4. Kobe Plot I
Contents
1. Sfenario 01 s enario o1 Si P Scenario 02 a5 904 13 9392 13 42 99 1241 9 9 fi 10 JAUR A J F Fmsy Scenario 02 a5 9034 13 72 E 4 6 SB SBmsy SB SBmsy 17 3 Editing the initial plot points and lines IOTC 2014 WPTT16 53 Rev_2 Then users will see the graph setting menu two types Users can adjust various parameters to create user s desirable plot Below is the 1 type for points and lines For details on this menu refer to single plot page 11 12 as the contents are same rap ettings Points and lines Trajectory and Phases Number of Years fa Line Style Title Red Line After None Arrow Multiple Kobe plots IY All Years Select Years to Display IY 1970 M 1974 M 1971 M 1975 M 1979 M 1983 M 1987 IY 1972 M 1976 M 1980 M 1984 M 1988 M 1973 M 1077 M 1981 M 1985 M 19890 vy Femy o if 1 Font Size 20 sii Reset Change titles of AY axis to other names ae Mark Size fio A Mark Font Size J10 Font Size is E Color w Width li Style Sota Font Size 10 W l Target Reference Point Target Reference Legend SB tarzet 1 0 x SBmsy F target 1 0 x Fmsy Color a Width ji Style Sota Font Size 10 z 4 Editing trajectories and phases cmt Graph setting menu for points and line In the 2 sheet next age users can edit trajectories and phase using various editorial2. Window Help 4 After the path of R is assigned the first window will appear as below KobePlot Ver3 2014 a gt plot I Stock status trajectory Kobe plot I Risk assessment diagram Help If users want to make stock status trajectory plots click Kobe Plot I If users want to make the risk assessment diagrams click Kobe Plot II 4 Kobe Plot I stock status trajectory There are three sub menus on Kobe plot I i e 1 menu for one single plot with a confidence surface 2 for multi plots without confidence surface and 3 the new option in the 3 version for multi comparisons of a particular point of the Kobe plot normally final year among different stock assessment results for example EF KobePlot Ver3 2014 mm x Kobe plot I Single trajectory with a confidence surface IOTC 2014 WPTT16 53 Rev_2 4 1 A single plot with a confidence surface 1 How to create the input data To create the input data make a CSV file see below 1 e year column 1 Spawning Stock Biomass SB or Total Biomass B ratio SB SBmsy or B Bmsy column 2 and F ratio F Fmsy column 3 If users want to create the confidence surface add 2 columns and put results from MCMC or bootstrap 1 e SB ratio SB SBmsy or B ratio B TBmsy column 4 and F ratio F Fmsy column 5 Columns 1 3 Columns 4 5 Input data Input data confidence a single plot surface trajectory MCMC bootstrap
3. Move phase name label Move Limit Target XY label Move PieChart Zoom Scroll Copy Save As Save Size Load Size SB SBmsy 24 IOTC 2014 WPTT16 53 Rev_2 3 Moving phase names labels 4 Moving Limit Target Limit Reference Point and 5 Moving Pie Chart Users can apply these function in the similar way as in Moving contour percentage labels 6 Scrolling Click the right button of the mouse in the plot area then the context menu will appear Select and tick Scroll then drag the cursor and scroll the plot area as users like Edit Scen rio Labels Move Contour 6 label Move phase name label Move Limit Target AY label Move PieChat Zoom gt Save Size Load Size 7 Zooming the plot area Click the right button of the mouse in the plot area then the context menu will appear Select and tick Zoom Then drag the cursor to the area users want to zoom then that area will be highlighted with slash lines shades To go back to the original plot click the left button then drag towards the left upper corner Then users will get back the original plot 25 Edit Scenario Labels Move Contour label Move phase name label Target AY label Move PieChart Zoom lt Scroll Move Limi Copy Save As Save Size Load Size 99 8 8987 26 89 Paes 26 IOTC 2014 WPTT16 53 Rev_2 SSB SSBmsy IOTC 2014 WPTT16 53 Rev_2 8 S
