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1.      direction  degrees  frequency  Hz     DIWASP    Directional WAve SPectra Toolbox    Version 1 1  For MATLAB    User Manual       270    David Johnson  Coastal Oceanography Group  Centre for Water Research  University of Western Australia  Perth    Research Report No  WP 1601 DJ  V1 1     CONTENTS    1  DIWASP OVERVIEW    1 1   1 2   1 3     What is new in Version 1 1  Supported data types    Estimation methods    2  INSTALLATION    3  DIWASP DATA STRUCTURES    3 1   3 2   3 3     The instrument data structure  The spectral matrix structure    The estimation parameter structure    4  DIWASP FUNCTIONS    4 1   4 2   4 3   4 4   4 5   4 6   4 7   4 8     dirspec  plotspec  writespec  readspec  infospec  testspec  makespec    Internal functions    5  THE DIWASP SPECTRUM FILE FORMAT    6  CODE  BUGS AND MODIFICATIONS    7  REFERENCES    10    11    11    12    LICENSE AGREEMENT AND DISCLAIMER  DIWASP  is free software  you can redistribute it and or modify it under the terms  of the GNU General Public License as published by the Free Software  Foundation  However  the DIWASP license includes the following addendum  concerning its usage   This software and any derivatives of it shall only be used for educational  purposes or scientific research without the intention of any financial gain  Use  of this software or derivatives for any purpose that results in financial gain for  a person or organization without written consent from the author is a breach  of the license agreement
2.    This software is distributed in the hope that it will be useful  but WITHOUT ANY  WARRANTY  without even the implied warranty of MERCHANTABILITY or  FITNESS FOR A PARTICULAR PURPOSE  In addition the author is not liable in  any way for consequences arising from the application of software output for any  design or decision making process   The GNU General Public License forms the main part of the license agreement  included in the package     This document should be referenced as        DIWASP  a directional wave spectra toolbox for MATLAB    User Manual   Research Report WP 1601 DJ  V1 1   Centre for Water Research  University of  Western Australia        DIWASP V1 1 user manual    1  DIWASP overview   DIWASFP is a toolbox of MATLAB functions for the estimation of directional wave  spectra  Spectra can calculated from a variety of data types using a single  function dirspec  Five different estimation methods are available depending on  the quality or speed of estimation required  Miscellaneous functions are also  included to manage the spectra files  plot the spectra and run tests on the  estimation methods     1 1  What is new in Version 1 1  Version 1 1 is the first major revision of DIWASP  While the basic estimation  algorithms remain unchanged  it includes a number of improvements  hopefully   both to the command line interface and to the pre processing  The main  difference is the use of data structures for the input data  the program parameters  and the calculated 
3.  Hsig Significant wave height  Hmo    Tp Peak period   DTp Direction of spectral peak   Dp Dominant direction   Inputs    SM A spectral matrix structure containing the file data    Hsig is the theoretical significant wave height calculated as 4 times the zeroth  moment of the spectrum  Tp is the peak period  corresponding to the highest  point in the one dimensional frequency spectrum  DTp is the main direction of the  peak period  i e the highest point in the two dimensional directional spectrum      11    DIWASP V1 1 user manual    Dp is the dominant direction defined as the direction with the highest energy  integrated over all frequencies     4 6  testspec  Testing function for directional wave spectrum estimation methods      EPout    testspec ID theta spread weights EP     Outputs    EPout The estimation parameters structure used in the test    Inputs    ID An instrument data structure containing the measured data  The  ID data field is ignored    theta vector with the mean directions of a sea state component   spread vector with the spreading parameters of a sea state component   weights vector with relative weights of sea state components   EP The estimation parameters structure with the values under test    used  Default settings are used where not specified   All inputs are required    The fields ID layout and ID datatypes and ID depth are used to specify the  arrangement of the imaginary sensors     The function outputs a plot of the specified spreading function  s
