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1.                                                              24  5 Software                                                                 26  5    System requirements                               26  5 2  Installati  n                              26  5 3 Additional files on the       5                            28  5 4                                       28  5 4 1        configuration                           28  5 42        measurement                                    444  4 4  000000                              29  5 4 3        evaluation window                     40 00000             enne nnne nennen 29    Inhaltsverzeichnis    Did                                                 antiasesse 29  56  COM port settings    rere nennen 30  5 7 Error messages    see e nh          30  5 8   Online ASSIStANCE      31  5 9                                                    32  6    BaPS measurements          oneri                   33  6 1 Requirements for reliable                                                                         33  6 2 Taking and transportation of soil samples                          sess 33  6 2 1      50      gt                          tet ente          34  6 2 2   Transportation    entren repr ERE                                         34  6 3 Assembling the sensor                               35  6 3 1 Installation of the soil temperature probe                                                  35  6 3 2  Assembling the lid    irit         
2.                                 102  12 2 3 Set of sampling rings for undisturbed soil sampling                                103  12 2 4 Further accessories                  essere eene nennen 105  13   Literat  re                                rte tret          106                                                                    seis 107   5 Contact    CD                                      seas        P                                                112       Introduction      Introduction    The Barometric Process Separation  BaPS  is a new method for the  determination of microbial carbon and most of all the microbial nitrogen  conversion rates in organic and mineral soils  Above all gross nitrification and gross  de nitrification rates are the most interesting     Nitrification  SCHL 1992  is the decisive process for Nitrate dispensation in soils   So far  determinations are only possible with the very costly   N pool dilution  technique  MOS 1993      Nitrate has an important environmental relevance as   Ill on one hand the contained Nitrogen is a major nutriment for plants          but on the other hand Nitrate contaminates ground und drinking water     Nitrate and it s decay products converted in the human body are detrimental to  health  A to high pollution burden  most of all in drinking water  must be avoided   In drinking water 50 mg l is generally regarded as the limiting value  but this  should already be classified as a critical value for infants     It i
3.                       87  9 1 12 2 Dissolved carbon                                 88  9 1 12 3                                                                   msn 88  9 1 13 Gas concentrations                                        88  9 1 14 Gas conversion                                 89                                                           89    9 1316                gt         ie ae ettet 90  9117  Nitrificationirate                  RR hei Eri Ha HEP          91  9 1 18 Setups before a                                               91  IO  Malfunction diagnosis                     eese nennen nnne 93     Technical specifications                    eese enne 94                                                                      94  11 2  ard Ware          95  1 3  Sensor technolo eieren a etr tee RE 96        4    Carbon dioxide    teer ne recrear es Pe                         96  HUS                          t 96  WG  _                                              97  11 7  Temperature    terret                              an 98  11 8 System requirements                                98  12 Replacement parts and accessories                     sess 99  I2  I Replacement  parts    99  12 1 1 BaPS calibration Service                                99  12 1 2 Replacement parts list                      eese 99  12 2    ACCeSSOFIGS   coner ne tei                       101  12 21  Cooling thermostat    oret hne          101  12 2 2 Incubation container            
4.          5    Barometric Process Separation    System for the determination of microbial  nitrogen and carbon conversion rates in soils    User Manual          UMS GmbH  M  nchen  January 2002       Legal annotation     The IFU has applied patent registration for the Barometric Process Separation   The company UMS GmbH is the only license holder     The UMS GmbH has written this manual and the BaPS software with best  possible care and knowledge  Still  UMS cannot guarantee the completeness and  exactness of the contents  UMS is not liable for any damages or compensation    claims     This manual or any part of this manual may not be copied in any way without the  written permission of UMS     We would be pleased to receive your comments and suggestions        2000   2002 UMS GmbH M  nchen  All rights reserved     Windows 95 98 ME  Windows NT 4 0  Windows 2000  Windows XP and Excel  are registered brand names of Microsoft Corporation     Pentium is registered brand name of Intel Corporation     2nd edition  January 2002  UMS GmbH   Gmunderstr  37   D 81379 M  nchen  Germany  Internet  www ums muc de    eMail  BaPS ums muc de       Symbole    Explanation of symbols     Warning  caution  important note  Not following this might cause       damages of the system or measuring errors     TIP Useful hints and tips     ANFO Additional Information     que Your addressee for any inquiries regarding this subject         Please carefully read        understand this manual before v     w
5.          aa    Soil sample rings are tran  special aluminium cases         resistant        humidity and  heat             0  Product   DJ inte    Dipl  Ing  Axel Rescher    Tel    49  0 89  12 66 52   13    eMail  ar ums muc de    Fax   20       UMS GmbH   D 81379 M  nchen    Gmunder Stra  e 37             103                     The soil sampling ring is  hammered into the soil  from the surface using an  impact absorbing hammer         guide cylinder     Open ring holder    In case of an open ting holder  the  ked in the holder by   lever   Over the ring about 4 cm headroom  is left  allowing for an oversize sam        fo be taken           Advantages     the ring holder are      The soil sample ring is very  easily replaced    71 The ring holder is relatively   Gust and dirt    esistance to penetration           Disadvantages of the ring holder           7 The sample is not oversized at  the bottom end of the ring    7 In very weak soils  or below the  water table  t  of the sample falling   ng   71 Sample rings may be lost  through being overloaded  and or being incorrectly  clam   7 Because the sampie ring is not  protected  it can be damaged                    The sample is trim   med using    small  frame saw             84 x 80 mm  h 50 mm  volume 250 cc bpe 03 84 5C    i       Info       Specification changes reserved   Version November 2001       2001 by UMS GmbH       Product         td    EVE         Closed ring holder    With this type of ring holder  the soil  
6.         To prevent condensation on the sensors the measuring head must always be  turned on before starting the tempering of the container  To do so  turn on the  BaPS sensor interface with the mains switch after connecting the cable to the  measuring head  The switch is placed on the backside of the sensor interface    enclosure      Tempering the container with a thermostat significantly     e increases the chance of condensation as soil moisture will e    vaporise and condense on the inside of the measuring  head  Therefore  always temper with small gradients to       Hardware description    allow an even temperature interchange within the  container               measuring head may only                          container v  e during a measurement  Take of the measuring head e  immediately after a measurement to prevent   condensation                 4 2 1 Sensor technology    During an automatic BaPS measurement the sensors measure all required  parameters  The accuracy of the determination strongly depends on the accuracy  of the sensors which makes it necessarily to use high quality sensors  A main focus  was set on the stability of the signals     In the following chapter the sensor principles are describes  The detailed technical  specifications are listed in the chapter  T3chnical Specifiactions      4 2 1 1 Temperature sensor    Microbiologic processes are very sensitive to temperature  Therefore  it is  necessary to have defined temperatures during measurements  Th
7.        9 Calculus    9 1 Description of the applied algorithms    In general all readings are temperature compensated     9 1 1 Basic equation    The basis for measuring the nitrogen and carbon dioxide conversion rates are the  following three equations  Noted below are not the complete chemical equations  but only those segments which are gaseous or contain N or C     Soil respiration                       Nitrification             7 3      gt  3 65 NO    Denitrification   2 NO   gt  X CO         oder      oder N               the respiratory coefficient RK is approx        is between 0 and    and X  between 2 and 2 5     9 1 2 Calculating the gas conversion rates    9 1 2 1 Headspace volume    By means of the ideal gas law pV   nRT the headspace volume is calculated from  the increase of the volume by the syringe volume          Pen   Pan               Vs    ead        75           9 1 2 2 Water volume    The water volume can either be determined by using the water content and the  soil sample volume           a7 400    or with the mass of the contained water     Mag   Ma    Mass    aq  whereat  Vaa   Mag    with V  in ml and M  ing     9 1 2 3 Saturated vapour pressure    As a consequence of the water content in the soil samples there is always a  relative air moisture of 100  in the closed BaPS container  This partial pressure  changes with the temperature as the saturated vapour pressure is very  temperature dependent  This pressure difference caused by temperature  vari
8.        NxOy Koeffizient  Fehler NxOy Koeff      autotrophe Nitrifikation  heterotrophe Nitrifikation  aut het Koeffizient  Fehler aut het Koeffizient   Respirationskoeffizient  Fehler Respirationskoeffizient   Fehler          Henry  Fehler DO  Henry       BaPS measurements    The configuration parameters are stored numerical  The values correspond to the    parameters as followed     Zero stands for not registered or not exciting values  In the following the readings    are listed  followed by the results     6 8 4 Calculations with Excel     To recapitulate the calculations easily an Excel table is submitted  With the  Excel   table each step of the calculation can be evaluated and adapted if  required  The Excel   sheet is stored in the Excel directory of then       5    software                Datei Bearbeiten Ansicht Einf  gen Format Extras Daten Fenster 2  Osea Say                 amp     24 dg 2       m           AB                                                                         Om                                                                              SS L L  1       Nebenrechnungen Onlinedarst  llung         2    7 379 hPa HKCO2A    0042402275 Anfang Ende   CORE 1226 hPa HKCOZE  0042402275 Druck  Komp 9632 98553 hPa  oz                         3380                    0  0    205        048 449                15888 hPa HKOE  00098205   page 2189 hPa pkompRest   9009   page  2470 hPa pkompRestE 89246     Fehler abs  Fehler rel   220  23 9    2320 na Nitrat 
9.       100 ra  s Es _                   4             4         gai          gar    2J    17    1 head Pt     ptt       The conversion rate gets more precise the larger the changes of the readings are   The factor Ap t  T  in the total gas amount error calculation is the possible  accuracy for measuring the temperature compensated pressure  For BaPS this  factor is 0 1 hPa  To achieve the preferable accuracy of 2  for the pressure  change measurement  a pressure change of 5 hPa must be measured     9 1 15 Denitrification  The accuracy with which the developing nitrogen compounds  N  and N O  can    be measured  is     89               AdNO      Adn    AdCO     AdO     Thus  the error for calculating the denitrification rate is       2 2          AK gen   Kaen  4 an RE           dNO                        the error for the determination of the soil dry weight is entered as well        This explains again why this parameter should be determined directly     9 1 16 Soil respiration    Error of the CO2 balance of denitrification       2 2     ECC                 Here  the factor X which is set by the user is needed  see chapter  Calculus          Soil respiration    Error in the CO2 balance of nitrification          2      a            AdCO  sen    AdNO                 AdCO                 nit          dn   dCO       dNO         Here  the factor Y which is set by the user is needed  see chapter  Calculus        Soil respiration    Then  the error of the CO2 conversion of soil resp
10.       Ok Abbrechen Hilfe                7 4 1 2 Further options    Unipolar   This describes the analogue input range  With the setting unipolar the analogue  input range is up to 0     2 5 V  If the setting is cancelled  empty tick box  the  measuring then is bipolar with an input range of  2 5     2 5 V    Buffer   The buffer is an interim analogue amplifier  If this option is selected  the analogue  direct impedance is increased  This is needed for connecting sensors with highly  resistive signals    If selected  the common mode range changes from the normal  without buffer     30     3000 mV to  50     3000 mV  With this the negative input cannot be  connected to earth GND directly  When measuring for example resitances as  PT 100 an additional internal resistance must be inserted between Ain and GND         series   Filter    Filter describes the smoothing  If this value is increased the measuring time is  shortened  but this will cause that the variations of the readings increase  The  value means the   first notch    in Hz  Set it to a maximum of 50  This corresponds  to a digital FIR filter     63                           The gain is the internal amplification of the signal connected           sensor  interface  For standard sensors it must never be changed  A change of the gain will  not change the signal as the software will re calculate it  Still  with a too large gain  the analogue measuring range is exceeded  A too small gain reduces the maximum    resolution   
11.      Configuration     BaPS  will automatically open when you start a new    measurement     Alternatively previously saved configuration files        be reloaded  During the set   up  the momentary configuration can be saved at any time and with an individual  file name for future use     FOP If you wish to reload the unsaved configuration of a TIP  previous measurement you can recall the stored  measurement and then save the configuration afterwards     An irregularly aborted previous measurement can be restarted with  File   Open  measurement   The BaPS software will recognize that this measurement had not    been terminated     Some configuration settings require to enter an deviation limit  Plausible deviation  tolerances are already preset  see chapter Error calculation   Tolerances which  are crucial for the accuracy of the measuring results are called  critical deviations    Please do not change those values unless you are aware of the consequences for  the error calculation     In general all settings may be entered manually by ignoring the preset values  The  software will select the correct unit automatically  If the values are beyond the  permitted limit the program will refuse them     6 5 1 Configuration register    BaPS measurements       Konfiguration   BaPS             Beenden der Messung  Information   Spezielle Parameter            Bodens  ulen  Volumen   7    Stechzylinder    100 mi      120         Fehler       4    Temperaturschwankung  Headspace Boden  
12.     After all settings in the configuration window are adjusted  the measurement is  started  Call up  Measurement   gt  Start  in the menu or click on the Start button  in the configuration window    Start    or on the start icon        48          BaPS measurements    The measurement will start with the determination of the headspace     6 6 1 Headspace determination and tightness test       Heads pacebestimmung    Volumenbestimmung    Druck vor der Yolumenreduzierung  700 1 hPa    Druck nach der Yolumenreduzierung     Berechnetes Headspacevolumen     Dichtigkeitstest   Zeit  mm ss    aktueller Druckwert   delta Druck        Bitte haben Sie 10 Minuten Geduld     Abbrechen  Hilfe                First you are asked to determine the eadspace  Prepare the gas tight syringe     standard 10 millilitres   When you click on  OK     the software will take the first  pressure reading     Now prick the needle into the septum  Carefully withdraw exactly 10 ml  or the  amount selected in the configuration  of gas out of the headspace  but do not pull  out the needle  Wait for at least one minute to have a pressure equilibrium  between BaPS and syringe  The pressure value is displayed online  When the    49          pressure is stable press  OK        now the second pressure value is measured          headspace is calculated automatically from the difference of first and second  pressure  Now remove the syringe            if the difference of first and second pressure is larger than  TIP