4. point lower upper feta vat owe om em on owe os am om om ow eet ee F Fmsy 0 2 4 6 SB SBmsy Initial plot 20 IOTC 2014 WPTT16 53 Rev_2 Graph Settines Points and lines Phases Ams W Title Comparisons among different stock assessments result Min Max Increment j F Fmsy E Poat Sizes 20 a Reset e Reference Pi Change titles of XY axis to other names Font Size fis sii Limit Reference Legend SB limit 0 6 x SBmsy 13xFmsy Legend IY Center marker Color a Width fi Style Solid Font Size fio aii Iw Target Reference Point Target Reference Legend W Cross line XY confidence interval SB targzet 1 0 x 5Bmsy Y 1 0 a F target 1 0 xF Color E Width 1 Style Sotid ia Y F target x Fmsy I Circle name OK Cancel Graph Settings Points and lines Phases Phase color Line width of XY axis Color A Width 5 Style Sotia M Phase name Label M Overfished Horizontal M Overfishing Verica gt Recovering Horizontal gt l Safe zone Horizontal Font Size 12 B E OK Cancel Graph settings two windows 21 IOTC 2014 WPTT16 53 Rev_2 Comparisons among 4 different stock assessments results 0 1 2 3 4 9 6 7 SB SBmsy Edited multiple comparison Kobe plots after graph settings 4 4 Common functions editing and moving labels
5. table format so that anyone can easily understand the meanings of the matrix We applied spatial contour estimation techniques used in our marine GIS Marine Explorer Reference pomt and Alternative catch projections relative to 2010 and probability 0 projection timeframe of violating MSY reference pots 60 80 85 90 100 110 120 140 Boos Busy 45 4g 50 33 37 62 67 1 Foo3 gt Fussy 11 47 34 38 66 71 76 82 B020 Busy 18 51 59 66 74 82 amp 7 91 Fago gt Fuesy lt l 49 61 70 82 89 91 96 1 How to create the input data To create the input data make one CSV file based on the risk matrix for 10 years as below 1 e Colum 1 percentage increase or decrease from the current catch status quo Columns 2 11 projected years and corresponding risk probabilities by percentage Y axis This format is the diagrams for both SSB or TB ratio and F ratio Please note that colors are not needed Here colors are used only for the illustration purpose to understand the risk probability levels Example from Indian Ocean albacore stock and risk assessment Jaton ein ton ston feos atin ein wnt oti ewt 201 2012 2013 2014 2015 2016 2017 2018 2019 2020 29 IOTC 2014 WPTT16 53 Rev_2 2 How to get the input data into the software Click Kobe Plot II Then users will see the empty window see right below Then click file open then go to the folder where user s CVS file is located and import t
6. E Width 1 Font Size 10 zz 13 IOTC 2014 WPTT16 53 Rev_2 5 Editing the initial plot trajectory confidence surface pie chart and phase In the 2 sheet below users can edit trajectory confidence surface pie chart and phase using various editorial options and users can create desirable plots PieChart option By checking the PieChart button below users can add the pie chart showing composition of 4 phases areas in the confidence surface After users finish the initial graph setting push OK button then users will see the edited Kobe plot next page Graph Settings Points and lines Trajectory confidence surface and phase Trajectory Line a Style Arrow Phase color W Show Plot Points Style Circle Line width of XY axis Color E Width 3 Style Sotid Phase name Label W Show Confidence Surface I Show Contour Labels W Overfished Horizontal we y w 75 Iv 5 E Iv 75 dee Won l Recovering Horizontal Safe zone Show PieChart Composition of 4 phases N 14 IOTC 2014 WPTT16 53 Rev_2 F Sinele plot sinele plot samples ae lolx File Edit Window Help SB SBmsy Edited Kobe plot after graph settings 4 2 Multiple plots without confidence surface This option will produce 2 or more Kobe plot stock status trajectories 1 How to create the input data To create the input data make one CSV file a
