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1. 2 9 Serial ATA Connections Serial ATA SATA Ports There are six Serial ATA Ports I SATAO I SATA 5 located on the motherboard including two SATA3 ports I SATAO 1 and four SATA2 ports I SATA2 5 Please note that there are only four SATA2 ports located on the X9DRi LN4F These ports provide serial link signal connections which are faster than the connections of Parallel ATA See the table on the right for pin definitions SCU Ports Eight Storage Control Unit SCU Ports SCU 0 3 4 7 are located on the X9DR3 LN4F and four SCU ports SCU 0 3 are on the X9DRi LN4F to provide serial link connections These ports are supported by the Intel PCH chip See the table on the right for pin definitions Chapter 2 Installation SATA SCU Pin Definitions Pin Definition 1 o O gt CQ NM Ground TX P TX N Ground RX N RX P Ground Note For more information on SATA HostRAID configuration please refer tothe Intel SATA HostRAID User s Guide posted on our Website http www supermicro com Gi LAN OLANIN USB23 USBOT ur Q gp Ub we EE m E 5 H de in TPMLLAN m n e 3 g amp 2 i3 1
2. me HIHIN SUPERO X9DR3 LN4F X9DRi LN4F Motherboard User s Manual Universal Serial Bus USB Backplane USB FP USB 4 5 6 7 USB 0 1 2 3 Pin Definitions Four Universal Serial Bus ports Pin Definitions Tom TEE USB 0 1 USB 2 3 are located on Pin Definition Pin Definition Pin Definition the I O back panel In addition two 4 45V 00095 t ss USB headers located close to thel 2 PO 2 PO 2 PO Intel PCH chip provides four front 3 PO 2 POr S om accessible USB connections USB 4 Ground 4 Ground 2 Ground 4 5 USB 6 7 One Type A connec 5 wa 6 NC 5 key NC No connection tor USB9 also support front panel USB connections Cables are not included See the tables on the right for pin definitions 1 Backpanel USB 0 BP USB 1 2 3 BP USB 2 4 BP USB 3 5 6 7 FP USB 4 5 FP USB 6 7 FP USB 9 S rer ORTAMDAN LAE E JE N eel eelilti 2 16 Ethernet Ports Four Gigabit Ethernet ports LAN1 3 LAN2 4 are located on the I O back pl
3. T SGPIO 1 2 Headers Two SGPIO Serial Link General Purpose Input Output headers are lo cated at J17 J18 on the motherboard These headers support Serial_Link interface for onboard SATA connec tions See the table on the right for Chapter 2 Installation T SGPIO Pin Definitions Pin Definition i NC 3 Ground 5 Load f Clock Pin 2 6 5 8 Definition NC Data Ground NC pin definitions Note NC No Connection DOM PWR Pin Definitions DOM Power Connector A power connector for SATA DOM Disk On Module devices is located Pin Definition 1 5V at JSD1 Connect an appropriate 2 Ground cable here to provide power support 5 RU for your DOM devices A T SGPIO1 B T SGPIO2 C DOM PWR uss usen ET ong wg wi n Ror Sos 205 ina SKRUESU HOS IT H TONG Za TORO EA ronwa za amp b E UPER X9DR3 LN4F X9DRI LN4F Rev 1 10 d I I SUPER X9DR3 LN4F X9DRi LN4F Motherboard User s Manual IPMB IPMB H
4. Bac siSazies ineo MELEN EE A TPM Port 80 Header SUPER X9DR3 LN4F X9DRI LN4F Rey 1 10 Tem LT vena ia SUPERO X9DR3 LN4F X9DRi LN4F Motherboard User s Manual Power SMB PC Connector PWR SMB Pin Definitions Power System Management Bus I C Connector JPI2C1 monitors power Pin Definition 1 Clock supply fan and system temperatures gt 5 t See the table on the right for pin definitions 3 PWR Fall 4 Ground 5 3 3V Overheat Fan Fail LED OH Fan Fail LED The JOH1 header is used to connect Status an LED indicator to provide warnings State Message of chassis overheating and fan failure Solid Overheat This LED will blink when a fan failure Blinking Fan Fail occurs Refer to the tables on right for pin definitions T noe aa usezo usan Eon A TET TEELE LI T TENNO N EI
5. enne 2 34 Onboard Power LED semen ana pde toot eire eem aee RR ani dengi 2 35 azimalpdB zio 2 35 BMC Heartbeat LED rm re enn rre ya npo voe Ar Ne Pana 2 36 2 9 Serial ATA Connections eerte esee cet pe k e d nete da 2 37 Serial ATA SATA Por s A MAM m m m m eeen 2 37 SGU obe M 2 37 Chapter 3 Troubleshooting 3 1 Troubleshooting Procedures roi eerte kiere OE alkan ib 3 1 Before Power Qn uicta pee cnt pp ey Pee pae eoe 3 1 pe 0 GR MA ARE AK N ot Md sede pe o Mo 3 1 SUPER X9DR3 LN4F X9DRi LN4F Motherboard User s Manual NO VIGGO aker sr eda a sayay m gi yana aaa enayi sedan g ral 3 2 System Boot Faire iicet EE etae bela li kane 3 2 Losing the System s Setup Configuration 3 2 Memo EIN ONS esate ener ee sem E gaya daa solea a a a ED 3 3 WhentheSysteemBecomesUnstable i 3 3 3 2 Technical Support Procedures nte anlamayan l ak 3 5 3 3 Battery Removalandinstallation Amm 3 6 Battery Removal sisin sia neret erae re sena tope ee apsanicnsdeueausnassien panama bila seed 3 6 Proper Battery Disposal tone cete tete bt mire den 3 6 Battery Installatiori 2 toi iere alg ai 3 6 3 4 Frequently Asked Questions aradan al needs 3 7 3 5 RetumingMerchandiseforSerice 3 8 Chapter 4 BIOS 4 1 MtFO U L OM E 4 1 Starting B