13.     gt         gt  N         8 1 1 Established measuring methods    Nitrification and denitrification are of major significance for the N circulation in  soils  see also fig 1   Still  nitrification is the process to focus on  as it is the most  important stabilisation factor of the subsequent nitrate contribution and the only  quantitatively important process of nitrate production in soils  Nevertheless  until  now the  N pool dilution technique is the only method to determine gross  nitrification rates in soils  This method is complex and needs an intense  expenditure for tools and staff  The knowledge of the gross rates is absolutely  necessary to make statements about actual conversion processes  When  measuring the net rate no statement about the individual processes is possible      8 1 2  N pool dilution technique    With this method nitrate labelled with  5IN tracers is introduced to the soil  Then   the time dependent gradual dilution of the  N pool caused by the subsequent  conversion of nitrate by nitrification is detected  5N pool dilution   MOS 1993   DAV 1992   The use of      and its detection with a mass spectrometer makes this  method very expensive  equipment costs  purchase of the marked substances   required replication of the tests  regenerating the samples   Besides  the following  problems have to be considered     1  The soil should be as homogenous as possible to achieve a symmetrical  distribution of the marked nitrate  This would disturb the natural
14.    36  6 3 3 Electronic connections                  sese ener eene entere 36  6 4 Tempering the system             eese teen E 36  6 5 Measurement set up            eerie            nennen ana 37  6 5   Configuration register              esses nennen nennen rennen 38  6 5 L   Soil COMMANS                                         RH Peta HERR EROR 39  6 5 1 2 Temperature variations                                40  6 5 1 3 Soil water determination                               40  6 5 1 4                                222  2                                                   el aeos iba ako 41  6 5 2 Register Termination Conditions 2    42  6 5 2 1    Terminating                            2                                                                  43  6 5 2 2 Accuracy of the rate                                       44  6 5 3 Information register osisssa enne nenne rennen 45  6 5 4        Special Parameter                             4  4  4        46  6 5 4 1                                  2205                        tete trix ie eene 47  6 5 42  aut het coefficient                                    8    1   48  6 5 4 3 Error of dissolved gases                      08                  4     48  6 6 The measuremerit            rrr hi titer beret      Re              48  6 6 1 Headspace determination and tightness                                                      49  6 6 2 Automatic                                                          51  6 6 2 1 Presentati
15.    Bath volume         3L   5 Working temperature range  10      150  C     Temperature accuracy    0 01      d Cooling capacity at 20  C 240W Specificati Art         T Heater capacity 230V 2kW   i Haake DC50       0 DC50 KI0   5   53     99 Product  Dipl  Ing  Thomas Pertassek  53 DJ into Tel    49  0  89   12 66 52   17   Fax   20  LE eMail  tp ums muc de       45             UMS GmbH   D 81379 M  nchen   Gmunder Stra  e 37             101                    IN       i                                  if    12 2 2 Incubation container          BaPS    Incubator Container          Info Tel    49  0  89   1266 52 17  gt  Fax   20     0  Product Dipl  Ing  Thomas Pertassek  eMail  tP ums muc de    Specification changes reserved  Version November 2001       2001 by UMS GmbH    En Pe UMS GmbH  gt  D 81379 M  nchen  gt  Gmunder Stra  e 37       Umweltanalytische                           Replacement parts and accessories       12 2 3 Set of sampling rings for undisturbed soil sampling          Specification changes reserved   Version November 2001       2001 by UMS GmbH       Qu                                                   lt          Sampling Ring Set    The soil sample ring  is placed in a closed  ring holder     The soil sample ring is  hammered into the soll  applying      impact  absorbing hammer              Umweltanalytische Me   Systeme  lt  www ums muc de       Sample ring kit  for all   soils to    depth of up     2    The sample sets with    postfix SC         be 
16.    Connect your PC and the sensor interface with the supplied interface cable     3 2 Find the COM port    Turn on the sensor interface  green LED must be on  and start the BaPS software  on your PC  In the software menu  select the function Datei   Eigenschaften     Initial operation    Umweltanalytische Mess Systeme   BaP    Datei Kalibrieren Optionen Fenster    D E a        Dichtigkeitstest                aktuelle Messwerte       The menu  Eigenschaften  will open  Either select the COM Port by yourself or    browse for the COM Port in the menu  Verbindung   Confirm your selection by    pressing the button      bernehmen         amp  Eigenschaften    n         Verbindung   Anpassen          Verbinden   ber         bernehmen   Abbrechen   Hilfe       If you cannot connect to the sensor interface check the following                  gt    gt     Is the sensor interface connected to the      with the interface cable   Did you use the appropriate cable    Are the plugs inserted properly    Is the sensor interface turned on     Is the COM Port used by another application      please also read chapter  Malfunction diagnosis               3 3 Initial function test    Now carry out the first functional test  Wait for 2 minutes after turning on the  sensor interface for stabilisation  In the software menu select  Options      aktuelle Messwerte   The window  aktuelle Messwerte  will open and plausible  readings should be displayed         Messwerte       aktuelle Messwerte   Digita
17.   0 1 hPa the waiting time after withdrawing gas was too  short  The pressure was not stable and the headspace  determination is falsified     Afterwards the automatic tightness test is performed   duration 10 min   You can  skip the test by clicking on  Abort   The system is regarded as gas tight if the  pressure does not arise for more then 0 2 hPa within 10 minutes  Only pressure  increases are considered  as the processes inside the system normally will cause  pressure decreases  The test is only functional if there is a pressure lower than    atmosphere inside the container  This might not be the case if the system has  been warmed up     ANFO The tightness test after the headspace determination INFO  serves as the reference and helps to detect major leaks in  the system  To assure a perfect function an additional  tightness test should be performed every 3 to 6 months   see chapter       As soon as the program will request to do so  return 10 ml of gas into the  container  Then click on    OK     The window    BaPS measurement    will open     BaPS measurements    You are asked to enter a name for the measuring file  Please select an appropriate  name an a directory of your choice  The file ending   dat  should never be  changed  because then the program will not be able to open this file again     The measurement is started when the pre set configuration parameters are  reached  The first valid value is marked green in the table  invalid values are  marked red  The fir
18.   ANFO By selecting the buffer or by raising the gain the electronic NFO  performance might be reduced     7 4 1 3 Temperature    PT 1000 are used as temperature probes  They have a resistance of 1000 Ohms at  09   and an increase of approx  3 8 Ohm per        The sensors must be supplied  with an constant current of approx  56       The voltage drop  approx  215 6            is measured  see connection scheme for temperature sensor      Find the optimum calibration data in the following figure                 Kalibrationsdaten  Analoge Kan  le   Digitale Kan  le     Temperatur Headspacel EZ  Polynom  a bx cx2 d 3         Unipolar       204 54     Buffer      1464 Fite   5      70388 Gain   32       738693 Versorgung   22338440 Strom 56pA     Ok   Abbrechen   Hilfe                      In accordance to the small signal a larger gain is selected     64                                   Maintenance and service    7 4 1 4 Pressure    The pressure sensor offers a 4     20 mA signal  the voltage drop on a 100 Ohm  shunt resistance then is 400     2000 mV for the range of 800     1200 hPa  The  best configuration is shown in the figure  With different pressure sensors the  parameters might vary          Kalibrationsdaten         Analoge Kan  le   Digitale Kan  le         Druck v       Polynom  a bx cx2 dx3         Unipolar     amp   700    Buffer       250 Filter  fo        i Gain        Versorgung      Strom 56 p                 Dk   Abbrechen   Hilfe         7 4 1 5 Carbon dioxid
19.   nit     CO  conversion by nitrification   9      res CO  conversion by soil respiration   dn mmol Total gas conversion rate   dNO mmol Conversion rate of gaseous nitrogen compounds during  denitrification  N5     0          dCO nit        conversion      nitrification            res       conversion by soil respiration   dn mmol Total gas conversion rate   dNO Mmol Conversion rate of gaseous nitrogen compounds during  denitrification  N5     0          dO  mmol Total Oxygen conversion rate   907 nit mmol Oxygen conversion rate during nitrification                   81                                                                                                                 907 res Oxygen conversion rate during soil respiration   dPAh hPa Pressure change at beginning of headspace determination                   Pressure change      end of headspace determination   HKco2 Henry constant for CO    HKo2 Henry constant for      kden mg Nitrat N   h Denitrification rate   knit      Ammonium N Nitrification rate   kres mg CO   h Soil respiration rate   Konzco2 mmol ml       concentration         2  2 mmol ml     concentration       den Input of the user  amount of developed      compared to     0      0         Input of the user  amount of developed N5O compared to  Ng   NIT ut Input of the user  ratio of autotrophic nitrification compared  to heterotrophic nitrification                Input of the user  ratio of heterotrophic nitrification  compared to autotrophic nitrificati
20.   possible in any case     5 5 Data safety    When a measurement is started  all configuration values are instantly stored in the  selected file  All readings during a running measurement are stored on the hard   disk as well  Then  the data will not be lost even if the PC is turned of or the  system crashes     29              TIP Please always store a safety copy of your important TIP  measurement files on another data medium  This will    prevent the complete loss of data by a failing hard disk     5 6 COM port settings    To communicate with the BaPS hardware the correct COM port must have been    selected  To do this  click on  Properties  in the menu and select the port where    the hardware is connected to     The COM port might be searched automatically as    well with the  Search  function  see chapter Find the COM port     5 7 Error messages    A debug routine is integrated in the BaPS software  This will prevent a complete  computer crash and will make quick fault analysis possible     In case of a software error the following window will open        Fehlerbeschreibung          TEST  VBPartner V6 x   SerNr   12345   Fehlermeldung    Es liegt ein Problem vor  mit dem Sie sich an den technischen Support der UMS  GmbH wenden sollten  Bitte drucken Sie den Fehlerreport und faxen ihn an      49 0 897126652 20  oder benutzen Sie die EMail Funktion  Weitere Hinweise  snwie IIndates finden Sie im Internet www ums mur de          Fehler Nr       Modul   Prozedur    Zeilen N
21.  Measured parameters  sensors  generally have errors    The following errors are significant    Ill Linearity distortion  i  e  readings differ from the calibrated incline     fll Long term shifts in the sensor characteristic     83                    Sensor stability during the measuring time  offset drift   This error enters the final    result absolutely           Noise  fluctuations of the sensors and the electronics determine the resolution   which means the maximal achievable accuracy  Noise errors can be reduced by  proper electronic and digital filters          Additionally also the absolute values of the parameters are part of the  measurement as the total number of molecules are determined  Errors of these  parameters enter the calculations as linear errors  The long term shift is relevant  as well  The required accuracy then is decisive for the calibration intervals     9 1 7 2 Pressure    Typically pressure change of 3   10 hPa are measured  The highest achievable  accuracy is 0 05 to 0 1 hPa   Then  the relative error is approx  2 96 of the  pressure change     When the headspace is determined pressure changes of approx  10 hPa appear   The achievable accuracy is approx  0 3   0 596     The typical long term shift in a year  absolute accuracy  is better than 0 596  The  sensors are calibrated to absolute 2 hPa when supplied     9 1 7 3 Temperature    The absolute temperature can be measured as close as approx  0 15 to 0 2     Temperature changes are measurable do
22.  Taking and transportation of soil samples    Bild    BaPS Kammer mit Proben       After taking the soil samples they preferably should be transported in the  incubation container closed with the transportation lid  Then  the samples are  stored in the appropriate place right from the beginning     33           Still  taking samples without the container is possible as well  Then  cover the soil    sampling rings with the supplied rubber caps and place them      the       5 container  after they were brought to the laboratory     6 2 1 Soil sampling    A main advantage of BaPS is the possibility to determine nearly undisturbed soil  samples  To get the maximum out of this option the soil should be sampled with  appropriate devices  HAR 1992      We would be pleased to consult you about available soil sampling devices  see  chapter 12 Replacement parts and accessoriesaccessories      TOP With loose soil the container might be flipped to the side  TIP  Then  the sampling rings can be inserted sideways and no  soil will fall out     Please always keep the O ring seal and the sealing surface clean     Carefully select the sampling site as this will characterise the whole measuring  result  Write down the sampling site  date  soil temperature if possible  and soil  moisture  All documented data will improve the evaluation     If possible  weigh each soil sample right away before inserting it into the container   Consider the weight of the empty sampling rings  Tara   If you do not
23.  The BaPS process is only applicable in soils which are 9       not waterlogging  In  waterlogging soils certain e  processes take place which cannot be determined by  BaPS        Content of delivery    2 Content of delivery   The following parts must be included in the delivery    This manual   CD ROM with BaPS software   BaPS container   BaPS measuring head  lid with sensor fittings   BaPS transportation lid   BaPS thermo box   6 fly nuts    spare fly nut   CO  sensor   Pressure sensor   7 stainless steel sampling rings   14 rubber covers for sampling rings   BaPS sensor interface including 3 not removable cables  Vacuum tight syringe  10 ml  incl  spare needle   2 quick lock couplings for the tempering fluid     plug kit  4 pin  for external temperature probe  3 sealing rings   20 septum  silicone  2 12 mm   Interface cable   Mains power supply cable    Sealing grease     lt   lt   lt   lt   lt   lt   lt   lt   lt   lt  S S  lt  S  lt   lt  S  lt  S  lt  S    Fork wrench  metric size 13 17       3 Initial operation    Read chapter 5 2  for the installation of the software  page 26      3 1 Connecting sensors  Remove the cables from the        and the pressure sensor and screw them onto    the proper fitting on the measuring head  Firmly tighten both sensors  Please be  careful not to damage the temperature sensor on the inside of the lid                    Place down the lid as in above picture and connect the three signal cables   Now also connect the power supply cable  