4.  al 1985      Erma  f    EAS Walt iOS fn V0a 0     f  4  Pu    5 4       o aof          s aeui  of t    20   fn O    a  lt  f  0 50  O   lt 1  E     g    22  fb  k   1 1 lt  y  lt 2 lo    on f  H 2     1 0 5 2 07     22    where H is the depth and Imig the dominant frequency  input freqimh 2   and the  other parameters are constants set internally to     a  0 014  yY  2   O   0 07  o   0 09    The spectrum is scaled so that it has Hims equal to the input Ho  The directional  spreading is calculated as described for testspec using inputs theta  spread and  weights     14    DIWASP V1 1 user manual    4 8  Internal functions    The functions contained in the private subdirectory are used internally by the  main functions     4 8 1  Transfer functions    The transfer functions map a surface elevation to an equivalent instrument  response for a given depth  The transfer functions have the same name as the  datatypes described in The instrument data structure     New transfer functions or estimation methods can be incorporated by simply  including a new transfer function m file and then using calling the filename as a  new datatype argument  New transfer functions must operate as follows      trm  newf  ffreqs ddirs wns z depth     ffreqs is a column vector of size  nf 1  and ddirs is a row vector of size  1 nd   containing the frequency and direction bins of the calculation  as distinct from the  spectral matrix bins   wns is a vector the same size as ffreqs of wavenumbers  corre
5.  filled    Inputs   freqiph 3 component vector  I p h  containing the lowest frequency l   peak    frequency p  and highest frequency h   theta vector with the mean directions of a sea state component  spread vector with the spreading parameters of a sea state component  weights vector with relative weights of sea state components    Ho RMS wave height for generated spectrum  ID An instrument data structure  field ID data is ignored  ndat length of simulated data    noise level of simulated noise  Gaussian white noise added with variance of   noise var eta      All inputs are required  The generated spectrum is plotted on the screen and written to a file called     specmat spec    in DIWASP file format  The spectrum has 50 frequency bins and    60 directional bins  The frequencies are spread between freqlph 1  and  freqlph 3   Directions cover a complete circle     13    DIWASP V1 1 user manual    The input ID specifies the imaginary layout and type of the instruments for which  the pseudo data is generated  The length of the data is ndat with a sampling  frequency of ID fs     The input noise allows the addition of noise to the fake data to more closely  simulate real sensor outputs  The noise added is gaussian white noise with a  variance of noise var eta  where var eta  is the variance of the simulated data  eta before addition of noise  The input noise should be set to zero for a clean  signal     The simulated spectrum is constructed using a TMA spectral shape  Bouws et 
6.  options input allows you to control the screen and file output and work as  follows       MESSAGE  Default value 1  This sets the    noise level    of screen display  0 show minimal screen  information  only showing the main calculation steps  1 shows more    DIWASP V1 1 user manual    information including the frequency being calculated and the model  number in the case of the EMEP and BDM methods  With this setting   and 0  MATLAB warning messages are also suppressed  2 outputs  all available information including warnings and state of relaxation   Note that warnings regarding matrix solutions may be shown but the  algorithms should deal with these in most cases    e  PLOTTYPE  Default value 1  This sets the type of plot output shown at the end of the calculation   Plot type 0 suppresses the plotting function  1   4 are passed directly  to plotspec as parameter ptype        FILEOUT  Default value      This option sets the filename for the output file containing the  calculated spectrum  This simply enables or disables a switch that  calls writespec with input arguments SM and the filename  An empty  string      means no file is output     4 2  plotspec    Plotting routine for directional spectrum     plotspec SM ptype     Inputs   SM A spectral matrix structure    ptype plot type   1 3D surface plot  2 polar type plot  3 3D surface plot  compass bearing angles   4 polar type plot  compass bearing angles     The 3D surface plot type is a MATLAB surface plot with SM freqs on
7.  positions are  0 0    5 5  and   5 5  on a coordinate system with  the first sensor as the origin and the x axis defined to coincide with the x axis of  the instrument setup  directions are returned relative to these axes     The datatype field describes the sensor type using one of the defined sensor  codes  These must be in single quotes and entered as a cell array using curly  brackets  For the example above  this would be     ID datatypes       pres       pres       pres         As asecond example  if an instrument which measured horizontal current  components and pressure was mounted 0 5m above the seabed the layout and  datatypes fields would be     ID layout    0 0 0 0 0 0   0 0 0 0 0 0   05 05 0 5    ID datatypes       velx       vely       pres    with ID data placed in columns accordingly     The sampling frequency  ID fs must be the same for all of the sensors and each  data stream is assumed to be synchronous  i e  data point no 254 is assumed to  be from the same time for all sensors   The ID depth field is an average for the  sampling area and is used in calculations involving the linear dispersion relation        3 2  The spectral matrix structure  The spectral matrix structure has four fields     SM freqs Vector of length nf defining bin centres of the spectral matrix  frequency axis    SM dirs Vector of length nd defining bin centres of the spectral matrix  direction axis    SM S Matrix of size  nf nd  containing the spectral density    SM xaxisdir The compa