6. Blue Unit Identified is used in conjunction with the rear UID switch to provide easy identification of a system that might be in need of service Refer to UID Switch on Page 2 17 for more information TL a aa umi umen TET A PWR LED fe B Rear UID LED wa Nv CE EDE TEZEJ CEE Por roa 205 inao SUPER XIDR3 LN4F HXIDR LN4F Rev 1 10 EI Em SUPER X9DR3 LN4F X9DRi LN4F Motherboard User s Manual BMC Heartbeat LED BMC Heartbeat LED ABMC Heartbeat LED is located at LEM1 on the motherboard When LEM1 is blink Green BMC Normal ing BMC functions normally See the Blinking Color State Definition table at right for more information A BMC Heartbeat VGA LAN is USB23 USB Tol t ee EE 9 LED d s m m t EFE 3 ronwa zd amp SUPER X9DR3 LN4F X9DRI LN4F Rev 1 10 il We sog
7. SUPER X9DR3 LN4F XODRi LN4F Rev 1 10 ATX Power 24 pin Connector Pin Definitions Pin Definition Pin Definition 13 3 3V 1 3 3V 14 12V 2 3 3V 15 COM 3 COM 16 PS_ON 4 5V 17 COM 5 COM 18 COM 6 5V 19 COM 7 COM 20 Res NC 8 PWR_OK 21 5V 9 5VSB 22 5V 10 12V 23 5V 11 12V 24 COM 12 3 3V 12V 8 pin PWR Con nector Pin Definitions Pins Definition 1 through 4 Ground 5 through 8 12V Required A JPW1 24 pin ATX PWR Req d B JPW2 8 pin Processor PWR Req d C JPW3 8 pin Processor PWR Req d Chapter 2 Installation Fan Headers Fan Header Pin Definitions This motherboard has eight system CPU fan headers Fan 1 Fan 6 Fan A Fan Pin Definition P 1 Ground B on the motherboard All these 4 pin P et F fans headers are backward compatible 3 Tach with the traditional 3 pin fans However ee r i 4 Firmware Thermal fan speed control is available for 4 pin Management fans only The fan speeds are controlled by Firmware Thermal Management via IPMI 2 0 See the table on the right for pin definitions Chassis Intrusion Chassis Intrusion A Chassis Intrusion header is located Pin Definitions at JL1 on t
8. E TE 4 Link b d D y LED Rear View when facing rear side of the chassis the LED Settings GLAN Activity Indicator Left Color Status Definition Yellow Flashing Acti ve GLAN Link Indicator LED Settings LED Color Definition Off No Connection or 10 Mbps Green 100 Mbps Amber 1 Gbps IPMI LAN Link LED E Activity LED IPMI LAN Link LED Left amp Activity LED Right Color State Definition Link Left Green Solid 100 Mbps Activity Right Amber Blinking Active A LAN1 2 LEDs LAN LEDs B IPMI a 1 Chapter 2 Installation Onboard Power LED Onboard PWR LED Indicator LE1 LED Settings An Onboard Power LED is located at LET TED Goon SENE on the motherboard When this LED is on off the system is on Be sure to turn off the System Off PWR cable not connected system and unplug the power cord before Green System On installi t S Green ACPI S1 State removing or installing components See Flashing the tables at right for more information Quicky Rear UID LED UID LED Status The rear UID LED is located at LE2 on the rear of the motherboard This LED Color State Status
9. ES SUPER X9DR3 LN4F X9DRi LN4F Rev 1 10 ES e gn A I SATAO B I SATA1 I SATAO 1 X9DR3 LN4F Only C I SATA2 D I SATA3 E I SATA4 F I SATAS G SCU 0 3 H SCU 4 7 SCU4 7 X9DR3 LN4F Only SUPER X9DR3 LN4F X9DRi LN4F Motherboard User s Manual Notes 2 38 Chapter 3 Troubleshooting Chapter 3 Troubleshooting 3 1 Troubleshooting Procedures Use the following procedures to troubleshoot your system If you have followed all of the procedures below and still need assistance refer to the Technical Support Procedures and or Returning Merchandise for Service section s in this chapter Warning Always disconnect the power cord before adding changing or installing any hardware components Before Power On 1 Make sure that there are no short circuits between the motherboard and chassis 2 Disconnect all ribbon wire cables from the motherboard including keyboard and mouse cables 3 Remove all add on cards 4 Install CPU 1 first making sure it is fully seated and connect the front panel connectors to the motherboard No Power 1 Make sure that they are no short circuits between the motherboard and the chassis 2 Make sure that the ATX power conn
10. System Block Diagram Notes 1 This is a general block diagram and may not exactly represent the features on your motherboard See the Motherboard Features pages for the actual specifications of each motherboard 2 This block diagram is intended for your reference only Chapter 1 Overview 1 2 Processor and Chipset Overview Built upon the functionality and the capability of the Intel E5 2600 Series Socket R processor and the C606 C602 chipset the X9DR3 LN4F X9DRi LN4F moth erboard provides the performance and feature sets required for dual_processor based HPC Cluster Database servers With support of Intel QuickPath interconnect QPI Technology the XY9DR3 LN4F X9DRi LNAF offers point to point serial interconnect interface with a transfer speed of up to 8 0 GT s providing superb system performance The C606 C602 chipset provides extensive IO support including the following functions and capabilities PCI Express Rev 2 0 support PCI Express Gen 3 uplink supported by some SKUs e ACPI Power Management Logic Support Rev 3 0b or Rev 4 0 USB host interface backplane and front access support e Intel Rapid Storage Technology supported e Intel Virtualization Technology for Directed I O Intel VT d supported Intel Trusted Execution Technology supported Serial Peripheral Interface SPI Supported Digital Media Interface DMI supported Advanced Host Controller Interface AHCI supported
