000 2 436 7196 2  1 023 100   IL 8 1 000 1 156 100  956 95   IL 10 1 000 726 72  l 590 59   IL 12 1 000 1 198 120  2 857 85   IL 17 5 000 3 461 69  2 3 255 65   MIP 1a 5 000 7 134 140  3 934 79   MMP 9 5 000 2 587 51    3 368 4 067 14   MMP 13 10 000 129 9 919 98   lt   6 128 61   OPN 50 000 47 043 92    203 28 861 57   Osteoactivin   5 000 4 993 98    2 493 4 538 41   RANK 25 000   68 19 119 76  21 17 503 70     Quantibody Human Periodontal Disease Array 1 15    VIII  Quantibody   Q Analyzer    Quantibody Q Analyzer is an array specific  Excel based program  However   it is not a simple calculation macro as it contains sophisticated data analysis     Key features    e Simplicity  Easy to operate and requires no professional training  With a  simple copy and paste process  the cytokine concentration 1s det
10. can  then be visualized through the addition of the streptavidin labeled Cy3  equivalent dye using a laser scanner  Unlike the traditional ELISA   Quantibody products use array format  By arraying multiple cytokine  specific capture antibodies onto a glass support  multiplex detection of  cytokines in one experiment is made possible     In detail  one standard glass slide is spotted with 16 wells of identical  cytokine antibody arrays  Each antibody  together with the positive controls  is arrayed in quadruplicate  The slide comes with a 16 well removable gasket  which allows for the process of 16 samples in one slide  Four slide chips can  be nested into a tray  which matches a standard microplate and allows for  automated robotic high throughput process of 64 arrays simultaneously  For  cytokine quantification  the array specific cytokine standards  whose  concentration has been predetermined  are provided to generate a standard  curve for each cytokine  In a real experiment  standard cytokines and  samples will be assayed in each array simultaneously through a sandwich  ELISA procedure  By comparing signals from unknown samples to the  standard curve  the cytokine concentration in the samples will be determined     Quantibody   array kits have been confirmed to have similar detection  sensitivity as traditional ELISA  Our current high density Quantibody kits  allow scientists to quantitatively determine the concentration of 320 human  or 160 mouse cytokines in a single exp
11. during incubation  neighboring wells  usage    Inadequate standard reconstitution or   Reconstitute the lyophilized standard well at   Improper dilution the room temperature before making serial   Poor standard dilutions  Check pipettes and ensure proper  curve serial dilutions    Inadequate detection Increase laser power that the highest  standard concentration for each cytokine  receives the highest possible reading yet  remains unsaturated     Use freeze thawed cytokine standards   Always use new cytokine standard vial for  new set of experiment  Discard any leftover     Overexposure Lower the laser power    Dark spots Completely remove wash buffer in each  Hich wash step   18 Insufficient wash Increase wash time and use more wash  background buffer    Slide is allowed to dry out Don   t dry out slides during experiment                    Quantibody Human Periodontal Disease Array 1 17    X  Select Quantibody Publications    1  Stechova  et al  Influence of Maternal Hyperglycaemia on Cord Blood Mononuclear  Cells in Response to Diabetes associated Autoantigens  Scandinavian Journal of  Immunology  2009  70 2  149 158    2  Willingham  SB et al  NLRP3  NALP3  Cryopyrin  facilitates in vivo caspase 1  activation  necrosis  and HMGBI release via inflammasome dependent and    independent pathways  J Immunol  2009  183 3  2008 15    3  El Karim et al  Neuropeptides Regulate Expression of Angiogenic Growth Factors in  Human Dental Pulp Fibroblasts  Journal of Endodontics  2009  