24.  Zeit 02 TiHeadspace   T Boden            2 di   1  4 05 2001 10 58 02 2087 029 942 83 33 08  32 35  000  2  4 05 2001 11 07 18  2083 030 54284 3315 3229 000  3  4 05 2001 11 17 03 2078 034 943 41 33 06 3221 0 04  4  4 05 2001 11 27 03 2074 0 35  54350 304 3220 2 08  5  4 05 2001 11 37 03 2070 028 94343 33 04 3220 013  6  4 05 2001 11 47 03 2055 041 94328 33 05 32 21 018  7  4 05 2001 11 57 03 2050 044 94319 3306 3222 022  8  4 05 2001 12 07 03 20 57 047 942 91 3309 3223 025  9  4 05 2001 12 17 03 2053 050 942 97 307 3220 030  10  4 05 2001 12 27 03 20 43 053 942 89 33 06 3219 034  Ti  4 05 2001 12 37 03 2045 055 942 75 33 07 3219 038  12  4 05 2001 12 47 03 20 40 058 94249 3310 3220 042  13  4 05 2001 12 57 03 2037 050  94226 3312 3224 045  14  4 05 2001 13 07 03 20 33 052 94248 33 06 3219 050  15  4 05 2001 13 17 03 20 23 054 942 30 3307 3220 054  16  4 05 2001 13 27 03 2026 057 941 97 3311 3223 057  12 4 05 2001 13 37 03 2021 0 83 94246 3238 3222 2 51  18  4 05 2001 13 47 03 20 18 071 94218 3301 3217  0 64   gt       A      2001 12 57 0131 2114 n 78 942 M ANAI 2217 A         Stop Hilfe                         All values shown in the table are recorded in the measuring protocol     6 6 3 Terminating the measurement    The measurement can be terminated manually when the data is regarded to be  sufficient  or automatically when the pre selected termination conditions are  fulfilled     For a manual termination follow the menu    Messen Beenden     click on the  button in the 
25.  a combination of this gas balance with the     and CO  balance  the rate of the   gaseous nitrogen compounds       N O    N         NO  contributed by   denitrification can be determined    If the total gas balance of the system  determined by the pressure measurement    is not explainable with the oxygen and CO  balance  total gas balance     oxygen   balance plus CO  balance   this balance gap must be a result of the gaseous   nitrogen compounds  N O   formed during denitrification            72                                           Theory of BaPS    Derive these correlation by the following differential equation                    ApV                            O  ACO              At Jon  OM Ju                     m                           re                        p 0  CO  L    At    4 At J   At                  RTA                AO           Z     xO       2010         40          Pole  L    polo                1   with    V  gas reservoir of soil column  cm     R  universal gas constant  JK mol   R 8 314 J     mol        temperature  K    p x   air pressure at time t x  Pa    Indices  Den  denitrification  Nit  nitrification  Res  respiration   aq  aqueous phase    By gradual resolving and substituting the main equation is obtained        ee e    Therefore          umol h   is the difference of the gas balance   umol h      CO   balance  umol h   and     balance  umol h    With an inverse balance soil    respiration and nitrification can be quantified     73    
26.  by Denitrification  and Emissions of Nitrogen Oxides from Soils  The Fertiliser Society  Proceedings  No  299  S    34                       14 Index    15N pool dilution technique    9  71  15N tracers    71    4    4 wire   16    A    Abbreviations    83  Accessories    101   Acidic  persilicic  soils    49  Ammonium   70   ASCII   59   Assembling    37   Aut het coefficient   49    B    BaPS CD   29   Barometric Process Separation    73  Bipolar    65   Buffer    65             Calculation    45  77  85  Calibration    64   Carbon dioxide   67  79  87  90  97  Carbon dioxide sensor    21  COM port   13  25          port settings    31  Condensation   19  20  38  56  Configuration register    39  Configuration window    29  Connecting a thermostat    15  Connecting sensors    13  Constants    85   Content of delivery    12    Cooling circuit    15    D    Data safety    3l   Default values    57   Denitrification   71  73  74  77  81  91  Di nitrogen    71   Drinking water    9   Dry weight    42    E    Electronic connections    37    Error calculus   85    107           Error messages   31    Evaluation window    30  56  Excel    29  60    External temperature sensor    16    F    Filter   65  Floppy disk   28  Fuse    24    G    Gain    66   Gas production    74   Gas sample   22   Graphical presentation    53  Gross nitrification    73    Gross nitrification rates   71    H    Hardware   96   Hardware description    17  Headspace    88   Headspace determination    50  
27.  easily be exported to other programs     7 4 Calibrating the sensors    61                   Sensor calibrations should      executed annually by           e engineering specialist  UMS offers the complete service for  pressure       and CO  sensors as well as the recalibration  and testing of the internal electronics  see chapter  Replacement parts and accessories      7 4 1 Calibration parameters    With the calibration parameters the digital sensor specifications of the BaPS  interface are adjusted to the physical units  Please change these parameters only  if you have adequate knowledge of the correlations    The calibration parameters for your BaPS are back upped in a special txt file  The  parameters are taken over during the installation    The sensor parameters        be viewed by calling up the menu  Calibration        Sensor specifications            e Umweltanalytische Mess Systeme   BaPS    Datei Kalibrieren Optionen Fenster      BE Sensorendaten  amp     Kalibration                7 4 1 1 Polynomial conversion    The sensor readings are converted to physical values with the use of polynomials     maximum grade 4     Enter the factors for each polynomial into the first column                                   Maintenance and service       Kalibrationsdaten       Analoge Kan  le   Digitale Kan  le         Sauerstoff  gt      Polynom              2 0  3   7    Unipolar     7 04    Buffer  18 7508 Filter  10    158252 Gain 1   0 0825389 Versorgung     0 Strom 56 p  
28.  pressure minus the vapour pressure     9 1 3 Denitrification    In the first step the denitrification is calculated  Thus  the effect is used that the    surplus of the total gas conversion rate only depends on the nitrogen compounds  which are produced by denitrification  Then  the CO  and the     portion are    withdrawn from the total rate            dn             dO   As a direct result of this rate obtain the denitrification rate by       dNO M    t  t   Mooat        2    Den    9 1 4 Soil respiration   The calculation of the soil respiration rate now is possible by using the CO   balance    It must be considered that CO  is produced during denitrification  and CO  is  consumed by the autotrophic nitrification    With denitrification the amount of the developed CO  molecules depends on the  end product    Ill For N  as end product 2 5 CO  molecules are developed    Ill              as end product 2 CO  molecules are developed     The CO  balance of the denitrification is calculated as            gen   X  ANO  whereat the factor X is obtained from     den    N den   N O       N   aen   N O    X225                                       79              With autotrophic nitrification besides            CO  is                    stoichiometric    ratio is shown by the following equation   NH    1 680    0 23          0 05C H O N   0 86        0 95HNO     The ratio         to CO  at nitrification for a purely autotrophic case then is   dO    7 3dCO  ni    Thus  the CO  consu
29.  relevance and are formed during both nitrification as well as  denitrification  The process responsible for the development of trace gases  i e   nitrification or denitrification  is described     The most frequently applied inhibitor is acetylene  In low concentration  10 Pa   acetylene restrains nitrification  By measuring the difference of the       and or    NO emission of a soil sample before and after inhibition  the quantitative  contribution of nitrification and or denitrification to this emission is determined   This method has some disadvantages    1  Individual groups of nitrifiers might be insensitive to the inhibitor    2  Indecisive distribution of acetylene in the soil sample  incomplete inhibition    Additional not recognised processes might contribute to the       and NO  development and might be identified as denitrification    For the quantification of denitrification in soils the acetylene inhibition method is   used beside the  N technique  This method is based on the fact that the final   enzyme of the denitrification conversion of nitrate to molecular nitrogen is  restrained by 10 vol96 acetylene  However  new investigations have shown that     in the presence of atmospheric oxygen with high concentrations of acetylene  NO  combined with O  converts to NO   which afterwards will disproportion into    Theory of BaPS    nitrate and nitrite  This step is not quantifiable  After this was revealed by  Bollmann  amp  Conrad  BOL  and McKenney  amp  Drury  19
30.  seal     7 3 Online sensor readings    To check the sensors readings can be taken even if no BaPS measurement is  running  Switch on the sensor interface and connect the sensor head with the    computer  Then  press    Options    current readings     in the menu     Maintenance and service       Messwerte       aktuelle Messwerte   Digitale Kanal  Messwerte   Sauerstoff  208    Kohlendioxid  0 03 pmol ml   Druck  850 08            Temp Headspace  05015 2   Temp Boden  15 02                                       Iu          kontinuierliche Messung          Loggen       Start Schie  en   Hite                     The measuring window is opened  Read the sensor data by pressing    Start        Please wait until the readings are updated before pressing    Start    again  The  readings can be updated continuously and automatically by selecting  Continuous  measurement  in the register  aktuelle Messwerte  and by pressing the    Start   button  The continuous measurement can be stop by pressing the  Stop  button   The sensors which should be displayed can be selected with the tick boxes     The readings can be written continuously in an ASCII file  To do so  select the    option  Logging             Loggen Messintervall   10 min         ums server ums F E  Bodenchemie BaP                      In the pull up menu adjust the measuring intervals and enter the file name and the  directory  Operate the readings with the  Start    and  Stop  button     The used format in the log file can
31.  soil  structure     2  Adding     tracers can cause a stimulation of the microbial decay processes   To avoid this problem it is recommended to terminate the  N tests within  two days     8 1 3 Determination of the net rate    Due to the high expenditure most investigations relating to N cycles in soils  actually do not determine the relevant gross nitrification rate  but simply the net    69              nitrification rate  ROW 1997          net nitrification describes the dynamics of  changes of the nitrate pool in soils  Net nitrification is only an inadequate measure    as it does not offer any conclusions about the gross nitrification  i e  quantitative  conversion of NH   to NO  by nitrification      For a typical determination of net nitrification rates soil samples free of roots are  taken from a measuring site  i e  for one reason to exclude ammonium and nitrate  reception by roots  but to keep up denitrification and microbial N  immobilisation    activities   Then  the soil sample is buried in a bag and incubated  usually for more  than a month  By measuring the NO  pool sizeat the beginning of the incubation    P    and at the end of the incubation the net nitrification is calculated        0     Prose 1         net nitrification related to the soil dry weight      8 1 4 Inhibition techniques    Inhibition technologies are applied in connection with the development and  emission in soils of primary         and secondary  NO  N trace gases  which are    of climatic
32.  used  Connect it with  the 4        socket on the backside of the BaPS sensor interface  Please make your  connecting cable with the supplied cable kit referring to the following connection    scheme  four wire principle      Pint   Supply   Pin3   Signal      Pn2   Signal   Pin4   Supply      4O Os Steckerbelegung Measuring principle for PT 100  4 wire         e L  tseite    Signal       Versorgung   Konstantstrom        4 Hardware description    4 1 Incubation container    The incubation container is made of anodised Aluminium  This material combines  a good thermal conductivity with high firmness and little weight                    The soil samples are taken with the seven supplied soil sampling rings  height 40 5  mm   2 60   56 mm  and placed into the borings inside the container  For  transportation  the container is covered with the transportation lid  For  measurements in the laboratory the transportation lid is replaced by the  measuring head  Please do not take the measuring head out to the sampling site to  avoid contamination or damage     A cooling duct for tempering the container is integrated in the base of the  chamber  The tubes for the tempering fluid are connected to the plastic quick   lock couplings     If you should not have a thermostat with external cooling  the closed container  might be submerge into a water bath down to the starting of the 24 pin plug  connector  but not deeper     Hardware description    Fig  BaPS in a water bath    Before submer
33.  weigh the  samples now  it still is necessary to weigh the samples before making  measurements     6 2 2 Transportation    To start a measurement as quick as possible  the container should be tempered to  the required measuring temperature right from the beginning  For this the  thermo box is very helpful as it protects the samples and the container from  heating up and from direct sunlight  If possible  pre temper the container for  example with cooling elements     BaPS measurements          For transportation put the transportation lid onto the container and tighten the fly  nuts  Screw down the nuts only slightly     6 3 Assembling the sensor head    For measurements the transportation lid is replaced by the sensor head  Please  make sure that the O ring seal and the surface are clean and in good condition     6 3 1 Installation of the soil temperature probe    Insert the temperature probe  in a slightly angular position  into the centre soil  sample  Push in the probe so deep that the start of the green coating is at the  same level as the top of the sampling rings        In      case the tip of the temperature probe        have        contact with the Aluminium bottom of the container     because then the cooling fluid would influence the  measured temperature     Form a loop and place the cable over the cylinders  Be careful so the cable will    not have contact with the fan     35                    6 3 2 Assembling the lid    The sensor head is closed with the fly n
34. 68  8 1 Nitrification und denitrification in soils                           eene 68  8 1 1 Established measuring           5               69  8 1 2 ISN pool dilution techniq  ue                  50 50R nano 69  8 1 3 Determination of the net                           69  8 1 4 Inhibition techniques            70  MEI Ic                                                          71  8 3 Detectable parameters                 2      4    4   0 nennen                      than annuis 71  8 4 Description of the measuring method                         seen 71  8 5 Individual processes    terrent tht tbe tato baa nennen 71  8 6 Relevant equitation              1        0   40021 41 4  0 0        then tn nothin ttti ei 72     UU                                                    75    Inhaltsverzeichnis    9 1 Description of the applied algorithms                         sess 75  9 1 1  Basic equation                       eara eene eerie nan 75  9 1 2 Calculating the gas conversion                                                       75  9 1 2 1  Headspace vol  rne         o rre rh n ren o cubes 75  9 1 2 2  Water volume    terrre etn          ie oes                 coals               76  9 1 2 3 Saturated vapour                                       76  9 1 2 4 Dissolved carbon dioxide                        sese 77  9 1 2 5 Dissolved                               78  9 1 2 6     Gas concentration    ti e eire iere                            FAR ERG P RES      78  9 1 2 7   Gas 
35. 7 87                          Drucken Berechnen   Zur  cksetzen                   To execute the calculation of the conversion rates  press the  Berechnen  button   Now all data are update  With the  Zur  cksetzen  button all settings can be  undone     6 7 Determination of the soil sample s water content    To increase the accuracy the water content should preferably be determined with  a gravimetric method after the measurement     The weight of the moist soil had been measured and set in the program in the  beginning  Now  dry the soil samples in an drying chamber  24 hours at 105   C           1992   When done  enter the dry soil weight      the window  BaPS      Configuration      The calculation after clicking on  Calculate  is always complete with the current  data     BaPS measurements    6 8 Data documentation and processing    A main focus has been set on the documentation as well as on the processing of    the data in other applications     6 8 1 Measuring protocol    For every measurement the measuring protocol containing all significant data and  results can be printed out directly via the BaPS software     Start the print job by clicking on the  Print  button     6 8 2 Printing results    Open the printer menu via the menu    Auswerten Drucken     or press the   Print  button __Drucken   in the window    Auswertung        or press the print icon in the task list e        Drucken                Drucker   Nums serveriHP LaserJet 2100 Series PCL         Daten Graph