8.  the  calculation of the directional spectrum and perform functions like plotting and  reading writing data files  To make sure the functions work correctly    1  Unzip or copy files to the same directory  This directory should be called     diwasp       2  Supporting functions must remain in a subdirectory called private  If you  move the main functions you must move this subdirectory and its files to  the same location    3  Add the new directory called    diwasp    with the main files   dirspec plotspec   etc    to the MATLAB path  Do this using pathtool  see  MATLAB help for details    The functions operate in the same way as any other MATLAB functions  Type  help  function name  for command line help information  Type help diwasp at the  matlab prompt for help overview of the package     3  DIWASP Data Structures    One of the main changes in Version 1 1 is the use of data structures to manage  the data more compactly  A structure is like a container and has a set of fields for  each data types  Each field is referenced using the         operator between the  structure name and the field name  So Struct A would references the data in  field A of structure Struct  See the MATLAB help regarding structures if you are  unfamiliar with these ideas  The advantage is that the entire data container can  be passed as a single argument     There are 3 main data structures used in DIWASP     1  The instrument data  ID  This contains the layout of the instrument  sensors  the type o
9.  the x axis   SM dirs on the y axis and the spectral density  SM S as the z value  The polar  type plot is a MATLAB polar plot with the direction showing values in SM dirs   the radius showing values in SM freqs and contours representing the spectral  density  SM S  An example of the polar type plot is shown on the front cover of  the manual    For both plot types  the direction is the direction of propagation  see also The  DIWASP spectrum file format   For options 3 and 4 the direction axis is the  compass bearing  This is calculated from the SM xaxisdir field that defines the  orientation of the axes  Note that if SM xaxisdir is 90 the appearance of the polar  plot is unchanged other than the direction labelling     10    DIWASP V1 1 user manual  4 3  writespec  Function to write out directional spectrum in DIWASP format     writespec SM filename     Inputs     SM A spectral matrix structure  filename String containing the filename including file extension if required    All inputs required  See 5 The DIWASP spectrum file format for information on the DIWASP format     4 4  readspec  Function to read DIWASP format files into a spectral matrix structure      SM  readspec filename     Qutputs   SM A spectral matrix structure containing the file data  Inputs     filename filename for the file in DIWASP format including file extension    4 5  infospec  Function which calculates and displays information about a directional spectrum     Hsig Tp DTp Dp  infospec SM     Outputs   
10. ASP V1 1 user manual    The spectral density itself  SM S is a matrix such that Sy contains values of the  spectral power density for the ith frequency and the jth direction  The energy is  per unit  Hz degree   Therefore to convert to component wave amplitudes you  need to multiply by the bin sizes df and d 8     aj  f2 S   df  d6       where    i is the amplitude of the component with the ith frequency and the jth    direction and     is the value in the spectral density matrix  If you change  between Hz  amp  rad s or degrees  amp  rads then you must also convert the energy  density value     3 3  The estimation parameter structure    The structure which defines the estimation method and other parameters  consists of five fields     EP method Estimation method used  Currently supported      DFTM  Direct Fourier transform method     EMLM  Extended maximum likelihood method     IMLM  Iterated maximum likelihood method     EMEP  Extended maximum entropy principle     BDM  Bayesian direct method    EP nfft Number of DFTs used to calculate the frequency spectra  frequency  resolution is  ID fs   EP nfft     EP dres Directional resolution of calculation itself specified as the number of  directional bins which cover the whole circle  Note that the actual  output resolution is determined by SM dirs    EP iter Number of iterations  this has various effects for different methods    EP smooth Smoothing applied   ON  or  OFF     If any fields are omitted  default settings will be use