11. CPU C3 Report Available when Power Technology is set to Custom Select Enabled to allow the BIOS to report the CPU C3 State ACPI C2 to the operating system During the CPU C3 State the CPU clock generator is turned off The options are Enabled and Disabled CPU C6 Report Available when Power Technology is set to Custom Select Enabled to allow the BIOS to report the CPU C6 State ACPI C3 to the operating system During the CPU C6 State the power to all cache is turned off The options are Enabled and Disabled CPU C7 Report Available when Power Technology is set to Custom Select Enabled to allow the BIOS to report the CPU C7 State ACPI C3 to the operating system CPU C7 State is a processor specific low C State The options are Enabled and Disabled Package C State limit Available when Power Technology is set to Custom This feature allows the user to set the limit on the C State package register The options are CO C2 C6 and No Limit Factory Long Duration Power Limit This item displays the power limit set by the manufacturer during which long duration power is maintained Long Duration Power Limit This item displays the power limit set by the manufacturer during which long duration power is maintained Factory Long Duration Maintained Available when Power Technology is set to Custom This item displays the period of time set by the manufacturer during which long duration power is maintained Long Dura
12. Con In USB or PS 2 keyboard PCI or Serial Console Redirection IPMI KVM or SOL Con Out Video Controller PCI or Serial Console Redirection IPMI SOL System Overheat A 1 SUPER X9DR3 LN4F X9DRi LN4F Motherboard User s Manual Notes A 2 Appendix B Software Installation Instructions Appendix B Software Installation Instructions B 1 Installing Software Programs After you ve installed the operating system a screen as shown below will appear You are ready to install software programs and drivers that have not yet been in stalled To install these programs click the icons to the right of these items Note To install the Windows OS please refer to the instructions posted on our Website at http www supermicro com support manuals S SUPERMICRO X9DRi LN4 X9DR3 LN4 Motherboard Drivers amp Tools WinXP xi Intel Chipset INF files SUPERMICR Matrox G200e Graphics Driver Drivers a Togs Microsoft Net Framework Optional Intel C600 Chipset X9DRi LN4 Ra v X9DR3 LN4 legal torage Manager Intel Rapid Storage Technology Enterprise Intel PRO Network Connections Drivers Trusted Platform Module Driver Optional SUPERMICRO SuperDoctor III SUPERMICRO Computer Inc B B B L e Browse CD T Auto Start Up Next Time Build driver diskettes and manuals For more information please visit SUPERMICRO s web sie Driver Tool Installation Display Screen f Note 1 Cl
13. PROCAULIONS RH 2 1 Unpacking 2 1 2 2 ProcessorandHeatsinkinstallation 2 2 Installing the GA2011 PrOCOSSOL iicet terreno 2 2 Installing Passive CPU Heatsink necne 2 6 Removing the H atsink cecinere elle enine 2 7 2 3 InstalingandRemovingtheMemoryModules 2 8 Installing amp Removing DIMMs Removing Memory Mod les 3 tet nl Alama all 2 4 Motherboard Installati n 5 mo eed e e C zan eroi Tz le CG KM Location of Mounting Oles eicere cootra y re aka mai aaa Br ne Installing the Motherboard 2 2 ecce ikeli ii 2 5 Control Panel Connectors and I O Ports Back Panel Connectors and I O Ports Back Panel I O Port Locations and Definitions 2 14 Serial Ports riti me bere eth te oc esi dedos ted iav ure ede 2 15 Video Conrecloti oan tee EE ER ee 2 15 Universal Serial Bus USB ecco epe pur un Pop eoi otto pq egre amda a 2 16 Ethernet Ports Unit Identifier SWIECh ioci t oec ae e ere Pee CREER ERR ely 2 18 Front Control e obtenta tret cepe et Pet dtd 2 19 Front Control Panel PinDefinitions 2 20 bius ENSE 2 20 Table of Contents Power BED 68 dct n tree Da vio irr t EU CERE 2 20 HDD aio P diem hala dll sn ella kea Ka gal 2 21 NIGI NICZ LED Indicators teo reto ottenere Ra 2 21 Overheat OH Fan Fail PW