36. 97   this standard  technique for the determination of the denitrification is not applied any longer     8 2 BaPS    The method of Barometric Process Separation developed at the IFU is a  completely different solution for the determination of the gross nitrification in  soils      offers the enormous benefit that neither a    dilution nor gaseous  inhibitors have to be introduced     8 3 Detectable parameters   By recording changes in air pressure as well as the O  and CO  net balances   within the closed  gas and pressure tight isothermal system containing intact well    aerated soil core  the Barometric Process Separation  ING 1999  allows to   determine the following parameters        The current denitrification  nitrificationand and soil respiration rates    e        dominating microbial process  denitrification and or nitrification  in soils  at a certain time     With consideration of supplementing investigations the rate of how much  each process is involved in the observed       emission     8 4 Description of the measuring method    In a gas and pressure tight system  in which a soil column is inserted  the following  micro biological processes are responsible for any changes of the system  pressure  Soil respiration  nitrification and denitrification  and the dynamic  equilibrium  ACO   At  of the CO  concentration      the head space            and  the CO  concentration in the aqueous phase                 8 5 Individual processes    Soil respiration is neither a 
37. Activated  and adjust  the calibration parameters to the physical units  To obtain a perfect performance    please contact UMS for assistance     An improper connection of additional sensors might       e damage the sensor interface  Only trained specialist  should do this  UMS offers an complete service     7 4 2 Digital channels    The digital channels are not used with the momentary version and therefore  are    not described        67                                   8 Theory ofBaPS    8 1 Nitrification und denitrification in soils             Pflanzen gebundener  NO   Stickstoff  organische Substanz             Mikrobielle Biomasse  Bodenatmung    Mikrobielle Aktivit  t    Figure  The nitrogen cycle in terrestrial ecosystems and definition of the terms used in    connection with N conversion processes    Nitrification is the oxidation of ammonia  NH    in soils in an equilibrium with  ammonium  NH     to nitrate         In the first step of this process  with  hydroxylamin  H NOH  being developed  molecular oxygen is added to ammonia  by the enzyme ammonia mono oxygenase  Another step of nitrification is the  oxidation of hydroxylamin to nitrite  NO     which then is oxidised to the final    product of the nitrification  nitrate                                                       5    Denitrification is the reduction of NO  under anaerobic conditions  with further  reduced N compounds succeeding and resulting in molecular Di nitrogen  N     nitrate     nitrite  gt    
38. Fehler  Geamt 02 Bilanz  umol    2312 01 74 3  Fehler  Gesamt Gasbilanz  mol    916 07 33 2  Fehler  Den  Bildungsrate gasformige N Verbindungen  umol    235 00  92 1  Fehler  Denitrifikationsrate  ug N        BTG h    678 39  265 9  Fehler  Berechnung der Bodenatmung   CO2 Bildungsrate durch Denitrifikation  zmol    548 32 215 1   Fehler  CO2 Verbrauch durch Nitrifikation  mol    12 00 21 4  Fehler  CO2 Bildungsrate durch Bodenatmung  u mol   2191 26  220 4  Fehler  Bodenrespirationsrate  ug      kg BTG h   2713 47 275 3  Fehler          Berechnung        Brutto Nitrifikationsrate                               02 Verbrauch durch Nitrifikation  umol    120 75  257 1  Fehler  Brutto Nitrfikationsratijeg      kg BTG hi  8715 185 5  Fehler  Drucken                         The first and the last valid values are used as the default values     55              In the register    Messwerte    the readings used for the calculation        be selected  with the scroll bars           Auswertung   BaPS Beispiel1 dat  Meflergebnisse                   MeBergebnisse  Nr   Zeit 02 C02 P               114 05 200 10 58 02 20 87   0 29    942 83 hPa  2 14 05 2001 11 07 18 2  3 14 05 2001 11 17 03 20 78  0 34    943 41 hPa  4 14 05 2001 11 27 03 20 74  0 36    943 50 hPa  v             130 15 05 2001 08 27 03 16 19  3 61 2  925 55          131 15 05 2001 08 37 03 16 15  3 54    925 37         15 05 2001 08 46 23                      delta Zeit delta 02              2  deltaP  21 38 24 70 3 32  1
39. Headspace volume    77    Hydroxylamin    70    Incubation container    17    Inhibition techniques    72           108    Initial function test   15  Initial operation    13  Installation   27  Interface    25    L    Limiting values    45    Literature index   108    M    Mains switch   19  Maintenance    62  Malfunction diagnosis    94  Manual termination    43  Measurement window   30  Measuring cycle    10  Measuring head    19    Measuring protocol    58    N    Net nitrification rate    72  Nitrification    9  70  74  77  93  Nitrogen cycle    70   Noise    86   Notch   65   NxOy coefficient    48          Online assistance    29  33       O ring    18  Oxygen   68  80  86  90  98  Oxygen sensor   22    P    Perforated plate   19  Photos   29  Pressure    67  86  98  Pressure sensor    21       100   21  99   PT 100 16    R    Respiratory coefficient    77  RS232 interface cable    25    S    Sampling rings    105  Sealing    18   Sensor head   36   Sensor interface unit    23  Sensor technology    20  Septum    22  23   Setups   93   Software description    27  Software structure    29  Soil respiration    73  74  77  81  82  92  Soil samples    40   Soil sampling    35    Soil water    41       Syringe    25  42  51  88  System requirements   27    Systematic error   87    T    Technical specifications    96  Temperature    66  86  99  Temperature sensor    20  36  Temperature variations    41  Tempering    38   Termination    43  55  Thermostat    15  38  103  Tight
40. K    Headspace  K      Zeit eine    Bodenwasserbestimmung    Wassergehalt  15  0     30  0   m Fehler  Anfangsgewicht    Fehler  Trockengewicht    Fehler  Spritzenvolumen    10    Fehler  pH Wert  0 5 pH      10          dad dL d       Intervall der Messung                 Start   Hilfe                   In this register all settings for the measurement and the evaluation are selected   For the correct error calculation it is essential to enter reasonable values  All  settings have selectable default values     6 5 1 1 Soil columns       Bodens  ulen  Volumen   7 x Stechzylinder    100 ml   20  E Fehler                Select the total volume of the soil samples and the volume error in this section   These values are required for the evaluation of the rates     Select one of the preset values for standard sampling rings or manually enter the  total volume of all soil samples with the unit millilitres  ml      If the rings are not completely filled manually enter the estimated total soil volume  in millilitres     Also  the error in percent  96  regarding the entered volume must be set  The  value is uncritical for the evaluation if lower than 296     39                 6 5 1 2 Temperature variations       Temperaturschwankung          Headspace Boden  K   05K     Headspace       05K 77  Zeit  keine v             The selected limits will be decisive for the moment when the measurement  should start     A sufficient temperature stability in headspace and soil is necessary for th
41. Nih  511 1 ug Nitrat Ni h kg   18363 ug CO2 m 3812 0 un CO2            4544  116 4 ug Ammonium Nih 2352      Ammonium Ni h ke   822       14  Betr                    59                 7 Maintenance and service    7 1 Cleaning the container    Clean the container only with pure water or in case of intense contamination with  a cloth and Ethanol     The sensors in the sensor head may never get wet  Clean 9     the inside of the sensor head only with    moist cloth        7 2 Tightness test    In addition to the 10 minute tightness test before every BaPS measurement     thorough test can be executed to detect even smallest leaks  for example at the  sensor gaskets   For testing gas is withdrawn from the empty container  Then  the  pressure is observed for as long as possible  After the temperature compensation  of the pressure value there should not be any changing in the pressure  The       5  should be tempered during the test to keep temperature shifts small     You may use the log function in the window    aktuelle Messwerte     see chapter  7 3 Online sensor readings   With small temperature changes   lt  0 1   C  both  measured pressure readings can be compared  The pressure increase should not  be higher than 0 1 hPa per hour  If higher  the septum and all gaskets should be  replaced  see chapter Replacement parts and accessories      The additional tightness test should be executed every 3 to 6 months or  whenever there are incidents that might indicate a leak or broken
42. S measurements    68 Messung   BaPS Beispiel1 dat Joe            User Kan  le   berechnete Werte   Tabelle                 0 00     0 00HPa     1 00  4  2 50 hPa     5 00 hPa     2 00      7 50 hPa                 10 00 hPa    d Kohlendioxid  d Sauerstoff     3 00     E  12 50hPa  0 50   4 00   15 00 hPa     17 50 hPa       0 75  C                  0 50  C Fi   45 19    2                      oc      Headspace       Mon 14        2004                          Stop Hilfe             The register    freier Sensor    routinely is not needed but is used for an additional  sensor    In the register    berechnete Werte    the continuously calculated conversion rates  are displayed graphical  Please bear in mind that these rates are based on partly  temporary values  such as water content of the soil samples   Therefore  the rates  will alternate distinctively in the beginning but will become more stable at the end            Observing the stability might be    useful information when TOP  to terminate the measurement     6 6 2 1 Presentation in tabular form    In the last register the values are displayed in a table  Move within the table by    using the horizontal and vertical Bildlaufleiste     During the measurement  valid values are marked green  invalid values are    marked red     53                                                                                                                             Messung   BaPS Beispiel1 dat  Absolut Werte  delta Werte  User Kan  le 
43. ange of 0 36 hPa  at1000  hPa and 20        Therefore  relative temperature changes have to be  measured and compensated  This is possible with approx  0 1 hPa    3  Determination of the absolute soil water content  estimated values typically  have an error of 3     5  water content  Measurements with gravimetric  methods are precise as         0 1   Thus  it must be considered that    depending on the type of soil  ultrapores  not always the whole water takes  part in the chemical processes as the CO  replacement  Also  the partial    pressure might be higher at the bottom than the partial pressure in the  headspace     9 1 8 2 Systematic error       Soil samples never        100  representative  The accuracy can only be raised  by carefully selecting the samples and increasing their number     85              2  All additionally occurring processes are neglected  Consider this especially    with waterlogging soils   3  The ratio N  N O is entered to the soil respiration    In the following this  error will propagate to the calculation of the nitrification rate  This error is    small if the denitrification rate is small     4  For the calculation of the nitrification a respirator coefficient of   is assumed   As the soil respiration rate normally is relatively large  even little deviations  can cause a relatively large error in the nitrification rate     5  The ratio autotrophic heterotrophic nitrification is not measurable and  therefore must be accepted     6  The exchang
44. ations between the start and the end of a measurement must be obeyed  additionally to the changes calculated from the ideal gas law     Table of the saturation partial pressure       1984                    0 10  20 30 40 50       hPa  2 85   6 11 12 3  23 4  42 4  73 7 23                                     S  ttigungspartialdruck Wasserdampf                                  Wasserdampfdruck  hPa                 Temp    C              The saturated vapour pressure is shown in the figure  The curve is approximated  by the following polynomial     Pag   5 295 10     T    2 003  10         1444 10          0 4536       6 093    For the calculation this portion is withdrawn from the total pressure  The  calculation is continued with the portion of  dry  air     9 1 2 4 Dissolved carbon dioxide  To receive the total balance of CO  the portion dissolved in the soil water is    needed  Then  the portion in the beginning of the measurement is withdrawn  from the portion in the end     Decisive for the amount of gas dissolved in water always are the partial pressure  and the temperature     The partial pressure is obtained from the concentration by   Poo    CO yon  R  T  273 15  100    The temperature dependence is calculated with empirically determined Henry  constant  BaPS uses the following approximate polynomial                 3 009905 10     T   273 15     0 01931 T   273 15    303553    The portion of additionally dissolved CO  is calculated as   CO  961   Vag   HK go   t    P
45. co   t                t    Pco   t        77           9 1 2 5 Dissolved oxygen    The partial pressure of     is obtained from the vol  by    Po    Vol 6        100   With the Henry constant for                 6 9509  107    T   273 15   43304  10     T   273 15    68576  10 7  the result for dissolved     is             Var           t    Pco   t     HK        t    Pco   t              amount of dissolved     is significantly lower than the amount            As the    oxygen partial pressure normally decreases during a BaPS measurement the result  for O         usually is negative      gel    9 1 2 6 Gas concentration  Essential for the calculation of the conversion rates are the gas concentrations   For     they are determined from the vol  value and the pressure   Vol   p       T  273 15        Konz      The CO  sensor directly measures the concentration     9 1 2 7 Gas conversion rates               conversion rate is calculated from the concentrations at the beginning  and at the end of the measurement and from the portion of CO  additionally    dissolved in the soil water             VpeadKONZ go   t           2                                    conversion rate is calculated accordingly     go               t     Konzo              2 gel    The total gas conversion rate which is reflected by the pressure change in the    system is calculated as        2 gel    dn c 100  Mens         ptt             R T t    273 15 T t    273 15       whereat the pressure is the total
46. configuration window 28        or click on the termination icon         If termination conditions were activated the program will ask whether the  measurement should be terminated after they have been fulfilled    The termination of the process must always be confirmed  This safety request  should prevent an unwanted termination and give the user the possibility to verify  the achieved data first     After the termination of the measurement the evaluation window is opened  automatically        54                                         BaPS measurements    In general  all data of the measurement or the configuration can be adapted  afterwards  To do so just call up the measurement file  The affiliated configuration  and measuring windows are then opened simultaneously     v After the measurement you must always take of the 9     sensor head to avoid condensation      the sensors  The     sensor head and the incubation container should      stored   in a dry place and without soil samples     6 6 4 Evaluation window    In the evaluation window the calculation of the conversion rates can be retraced     Also the readings which should be used can be selected           Auswertung   BaPS Beispiel1  dat  MeBergebnisse   MeBwerte         Berchnung der Denitrifikation                                                                         CO2 gel  st in Bodenwasser  umol   250 02 11 2  Fehler  02 gel  st in Bodenwasser  umol   3 27 0 2 Fehler  Gesamt CO2 Bilanz  umol   1630 94 42 3  
47. conversion                                 ainin enne ennt enne enne 78  9 1 3     Denitrification iii sete eben    omega                            79  9 1 4         respiFation    i orent terae tetra eter                        79  9 1 25  Nitrification rate                                8l  9 1 6 Abbreviations used in                 5                     8l  9 1 6 1 Index of variables                  sese 8l  9 1 6 2   Readings i    entrer E RR EXER                  82  9 1 6 3                                                                                                                     83  9 4 7 CError Calculus          ret                         83             Sensorer ors                                          83                                                 RE US 84  9 1 7 3                                     c mec ecrit enean Du re EES a               84  9 1 7 4  A 84  9 1 7 5   Carbon dioxide                85  9 1 8 Further error                                          nnne entana i 85  9 1 8 1 Measuring technique    enne 85  9 1 8 2  Systematic ebror user rtr enhn ee Se              85  9 1 9 Notes to error calculation                                                  86  9 1 10 Headspace measurement                                                     86       Water                            aa eiaa riaa      87  9 1 12 Dissolved                                                                  87  9 1 12 1 Partial gas                                