7. etc Col_1 2 3 4 5 z Beano Fean 1995 1 911 0 467 0 978 1 289 1 065 1 101 1 959 1 021 1 198 0 912 1 072 1 338 1 692 0 997 1 258 1 024 0 850 0 632 X Y X Y 0 778 1997 1605 0 613 1998 1485 0 720 1999 1 8398 0 716 0 399 2000 1 352 0 737 0 814 2001 1342 0 692 0 684 0 749 2002 0 918 2003 0 771 2004 0 606 2005 0 467 2006 0 834 2007 0 696 0 649 o T o T S S IOTC 2014 WPTT16 53 Rev_2 2 How to read the input data and initial plot Click the Single trajectory with the confidence surface sub menu EF KobePlot Ver3 2014 if Then users will see the empty window see below Then click file open then go to the folder where the user s CVS file is located and import it to the software LK tox Single Fie Edt Window Help Fath of N Exit SB SBmsy 10 IOTC 2014 WPTT16 53 Rev_2 3 Initial default plot and graph settings After users click Open users will see the default plot as below If users don t have confidence surface data users will get only the trajectory O x File Edit Window Help SB SBmsy If users want to edit the initial graph go to the graph setting menu as below Single plot tmp cs A 4 OG N02 SB SBmsy 11 IOTC 2014 WPTT16 53 Rev_2 4 Editing the initial plot points and lines Then users will see the graph setting menu two types Use
8. the cursor to the location where users want to make text box then click the right button of user s mouse Users will see the context menu as below Click Insert Text Box then make the text Users can drag the text box by the cursor to move the location that users want to place Label Edit Made Copy wave As ave size Load Size Risk probability to exceed the MSY 02 level 0 8 Risk probability to exceed 0 2 the MSY level Medium Risk 0 4 0 6 32 IOTC 2014 WPTT16 53 Rev_2 7 Editing Legends X axis left and Note X axis right To edit Legends X axis left and Note X axis right get Label Editor below then edit Graph Settings Label Editor x Lopy Detaled Settings Cwrent catch p Fisk 43 562 tons probability to exceed the MSY level 10 of the Curent catch tons 20 of the Curent catch tons 30 of the Curent catch tons 7 Moving Legends X axis left and Note X axis right In the Label Edit Mode see above users can adjust positions of Legend X axis left and Note X axis right by dragging with mouse C rent c at Curent catch 33 IOTC 2014 WPTT16 53 Rev_2 8 Saving the diagram After users finalize the plots save the plots by click Save As There are 4 ways to save to the external file i e Kobe2 BMP PNG and EMF If users save Kobe2 file then users can
9. Received 6 14 amp 18 November 2014 IOTC 2014 WPTT16 53 Rev_2 Kobe I Kobe plot Kobe II risk assessment software New version 3 2014 User s manual November 2014 Tom NISHIDA Toshihide KITAKADO Kazuharu IWASAKI and Kiyoshi ITOH 1 Corresponding author aco20320 par odn ne jp National Research Institute of Far Seas Fisheries NRIF SF Fisheries Research Agency FRA Shimizu Shizuoka Japan 2 Tokyo University of Marine Science and Technology Tokyo Tokyo Japan 3 Environmental Simulation Laboratory ESL Inc Kawagoe Saitama Japan Abstract and Notice release of the software This is the users manual describing how to use the 3 version of Kobe I stock status trajectory plots Kobe II risk assessment diagram software Kobe I and II were recommended by the 5 tuna RFMO meeting in 2007 Kobe Japan and 2009 Barcelona Spain respectively This software is free of charge available at http ocean info ddo jp kobeaspm kobeplot KobePlot zip from Nov 19 2014 After users use this software and if users need improvements please let us know We will revise and will release more user s friendly software As for Kobe II the risk assessment matrix format was recommended but the table formats have been difficult to understand its meanings often especially for mangers and industries as it uses mathematical and technical notations To improve this situation we developed the visualized presenta