11. al spectrum from a  Bayesian approach  Proc 21   ICCE Vol 1  ASCE pp 62 72    Hashimoto N  Nagai T and Asai T   1993  Modification of the extended maximum  entropy principle for estimating directional spectrum in incident and reflected  wave field  Rept  Of P H R    32 4  25 47    Isobe M   Kondo K  and Horikawa K   1984  Extension of MLM for estimating  directional wave spectrum  Proc  Symp  on Description and Modeling of  Directional Seas  Paper No A 6  15pp     Mitsuyasu H  et al  1975  Observation of the directional spectrum of ocean wave  using a cloverleaf buoy  J Phys Oceanogr  5 750 760    Pawka S S  1983  Island shadows in wave directional spectra  J  Geophys  Res   88 C4  2579 2591    18    
12. are  produced    am grateful for the bug reports and suggestions   have received to  date  If you find bugs in the code  have any suggestions for modifications or   more seriously  find errors in the actual algorithms  please contact the author     Email  johnson cwr uwa edu au    David Johnson   Coastal Oceanography Group  Centre for Water Research  University of Western Australia  Nedlands 6907   Perth   Australia    This version of DIWASP is freeware and doesn   t come with any kind of official  support  It is intended for the benefit of the coastal science academic community   Hopefully it might save you some time in analysing your wave data  Please  respect the license agreement    Good luck and enjoy     17    DIWASP V1 1 user manual  7  References    Barber N F   1961  The directional resolving power of an array of wave detectors   Ocean Wave Spectra  Prentice Hall  Inc  pp 137 150    Benoit M   1993  Practical comparative performance survey of methods used for  estimating directional wave spectra from heave pitch roll data  Proc 23 ICCE  Vol 1  ASCE pp 62 75    Bouws E   Gunther H   Rosenthal W  and Vincent C L   1985  Similarity of the  wind wave spectrum in finite depth water  1 Spectral form  J Geophys Res   90 C1  975 985    Hashimoto N   1997  Analysis of the directional wave spectra from field data   Aavances in Coastal and Ocean Engineering Vol 3  ed Liu P L F  World  Scientific  Singapore  pp 103 143    Hashimoto N  and Kobune K   1988  Estimation of direction
13. d     3 3 1  Estimation methods    A full discussion of the relative merits or disadvantages of each method are  beyond the scope of this manual  The papers by Hashimoto  1997  or Benoit   1993  are good places to start looking for more information  A brief summary of  each method is given below     e DFTM Very fast method that is good for an initial overview of the spectral  shape  However directional resolution is poor and negative energy  distribution sometimes occurs  Poor tolerance of errors in the data     DIWASP V1 1 user manual    EMLM Fast method that performs well with narrow unidirectional spectra   Can provide extremely good accuracy per computation time in some  cases  Poor tolerance of errors in the data can lead to negative energy or  even failure of the method    IMLM Refinement of the EMLM that iteratively improves the original EMLM  estimate  Highly dependent on the quality of the original solution so will  tend to perform poorly in the same situations as the EMLM  Will tend to  reduce anomalies such as negative energy in the EMLM solution   Computation time directly dependent on number of refining iterations but  provides good accuracy for reasonable computing time  Can overestimate  peaks in the directional spectra by overcorrecting the original estimate   EMEP Good all round method that accounts for errors in the data   Computation time is highly variable depending on how easily the iterative  computation finds the solution  This method can be as fast as 
14. directional spectrum  This significantly reduces the number of  command line arguments  Version 1 1 also includes all the small modifications  and fixes which have been incrementally made since the first release  This user  manual has also been significantly revised     1 2  Supported data types    All the standard wave recorder data types are supported  These are   e Surface elevation   Pressure   Current velocity components   Surface slope components   Water surface vertical velocity   Water surface vertical acceleration    1 3  Estimation methods    Five different estimation methods can be used  Each has different levels of  performance in terms of accuracy  speed and suitability for different data types     DFTM  Direct Fourier Transform Method  Barber 1961    EMLM  Extended Maximum Likelihood Method  Isobe et al 1984   IMLM  Iterated Maximum Likelihood Method  Pawka 1983    EMEP  Extended Maximum Entropy Method  Hashimoto et al 1993   BDM  Bayesian Direct Method  Hashimoto and Kobune1987     The code for the implementation the EMEP and BDM methods are based on  algorithms described by Hashimoto  1997   The IMLM method uses a modified  algorithm based on the one described by Pawka  1983     Performance tests of the different methods have been carried out by Hashimoto   1997  and Benoit  1993  for different measurement arrangements and spectral  shapes     DIWASP V1 1 user manual    2  Installation   DIWASFP is simply a collection of MATLAB m file functions which carry out