14. terminal emulator designed for the Windows OS The options are VT100 Linux XTERMR6 SCO ESCN and VT400 Serial Port for Out of Band Management Windows Emergency Management Services EMS The submenu allows the user to configure Console Redirection settings to sup port Out of Band Serial Port management Out of Band Management Port The feature selects a serial port used by the Microsoft Windows Emergency Management Services EMS to communicate with a remote server 4 19 SUPERO X9DR3 LN4F X9DRi LN4F Motherboard User s Manual gt ACPI Setting Use this feature to configure Advanced Configuration and Power Interface ACPI power management settings for your system ACPI Sleep State Use this feature to select the ACPI State when the system is in sleep mode Select S1 CPU Stop Clock to erase all CPU caches and stop executing instructions Power to the CPU s and RAM is maintained but RAM is refreshed Select Suspend to use power reduced mode Power will only be supplied to limited components such as RAMs to maintain the most critical functions of the system The options are S1 CPU Stop Clock Suspend and Disabled NUMA NON Uniform Memory Access This feature enables the Non Uniform Memory Access ACPI support The options are Enabled and Disabled RTID Record Types IDs This feature displays the total number of Record Type IDs for local and remote pools The options are Optimal and Alternate High Precision
15. 4 Chapter 3 Troubleshooting 3 2 Technical Support Procedures Before contacting Technical Support please take the following steps Also please note that as a motherboard manufacturer Supermicro also sells motherboards through its channels so it is best to first check with your distributor or reseller for troubleshooting services They should know of any possible problem s with the specific system configuration that was sold to you 1 Please go through the Troubleshooting Procedures and Frequently Asked Question FAQ sections in this chapter or see the FAQs on our website http www supermicro com before contacting Technical Support BIOS upgrades can be downloaded from our website http www supermicro com If you still cannot resolve the problem include the following information when contacting Supermicro for technical support Motherboard model and PCB revision number BIOS release date version This can be seen on the initial display when your System first boots up System configuration An example of a Technical Support form is on our website at http www supermicro com Distributors For immediate assistance please have your account number ready when placing a call to our technical support department We can be reached by e mail at support supermicro com 3 5 SUPER X9DR3 LN4F X9DRi LN4F Motherboard User s Manual 3 3 Battery Removal and Installation Battery Remo
16. 800 1333 1333 1333 1333 1066 1600 1600 DRx4 4GB 8GB 16GB 1066 1066 1066 1066 NA 800 1333 1333 1333 1 1333 1066 1600 1600 QRx4 8GB 16GB 32GB 800 1066 800 800 NA NA QRx8 4GB 8GB 16GB 800 1066 800 800 NA NA Note For detailed information on memory support and updates please refer to the SMC Recommended Memory List posted on our website at http www supermicro com support resources mem cfm 2 10 Chapter 2 Installation Populating LRDIMM ECC Memory Modules Intel E5 2600 Series Processor LRDIMM Memory Support Table Ranks Per Memory Capacity Speed MT s and Voltage Validated by Slot per DIMM amp Data Per DIMM Channel SPC and DIMM Per Channel DPC Width 3 Slots Per Channel See the Note 1DPC and 2DPC 3DPC Below 1 35V 1 5V 1 35V 1 5V QRx4 DDP 16GB 32GB 1066 1066 1066 1066 1333 QRx8 P 8GB 16GB 1066 1066 1066 1066 1333 Note For detailed information on memory support and updates please refer to the SMC Recom mended Memory List posted on our website at http www supermicro com support resources mem cfm Other Important Notes and Restrictions e For the memory modules to work properly please install DIMM modules of the same type same speed and same operating frequency on the motherboard Mixing of RDIMMs UDIMMs or LRDIMMs is not allowed Do not install both ECC and Non ECC memory modules on the same motherboard Using DDR3 DIMMs with differ
17. DIMMA1 3 P1 P2 DIMMB1 3 P1 P2 DIMMC1 3 P1 P2 DIMMD1 3 The status of the memory modules specified above will be displayed as detected by the BIOS Memory Mode When Independent is selected all DIMMs are available to the operating system When Mirroring is selected the motherboard maintains two identical copies of all data in memory for data backup When Lockstep is selected the motherboard uses two areas of memory to run the same set of operations in parallel The options are Independent Mirroring and Lockstep DRAM RAPL Mode RAPL Running Average Power Limit provides mechanisms to enforce power consumption limits on supported processors The options are DRAM RAPL MODEO DRAM RAPL MODE and Disabled 4 11 SUPERO X9DR3 LN4F X9DRi LN4F Motherboard User s Manual DDR Speed Use this feature to force a DDR3 memory module to run at a frequency other than what is specified in the specification The options are Auto Force DDR3 800 Force DDR3 1066 Force DDR3 1333 Force DDR3 1600 and Force SPD Channel Interleaving This feature selects from the different channel interleaving methods The options are Auto 1 Way 2 Way 3 Way and 4 Way Rank Interleaving This feature allows the user to select a rank memory interleaving method The options are Auto 1 Way 2 Way 4 Way and 8 Way Patrol Scrub Patrol Scrubbing is a process that allows the CPU to correct correctable memory errors detected on a memory module and s