10. There are a number of labels in the Kobe plot 1 If users want to move and edit these labels click the right button of the mouse or equivalent operation then users will see 5 types of menus to move and edit labels and 2 other functions in the red box as shown next page 22 IOTC 2014 WPTT16 53 Rev_2 O x Edit Scenario Labels Move Contour os label Move phase name label Move Limit Target XY label Move PieChart Zoom Scroll Copy Save As Save Size Load Size 0 1 2 3 4 SB SBmsy 1 Editing and moving scenario labels Click the right button of the mouse in the plot area then the context menu will appear Select and tick Edit Scenario Labels Then click the label users want to move and drag it to where users desire to place Edit Scenario Labels Move Contour 6 label cenario 01 Move phase name label Scenario 03 Move Limit Target AY label Move PieChat enario 02 Copy Save As Save Size Load Size 23 IOTC 2014 WPTT16 53 Rev_2 Callout line on and off Important Press the Enter key to finish editing 2 Moving contour percentage labels Move the cursor to the percentage label of the plot and click the right button then the context menu will appear as below Select Edit Contour Labels then put the cursor on the percentage label e g 95 then move it to where users desire see below Kobe plot Edit Scenario Labels Move Contour label
11. a Stocks Chair ISSF Scientific Advisory Committee APPENDIX A SPECIFICATION OF KOBE I AND II SOFTWARE General Operation Systems OS MS windows OS both 32 and 64 bit PCs Microsoft Visual Studio 2010 general programming TeeChart Pro NET v2010 graphical components Copyright 2010 by Steema Software SL Confidence surface in Kobe plot I and contour estimations in Kobe plot diagram I Following functions in R are applied Confidence surface kde2d function Kernel estimation Kobe plots 2 Contour estimation of the diagram surf gls function to assign contour surface by least square means prmat function to assign the contour line by kriging 30
12. aving the plot There are two ways to save the Kobe plot 1 e only images or the whole Kobe plot which can retrieve the same image then users can edit further In order to save just click Save by As File Open n Kobe plot sample Path of R exe Edt Window Help Exit Base case 2013 F Fmsy SB SBmsy There are 3 ways to save only images by 3 different types of external file 1 e BMP PNG and EMF It is recommended to use EMF which provides the best quality of picture for users report in the word file for example 27 IOTC 2014 WPTT16 53 Rev_2 While Kobe plot If users want to retrieve the last plot and conduct further editions there are 3 ways to save by menu as follows External file name F KobePlot Ver3 2014 x Kobel_Single Kobel_Multi Kobel_Comp 28 IOTC 2014 WPTT16 53 Rev_2 5 Kobe Plot II Risk assessment matrix diagram Kobe II Risk assessment matrix was recommended to produce by 5 tuna RFMOs meeting 2010 in San Sebastian Spain The risk matrix here means the risk probabilities that SSB TB ratio and F ratio will exceed their MSY levels in 3 and 10 years But the matrix table has been quite difficult to understand its meanings especially for manger as the matrix is described by the mathematical notations see below To improve this situation we developed the diagram to convert from the matrix
13. ion has been successfully installed Click the registered icon to start the installed program kantan Installer Notice of the successful installation Note The Kobe plot software needs NET Framework 4 which is normally available in Windows OS But if users don t have it install it by downloading from the web page IOTC 2014 WPTT16 53 Rev_2 3 Starting the software 1 Click the Kobe Plot Ver 3 2014 icon located on user s desktop window i kobeF lot Ver 302014 exe 2 Users will be asked to specify the path of the R exe when launching Kobe I II software for the first time If users don t have R software download and install to users PC Then specify the path of the R exe Gadtiun kobe Plot needs to have R installed to work properly Please specity the path of Rexe Download F for Windows 32 64bit Where is Rexe gt Install Directory R K 2 1xx bin Rere Generally R exe exists in the following path after installing R EEE O O O O Program Files R R 2 15 1 bin di i386 2012 10 09 16 23 _ config sh 2012 06 22 15 51 gt RR 2012 06 22 15 34 R Rscript 2012 06 22 15 34 Install Directory R R 2 1x x bin R exe Note Recent version of R is R 3 12 7 IOTC 2014 WPTT16 53 Rev_2 3 Users can change the path of R exe later from File gt Path of R exe f ASRM Edit Opern Save As Fath of R exe Exit