48. dry weight the sample is dried in an oven for at  least 24h at 105         As recommended for example by  HAR 19921      Error calculation for method 1       2 2  AV    Von     Abs F E  1      WG    Error calculation for method 2              2 2  AM              AMgoa      9 1 12 Dissolved gases    9 1 12 1 Partial gas pressure    The partial gas pressure is required for the calculation of the solution of the gases  in the soil water  The error for the partial pressure of CO  is described below     The calculation for oxygen is the same               Poo    AVol  co     The error in vol96 cannot be adjusted by the user  For CO  the error is 0 02  vol96  for oxygen 0 03 vol96     These errors are related on the stability of the sensors during a typical measuring  time of 5 to 10 hours  In the following calculations they are entered into the  estimation for the second term in the root     87                 9 1 12 2 Dissolved carbon dioxide    The amount of dissolved gas in the water has an linear dependence on the  quantity of water and on the partial pressure of the relevant gas  More complex is  the dependence on temperature which is determined experimentally and  expressed with the Henry constant  Despite it is called a constant there is an  dependence on temperature  For the BaPS calculation this function is  approximated by an polynomial     Another error source is that the partial pressure throughout the soil is not exactly  the headspace pressure everywhere   These err
49. e   49     0 89   12 66 52   17      5 8 Online assistance   The integrated online assistance in PDF format can be viewed with the Adobe  Acrobat Reader  Call the assistance files by pressing the Fl button on your  keyboard or via the  Help  menu in the BaPS software    If the Adobe Acrobat Reader should not be installed in your system download the  set up files from the  Acrobat Reader  directory on the BaPS software CD ROM   To do so  read the  ReadMe  file for your OS in the  Acrobat Reader  directory    and follow the installation instructions     3                5 9 Info    Click on  Info  in the  7  menu to view the software version and further system  information        Warnung  UMS GmbH hat diese Software mit gr    ter  Sorgfalt und nach bestem Wissen erstellt  F  r die  richtige Funktion der Anwendung kann UMS GmbH    trotzdem keine Gew  hr   bernehmen  Systeminfo         Copyright 2000 UMS GmbH M  nchen                _       32                                         BaPS measurements    6 BaPS measurements    In this chapter the BaPS measurement including all possible options is described   The reader will get a comprehensive instruction on how to execute  measurements     6 1 Requirements for reliable measurements  Ill Sufficient temperature stability in headspace and soil          Gas  and water tight system    Ill Sufficiently vented soil     Ill Knowledge of the weight of the empty sampling rings to determine the weight  of the soil samples themselves     6 2
50. e  The CO  sensor offers    0    2 5    signal for the range of 0   3 vol      Die optimum configuration is shown in the figure     65              Kalibrationsdaten         Analoge Kan  le   Digitale Kan  le             Kohlendioxid v      Polynom  a b   cx2 dx3        0  0 4924             7 4 1 6 Oxygen       Dk   Abbrechen   Hilfe           Unipolar     Buffer   Fite  0 00  Gain   1     Versorgung     Strom 56 p                          sensor has    4   20 mA signal which is not linear and specific for each    individual sensor  Shown below is    typical configuration which might vary slightly    from the one in your program        Kalibrationsdaten         Analoge Kan  le   Digitale Kan  le         Sauerstoff v       Polynom  a b  x cx2 dx2                 8758     158252   0 082539            aan                    7 4 1 7 User channel           Unipolar     Buffer    Filter     0  Gain     bd    Versorgung      Strom 56 p         Dk   Abbrechen   Hilfe      Maintenance and service       Kalibrationsdaten       Analoge Kan  le   Digitale Kan  le         UserKanalA AIN6        Polynom  a by cx2 dx3              pon 2           Unipolar   Aktiviert       Buffer   Filter  ho   3  Gain   32 E  Versorgung     Strom 56 p   v    Ok Abbrechen Hilfe             Up to three additional sensors may be connected to the sensor interface  see  chapter 4 3 BaPS sensor interface   The readings of these sensors can be recorded  by the BaPS software as well  To do so  select the option  
51. e  implementation of a measurement  The temperatures are measured every  minute  Within a period of 10 minutes the deviation of all 10 measured values  must be within the selected limit  Thus  the start of a measurement will be  delayed for at least 10 minutes unless it is started manually     If a time limit is entered  the measurement always will start after the selected time  period has passed  Also  the measurement can be started manually at any time     Even when evaluating the readings afterwards the starting value can be changed to  a later time  Therefore  preferably select a temperature variation limit which is  rather to high than to low     ANFO The temperature variation is controlled during a running INFO  measurement  If deviations larger than the selected limits  occur  the program sends out a warning     6 5 1 3 Soil water determination                   Bodenwasserbestimmung   Wassergehalt  15 Volz    3 0 Yol  Lr Fehler  Anfangsgewicht  mr Fehler  Trockengewicht         emi Lr Fehler                nn    BaPS measurements    Enter the water content and the initial net weight  i  e  without sampling rings  of  all samples before a measurement  The program will then calculate the dry weight  of the samples     To reach a better accuracy the dry weight should be determined with gravimetric  methods after the end of the measurement  If you enter the dry value then  the  water content will be recalculated automatically  All evaluations will then be  executed with t
52. e of the soil gas with the headspace gases will never be  complete     9 1 9 Notes to error calculation    111 The not systematic errors  sensor errors  are considered to be typical but not  severe  If the absolute values are not exactly known  plausible values are used for  the calculation          In sums the absolute values are added as root sum square values        In multiplications the relative errors are added as square values     Ill The systematic errors cannot be captured by the error calculation  In case the  user has to estimate them himself     9 1 10 Headspace measurement    The assumed error for the absolute pressure is 5 hPa     Ap   When 10 ml is    withdrawn the pressure will decrease for approx  10 to 12 hPa This pressure  difference can be measured as precise as 0 2 hPa     Ap    The typical error of an    syringe is approx  1   Then  all errors have about the same quantity  The  headspace can be determined with an accuracy of 296     Both accuracies  Ap and Ap   of the pressure measurement cannot be adjusted by    the user     9 1 11 Water content   The water content can be determined with two methods      By the water content of a known soil sample volume   2  Bythe weight of a moist and a dry soil     As the water content cannot be measured better than 2 vol96  even with special  moisture probes  the second method is much more precise and therefore  should  be applied  Also  the results are based on the true weight     For the determination of the soil 
53. enhandbuch Bodenmikrobiologie  Ecomed  Verlag    BOL1997  Bollmann A   Conrad      1997   Soil Biology  amp  Biochemistry 29 7  S   1067 1077     BRO 1989  Brooks P D   Stark M J                    B B   Preston T  1989   Diffusion  Method to Prepare Soil Extracts for Automated Nitrogen 15 Analysis  Soil Sci   Soc  Am  J  53  S  1707 1711     DAV 1992  Davidson E A   Stephen C H   Firestone M K   1992   Internal Cycling  of Nitrate in Soils of a Mature Coniferous Forest  Ecological Society of America  73 4   S  1148 1155   HAR 1992  Hartge K   Horn R   1992   Die physikalische Untersuchung von  B  den  Enke Verlag     ING 1999  Ingwersen J   Butterbach Bahl K   Gasche R   Richter O   Papen H      1999   Barometric Prozess Separation        5   New Method for Quantifying  Nitrification  Denitrification and N O Sources in Soils  Soil Sci  Soc  Am  J   S  117     128   LIL 1984  Liljequist G   1998   Allgemeine Meteorologie  Vieweg Verlag     MOS 1993  Mosier A R   Schimel D S    1993   Emission of N Oxides from Acid  Irrigated and Limed Soils of a Coniferous Forest in Bavaria  R S  Oremland  ed    Biogeochemistry of Global Change  Radiativly Active Trace Gases  S  245 260     ROW 1997  Rowell D L    1997   Bodenkunde  Springer Verlag     SCHE 1998  Scheffer F   Schachtschabel P  et al   1998   Lehrbuch der  Bodenkunde  1998   Enke Verlag     SCHL 1992  Schlegel H G    1992   Allgemeine Mikrobiologie  Thieme Verlag     SMI 1990  Smith K A   Arah J R M   1990   Losses of Nitrogen
54. eptum defined amounts of gas can be withdrawn or added  which is  required for the headspace determination     ANFO The withdrawn gas sample might be used for further  NFO  determination or for calibration if it is tested with an gas  chromatograph Please observe that withdrawing gas from  the system will reduce the system pressure     Please replace the septum regularly to assure the gas tightness of the system   after approx  20 times of sampling   Push through a different spot on the disc  each time     21          Gewindestopfen    EH AnpreBring  mm Silikonscheibe       Screw off the holed thread plug for replacing the septum     metric size 17 fork  wrench or adjustable wrench is required  Remove the silicone disc by pushing it  out from the inside through the boring  Now  press in a new silicone disc  replace  the contact pressure ring and tightly screw on the holed thread plug  see figure      4 3 BaPS sensor interface unit    The job of the sensor interface unit is to convert the analogue sensor signals to  digital signals and to communicate the computer                    For questions regarding the electronics of the sensor   as interface please contact Mr  Andreas Steins  graduate  engineer  by e mail  as ums muc de  or telephone   49   0 89   12 66 52   18      The enclosure is a standardized plug in rack for easy maintenance and removing    of the components         2                                          Hardware description    Use the proper mains power supp
55. eungstale duch Deni  kaion  unol   5032  Fehler                   Ferier CO2Vebrauch durch Nitkaton kina 1200 A  Fener          Eos 2 CD2Bikuncerae ch Boderatmung       Fa Fehler                                           Em      o                2734 m  pet    DENS                Berechnung der Bruto Nitifkatonsrate          Interval      Messung  CZ etbauch          Niniikation mol 12075                               Brutto N  rfikationsratug N   kg BTG hl  8715                    Drucken                       0 01 2002   158       Select your own options for the intercept of the ordinate and the time gap in the  graphical presentation  Click with the left mouse button on the unit axis for auto   scaling or formatting  The time axis can be zoomed by drawing over the  requested time gap while the left mouse button is kept pressed  Click on the  window with the right mouse button and select  undo zoom  to cancel the  zooming     The absolute and the delta values  i  e  the changes of the values since the start of  the measurement  are displayed in two separate registers  There  the continuing  changes can be reviewed the best  The graphical presentation allows to recognise  runaway values easily     For displaying the absolute and the delta values not the raw sensor values are  used but the O  and CO  dissolved in the soil water solution is calculated as well   Thus the factual changes of      CO  and respectively the pressure are displayed  more accurately        52 aa    BaP
56. for example water    content  sampling size etc           Starting terms when the measurement should start     28        A    Software description          Stopping terms when the measurement should stop     Measurements are started from this window  Then  the measurement window  will open automatically     T      To carry out standard measurements previously defined TIP  and stored configurations can be reloaded  see chapter 6      5 4 2 The measurement window    In this window all readings and the calculated conversion rates are displayed  online  This offers the user the possibility to check the plausibility of the readings  right away during a measurement     The readings are displayed as a table and a graph  In case a stopping term is  reached or the measurement is stopped manually  the evaluation window is  opened automatically     5 4 3 The evaluation window    When the measurement is completed the evaluation window opens and displays  the calculated values  In this window the used reference points could be adjusted  again as well a the preset parameter     Whenever a completed measurement file is opened  the       5 software will also  automatically open the evaluation window  This offers the possibility to adjust a  measurement even later  for example input of a different water content  dry  weight  etc       If    measurement is not completed and the evaluation has not been executed  the  program will ask if this measurement should be stopped  The evaluation will be
57. ging the container the lid must be closed  tightly or the sensors might be damaged by permeation of  water     99    Please      careful not to damage the sealing surface for the  O ring seal     4 1 1 Sealing       Before closing the lid be sure that the sealing surface and     e the O ring seal are clean and in proper condition to assure     a gas tight sealing     The O ring seal is made of NBR  butadiene acrylonitrile rubber   features are  shore hardness 50  gas tightness  abrasion resistance and stability against most  chemicals  Whenever the O ring seal should have a damage  it must immediately    must be replaced     FOP To approve the sealing the surface and the O ring seal TOP  might be covered thinly with vacuum grease  Then  as the  grease will complicate the cleaning  you must avoid  contaminations even more          8       Both lids        fastened with the 6 fly nuts         transportation it is sufficient just to    screw down the nuts slightly  Before taking measurements screw down the nuts  steadily and crosswise so the lid has a form fit seat on the container  Fasten the  nuts only hand tight and do not apply force     ANFO Note that the durability of the O ring seal is considerably INFO  reduced by UV radiation  sunlight      4 2 The measuring head    The measuring head incorporates the sensors  the septum and the ventilator  The  sensors are protected by a perforated plate on the inside of the measuring  head Fehler  Textmarke nicht definiert            
58. he INFO  F1 button or through the Help menu  please read chapter 5 8  Online       27                 If you should need further assistance regarding the  software  Mr  Thomas Pertassek  graduate engineer   would be pleased to support you  Please contact him by e     mail  tp Qums muc de  or phone   49  0 89   12 66 52    17      5 3 Additional files on the BaPS CD  Besides the       5 software the following files are added on the CD     77 This user manual in Acrobat Reader format   pdf         77      Excel   program including the calculation as executed by the BaPS  software  Here you can follow the routine step by step and carry out  changes    777 Photos of the BaPS system in jpg  und tif format  Be free to use them for    your publications     77 The current Acrobat Reader for viewing  pdf files        77        Windows Installer for several operating systems     5 4 Software structure    The program is divided into three different windowsFehler  Textmarke nicht  definiert   These windows reflect the different sections of BaPS measurements   Find a detailed description of each function in chapter 6 BaPS measurements     5 4 1 The configuration window    In the configuration window all set ups required for measurements are adjusted   For all parameters predetermined values are already set  These can be  customised by the user depending on the needs of each measurement     The following parameters can be adjusted     Bl  Required information regarding the measurement  as 
59. he new values     For the later change of the dry weight value the measuring file must be opened               parameters water content and dry weight are         interdependent  If one value is changed                the     other value as well as it s error are recalculated  For  evaluation  always the latest values are used     6 5 1 4 Further settings             Spritzenvolumen  10m    10  7 Fehler  pH Wert  5 pH  v  10 5 pH Lm  Intervall der Messung  10min                     The volume of the syringe is required for the determination of the headspace  A  10 millilitre syringe is supplied as standard  The syringe should be calibrated and  have a possibly low tolerance  typical 196   As this tolerance is part of the  headspace determination it influences the complete evaluation     The pH value of the soil sample is required for the evaluation of the dissolved CO   in the soil solution     Select in what intervals readings should be taken during the measurement  After  each interval the termination values are verified  For a correct measurement only  the starting and stopping terms are required  Still  to have a good signal stability  and to control the quality of the measurement there should be at least 10 reading  events within the measuring duration  The default value is 10 minutes     41 e                6 5 2 Register Termination Conditions       e Konfiguration   BaPS          j  Information   Spezielle Parameter         Konfiguration   Beenden der Messung    Schwe