18. Event Timer Select Enabled to activate the High Precision Event Timer HPET that produces periodic interrupts at a much higher frequency than a Real time Clock RTC does in synchronizing multimedia streams providing smooth playback reducing the de pendency on other timestamp calculation devices such as an x86 RDTSC Instruc tion embedded in the CPU The High Performance Event Timer is used to replace the 8254 Programmable Interval Timer The options are Enabled and Disabled gt Trusted Computing Available when a TPM device is detected by the BIOS Configuration TPM Support Select Enabled on this item and enable the TPM jumper on the motherboard to enable TPM support to improve data integrity and network security The options are Enabled and Disabled TPM State Select Enabled to enable TPM security settings to improve data integrity and network security The options are Disabled and Enabled 4 20 Chapter 4 AMI BIOS Pending Operation This item displays the status of a pending operation Current Status Information This item displays the information regarding the current TPM status TPM Enable Status This item displays the status of TPM Support to indicate if TPM is currently enabled or disabled TPM Active Status This item displays the status of TPM Support to indicate if TPM is currently ac tive or deactivated TPM Owner Status This item displays the status of TPM Ownership gt Intel TXT LT SX Co
19. N please do not use a force greater than 8 Ib inch on each mounting screw during motherboard installation 2 Some components are very close to the mounting holes Please take precautionary measures to prevent damage to these components when installing the motherboard to the chassis 2 12 Chapter 2 Installation Installing the Motherboard 1 Install the I O shield into the chassis 2 Locate the mounting holes on the motherboard 3 Locate the matching mounting holes on the chassis Align the mounting holes on the motherboard against the mounting holes on the chassis 4 Install standoffs in the chassis as needed AL 5 Install the motherboard into the chassis carefully to avoid damaging mother board components Chassis ES 6 Using the Phillips screwdriver insert a Pan head 6 screw into a mounting hole on the motherboard and its matching mounting hole on the chassis C Motherboarc Qe Ls gt Motherboard 1 U Chassis 7 Repeat Step 5 to insert 6 screws into all mounting holes 8 Make sure that the motherboard is securely placed in the chassis Note Images displayed are is for illustration only Your chassis or compo f nents might look different from those shown in this manual SUPERO X9DR3 LN4F X9DRi LN4F Motherboard User s Manual 2 5 Control Panel Connectors and I O Ports The I O ports are color coded in conformance with the PC 99 specification See the picture below
20. Pin 1 Pos Beep In Pin 2 Neg Alarm Speaker SP1 FN 32 BEEP IN POS NUNC Y ALARM SPK NEG PWR LED Connector Pin Definitions Pin Setting Definition Pin 1 Anode Pin2 Cathode Pin3 NA Speaker Connector Pin Settings Pin Setting Definition Pins 4 7 External Speaker Pins 6 7 Internal Speaker wa WI CECCHI A Internal Speaker Buzzer T Ea Pa SET RENE EC TOMO Za B PWR LED Speaker Chapter 2 Installation TPM Header Port 80 A Trusted Platform Module Port 80 header is located at JTPM1 to provide TPM support and Port 80 connection Use this header to enhance system performance and data security See the table on the right for pin defini tions Langu LANGO US820 Usta TPM Port 80 Header Pin Definitions Pin on OT U Definition Pin Definition LCLK 2 GND LFRAME 4 lt KEY gt LRESET 6 5V X LAD 3 8 LAD 2 3 3V 10 LAD1 LADO 12 GND SMB CLK4 14 SMB DAT4 3V DUAL 16 SERIRQ GND 18 CLKRUN X LPCPD 20 LDRQ X a E a Ter wa WI n
21. SUPERO X9DR3 LN4F X9DRi LN4F Motherboard User s Manual 1 3 Special Features Recovery from AC Power Loss The Basic I O System BIOS provides a setting that determines how the system will respond when AC power is lost and then restored to the system You can choose for the system to remain powered off in which case you must press the power switch to turn it back on or for it to automatically return to the power on state See the Advanced BIOS Setup section for this setting The default setting is Last State 1 4 PC Health Monitoring This section describes the features of PC health monitoring of the motherboard This motherboard has an onboard System Hardware Monitor chip that supports PC health monitoring An onboard voltage monitor will scan the voltages for processor memory chipset and battery continuously Once a voltage becomes unstable a warning is given or an error message is sent to the screen The user can adjust the voltage thresholds to define the sensitivity of the voltage monitor Fan Status Monitor with Firmware Control The PC health monitor chip can check the RPM status of a cooling fan The onboard CPU and chassis fans are controlled by firmware thermal management via IPMI 2 0 Environmental Temperature Control A thermal control sensor monitors the CPU temperature in real time and will turn on the thermal control fan whenever the CPU temperature exceeds a user defined threshold The overheat circuitry runs ind