14. ment of Y axis Font Size Select the font size Click B to make the font bold Title Name the current Kobe plot e g Indian Ocean Albacore Mark Size Select the circle size of year marks last 2 digits Mark Font Size Select the font size of year last 2 digits Click B to make the font bold Limit and Target Reference Point See next page IOTC 2014 WPTT16 53 Rev_2 Creating Limit Reference Point Click Limit Reference Point box then select of SBmsy and Fmsy and click Limit Reference Legend as below levels are different by species Table 1 is used in IOTC as an example W Limit Reference Point Limit Reference Legend M xX SB limit 0 4x SBmsy F limit 1 4 x Fmsy Color m Width fi Style Solid Font Size 10 a Table 1 Interim Limit Reference Point for Bmsy and Fmsy by species IOTC Stock Target Reference Point Limit Reference Point Albacore SBmsy Fmsy 0 4 SBmsy 1 4 Fmsy Bigeye tuna SBmsy Fmsy 0 5 SBmsy 1 3 Fmsy Skipjack tuna SBmsy Fmsy 0 4 SBmsy 1 5 Fmsy Yellowfin tuna SBmsy Fmsy 0 4 SBmsy 1 4 Fmsy Swordfish SBmsy Fmsy 0 4 SBmsy 1 4 Fmsy Creating Target Reference Point Target Reference Point is also created in the same way as in Limit Reference Point For example IOTC it is now SB SBmsy 1 and F Fmsy 1 for all species then set up is as below M Target Reference Point Target Reference Legend V X SB target 1 0 x SBmsy o E H W Y F tarzet 1 0 x Fmsy Color
15. ng click OK button see previous page then users will get the Kobe plot II risk assessment matrix diagram with Legend and Note as below Note Users can change ranges for example Legend 30 of the Current catch tons 20 of the Current catch l tons 10 of the Current catch tons Curent catch tons 10 of the Current catch feat de Current catch tons 30 of the Current catch tons 40 of the Current catch tons 5 Label Edit Mode 40 40 by 10 interval by graph settings Note 2012 2014 2016 To edit the Legend Note and To insert some text Change from Normal Mode above to Label Edit Mode below To get the menu click the right button of user s mouse or other ways if users don t use the mouse 402 of the Current catch t tons 302 of the Current catch tons 20 of the Current catch t tons 10 of the Current catch tons Current catch tons 10 of the Current catch oben ot de Current catch tons 30 of the Current catch tons sie of the Current catch tons Fie Edt Window Help 40 Risk probability to exceed the MSY 08 level 30 i Label Edit Mode Insert Text Box Copy Save As_ Save Size 2012 2014 2016 2018 2020 IOTC 2014 WPTT16 53 Rev_2 6 Insert and Edit the text in the diagram Users can add the text anywhere in the diagram First move
16. o the software Then users will see the graph setting menus as described below which are self explanatory Users can adjust various parameters to create user s desirable output diagram 3 Graph Settings aJ rapa Settines fone ple eee You Rang 3 Increrent iin Max 7e Font Sine Number of Contour Lines 4 Width of Contour Line E Color and border values of contour lines os fe 8 U Gnd Resolution IL show Legends left of Y axis show Legends right of Y axis Font Size 12 H a KobePlot 2012 Save ws Path of F exe Exit Year Range Set the year range to display Y Axis Set values of the minimum the maximum percentage and the interval increment Font Size Select the font size Click on the B button to make the font bold Number of Contour Lines Select the number of contour lines from 2 to 4 Width of Contour Lines Select the width of contour lines from 0 to 10 Colors and border values Set colors and border values of the contour lines Grid Resolution Move the grid resolution bar for the optimum resolution of the diagram default position is recommended Legends Note and Font size Tick the box to show Legend left of Y axis or Note right refer to the sample next page and select Font size IOTC 2014 WPTT16 53 Rev_2 4 Displaying the Kobe plot II diagram SSB TB ratio or F ratio After users set up the graph setti