60. icient of 2 3 should not be changed  This    value is typical for soils     FOP For the ratio any value might be selected  For example    TIP  ratio of 1 2 is the same as 2 4 or 3 6  Rating a final  substance as 100  should be avoided as this is not  realistic for any processes     The higher the denitrification rate is  the more important it is to know the ratio as    accurate as possible      47                 6 5 4 2 aut het coefficient                   autotrophe Nitrifikation  3    heterotrophe Nitrifikation   1 r   aut het Koeffizient  0 750 010  a Fehler          Select the ratio of autotrophic to heterotrophic nitrification in this fields  This  information is required for the CO  balance  as autotrophic nitrifiers  contrary to    heterotrophic  can bond CO      Heterotrophic nitrification is predominant in acidic  persilicic  soils as forest soils   but autotrophic nitrification for example in arable soils     Select the ration as for the NxOy coefficient  The automatically calculated aut het  coefficient is between 0 and 1  Then  1 means 100  autotrophic nitrification  and  0 means 10096 heterotrophic nitrification     6 5 4 3 Error of dissolved gases       Fehler geloste Gase       ACO  Henry  40                  Henry  80  7                   Here the error for the calculation of the dissolved gases can be adapted  As this is  an added up error it should only be modified if there is a essential reason  see  chapter 9 1 12 Dissolved gases      6 6 The measurement
61. ik Abbrechen        Konfigurationsdaten   absolute Me  werte       Berechnung    delta MeBwerte     Me  werte   berechnetet Werte                      In this menu the options for printing data or graphs can be set   The following option are selectable    Configuration data     prints all configuration data    Calculation  Prints all results of the calculation    Readings   Prints all readings including time stamp     Absolute  delta  calculated readings    Prints the selected graph     57              6 8 3 Exporting to other applications    For each measurement the       5 software creates a measuring file which is stored    with your selected file name        Please do not change any original measuring files as then     e the BaPS software will not be able to open these files                  In the measuring      all settings  readings and results        stored         used format  offers the possibility to export the data to other applications easily           ASCII format    Ill Separator  semicolon    Bodens  ulen   Volumen  Fehler    Fl  che  Fehler  Temperaturschwankung  Boden  Headspace  Zeit  Bodenwasserbestimmung  Wassergehalt  Fehler   Bodengewicht feucht  Fehler   Bodengewicht trocken  Fehler  sonstige Parameter  pH Wert  Fehler   Spritzenvolumen  Fehler   Messintervall   Schwellwerte   eine Bedingung   O2  CO2  P    Zwei Bedingungen   O2  CO2  P  Standardabweichung  Nitrifikation    Denitrifikation   Bodenatmung   Zeit   Abbruchzeit   Spezielle Parameter      0
62. iration can    be calculated as        AdCO                 AdCO   p    AdCO  gon    2 res    The calculation error for the soil respiration rate then is               90                         4                9        AdCO        AdCO  2    9 1 17 Nitrification rate    The error in the calculation of the oxygen conversion by nitrification is                2                     P ARK    RK           ses RK                                   Finally  the error of the calculated nitrification rate is     2 2  AdO  i                gt    dO                             E k    9 1 18 Setups before a measurement    AN     sp ml Syringe volume  millilitres   AWG 96  Estimated  error of water content  Aaut het Error in the ratio of autotrophic and heterotrophic   nitrification   ANJ NZO Error      the ratio of       for denitrification             Soil sample volume  millilitres   ACO2Henry Added up errors for calculation of dissolved CO   AO2Henry Added up errors for calculation of dissolved      AMBod f Error for the initial weight of the moist soil  AMBod t Error of the soil dry weight                   Malfunction diagnosis    10 Malfunction diagnosis    The difference of headspace and  soil temperature is much higher  than usual     No linkage of computer and BaPS  electronics is possible     The CO  sensor continuously reads  3 vol                   5 measurement does not  start     The BaPS cannot      switched on     The sensor readings are garbage        Check if the fan i
63. ize the absorption of infrared light at  certain spectral ranges  CO  molecular pulsation   This makes them very stable    and selective     The CO  sensor is also connected to the electronics with an individual plug  connector  The CO   Sensor must always be connected to the electronics before    turning on the system     A recalibration should be performed once a year  see chapter 12 Replacement  parts and accessories      4 2 1 4 Oxygen sensor  The oxygen is measured with a ZrO  sensor with a range of 0     25 vol   The    principle of this sensor is that  at a temperature of approx  350 to 500  C  ZrO  is        20                                          Hardware description    able to transport oxygen  The sensor must be heated and therefore  needs about  10 minutes for heating up and to reach full capacity     Then  when a constant voltage is applied  the current will change in dependence  of the volume percent of oxygen in the measured gas     The oxygen sensor has a typical working life of at least 5 years and must not be  recalibrated  A functional test would be to measure normal air where the  measured value should be approx  20 8 to 20 9 vol         Never change the length of the oxygen sensor cable  This        would change        heating voltage and the sensor     calibration would      falsified     4 2 1 5 Septum    The Septum is integrated in the measuring head and consists of a silicone disc  a  contact pressure ring and a holed thread plug     Through the s
64. le Kanal    Messwerte     lt      Sauerstoff  208    Kohlendioxid   0 03                Druck   850 08           Temp Headspace  fioc 2  Temp Boden  fioc      541   I   I  lt I                  kontinuierliche Messung          Loggen             Start Schlie  en   Hie               Close this window as in all Windows programs by clicking on the x in the  upper right corner or on the  close  button     3 4 Connecting a thermostat    3 4 1 Cooling circuit    If you have a thermostat with an external cooling circuit connect the two supplied  female quick lock couplings to the tubes of your thermostat  The couplings will fit  on tubes with an interior diameter of 6     6 2 mm     Plug on the tube couplings to the male couplings on the BaPS container  Press in  firmly until the coupling clicks in  If the tubes are removed or in case the couplings  get loose internal valves will prevent cooling liquid from leaking out     Push down the metal clip on the coupling to remove the tubes                                Initial operation       Depending      the type of thermostat the external circuit 9  e must be closed for starting operation  In this case     connect the thermostat with the       5 couplings before   turning on the thermostat     Please observe the instructions in the manual of your thermostat     3 4 2 External temperature sensor    If your thermostat has a controller option for an external PT100 temperature  sensor  the internal       5 soil temperature sensor could be
65. ll cause a negative pressure inside the container  Then  to lift of the lid   some air must be added     25              5 Software description    With the supplied BaPS software the user is able to adjust all set ups and execute  control and service routines     The software will run under Windows   95 98 ME  Windows   NT 4 0   Windows   2000 and Windows   XP     5   System requirements        Pentium 166 or higher  recommended    111 32 MB RAM memory  recommended    111 10 MB free hard disc memory  necessary    Ill Free RS232 interface  necessary          Graphic  800 x 600  65 536 colours  recommended     Ill Mouse  necessary     5 2 Installation       In order to execute the installation properly  your system     must use the            as       decimal separator  Before  starting the installation check or change your system  settings  Regional settings in the Windows system set up                     easiest way to install the software would be to call up the       BaPS msi     directly from the CD  either with the Explorer or from your desktop  Select your  CD drive and double click on  BaPS msi   Then  follow the instructions on the    screen     If you cannot execute the file  BaPS msi  you might need a current version of the  Windows Installer   by Microsoft  This program you will find on the BaPS CD in  the file directory  Windows Installer   Select your operating system  start the  installation file and follow the instructions  After the successful installation  co
66. llenwerte                eine Bedingunge erf  llt  zwei Bedingungen erf  llt      Ao   20Vol     AQ   15  0     ACO   15  0         Aco   10  0  x           10 0 hPa x          15 0 hPa v                       Fehler bei der Ratenberechnung  Nitrifikation  keine  gt    Denitrifikation  eine X  Bodenatmung                Zeit keine                      Start Hilfe                               In this register set the threshold values or the requirements for accuracy which  will initiate the automatic termination of the measurement  If no termination  conditions are selected  the measurement must be terminated manually  The  default setting is manual termination            Before a manual termination you can check the readings TIP  online to find out if the readings have changed sufficiently   For the evaluation of the conversion rates  any readings  can be used     In principle  The larger the changes in the starting and stopping readings are  the  more accurate the measurement will be  as then the influence of the sensor  inaccuracy is reduced  Therefore  measurements should not be terminated to               BaPS measurements    soon  If the system is not running to capacity  it is recommendable to extend the  measurement and terminated manually     With larger changes not only the results are improved but the measurement will    take longer  How long will depend on type of soil  temperature  water and  fertilizer content and other measures     ANFO The error calculation de
67. ly cable  The mains switch is on the backside of  the enclosure  As soon as the interface is switched on  all connected sensors in  the measuring head are supplied with power  When turned on  the diodes on the  mains power supply and on the plug in module are lightened     A 230 Volt   max  1 ampere quick acting fuse is integrated in the mains power  supply module  Find a supplied spare fuse in the fuse box  For replacement   disconnect the power cable first  Then  pull out the fuse box by pushing the snap  cap upwards  Replace the fuse and push back the fuse box        Only expert electronic personal should open the        enclosure  Before opening always disconnect the mains     power supply cable first                    The measuring head is linked to the interface unit with three cables which are  inseparably connected to the interface enclosure  To prevent false connections  each plug is of a different type  Connect all plugs to the measuring head before  switching on the interface  This is required for initializing the sensors     If required  it is possible to connect up to three more sensors  Please contact  UMS if you need assistance     There are three plug in modules in the interface enclosure     23                          The mains power supply module   Ill              and     amplifier module     Ill The BaPS electronics module     Connect the supplied RS232 interface cable to the RS232 interface plug which  located on the front side of the BaPS module  If yo
68. mption of the autotrophic nitrification can be calculated  The    base for this is        The soil respiration does not contribute to the total gas balance as the amount  of consumed O  is equal to the amount of produced CO   This is only valid for    a respiration coefficient of 1      2  The ratio between autotrophic and heterotrophic nitrification is known   Then the portion of CO  consumed during the nitrification can be calculated by    withdrawing the portion of the denitrification   1  00    Y   dn     dCO  sen   dNO     with    NIT     aut    NIT           With this the calculation of the CO  conversion by soil respiration is possible             x         T         ni E         gen    The soil respiration rate then is     Moo               pL  T iig   n t                9 1 5 Nitrification rate    For calculating the nitrification rate the oxygen conversion of the nitrification is  required  Therefore  the oxygen conversion rate of the soil respiration has to be  determined first     dCO  RK dO    2res     2 res    The oxygen conversion of the nitrification then is     ACO  res    dO  rit   dO  RK    and the nitrification rate          zo      nit            t  Ma  t D Miss    9 1 6 Abbreviations used in formulas    9 1 6 1 Index of variables                                              co  gel mmol       additionally dissolved in water  between start and end  of measurement           mmol Total CO  conversion rate   9      den CO  conversion by denitrification   dCO
69. ness test    50  62   Total gas balance    74  Transportation    34    V    Vapour pressure    78  Variables    83    W    Water bath   18  Water content   42  58  89    Water volume   78    X    X factor    81    109           15 Contact    General product information   Dipl  Ing  Thomas Pertassek  Tel     49  0  89 12 66 52   17   Fax     20  eMail  tp Qums muc de  UMS GmbH   Gmunderstr  37   D 81379 M  nchen    Hardware   Dipl  Ing  Andreas Steins  Tel     49  0  89 12 66 52   18   Fax  20  eMail  as ums muc de    UMS GmbH   Gmunderstr  37   D 81379 M  nchen    Software   Dipl  Ing  Thomas Pertassek  Tel     49  0  89 12 66 52   17   Fax   20  eMail  tp Qums muc de  UMS GmbH   Gmunderstr  37   D 81379 M  nchen    Scientific inquiries   Dr  Klaus Butterbach Bahl  Tel     49  0  88 21 183   136  eMail     Forschungszentrum Karlsruhe   Institut f  r Meteorologie und Klimaforschung    Kreuzeckbahnstr  19   D 82467 Garmisch Partenkirchen               16 Notes    Zee                 1                      2000  2002 UMS GmbH M  nchen  Gmunder Str  37  D 81379 M  nchen  Tel   49  0  89 12 66 52 0  Fax  49  0  89 12 66 52 20    www ums muc de BaPS  BaPS ums muc de    The IFU has applied the patent for the BaPS Barometric Process Separation      the  company UMS GmbH is the only license holder for this system        L LL    
70. net gas producing nor consuming process  i e  the net  gas production An At   0  because the amounts of oxygen consumption and CO     ie       production are identical  provided the respiration coefficient equals 1 0  as it is the    case in well aerated soils     Nitrification causes a pressure decrease in the system  since 0 5 mol molecular  oxygen per mol ammonium is consumed  but no gas is produced     Denitrification however causes a pressure increase since no gas is consumed  but   beside N   an additional amount of 2 5 mol CO  is contributed during the    complete reduction of 4 mol nitrate to 2 mol molecular di oxygen     8 6 Relevant equitation    If a net pressure decrease is observed  nitrification in the system is predominant   Therefore  a pressure increase indicates that denitrification is the dominating  process  The three micro biological processes can be described by the following  reaction equations     a  Soil respiration     CH O       am       am   H O  pressure neutral     2        2 Atm  b  Nitrification     NH     20  ne  gt  NO    H O   2H   pressure decrease     2 Nit  c  Denitrification     5CH O   4NO    4H   gt  5      p     7H O   2N     2 Den   pressure increase    CO  and     concentrations  optionally       concentrations  in the headspace   over the soil samples are measured at the same time as the system pressure    By measuring the system pressure changes the total gas balance An At  umol h      of the four processes can be determined    By
71. ntinue to install the BaPS software as described above            26                                           Software description    1  Baps          Willkommen beim Installations   Assistenten von BaPS  5  27    Der Installer wird Sie durch die zur Installation von       5 notwendingen Schritte f  hren     Klicken Sie auf  weiter   um fortzufahren     ACHTUNG  Dieses Programm ist durch US amerikanische Urheberrechtsgesetze und  internationale Urheberrechtsvertr  ge gesch  tzt  Unbefugte Vervielf  ltigung oder unbefugter  Vertrieb dieses Programms oder eines Teils davon sind strafbar  Dies wird sowohl straf  als auch  zivilrechtlich verfolgt und kann schwere Strafen zur Folge haben     Abbrechen 1 Weiter                ANFO In case your system misses too many DLL s  Dynamic Link  NFO  Libraries   the set up program will install those DLL s first  and then will require for a re start of the PC  Re start the  PC first and then continue with the installation     FOP When installing the program to a Windows   NT  TOP  Windows   2000 or Windows XP system  it might be  necessary to have administrator rights  Please contact  your system administrator in case of errors     If you should not have a CD drive on your PC  please ask us for the installation  program on floppy disk  Please note that the additional files listed in the following  chapter are not included on the floppy disk due to too high storage requirements     ANFO Call up the implemented online assistance by pressing t