22. add a mark as a parity bit to be sent along with the data bits Select Space to add a Space as a parity bit to be sent with your data bits The options are None Even Odd Mark and Space Chapter 4 AMI BIOS Stop Bits A stop bit indicates the end of a serial data packet Select 1 Stop Bit for standard serial data communication Select 2 Stop Bits if slower devices are used The options are 1 and 2 Flow Control This feature allows the user to set the flow control for Console Redirection to prevent data loss caused by buffer overflow Send a Stop signal to stop send ing data when the receiving buffer is full Send a Start signal to start sending data when the receiving buffer is empty The options are None Hardware RTS CTS and Software Xon Xoff VT UTF8 Combo Key Support Select Enabled to enable VT UTF8 Combination Key support for ANSI VT100 terminals The options are Enabled and Disabled Recorder Mode Select Enabled to capture the data displayed on a terminal and send it as text messages to a remote server The options are Disabled and Enabled Resolution 100x31 Select Enabled for extended terminal resolution support The options are Dis abled and Enabled Legacy OS Redirection Resolution Use this feature to select the number of rows and columns used in Console Redirection for legacy OS support The options are 80x24 and 80x25 Putty KeyPad This feature selects Function Keys and KeyPad settings for Putty which is a
23. compact disc has quite a few drivers and programs that will greatly enhance your system We recommend that you review the CD and install the applications you need Applications on the CD include chipset drivers for the Windows OS security and audio drivers Question How do I handle the used battery Answer Please handle used batteries carefully Do not damage the battery in any way a damaged battery may release hazardous materials into the environment Do not discard a used battery in the garbage or a public landfill Please comply with the regulations set up by your local hazardous waste management agency to dispose of your used battery properly Refer to Section 3 3 on Page 3 6 3 7 SUPERO X9DR3 LN4F X9DRi LN4F Motherboard User s Manual 3 5 Returning Merchandise for Service A receipt or copy of your invoice marked with the date of purchase is required before any warranty service will be rendered You can obtain service by calling your ven dor for a Returned Merchandise Authorization RMA number When returning the motherboard to the manufacturer the RMA number should be prominently displayed on the outside of the shipping carton and the shipping package is mailed prepaid or hand carried Shipping and handling charges will be applied for all orders that must be mailed when service is complete For faster service You can also request a RMA authorization online http www supermicro com This warranty only covers normal
24. control panel buttons and LED indicators Refer to the following section for descriptions and pin definitions JF1 Header Pins SUPEReXSDRPINIFUXSORHURs 2 Rei 110 AE NMI X x FP PWRLED 3 3V HDD LED ID UID SW 3 3V Stby NIC1 Link LED NIC1 Activity LED NIC2 Link LED NIC2 Activity LED Blue OH Fan Fail PWR FaiL UID LED Red Blue LED Cathode Power Fail LED 3 3V Ground Reset gt Reset Button Ground PWR gt Power Button SUPERO X9DR3 LN4F X9DRi LN4F Motherboard User s Manual Front Control Panel Pin Definitions NMI Button The non maskable interrupt button header is located on pins 19 and 20 of JF1 Refer to the table on the right for pin definitions Power LED The Power LED connection is located on pins 15 and 16 of JF1 Refer to the table on the right for pin definitions 2 20 FP PWRLED NIC1 Link LED NIC2 Link LED Blue OH Fan Fail PWR FaiL UID LED Power Fail LED 19 15 NMI Button Pin Definitions JF1 Pin Definition Control G
25. for the colors and locations of the various I O ports Back Panel Connectors and l O Ports J Le JCO Jg A sese SUPER GORPUWFOGDR NR e elillile eelilliL e Q BEER Back Panel I O Port Locations and Definitions COM Port 1 Turquoise Back Panel USB Port 0 Back Panel USB Port 1 IPMI_Dedicated LAN Back Panel USB Port 2 Back Panel USB Port 3 Gigabit LAN 1 Gigabit LAN 3 Gigabit LAN 2 10 Gigabit LAN 4 11 Back Panel VGA Blue 12 UID Switch o m EX evi ge Chapter 2 Installation Serial Ports Serial COM Ports Pin Definitions Two COM connections COM1 amp A Pin Definition Pin Definition COM2 are located on the motherboard 1 DCD 6 DSR COMI is located on the Backplane I O 2 RXD 7 RTS panel COMZ located close to CPU1 3 TXD 8 CTS Slot1 PCI E slot provides front access 4 DTR 9 RI support See the table on the right for ds 5 Ground 10 N A pin definitions OOOO L Video Connection A Video VGA port is located next to USB 2 3 on the I O backplane Refer to the board layout below for the location 1 COM1 2 COM2 3 VGA