12. eriment  This is not only one of the  most efficient products on the market for cytokine quantification  but makes  it more affordable for quantification of large number of proteins   Simultaneous detection of multiple cytokines undoubtedly provides a  powerful tool for drug and biomarker discovery     Quantibody Human Periodontal Disease Array 1 4    How It Works    Array support YYYYY li a  Samples    l o  Incubation of Sample    yyy With arrayed antibody   1 2 hr              Supports  Cocktail of 4  Biotin Ab XX      M    k  KK Incubation with      1 2 hr       Biotinylated Ab       Labeled       IN AW AN 4    treptavidi  eee K K Incubation with      1 hr    vv Cy3 equivalent dye    Labeled  streptavidin    Jose 7 Detection of signals    lat    Data analysis and graph    Quantibody Human Periodontal Disease Array 1 5    II  Materials Provided    Upon receipt  all components of the Quantibody   Array kit should be stored  at  20  C  At  20  C the kit will retain complete activity for up to 6 months   Once thawed  the glass chip  cytokine standard mix  detection antibody  cocktail and Cy3 equivalent dye conjugated Streptavidin should be kept at      20  C and all other components may be stored at 4 C  The entire kit should be  used within 6 months of purchase     Components    Item Description 1 Slide kit 2 Slide kit  Quantibody   Array Glass Chip   Sample Diluent   20X Wash Buffer I   20X Wash Buffer II   Lyophilized cytokine standard mix    Detection antibody cocktail   C
13. ermined    e Outlier Marking  amp  Removing  The software can automatically mark and  remove the outlier spots for more accurate data analysis   e Normalization  The program allows for intra  and inter slide  normalization for large number of samples    e Iwo Positive Controls  The program takes the two positive controls in  each array for normalization    e Two Analytical Algorithms  Users can choose either linear regression or  log log algorithms to meet their analytical needs    e Two Data Outputs  standard curves and digital concentration    e User Intervention  The program allows for user manual handling of  those outliers and other analytical data    e Lower and Upper Limits Determination  The program automatically  marks out the values below or above the detection range    e Standard Deviation  The program outputs the standard deviations of the  quadruplicate spots for data accuracy     e Analytical Tips  Q Analyzer analysis tips are included in the program     Quantibody Human Periodontal Disease Array 1 16    IX  Troubleshooting guide    Inadequate detection Increase laser power and PMT parameters    Inadequate reagent volumes or Check pipettes and ensure correct  improper dilution preparation    Weak Signal change sample incubation step to overnight  sample sample    Improper storage of kit Store kit as suggested temperature  Don   t  freeze thaw the slide   Arrays are not completed covered by   Completely cover arrays with solution  Uneven signal   reagent    film 
14. gy  2008  28 24   7414 7426     11 Gao  et al  A Chinese herbal decoction  Danggui Buxue Tang  activates extracellular  signal regulated kinase in cultured T lymphocytes  FEBS Letters  2007  581 26   5087   5093   This reference validates mulitplex ELISA results for several analytes with  standard ELISA test results      12  Piganelli  et al  Autoreactive T cell responses  new technology in pursuit of an old  nemesis   Editorial Review  Pediatric Diabetes 2007  8  249 251    Quantibody Human Periodontal Disease Array 1 18    XI  Experiment Record Form    Date   File Name     Laser Power     PMT     Well No  Sample Name    2   s   Q  H  ili  i  E  E    elelee        Quantibody Human Periodontal Disease Array 1 19    XII  How to Choose Quantibody   Products     Species based selection     e Human   QAH     e Mouse   QAM     e Rat  QAR CYT 1  QAR CYT 2  QAR CYT 3  QAR INF 1  e Porcine  QAP CYT 1   e Non Human Primates  NHP   QAN CYT 1    Function based selection     e    THI TH2 THI17 Array  QAH TH 1  QAH TH17  QAM TH17   e Inflammation Arrays  QAH INF 1  QAH INF 2  QAH INF 3  QAM INF 1  QAR INF 1  e Angiogenesis Arrays  QAH ANG I  QAH ANG 2  QAH ANG 3  QAH ANG 1000   e Chemokine Arrays  QAH CHE 1  QAM CHE 1   e MMP Array  QAH MMP 1   e Immunoglobin Isotype Array  QAH ISO 1  QAM ISO G1    Cytokine Number based selection     e 320 cytokines  QAH CAA 7000   e 280 cytokines  QAH CAA 6000   e 240 cytokines  QAH CAA 5000   e 200 cytokines  QAH CAA 4000   e 160 cytokines  QAH CAA 3000