15. f sensors and the actual sensor data itself    2  The spectral matrix  SM  This is the output from the main calculation and  contains fields which define the bins of the spectral matrix  the orientation  of the axes system relative to true north and the spectral density itself    3  The estimation parameters  EP  This contains all the information  regarding how the directional spectrum estimation is actually carried out     The variable names in brackets are used throughout to identify a structure of that  type  Note however that each of the structures can be given an arbitrary unique  name and then passed to the functions to carry out operations  As with any other  structures however  the field names must not be changed  The field names are  the same as the individual variable names used in the manual for Version 1 0   Each of the three main structures is discussed in more detail below     DIWASP V1 1 user manual    3 1  The instrument data structure  The structure which defines the instrument data consists of five fields     ID data Measured wave data matrix   data in columns  one column per  sensor    ID layout Layout of the sensors   x y z in each column  x and y from arbitrary  origin and z measured upwards from seabed  m     ID datatypes Sensor type  Enter as cell list  e g      elev   pres    Transfer types included in DIWASP      elev  surface elevation     pres  pressure  velx  x component velocity     vely  y component velocity  velz  z component velocity     vels  
16. olid line  and the  estimated spreading shape  dotted line      The calculation is carried out for a frequency of 0 2 Hz     The inputs theta  spread and weights determine the shape of the directional  spreading function  Each of these inputs is a vector of length n where nis the  number of sea state components  Each sea state component has a mean  direction and a spreading parameter  The directional spreading is calculated with  a cosine power function  Mitsuyasu et al 1975         0 0   G 0   Sa  cos    i   0   Ya  cos  27     where    i is the weighting value  weights i   9  is the mean direction  theta i  and  Siis the spreading parameter  spread i  where i 1   n     The weights are normalized so that     12    DIWASP V1 1 user manual    faloa  1    Typical values for the spreading function would be 10  wind waves  to 100   narrow banded swell      testspec provides a powerful and quick way of testing the estimation functions  for specific instrument layouts  Note however that there are no errors simulated  so the pseudo cross power spectra are clean in that respect  This may cause the  methods to perform better than they would with similar real data     4 7  makespec    Function to generate an idealized directionally spread spectrum and fake data for  testing estimation routines      SM iDout  makespec freqlph theta spread weights Ho ID ndat noise     Outputs   SM Spectral matrix structure of the generated spectrum    IDout Returns the input ID with data in field ID data
17. omputation speed for the EMEP and BDM methods     EP smooth is a simple on off switch that determines if smoothing is applied to  the final spectra  This can be beneficial as it removes any spikes  which are in  any case not physically likely  and by default is on  The smoothing algorithm uses  a simple 5 point weighted average in both the frequency and directional axes     3 3 3  Algorithm iterations    The IMLM  EMEP and BDM methods use an iterating algorithm  EP iter sets the  number of iterations which has a slightly different effect in each method  The  exact effect is slightly different in each case  By default it is set to 100    For the IMLM method this is the number of    improvement    corrections carried out  at each frequency  It therefore directly affects the computation time but higher  numbers in theory give better results    For the EMEP and BDM methods this value limits the number of iterations before  the computation algorithm    relaxes    the iterative calculation  Reducing this  parameter does not necessarily lead to greater speed for these methods if the  algorithm is not reaching the iteration limit     DIWASP V1 1 user manual    4  DIWASP functions  4 1  dirspec    Main directional estimation routine  Takes measured data and information about  sensors and returns the estimated directional spectrum      SMout EPout  dirspec ID SM EP  options      Outputs   SMout A spectral matrix structure containing the results    EPout The estimation parameters struct