26. shared NCSI connections The WPCM450R communicates with onboard components via six SMBus inter faces PECI Platform Environment Control Interface buses and General Purpose I O ports Other Features Supported by the WPCM BMC Controller The WPCM450R supports the following features e PMI 2 0 Serial over LAN KVM over LAN LAN Alerting SNMP Trap EventLog e X Bus parallel interface for I O expansion Multiple ADC inputs Analog and Digital Video outputs e SPI Flash Host BIOS and firmware bootstrap program supported Reduced Media Independent Interface RMII OS Operating System Independency Provides remote Hardware Health Monitoring via IPMI Key features Provides Network Management Security via remote access console redirection SUPERO X9DR3 LN4F X9DRi LN4F Motherboard User s Manual Supports the following Management tools IPMIView CLI Command Line Interface e RMCP protocol supported gr 1 For more information on IPMI configuration please refer to the gt PMI User s Guide posted on our website at http www supermicro com support manuals Note 2 The term IPMI controller and the term BMC controller can be used interchangeably in this section Chapter 2 Installation Chapter 2 Installation 2 1 Static Sensitive Devices Electrostatic Discharge ESD can damage electronic components To avoid dam aging your system board it is important to handle it very carefully The
27. to configure Intelligent Platform Management Interface IPMI settings ptio Setup Utility IPMI Firmware Revision This item indicates the IPMI firmware revision used in your system IPMI Status This item indicates the status of the IPMI firmware installed in your system gt System Event Log Enabling Disabling Options SEL Components Select Enabled for all system event logging at bootup The options are Enabled and Disabled Erasing Settings Erase SEL Select Yes On next reset to erase all system event logs upon next system reboot Select Yes On every reset to erase all system event logs upon each system reboot Select No to keep all system event logs after each system reboot The options are No Yes On next reset and Yes On every reset 4 25 SUPERO X9DR3 LN4F X9DRi LN4F Motherboard User s Manual When SEL is Full This feature allows the user to decide what the BIOS should do when the system event log is full Select Erase Immediately to erase all events in the log when the system event log is full The options are Do Nothing and Erase Immediately Customize EFI Logging Options Log EFI Status Codes Select Enabled to log EFI Extensible Firmware Interface Status Codes Error Codes or Progress Codes The options are Enabled and Disabled f Note After making changes on a setting be sure to reboot the system for the changes to take effect BMC Network Configuration LAN Channel 1 This featur
28. 1 Pin Definition 5 sav 6 PWR Supply Fail A OH Fail PWR Fail LED Red UID Blue B Blue LED Cathode C PWR Supply Fail 2 22 20 19 Ground olo NMI x 4 olo x FP PWRLED o 3 3V HDD LED o ID UID SW 3 3V Stby NIC1 Link LED o NIC1 Activity LED NIC2 Link LED o NIC2 Activity LED LUE O Red Blue LED Cathode Sy over Fail LED o 3 3V Ground O Reset gt Reset Button Ground pwr gt Power Button 2 1 Chapter 2 Installation Reset Button Reset Button Pin Definitions JF1 The Reset Button connection is located on pins 3 and 4 of JF1 Attach it to a hardware reset switch on the computer case Refer to the table on the right for pin definitions Pin Definition 3 Reset Ground Power Button Power Button Pin Definitions JF1 The Power Button connection is located on pins 1 and 2 of JF1 Momentarily contacting both pins will power on off the system This button can also be con figured to function as a suspend button with a setting in the BIOS See Chapter 4 To turn off the power when the system is in suspend mode press the button for 4 seconds or longer Refer to the table on the right for pin definitions Pin Definition 1 Signal 2 Ground A Reset Button B PWR Button Gr
29. 1 PCle ports to determine how the available PCI Express lanes to be distributed between the PCI Exp Root Ports Uplink Link Speed This feature allows the user to select target link speed The options are Gen1 Generation 1 Gen2 and Gen3 CPU1 Slot2 PCI E 3 0 x4 Link Speed This feature allows the user to set the PCI Exp bus speed for the slot specified above The options are Gen1 Generation 1 Gen2 and Gen3 4 9 SUPERO X9DR3 LN4F X9DRi LN4F Motherboard User s Manual CPU1 Slot3 PCI E 3 0 x16 Link Speed This feature allows the user to set the PCI Exp bus speed for the slot specified above The options are Gen1 Generation 1 Gen2 and Gen3 CPU1 Slot1 PCI E 3 0 x16 Link Speed This feature allows the user to set the PCI Exp bus speed for the slot specified above The options are Gen1 Generation 1 Gen2 and Gen3 IIO 2 PCle Port Bifurcation Control This submenu configures the following IO PCle Port Bifurcation Control settings for IIO 2 PCle ports to determine how the available PCI Express lanes to be distributed between the PCI Exp Root Ports CPU2 Slot6 PCI E 3 0 x8 Link Speed This feature allows the user to set the PCI Exp bus speed for the slot specified above The options are Gen1 Generation 1 Gen2 and Gen3 CPU2 Slot5 PCI E 3 0 x 16 Link Speed This feature allows the user to set the PCI Exp bus speed for the slot specified above The options are Gen1 Generation 1 Gen2 and Gen3 CPU2 Slot4 PCI E 3 0 x 16 Link S