72. on    tabular form                                53  6 6 3 Terminating the                                         54          6 6 4 Evaluation                          2 000040200   0 00                                                         55    6 7 Determination of the soil sample s water content    56  6 8 Data documentation and                                      04  8   4  8      57  6 8 1 Measuring protocol    eene enne nnne enne enn 57  6 8 2  Printing results    rernm tate e Fei E Peer        57  6 8 3 Exporting to other                                         58  6 8 4 Calculations with Excel                               59  7 Maintenance and service                  eee entente nette tnnt              60  7   Cleaning the                                                     nennen rennen 60  7 2  Zlightnesstest        60  7 3  Online SeNSOr readings    temor e P ERR ERR Rd 60  7 4 Calibrating the sensors    nene nennen nennen 61  7 44 1 Calibration parameters                   essere enne nennen 62  7 4 1 1 Polynomial conversion                62  7 42   lF  rther optlons 1  oerte rre ger             63   I MEME DIC Aet 64  TANA D                               65  7 4 1 5  Garbon dioxide            erint eiseni aini rai ee 65  TANG    OXY BOM                 66  TAMA    USEF CHANNEL               66  7 4 2 Digital                                                                                                        67  8  Theory ot BaPS     ere                 
73. on   Beenden der Messung  Information    bodenspeziifische Parameter    5         N50  1       gt   2 r   NxOy Koeffizent  2 333 0 05   Fehler  autotrophe Nitifikation   3 Fe  heterotrophe Nitrifikation   1 p  aut het Koeffizient  0 750 010   Fehler  Respirationskoeffizient  1 00     005   Fehler    r Fehler gel  ste Gase          Henry  40                      80  5       Start Hilfe                                     BaPS measurements    In this register the soil specific parameters and coefficients for the three processes  are selected  as well as the errors for the calculation of the dissolved     and CO      The higher the relative share of a process to the total gas conversion is  the more    crucial the selected values for this process are     Select reasonable values for each error so the total error will not be falsified   Enter absolute errors that refer to the relevant coefficient     6 5 4 1          coefficient          i  ES  N50  1 zi  N5   2 zd  NxOy Koeffizent  2 333 0 05   Fehler          In this dialog the ratio of both final substances of denitrification      and        is    selected  This information is required for the evaluation of the total gas balance  because per 5 mol CO  either 2 mol     or 2 5 mol       can develop  see chapter    9 1 3 Denitrification   The coefficient shows the mol amount and therefore is  between 2 and 2 5  The coefficient is calculated by the program regarding the  selected ratio    If the ratio is not known the preset coeff
74. on   O2 gel mmol O  dissolved in water  between start and end of  measurement    Pco2 hPa Partial pressure CO                 Partial pressure       RK Respirator coefficient O7 CO during soil respiration   Vaq ml Water volume   Vbs ml Soil samples volume   Vhead ml Headspace volume   Vsp ml Syringe volume   WG   Water content   x Factor  amount of       developed during denitrification  compared to NO gases   Y Factor  amount of CO  degraded during nitrification   compared to O5        9 1 6 2 Readings         vol96               82                                        vol     CO  volume percent       vol  1  vol      volume percent             Pressure   Pan hPa Initial pressure at headspace determination  Per hPa Final pressure at headspace determination   t H Time   T t    C Temperature at beginning of measurement  T t       Temperature at end of measurement       g Weight of soil samples    9 1 6 3 Constants    M  sz g Mol weight of CO   44 009       g Mol weight of nitrogen  14g   R J  K mol  molar gas constant  8 3143 J  K mol      9 1 7 Error calculus    In all calculations regarding BaPS certain principle uncertainties occur  which are    unavoidable  These are among others for example the respirator coefficient   1   the quantity of the ratio between N  to       during denitrification  or additionally    developing gases  i  e  further processes appear   Therefore  in any case the final  results should be verified if they are conclusive     9 1 7 1 Sensor errors  
75. or are expressed by     AV  Y          ge          C04          Vaq  The second term  4  relative error  includes an estimate of the error of the CO     probe  the error for calculating the Henry constant  approx  1   and the  inaccuracy regarding the constancy of the partial pressure throughout the soil  sample  The last one can be adjusted by the user in the register  Special  Parameters     lt   Error of dissolved gases         9 1 12 3 Dissolved oxygen  The calculation is analogous to the calculation of dissolved CO   whereas the    estimated error is larger due to the less accuracy of the oxygen sensor     f      2  AO Maja 0 07f  Vag    2gel           d      As the solubility of CO  is much higher than of O  the calculation error is much  less crucial for dissolved O      9 1 13 Gas concentrations  For calculating the amount of O  the sensor reading  in vol96  must be    transformed into a concentration with the following error                    2 2  AKonz   Konz     pve PEL Al    Vol  p T 273 15  The errors in the concentration changes which are required for the conversion    rates are  Ill for CO  approx  2     Ill for     approx  4     9 1 14 Gas conversion rates                   2         k                 2     f       3  AdCO      Vhead ONZ  o   t           2        we     Konz  o  t js Konz    6    ACO  gel        O       2                    2    AdO                    20                              Total gas  pressure measurement             2    2 2        
76. orking with the BaPS system              Table of contents                                   sen 9  2                                                        1  3  Jlnitial Operation    etr rrt ce e e NEKOE ETETE raK SOENE 12  3 1  Connecting Sensors  eiie itt tre Rei RR REPRE PE            AE Pre kir          12  3 2  Find  the COM port    correre bet ees beds        12  3 3  Initial function test    eee ere ere verc neri inue Ee edens 14  3 4 Connecting a thermostat                      4       0                                           14  34    Cooling                eee res             14  3 4 2 External temperature                   22                             15  4  Hardware                      9                                  16  4 1 Incubation container    16                NE 17  4 2        measuring                                 0           18  4 2                                                                           19  4 2 1                              5                                                                                      19  4 2 1 2    Press  re Sensor    ie roti neas estre          20  4 2 1 3 Carbon dioxide sensor    eene nennen 20  4 2 1 4 Oxygen sensor  iua ee pret ir rin ERE rH E nenn 20  420105  Septic dieere te etie ertet Eois de eet neatis                   21  4 3  BaPS sensor interface                     4444244  0     1 20 tenter enne 22  4 3 1  Interface  LE 24  4 4                                                        
77. ours  recommended     Ill Mouse  necessary     98                   58 70072    12    Replacement parts    12 1 1 BaPS calibration service    Replacement parts and accessories    12 Replacement parts and accessories    To assure the perfect performance of the BaPS process analysis system the    sensors should be checked annually and  if necessary  be recalibrated  UMS offer    this as an complete service  Art  no  BaPS Kali      12 1 2 Replacement parts list    Article    CO  sensor    O  sensor  Pressure sensor    Quick lock coupling   female with  26 4mm  tube nipple    Reducing nipple for  septum    Silicone septum 3mm   diameter   2mm    Fork wrench 13 17  Fan   BaPS container bottom  BaPS sensor head  BaPS transportation lid  Syringe 10 ml    Spare needle for    Note    incl  screw in housing and  transducer    incl  transducer    for external temperature  regulation    VA stainless steel    20 pieces    for changing the septum    See accessories    incl  sensor installation    Art  no   BaPS CO2 3    BaPS O2 25  BaPS P 800 1200  BaPS SCH W    BaPS RED    BaPS SEP    BaPS GAB 13 17  BaPS LUF    BaPS SEN  BaPS TRA  BaPS SPR 10  BaPS SPR ERS    99                 vacuum tight syringe    Kaltger  testecker for supply of sensor interface BaPS KAL   RS 232 interface cable BaPS RS232  Thermo box BaPS THE   Spare O ring ring for 3 pieces BaPS SEN DICH    sensor head           100   737               Replacement parts and accessories           12 2 Accessories    12 2 1 Cooling 
78. pends      the measured gas INFO  changes and on the selected water content  Accordingly  thresholds and accuracy are interdependent  The accuracy  is improved when the dry weight is determined with  gravimetric methods after the measurement     6 5 2 1 Terminating values       Schwellenwerte  eine Bedingunge erf  llt  zwei Bedingungen erf  llt        A05   20Vo      E   0  1 5             Acos  15             Aco  0                                          10 0 hPa    AP 15 0 hPa             For automatic termination the continuously measured changes in the CO   O   content and pressure can be used  Then  the program will terminate the  procedure when  as selected  one or two adequate changes in one  two or three    of the parameters occur  The program will always ask before finally terminating  the procedure     The possible terminating conditions are either only one of the selected condition  is fulfilled  left column  or  at least two of the selected conditions are fulfilled  right  column   If two conditions have to be fulfilled  the limiting values should be    43              smaller  Tick      the parameter you wish to activate and select the limiting value     Not marked parameters a deactivated     The limiting values must have a sufficient latitude to reach the required accuracy     see chapter error calculation      FOP To achieve a sufficient accuracy  the limiting values should TIP  be as or be higher than the following        6 5 2 2 Accuracy ofthe rate calcula
79. per     Much more accurate is the use of an thermostat with an external circuit and an  active controller  see chapter Replacement parts and accessoriesaccessories   A  cooling duct for tempering the container is integrated in the base of the chamber   The tubes for the tempering fluid are connected to the plastic quick lock  couplings    Always temper with small gradients to allow an even temperature interchange  within the container to reduce the chance of condensation as soil moisture will  vaporise and condense on the inside of the measuring head     One of the PT100 temperature probe is used for the thermostat regulation  The  temperature output for connection to the thermostat is on the backside of the  interface     The thermostat should have the following specifications    Ill External tempering circuit          Connector for an external temperature  PT1000  4 wire measuring principle   Ill Pl or better PID controller   Ill Temperature range 0   50   C    With an active thermostat regulation the typical time to reach a temperature  stability of better than 0 2   C would be one to two hours  Not until the  temperature is stable the tightness test or measurements can be started     6 5 Measurement set up    Start the BaPS program by successively clicking  Start   Program   BaPS    BaPS   When the program is open  start a new measurement with  File   New  Measurement      37              Before starting    measurement some settings          to      entered         window
80. r   Fehlerprotokoll      Drucken    11  Division by Zero     EnPtnrTest     TestOnError_Click  60010          Speichern EMail          Befehl  wiederholen             Weiterer Programmablauf             Fortsetzen mit Prozedur Programm  n  chsten Befehl verlassen beenden          There are three possible ways to keep a record of any errors and for sending  them by email  You can either print out or save the protocol or send it directly to  UMS  Select your preference by clicking on one of the following options        Fehlerprotokoll           Drucken      Speichern   EMail                Software description    Please always send the complete protocol to UMS to make it easier for us to  trace the error  Also give us all information about the executed steps before the    error occurred        Weiterer Programmablauf       Befehl Fortsetzen mit Prozedur Programm   wiederholen n  chsten Befehl verlassen beenden          Then  there are four options on how to continue with the program     If you will retry the procedure the error probably will occur again  You might try  to continue by ignoring the error  In case of sequencing errors you should exit the  procedure  In case of serious errors abort the complete BaPS program     9 Please always send the error that occurred first         Subsequence errors after                  the earliest error     normally are not informative     In case of program errors please contact Mr  Thomas  Pertassek by e mail  tp Qums muc de  or telephon
81. ree  temperature sensors for monitoring and control are used  all are PT100 1000  types with accuracy class 1 3 DIN      variance  lt 0 1   at 0          Temperature is picked up in the soil as well as in the headspace  The  measurement will not start unless a certain temperature stability has been  achieved                  soil temperature probe is equipped with two independent temperature    sensors  One sensor can be used for external regulation  for example of an  thermostat  Use the 4        connector on the backside of the       5 sensor interface   see chapter  External temperature sensor    Clean the temperature probe with a  moist cloth     ANFO Besides the requirements of the microbiological process   NFO  the good thermal stability reduces temperature related  sensor inaccuracies and pressure changes     4 2 1 2 Pressure sensor    Inside the incubation container the absolute pressure is measured  The used  sensor is a stainless steel encapsulated  piezoresistive pressure transmitter with a  range of 800 to 1200 hPa  The sensor has an integrated amplifier and is  temperature compensated in the range of 0 to 50   C     The sensor is connected to the electronics with an individual plug connector     A recalibration should be performed at least every second year  see chapter 12  Replacement parts and accessories      4 2 1 3 Carbon dioxide sensor    The used CO  probe is a single beam infrared sensor for a range of 0 to 3 vol    percent by volume   IR CO  sensors util
82. rogeneous soils     Take the samples to the laboratory  preferably inside the BaPS container closed  with the accessory transportation lid  In the laboratory put on the measuring head   lid with incorporated sensor fittings  and connect the sensor interface  Now  the  soil samples a sealed pressure tight     Allow the samples to obtain the required temperature  It would be best to use a  thermostat with an external thermo cycle  When the system has reached  temperature stability start the reading with the supplied Windows Software     To make a measurement the software needs some specific data  For a quick and  easy to handle start up the software proposes pre set plausible values for all  required and important inputs     During a measurement the readings and the evaluated rates are displayed online   This will allow the user to assess the accuracy and reliability of a running  measurement  For a sufficient accuracy  the sensors require a minimum alteration  rate  Extending the measuring time will increase the accuracy     When the required accuracy is reached  the measurement is stopped either  manually or automatically       an automated procedure the system continuously  controls the default minimum alteration rates and pre set accuracies     The evaluation of the readings is performed automatically  The results can be  printed or exported to other Windows applications     Find the detailed description of the measuring cycle in the chapter    Taking BaPS   readings      v