17. on 1 Uninstall the old versions of Kobe I II software if users have If users installed the previous versions uninstall it first 2 Download the package Version 3 2014 including software manual and other references from http ocean info ddo jp kobeaspm kobeplot KobePlot zip available from Nov 19 2014 then unzipped 3 Setup and installation Double click the software gt and follow the steps as below KobePlot Ver3 3014 l Welcome to the KobePlot Ver3 2014 Installation Program This program will install KobePlot Vers 2014 on your computer itis strongly recommended that you exit all programs before running this installation program Click Next to continue the installation Click Cancel to quit the installation program WARNING This program is protected by copyright law and international treaties Unauthorized reproduction or distribution of this program or any portion of itis prohibited by Law ESL Next Cancel Kantan Installer Initial window of the installation IOTC 2014 WPTT16 53 Rev_2 KobePlot Ver3 2014 Select Destination Folder Set up the destination folder where the application will be installed Select the folder where files will be installed then click Next CAKobePlot Vera 2014 Browse Default Folder space Available 304 715 946 032 byte Space Required T 602 726 byte Cancel Install to the software to the particular folder C for this case If u
18. on 1 A single plot with a confidence surface 09 15 4 2 Option 2 Multiple plots without confidence surface 15 19 4 3 Option 3 Multiple comparisons among different stock assessment results 20 22 4 4 Common functions editing moving labels and saving 22 28 5 Kobe Plot II risk assessment diagram 29 34 Acknowledgements 34 References 35 Appendix A Software specification 35 Submitted to the IOTC WPTTI6 November 15 19 2014 Bali Indonesia BBDM Bmsy CI Fmsy IOTC LRP MFCL MSY SB SBmsy TRP IOTC 2014 WPTT16 53 Rev_2 ACRONYMS Total biomass Bayesian Biomass Dynamics Model Biomass which produces MSY Confidence interval Fishing mortality F2010 is the fishing mortality estimated in the year 2010 Fishing mortality at MSY Indian Ocean Tuna Commission Limit Reference Point Multifan CL Maximum Sustainable Yield Spawning biomass sometimes expressed as SSB Spawning stock biomass which produces MSY Target Reference Point IOTC 2014 WPTT16 53 Rev_2 1 Introduction 1 1 Overview This Kobe I II
19. options and users can create desirable plots After users finish the initial graph setting push OK button then users will see the edited Kobe plot next page 18 IOTC 2014 WPTT16 53 Rev_2 raph Settings Points and lines Trajectory and Phases Select Scenarios to Display and the Line Colors v Iv 2 IV 3 E E E ge Phase color Line width of XY axis Color E Width 5 Style Sotia m Phase name Label M Overfished Horizontal gt M Overfishing vertical gt Recovering Horizontal is Safe zone Horizontal Font Size 12 B H o a Graph setting menu for Trajectory and Phase Multiple Kobe plots sample oe 05 01 7 09400 987 5 39 94 13 9332 12 949 1 9 a 10 Shane SE 3 kii 8 a 20078 7717 n 2 75 73 TA F Fmsy 0 2 4 6 8 SB SBmsy Edited multiple Kobe plots by graph settings 19 IOTC 2014 WPTT16 53 Rev_2 4 3 Multiple comparisons among different stock assessment results In the similar way as previous options multiple comparisons option can be conducted as below only essential figures are provided F KobePlot Ver3 2014 l Xj Kobe plot I Single trajectory with a confidence surface Multi trajectories no confidence surface Multiple comparisons of a particular point of the Kobe plot among different results Data format example SB Sbmsy SB Sbmsy SB Sbmsy F Fmsy F Fmsy F Fmsy Methods point lower upper