18. ot  necessary  too many and a lot of iterations are performed in cases where  the computation does need to be relaxed     Use the EMEP or BDM method for data heavily contaminated with errors   If complete garbage comes out of the EMEP BDM methods  do a check  with the DFTM method  This method is very unlikely to blow up so if this  does not produce something sensible  chances are the inputs are wrong     DIWASP V1 1 user manual    3 3 2  Resolution of the estimation    The fields EP nfft and EP dres control the resolution of the calculation and  hence the maximum resolution that can be achieved in the output spectral matrix     EP nfft is the number of DFTs carried out in the calculation of the cross power  spectra  Higher numbers result in greater frequency resolution  This argument is  passed to a MATLAB function csd   see MATLAB help for the esd function for  more details  The actual number of frequencies over which the directional  estimation is performed is bounded at the upper limit by the highest value in the  SM fregqs field  If EP nfft is not explicitly specified a sensible default value based  on the sampling frequency is used     EP dres is the number of directions used in the estimation calculation  The  computation is carried out for a complete circle of directions  The default setting  of 180 therefore gives a resolution of 2 degrees  The actual directions of the bins  in the output matrix are specified by SM dirs  Reducing this value can  dramatically improve c
19. sponding to the frequencies     z is the height of the instrument sensor above the bed and depth is the total  mean depth of the instrument location     trm must be returned as a size nf nd  matrix with the  i j  element corresponding    to the transfer function for the i  frequency and the j    direction     4 8 2  Other functions    Some of the private functions may be useful as stand alone functions for other  applications  These include     wavenumber m Calculates wavenumbers for given frequency and depth  from linear wave dispersion relation     makerandomsea m Creates a random surface elevation for a given spectrum  of component amplitudes  Useful for visualising sea  states     makewavedata m Make random sea elevation data for a specified spectrum  and layout of probes     Usage is described in the command line help    15    DIWASP V1 1 user manual    5  The DIWASP spectrum file format    DIWASP uses its own format for storing the spectrum files  It is intended to be  simple and easy to incorporate into other software on any platform    The file format consists of a single ASCII stream of numbers  The header section  contains information about the layout of the spectral matrix  and the body of the  file contains the energy of each component                                Position in file   Type FORTRAN   1 Real Compass direction of x axis  2 Integer Number of frequency bins  nf   3 Integer Number of directional bins  nd   4   Real List of frequencies starting with low 
20. ss direction of the x axis from which angles are  measured     1 Note that no correction is carried out for the effect of a mean current even when the velocities  are given as part of the input data  Results may be significantly affected in the case of strong  mean currents  In these cases  the data must be pre processed before use in DIWASP     DIWASP V1 1 user manual    The layout of the spectral matrix is defined by a vector of evenly spaced  frequencies  SM freqs and a vector of evenly spaced directions  SM dirs  These  form the bin structure for the matrix and are the values are the centre of the bin   Figure 1   Frequencies  f  are in Hz and directions  8  are in degrees measured  anticlockwise from the positive x axis  The orientation of a wave component is  relative to the x direction of the instrument layout and wave recorder directional  components  Figure 2   SM xaxisdir defines the compass direction of the x axis   In Figure 2 this would be 90   as with the axis orientation as shown by the north  arrow     Satma    T Sa    Sx F   D  i    Si 2  D2 a  1  D     Figure 1 Spectral matrix layout for components Sj  The frequency bin vector is F  1 nf  and  the direction bin vector is D  1 nd      Z       Wave component  travelling in this  direction       Figure 2 Orientation of direction relative to coordinate system used to define the  instrument layout and velocity components  With the compass orientation shown  the x  axis direction is 90   in the file header     DIW
21. the  IMLM running with a default 100 iterations  and give far superior results  In  other cases it is significantly slower  Low spectral energies at low and high  frequencies can cause problems with the solution and slow the  computation  In these cases the computation may need to be successively  over relaxed to achieve a converging solution  This is used as the default  method    BDM Overall probably the best estimate but very computationally  intensive  Computational expense is highly dependent on the directional  resolution  As with the EMEP low energies can slow the computation due  to the need for progressively relaxing the computation to achieve  convergence  This method can also have problems with three quantity  i e   pressure   velocities or heave roll pitch from a single location   measurements     One recommended procedure for deciding on an appropriate method is to use  testspec to test a sensor layout with a directional spreading similar to what is  expected from the data  This should give a good idea of the accuracy and speed  of operation of each method  However testspec does not simulate errors which  occur in real data    Other tips  see options below for changing settings      All  Reduce the frequency resolution to increase computation speed  EMEP BDM  Reduce the directional resolution to increase computation  speed   EMEP BDM  There is usually an optimal number of iterations to allow  before the computation is relaxed  Too few and relaxation occurs when n