83. s well known that the Nitrate flows beneath farm lands caused by the use of  fertilizers are the major source for the Nitrate contamination of the groundwater  and  as a consequence  of our drinking water system  Despite the problematic  measuring techniques the determination of quantity and flow of substances   mainly Nitrate  is the key for short term decisions on how and when to use    fertilizers and irrigation     The system developed and patented by the Fraunhofer Institute for  Atmospherically Environmental Research           ING 1999  offers a simple and  reliable process for the determination of gross conversion rates  Now  a  verification and monitoring of nitrogen conversion in soils is possible  As the  results are offered rather quick  within 5 to 12 hours  for example fertilising  schedules for the same day can be set up     This will help to optimize the use of Nitrogen fertilizer and protect the  groundwater  Learning more about the nitrogen conversion rates increases the  knowledge for the microbiological courses in soils and makes this system very  suitable for scientific research in this field as well        Measuring cycle    The BaPS measuring cycle will start in the field with taking soil samples  By using  standard soil sampling rings the samples will be disturbed the least  In one       5  unit 7 samples are analysed simultaneously  Get a typical selection of samples to  receive results which are as close as possible to the realistic processes in  hete
84. s working  To do  so  open the lid and switch on the  BaPS electronics  The fan should  start now  the 24 pin plug must be  connected     Check if the interface cable is  connected properly    check if the electronic is supplied  with power    Check the setting of the COM   Port    Check ifthe COM port is  occupied by another program   Check the sensor cable  connection    Had the sensor been connected to  the BaPS electronic before  switching on  If not  switch off the  electronic and on again    Check if the selected configuration  settings are reasonable   temperature stability     Check the function of the  thermostat    Check if the mains cable is  connected    Check the fuse    Check the sensors  power supply   Check if the calibration  specifications are correct     93                   Technical specifications    11 1 Electronics    Analogue inputs  Digital   O Ports   A D transformation  Accuracy   Interface   Cable length   Mains power supply  Fuse   Current consumption  Enclosure    Width   Height   depth   Protective rate  Working temperature    Storage temperature    8  differential  0   2 5 VDC  8  TTL   24 bit   0 05 96   RS232   2m   115 230 VAC     A  quick acting fuse  max  500 mA    255 mm  160 mm  260 mm   IP 20   5    35        20     70               11 2 Hardware   Technical specifications   Connector CO2 sensor  Connector pressure sensor  Connector septum    Connector cooling fluid    Sampling rings size   Height   Diameter   Volume   Housing     Diame
85. somole ring is placed in a cutting  shoe  The ring is clamped inside the  cutting shoe and no water or sol can  he fing from     op side   s of this ring holder are                   The sample is oversized on both  sides    71 No risk of losing a sample    a      sample ring is in a protected              inside ultina shoe    here is no risk of losing or  damaging the ring    Hammering head with  guide cylinder    The hammering head with guide  cylinder Is used for filing soll sample  rings In hard soil layers both on the  surface and in profile pits  The   ple ring is clamped to the hamme   fing head by means of    retaining  ring  The guide cylinder ensures  that the sample is taken In a true  straight line  The soll sample ring  can simply be dug out or extruded  using      bent spatula                    c       Soil Sampling Set       No  BPK 250       60x 56 mm  h 40 5mm  volume 100      bpe 07 60 5C       53 x 50 mm  h 51 mm  volume 100      bpe 07 53 5C    Dipl  Ing  Axel Rescher  Tel    49  0  89  12 66 52   13 Fax   20  eMail  ar ums muc de    UMS GmbH    D 81379 M  nchen   Gmunder Stra  e 37                                  Replacement parts and accessories    12 2 4 Further accessories    Article Note Art  No     Filler cylinder for BaPS BLI 3  sampling rings    Sampling rings on request    Protective caps for on request  sampling rings    System training at your BaPS SYS  laboratory    105                13 Literature index     ALEI99YI  Alef      1991   Method
86. sponse time    10 min          The cable length between oxygen sensor        amplifier        inside the BaPS may never be changed  e    11 6 Pressure    Technical specifications              Measuring range 800     1200 hPa  Accuracy 0 1 96  Long term stability 0 5 96 a       Measuring principle    Piezoresistive pressure transducer       Temperatu re range    0    50                  Housing   Diameter ca  35 mm  Length       105 mm  Material Stainless steel  Response time 55  Calibration interval   year       Der Messverst  rker ist in den Druckmesskopf integriert     97              11 7 Temperature           temperature measurement two     1000 and        PTIOO with the accuracy  class 1 3 DIN B are used   One sensor measures the headspace temperature  It is attached to the fan to have  the most accurate result   The two other sensors are integrated in an stainless steel tip and are pushed into  the soil  The first is used by the BaPS  the second controls the external    thermostat     Technical specifications     Measuring range  30     70        Accuracy 0 1       0      Measuring principle Change of resistance of platinum  Housing   Material Stainless steel   Diameter 5 mm   Length 40 mm   Protective rate IP 68   Response time T 90 30s    11 8 System requirements   Ill Pentium 166 or higher  recommended    18 MB RAM memory  recommended          10 MB free space on hard disk  necessary    Ill Free RS232 interface  necessary    Ill Graphic display  800 x 600  65 536 col
87. st reading is always invalid     6 6 2 Automatic measurements    To test if the temperature stability is sufficient  10 readings are taken minutely at  first  These are not displayed  This means the next reading is displayed after 10  minutes     During the measurement the readings are displayed graphical and tabulated  This  readings are not the real sensor values but the temperature compensated values   From the pressure the water vapour is withdrawn  The gases dissolved in the soil  are considered as well     Thus  the factual evaluation of the conversion rates is possible even if for example    the temperature is not constant     Graphical presentation    51                         Messung   BaPS Beispiell   dat    Ach were           User              berechnete            Table        20 00   19 00   8 18 00   17 00     18 00   asore                     600 1800 2100 Tueis    Berchnung der Deniifkation  Zeit O2 gel  st in Bodenwasse   Lomoll 25002  2 Fehler                     327 Fehler  Volumen  ACO ni    Ex H Fener                  23 Fehler    Temperaturschwankung    2721 12 Fehler                         Headipace Boden     EEE  Gesamt asl mal CER 2 Fehler  Headspace K   e Den Bildungsise                    N Veirdungen          23920  T  Fehler  2                     Denitfikatenstate  ug N  kg BTG h  57833  13  Fehler             Biserwasserbeslinmung                                           3 Berechnung der Badenatmung   Wassergehalt    fan Ver  H  Fehler CO2Bil
88. ter    Height with sensor head   sensors  Height with transportation lid  Material   Weight without sampling rings   with sensor head   with transportation lid    Protective rate    Technical specifications         11      1 4      1 4   Quick lock coupling  for tubes with  6 4 mm inside diameter   Standard   40 5 mm           56 mm          60        100 ml    approx  234 mm  without tube  couplings    ca  280 mm  97 mm    Aluminium  anodized    approx  6 5 kg  approx  5 0 kg  IP 68 with closed transportation lid    IP 66 with closed sensor head    95              11 3 Sensor technology    11 4 Carbon dioxide    The used CO  sensor is an infra red absorption type  working with the single     beam method  The electronics which transfers the signal through the cable to the  BaPS is integrated in the sensor head     Technical specifications                                Measuring range 0    3 vol96  Accuracy 2 96  Measuring principle IR absorption  Long term stability 396 a  Temperature range 0    40       Housing  Material Stainless steel  Diameter 22 mm  Length 100 mm  Connection 8 pol  plug  Thread PG 11  Response time 2 min  Calibration interval   year   11 5 Oxygen    Technical specifications        Measuring range vol  0    25       96          m    Technical specifications       Accuracy    1                                                  zirconium oxide   current limiting       Temperature range    0    50            Housing    Integrated in BaPS sensor head       Re
89. thermostat             DC50       0    Haake Refrigerated Circulator    This refrigerated circulator is equipped with a bath opening for direct temperature controlling samples  The built in CFC free  cooling circuit enables efficient heat removal  This unit is often used to replace expensive tap water cooling     Features     X Robust design using high grade stainless steel and  temperature resistant polymer with sealed bath cover   X Removable fan grid allows easy cleaning   X Bath is equipped with handles and drain opening   X 2 speed power pump to reduce turbulences in open  baths  wear free   X Integrated overload protection   X User resettable  adjustable overtemperature cut out  and low liquid level protection   X  Easy to operate by only 4 navigation keys   X Electronic PID control using a highly sensitive Pt 1000  sensor for excellent temperature accuracy   X RS 232C interface as standard   X User defined fixed temperatures with separate          for each temperature   X Display resolution selectable between 0 1 and 0 01         X Limitation of the usable temperature range by high and  low temperature setting   X RTA   Real Temperature Adjustment   X User adjustable correction factor to meet ISO 9004   X Alarm indication by FIS   Fault Identification System   X The reason for any malfunction is clearly displayed   X Built in ETC  External Temperature Control  with a  connection for an external Pt  00 sensor                     8   8   5   i Technical Specifications   
90. tion       Fehler bei der Ratenberechnung  Nitrifikation  keine X    Denitrifikation  keine v    Bodenatmung  keine v                In addition to the terminating conditions the procedure could be terminated as  soon as a sufficient accuracy in the rate calculation is achieved  see chapter error  calculation   The measurement will be terminated if one of the conditions are  fulfilled as selected  The achievable accuracy depending on your system and the  type of soil should be known to select reasonable values     The accuracy are entered as percentage  96  of the calculated rates        For calculating the accuracies  all entered error settings 9            assessed  Always             plausibility check of the           44       BaPS measurements    settings before a measurement     6 5 3 Information register       Konfiguration   Beenden der Messung Information   Spezielle Parameter      Datum Analyse   20 1 0 2000  Datum Probennahme     3 10 2000  Bodentyp  Braunerde    Ort der Probennahme      7 50                         Sehr trocken bei Probenahme            bei Probenahme 23   C          45           In the Information register you can enter details and specifications regarding the    measurement  These are stored with the measurement file and can be recalled    later     The top input fields should be filled out  The comments field is to save any further    information     6 5 4 The Special Parameter register                     Konfiguration   BaPS       Konfigurati
91. ur computer should only have  one 25 pin RS232 interface plug an adapter is needed which is supplied by  computer stores or could be ordered at UMS     The BaPS interface unit may only be used in dry surroundings  Keep it away from  any source of heat and do not expose the unit to direct sunlight during operation   Besides possible damage heating up will cause inaccuracies of the electronics     4 3 1 Interface    The communication of BaPS software and BaPS interface is performed through a  serial RS232 interface  Thus  the system is connectable to any IBM compatible  computer     Use the supplied data cable  Null modem cable   which can be connected in both  directions            Please observe that the appropriate COM port must be TOP  selected in the software  normally COM  or       2  refer  to chapter 3 2 Find the COM port      4 4 Syringe   With the syringe  a defined volume can be withdrawn from the headspace  This  allows you to determine the headspace volume by measuring the pressure  change  The headspace volume is required for the calculation of the conversion  rates  Always used the calibrated syringe to achieve the lowest possible  divergence from the specified volume  tolerance 196      Please use a proper hollow needle to prevent a destruction of the septum   Luer   Lock  connector  stainless steel  outer diameter 0 5 mm  length minimum 20 mm           Hardware description    Also  the syringe is needed at the end of each measurement  In general the  process wi
92. used to take samples in  virtually all soils  The samples can  be taken on the surface       auger  holes or in proflle pits  above as  well as under the groundwater  level         closed ring holder in this   set is fitted with a conical threaded  connection which means that the  ring holder may also be hammered  into the soll with an impact absor  bing hammer       The set  among other items   contains     closed ring holder  a  handle with beating head  an  Edelman  ond    Riverside auger   extension rods     hammering head  with    guide cylinder  an aluminium  cose with soil sar rings and   ious accessories                    The samples sets with the postfix SC  con be obtained for soll samp   tings with a diameter of 53  60 and  84 mm  The most commonly ap   pled  standard  diameter is 53                    Soil sample rings  Soll sample rings are stainless steel  tings made of seam  uber    Y inside and out  The t  ing has a cutting  dimensions  and thus the volume  ntent  of soil sample rings  actly known  which makes them  highly sultabble for laboratory studi  With soll sample rings undisturbed  samples are taken    Hom        The                These are then used for  for example  7 The moisture content at various  moisture tensions  from which a  pF curve can be made   The water permeability   The air permeability   The weight by volume    The density   The sol water air relationship   at field capacity   The pore distribution    The oxygen diffusion            
93. uts  In four steps screw down the nuts    steadily and crosswise so the lid has a form fit seat on the container  Fasten the  nuts only hand tight and do not apply force  This will assure a good thermal  conduction between housing and lid  Also  internal or external pressure changes  will not cause a change of the volume inside the container by compression of the  O ring     6 3 3 Electronic connections    Connect the measuring head and the sensor interface with the three cables   There are three different plug sizes to prevent an accidental false polarity     Please observe that the plug connections are only watertight  IP66  if they are  completely screwed together  The 24 pin plug will even have IP68        Please always connect the       sensor first before        switching on the interface so the sensor is initialized          the electronics  If the sensor is connected afterwards  the  maximum reading of 3 vol  is displayed  as without an  sensor  and no measurements are possible   6 4 Tempering the system     To prevent condensation      the sensors      self heating v     the measuring head must always be turned on before          36    BaPS measurements    starting the tempering of the container  The fan will  circulate the air in the headspace to accelerate the  temperature stableness     If you should not have a thermostat with external cooling  the closed container  might be submerge into a water bath down to the starting of the 24 pin plug  connector  but not dee
94. wn to 0 03          This parameter is very significant  as the other readings are compensated to the  temperature  For example  a temperature change of   K will cause a pressure  change of 3 6 hPa inside the system  Therefore  the accuracy of the temperature  is crucial for the accuracy of the complete system     An inappropriate temperature stability in the system will cause variable  temperature gradients  Thus  a good temperature stability is essential     9 1 7 4 Oxygen    Typically decreases of 1   2 vol96 at approx  20 vol96 are measured     84     nn                              accuracy over 10 hours is approx  0 03 vol   the stability over 3  years approx  1  of the measuring range       gt  the relative accuracy during a measurement is approx  2      9 1 7 5 Carbon dioxide  A change of typ    vol  is measured in the range of 0   2 vol    The used sensor is a infra red absorption probe     The attainable accuracy over 10 hours is approx   0 02 vol96  the long term  stability over 2 years approx  396 of the measuring range     9 1 8 Further error sources    Errors during the time measurement are neglectable small as time enters the rate  calculation only linear     9 1 8 1 Measuring technique    I  During the determination of the headspace there is the error of the  withdrawn volume  With precision syringes the error can be kept below 196     2  Temperature changes affect the pressure measurement  total gas amount   A  temperature change of 0 1    causes a pressure ch
    
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