20. retrieve the last diagram that users save then users can do further editions To save only mages users ca use BMP PNG or EMF But EMF is recommended to use for user s paper document file as it will provide the best quality of picture although it is a bit heavy file Edit Window Help Risk Path of R_exe Fabs to exceed Exit Fmsy 52 457 tons 20 08 level 48 085 tons 10 Current catch Midium risk ov 43 714 tons 9 39 343 toms 10 Low Midium risk 34 971 tons 20 Low risk 30 600 tons 30 0 26 228 tons 40 2016 ACKNOWLEDGEMENTS We sincerely thank to Fisheries Agency of Japan 2009 2014 to provide the fund to Tuna and Skipjack Resources Division in National Research Institute of Far Seas Fisheries NRIFSF Fisheries Research Agency of Japan FRA for this Kobe software development project In addition we appreciate world wise users who made comments and suggestions to improve this software 34 IOTC 2014 WPTT16 53 Rev_2 REFERENCES Kell L T 2011 A STANDARDISED WAY OF PRESENTING SPECIES GROUP EXECUTIVE SUMARISES ICCAT SCRS 2010 138 Collect Vol Sci Pap ICCAT 66 5 2213 2228 Kell L T Kobe R tools for Tuna Management Advice ICCAT Maunder M N and Aires da Silva A 2011 EVALUATION OF THE KOBE PLOT AND STRATEGY MATRIX AND THEIR APPLICATION TO TUNAIN THE EPO Restrepo V 2011 Stock Assessment 101 Current Practice for Tun
21. rs can adjust various parameters to create user s desirable plot Below is the 1 type for points and lines Points and lines Trajectory confidence surface and phase Ist Year 1955 57 Years Select Years to Display M All Years Title Kobe plot Font Size fis B a IV 1955 M 1959 V 1963 M 1967 M 1971 1956 1960 V 1964 1968 V 1972 Limit Reference Point M 1957 M 1961 M 1965 M 1969 M 1973 Limit Reference Legend M 1958 M 1962 M 1966 M 1970 M 1974 06 SB limit 0 6 x SBmsy 4 gt 3 F limit 1 3 x Fmsy m Axis Color H Width fi Style Sota Title Min Max Increment X SB SBmsy 0 32 4 39 1 Font Size fo 4 E F Fmsy 0 47 2 19 1 mse A e ont Sze 20 soi Target Reference Legend Change titles of XY axis to other names X fao V xX SB target 1 0 x SBmsy x BO Y 1 0 y F target 1 0x Fmsy Target Reference Point Color W Width fi Style Sota Mark Size 10 Mark Font Size 10 4 Font Size 10 o Editing Points and Lines Years Set the number of years to display _ Select Years to Display Choose each year individually to display un display _ X Axis SB SBmsy i Choose SB SBmsy SSB SSBmsy Bmsy or TB TB msy using the pull down menu i Y Set values of the minimum the maximum and the increment of X axis _ Y Axis F Fmsy Set values of the minimum the maximum and the incre
22. s shown next page 1 e year column 1 then the data for the first plot Biomass SB B ratio column 2 and F ratio column 3 then for the second plot Biomass SB B ratio column 4 and F ratio column 5 and so on 15 IOTC 2014 WPTT16 53 Rev_2 Year X Y X Y X Y Faso 1972 5 37 0 00012900 1973 5 44 0 00017600 1974 5 41 0 00041800 1975 5 46 0 00030600 1976 0 00366 0 00300 5 41 0 00046100 1979 0 00511 0 00123 5 38 0 00069000 1980 0 00493 0 00191 5 36 0 00084300 1981 0 00498 0 00177 5 42 0 00083100 Data input example for Multiple Kobe plots 1977 0 00333 0 00167 5 45 0 00054500 1978 0 00367 0 00122 5 39 0 00057100 2 Getting started and importing the data Click the Multi trajectory plot window F KobePlot Ver3 2014 x Kobe plot I Multi trajectories no surface Miultiple SOT pai SOILS ofa iT t Liat t of the Kobe plot among different results point Then users will see the empty window next page Then click open file open then go to the folder where user s CVS file is located and import to the software 16 IOTC 2014 WPTT16 53 Rev_2 Edit Window Help Open Save As Exit SSB SSBmsy After users click Open users will see the default plot as below left If users want to edit the initial graph go to the graph setting menu as below right Multi plot multi plot sample csv 5 x File Edit Window Help Detailed Settings