15. notransferase   Because of the limited availability of sample volumes   most of the previous research only worked on one or several targets  The  traditional method for cytokine detection and quantification is through the  use of an enzyme linked immunosorbent array  ELISA   While the  traditional method works well for a single protein  the overall procedure 1s  time consuming and requires a lot of sample  Take the advantage of  advancement in microarray technology over the last decade  Raybiotech  has  pioneered the development of cytokine antibody arrays  which has now been  widely applied in the research community with hundreds of peer reviewed  publications such as in Cell and Nature     Quantibody Human Periodontal Disease Array 1 3    Quantibody   array  our quantitative array platform  uses the multiplexed  sandwich ELISA based technology and enables researchers to accurately  determine the concentration of multiple cytokines simultaneously  It  combines the advantages of the high detection sensitivity   specificity of  ELISA and the high throughput of the arrays  Like a traditional sandwich   based ELISA  it uses a pair of cytokine specific antibodies for detection  A  capture antibody is first bound to the glass surface  After incubation with the  sample  the target cytokine is trapped on the solid surface  A second biotin   labeled detection antibody is then added  which can recognize a different  isotope of the target cytokine  The cytokine antibody biotin complex 
16. philized standard within one hour of usage  If you must use the  standard for two different days  store only the Std1 dilution at  80   C     Prepare serial dilution of cytokine standards       100ul 100ul 100ul 100ul 100ul 100ul    AS OSOS TS OS GD  amp   Add 500ul pa  Sample Diluent    200ul 200ul 200ul 200ul 200ul 200ul 100ul  Vial Labels Stdi Std2 Std3 Std4 Std5 Std6 Std7 CNTRL    2  Reconstitute the Cytokine Standard Mix  lyophilized  by adding 500u1  Sample Diluent to the tube  For best recovery  always quick spin vial    prior to opening  Dissolve the powder thoroughly by a gentle mix   Labeled the tube as Std      Quantibody Human Periodontal Disease Array 1 8    3  Label 6 clean microcentrifuge tubes as Std2 to Std7  Add 200ul Sample  Diluent to each of the tubes     4  Pipette 100ul Stdl into tube Std2 and mix gently  Perform 5 more  serial dilutions by adding 100ul Std2 to tube Std3 and so on     5  Add 100ul Sample Diluent to another tube labeled as CNTRL  Do not  add standard cytokines or samples to the CNTRL tube  which will be  used as negative control  For best results  include a set of standards in  each slide     Note  Since the starting concentration of each cytokine is different  the  serial concentrations from Stdl to Std7 for each cytokine are varied which  can be found in section VI     C  Blocking and Incubation    6  Add 100ul Sample Diluent into each well and incubate at room  temperature for 30 min to block slides     7  Decant buffer from each well
17. t is critical  Clinical measurements include probing pocket depth   bleeding on probing  clinical attachment loss  plaque index  and radiographs  etc  While such methods are useful for the staging of periodontal disease   they are only indicators of previous disease status rather than the present  disease activity  There is a need for the development of new diagnostic tests  that can reflect the active disease state  which will be useful for disease  diagnosis  prognosis  and monitoring the effectiveness of periodontal  therapy  Gingival crevicular fluid  GCF  is a tiny amount bodily fluid  transuded from periodontal tissues into the gingival crevice and periodontal  pocket  The constituents of GCF originate from serum  gingival tissues  and  from both bacterial and host response cells  which reflect the biology and  physiology of the local tissues  Meanwhile  GCF could be easily collected by  noninvasive means such as paper strips  absorbent points and micropipettes   As a result  proteins in GCF have been the ideal and hot targets pursued for  candidate disease specific biomarker research for the last several decades     Most analyzed periodontal disease related proteins in GCF are inflammatory  cytokines  eg  IL Ib  IL 6  IL 8  IL 10  IL 12  IFNg  TNFa  and CRP    matrix metalloproteinases  eg  MMP 8  MMP 9  and MMP 13  and their  inhibitors  TIMPs   bone metabolism related cytokines  eg  OPG  OPN   RANK  and RANKL   and enzymes  eg  alkaline phosphatase and aspartate  ami