22. ure with the values actually used for  the computation including any default settings     Inputs    ID An instrument data structure containing the measured data   SM A spectral matrix structure  data in field SM S is ignored    EP The estimation parameters structure  To use all default values enter an    empty matrix        options  options entered as cell array with parameter value pairs    e g   MESSAGE    1  PLOTTYPE     2     Available options with default values       MESSAGE  1  Level of screen display  0 1 2  increasing output      PLOTTYPE  1  Plot type  0 none  1 3d surface  2 polar type plot  3 3d   surface compass angles   4 polar plot compass angles       FILEOUT    Filename for output file  empty string means no file output    Input structures ID and SM are required  EP must be included but can be input as  an empty matrix       if the default estimation parameters are required   options   is an optional input     dirspec calculates the directional spectra using internally defined frequency and  directional bins     The actual output is mapped onto the spectral matrix defined by SM freqs and  SM dirs  For more information on the spectral matrix see section 3 2  Choosing a  resolution that matches the resolution of the calculation is also important  as  excessively small bin sizes will result in a memory hungry output that does not  contain additional information  Also see the section 3 3 2 for more information on  setting the resolution of the calculation     The
23. values  nf 3 This is the vector SM freqs  nf 4   Real List of directions starting with low values  nf nd 3 This is the vector SM dirs  nf nd 4 Integer Value 999 Marks end of the header  nf nd 5   Real Spectral density for each bin with frequency  nf nd  nf nd  4 as the outside of the loop           This is the matrix SM S        All the directions are given for the first frequency then all for the second frequency etc     The FORTRAN code for reading the spectral density is     do i l nspec   do j l1 ndir  read           enddo   enddo    S i j     A Fortran subroutine readspec f with code to read the DIWASP format is    provided with the DIWASP package     The functions readspec m and writespec m read and write from MATLAB  matrices to DIWASP format     16       DIWASP V1 1 user manual    6  Code  bugs and modifications   DIWASFP is written to be functional and easy to use  Although V1 1 contains more  error checking  this really only verifies the shapes of the inputs  not whether they  make sense  If you are getting garbage out of dirspec check your inputs    chances are they are somehow incorrect    The code has not been fully streamlined to keep the program structure clear and  user modification of code should be relatively easy  This does mean however that  the functions do not run as fast as they might  If you want high end performance  some modification will help or rewrite code in Fortran or similar    Updated versions of DIWASP will be made available as and when they 
24. vertical velocity of surface     accs  vertical acceleration of surface     slpx  x component surface slope   slpy  y component surface slope    ID depth Mean overall depth of measurement area  m     ID fs Sampling frequency of instruments   must be single figure for all Hz     3 1 1  How to input your instrument data    There are 3 main fields associated with the actual input data  Each of these has  one column for each sensor  where a sensor may be one particular measurement  from an integrated instrument or an individual instrument such as a pressure  sensor in an array  The ID data field contains processed  i e  cleaning and quality  control already performed  raw data from the instrument organized in sequential  columns  E g      ID data   0 3256 0 3421 0 4324  0 3345 0 5643 0 2345  0 3546 0 7658 0 1235  I1 ta  Io ta  I3 ta     where Im tn  is data from the m    sensor at the n  timestep  All of the data streams  from each sensor must be the same length so that the complete matrix is of  size n by m     The ID layout field contains the data about the sensor layout  As with the ID data  field  each instrument has its own column with a row for x y and z position  respectively  x and y relative to arbitrary origin  z height above seabed    Continuing the example above  if the three sensors were pressure gauges   spread in a triangle on the sea floor the layout field might be     DIWASP V1 1 user manual    ID layout  0 0 5 0  5 0  0 0 5 0 5 0  0 0 0 0 0 0      The instrument
    
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