23. sers want to install kantan Installer their favorite folder select using Browse CAUTION Users may not able to install Kobe plot software into their favorite folder due to users account control restriction under the OS KobePlot Ver3 2014 E Select Program Folder Set up the program folder icon Select the folder from Start Menu where the shortcut for the application will be set then click Next Accessories Maintenance f Zip Administrative Tools BT Program BUFFALO Canon Printer Uninstaller Dell bd Do not create a start menu folder kantan Installer Kobe plot icon will be set in the desktop in this case If the icon does not appear in the desktop make it using the sort cut option menu available in the window OS after the installation is completed 5 IOTC 2014 WPTT16 53 Rev_2 KobePlot Verdi 2014 E Check the Installation information indicate the installation information such as the destination folder Check the installation information then click Next when you do not need to change it Click Back to reenter the installation information then edit it when you need to do it Destination Folder C KobePlot Vers 2014 Program Folder Extra Menu Create Shortcut on Desktop off Cancel Kantan Installer Back Summary of the installation KobePlot Ver3 2014 l Congratulations The application has been successfully installed The applicat
24. software consists of Kobe I stock status trajectory plot and Kobe II risk assessment diagram Kobe Plot I can make historical stock status trajectory plots for SB SBmsy or B Bmsy and F Fmsy using results of stock assessments Kobe II depicts color diagrams for results of risk assessments for SB SBmsy and F Fmsy 1 e probabilities violating their MSY levels in the future by different catch level scenarios 1 2 Operation Systems OS This software can be used under MS windows OS operated by both 32 and 64 bit PCs 1 3 History of the development 1 version 2011 TOTC 2011 WPTT13 45 Release of the initial Kobe plot software containing basic functions for Kobe I plot and Kobe II diagram 2 version 2012 IOTC 2012 WPM04 05 Graphic components were improved using TeeChart Pro NET v2010 Steema Software according to requests by worldwide users Release of two separate software for 32 and 64 bit OS PCs 3rd version 2014 JOTC 2014 WPTT16 53 Release of one united software for both 32 and 64 bit OS PCs Designs and functions of Kobe plot I are further improved according to requests by worldwide users Limit and target reference points can be depicted One menu in Kobe I plot is added to show multiple comparisons among different stock assessment results Pie chart option is added in Kobe Plot to show compositions of uncertainties in 4 phases IOTC 2014 WPTT16 53 Rev_2 2 Installati
25. tion diagram of the matrix for anyone to be able to understand its meanings easily Please note that this software is suitable for those who have difficulties to make Kobe I plot and II quickly and effectively in a very short time especially during the working meetings Thus it may not be suitable for those who can make these plots and diagrams and or create better ones by own using specific codes such as R This is because this software can make fixed designed plots and diagrams However it has a lot of flexibilities to change colors fonts lines symbols legends and labels by graph setting functions see the text for details This software development project has been funded by Fisheries Agency of Japan 2009 2014 for Tuna and Skipjack Resources Division National Research Institute of Far Seas Fisheries NRIFSF Fisheries Research Agency of Japan FRA We sincerely acknowledge their continuous financial supports for this project Contents ACTONYMS 02 1 Introduction 03 2 Installation 04 06 3 Starting software 07 08 4 Kobe Plot I stock status trajectory 3 options 4 1 Opti
Download Pdf Manuals
Related Search