18. to cover the whole  slide  and then gently shake at room temperature for 15 minutes   Decant Wash Buffer I  Wash with Ix Wash Buffer II  about 30 ml   with gentle  and gently shake at room temperature for 5 minutes     17  Remove water droplets completely by one of the following ways   e Put the glass chip into the Slide Washer Dryer  and dry the glass  chip by centrifuge at 1 000 rpm for 3 minutes without cap   e Or  dry the glass chip by a compressed N  stream   e Or gently apply suction with a pipette to remove water droplets  Do  not touch the array  only the sides     18  Imaging  The signals can be visualized through use of a laser scanner  equipped with a Cy3 wavelength such as Axon GenePix  Make sure  that the signal from the well containing the highest standard  concentration  Stdl  receives the highest possible reading  yet remains  unsaturated     Note  In case the signal intensity for different cytokine varies greatly in    the same array  we recommend using multiple scans  with a higher PMT  for low signal cytokines  and a low PMT for high signal cytokines     Quantibody Human Periodontal Disease Array 1 11    G  Data Analysis    19  Data extraction can be done with most of the microarray analysis  software  GenePix  ScanArray Express  Array Vision  or MicroVigene    For quantitative data analysis  our Quantibody   Q Analyzer software is  available  It gives visual output as well as digital values  More  information can be found in section VIII     Experiments   
19. written approval by RayBiotech   Inc     Under no circumstances shall RayBiotech be liable for any damages arising  out of the use of the materials     Products are guaranteed for three months from the date of purchase when  handled and stored properly  In the event of any defect in quality or  merchantability  RayBiotech   s liability to buyer for any claim relating to  products shall be limited to replacement or refund of the purchase price     This product is for research use only          2012 RayBiotech  Inc     Quantibody Human Periodontal Disease Array 1 21    
20. y3 equivalent dye conjugated Streptavidin  Slide Washer Dryer   Adhesive device sealer   Manual    aay  sy    2  3  4  5  6  7  8  9       p lt   Co      See Section VI for detailed cytokine concentrations after reconstitution     Additional Materials Required   Orbital shaker   Laser scanner for fluorescence detection  Aluminum foil   Distilled water   1 5ml Polypropylene microcentrifuge tubes    Quantibody Human Periodontal Disease Array 1 6    HI     General Considerations    A  Preparation of Samples    GCF collection was most commonly performed using paper strips  inserted into the gingival crevice until mild tissue resistance is felt  A  sampling period of 30s has been adopted by most investigators   Subsequently the volume of GCF collected on the paper strip 1s  quantified by an electronic device  eg  Periotron 8000   GCF samples  can be either eluted immediately or stored frozen and eluted  subsequently with sample diluent buffer    We recommend the following parameters for other samples    50 to 100 ul of original or diluted serum  plasma  cell culture media  or  other body fluid  or 50 500 ug ml of protein for cell and tissue lysates     B  Handling glass chips    Do not touch the surface of the slides  as the microarray slides are very  sensitive  Hold the slides by the edges only    Handle all buffers and slides with latex free gloves    Handle glass chip in clean environment    Because there 1s no barcode on the slide  transcribe the slide serial  number from the
    
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