30. C Heartbeat LED Green Blinking AN Warning To prevent damage to the power supply or motherboard please use a power Front Panel Accessible USB Connections 4 5 6 7 Status SB Power On Unit Identified Normal supply that contains a 24 pin and two 8 pin power connectors Be sure to con nect these power supply connectors to the 24 pin power connector JPW1 and two 8 pin power connectors JPW2 JPW3 on the motherboard Failure in doing so will void the manufacturer warranty on your power supply and motherboard 1 6 Chapter 1 Overview Motherboard Features CPU Dual Intel E5 2600 Series Socket R LGA 2011 pro cessors each processor supports four full width Intel QuickPath Interconnect QPI links with support of up to 25 6 GT s per QPI link and with Data Transfer Rate of up to 8 0 GT s per direction Memory Integrated memory controller supports up to 768 GB of Registered RDIMM Load Reduced LRDIMM ECC or up to128 GB of Unbuffered UDIMM ECC Non ECC DDR3 800 1066 1333 1600 MHz DDR3 4 channel mem ory modules 24 modules max for RDIMMs LRDIMMs 16 modules max for UDIMMs Note For the latest CPU memory updates please refer to our Website at http www supermicro com products motherboard DIMM sizes RDIMM 1GB 2GB 4GB 8GB 16GB and 32GB 1 35V 1 5V Virtualization VT x VT d and VT c Chipset Intel C606 C602 Chipset Expan sion Slots Four 4 PCI Exp
31. Configuration For memory to work properly follow the tables below for memory installation Processor and Memory Module Population Number of CPU and Memory Population Configuration Table CPUs DIMMs 1 CPU amp CPU1 2 DIMMs P1 DIMMA1 P1 DIMMB1 1CPU amp CPU1 4 DIMMs P1 DIMMA1 P1 DIMMB1 P1 DIMMC1 P1 DIMMD1 1CPU amp CPU1 5 8 DIMMs P1 DIMMA1 P1 DIMMB1 P1 DIMMC1 P1 DIMMD1 P 1 DIMMA2 P1 DIMMB2 P1 DIMMC2 P1 DIMMD2 1CPU amp CPU1 9 12 DIMMs P1 DIMMA1 P1 DIMMB1 P1 DIMMC1 P1 DIMMD1 P1 DIMMA2 P1 DIMMB2 P1 DIMMC2 P1 DIMMD2 P1 DIMMA3 P1 DIMMB3 P1 DIMMC3 P1 DIMMD3 2 CPUs amp CPU1 CPU2 4 DIMMs P1 DIMMA1 P1 DIMMB1 P2 DIMME1 P2 DIMMF1 2 CPUs amp CPU1 CPU2 6 DIMMs P1 DIMMA1 P1 DIMMB1 P2 DIMME1 P2 DIMMF1 P1 DIMMC1 P1 DIMMD1 2 CPUs amp CPU1 CPU2 8 DIMMs P1 DIMMA1 P1 DIMMB1 P2 DIMME1 P2 DIMMF1 P1 DIMMC1 P1 DIMMD1 P2 DIMMG1 P2 DIMMH1 2CPUs amp CPU1 CPU2 9 12 DIMMs P1 DIMMA1 P1 DIMMB1 P2 DIMME1 P2 DIMMF1 P1 DIMMC1 P1 DIMMD1 P2 DIMMG1 P2 DIMMH1 P1 DIMMA2 P1 DIMMB2 P2 DIMME2 P2 DIMMF2 2 CPUs amp CPU1 CPU 13 DIMMs 24 P1 DIMMA1 P1 DIMMB1 P2 DIMME1 P2 DIMMF1 P1 DIMMC1 P1 DIMMD1 P2 DIMMG1 DIMMs P2 DIMMH1 P1 DIMMA2 P1 DIMMB2 P2 DIMME2 P2 DIMMF2 P1 DIMMC2 P1 DIMMD2 P2 DIMMG2 P2 DIMMH2 P1 DIMMA3 P1 DIMMB3 P2 DIMME3 P2 DIMMF3 P1 DIMMC3 P1 DIMMD3 P2 DIMMG3 P2 DIMMH3 SUPERO X9DR3 LN4F X9DRi LN4F Motherboard User s Manual Populating UDIMM ECC
32. DIMMA3 P2DIMMH3 P1 DIMMB1 3 Aas populate DM TR 8 M J P1 DIMMB2 8 P1 DIMMB3 a E FANZ 4 3 z 8 CPU2 E Q S E 2 3 F 3 uL z J ado ae a 3 4 E xn o2 P2 DIMMF3 6 a 3 I KE P2 DIMMF2 a Fans LEFT P2 DIMMF1 5 P2 DIMME3 a P1 DIMMD2 P2 DIMME2 P1 DIMMD1 P2 DIMME1 P1 DIMMC3 Lt P1 DIMMC2 CPU Slot PCI E 3 048 P1 DIMMC1 PCH e sasse7 P SA Note For the latest CPU Memory updates please refer to our website at http Awww supermicro com products motherboard for details 1 3 SUPERO X9DR3 LN4F X9DRi LN4F Motherboard User s Manual X9DR3 LN4F X9DRi LN4F Quick Reference VGA LAN24 LAN _USB2 3 _USB 0 1 LEZ Fi ps Ex oe BE ge 2 Ld IPMI LAN ga E E g e ke el Jamie l E BS 3 a Bi 3 z 3 gs ml S al s s ss lls 8 E g 5 s 2 e el ellellellelle 3 all
33. Fail LED o Oo 3 3V Ojo ID UID SW 3 3V Stby Sese sess o o nc Activity LED P ea o NIC2 Activity LED Oo Red Blue LED Cathode ER in de ais 3 3V Ground Reset gt Reset Button Ground pwr gt Power Button 2 21 Overheat OH Fan Fail PWR Fail UID LED Connect an LED cable to pins 7 and 8 of Front Control Panel to use the Overheat Fan Fail Power Fail and UID LED connections The Red LED on pin 7 provides warnings of over heat fan failure or power failure The Blue LED on pin 8 works as the front panel UID LED indicator The Red LED takes precedence over the Blue LED by default Refer to the table on the right for pin definitions Power Fail LED The Power Fail LED connection is located on pins 5 and 6 of JF1 Re fer to the table on the right for pin definitions SUPER X9DR3 LN4F X9DRi LN4F Motherboard User s Manual OH Fan Fail PWR Fail Blue_UID LED Pin Definitions JF1 Pin Definition 7 Red LED Cathode OH Fan Fail Power Fail5 5V SB 8 Blue_UID LED OH Fan Fail PWR Fail LED Status Red LED State Definition off Normal On Overheat Flashing Fan Fail PWR Fail LED Pin Definitions JF
34. IMM ECC Non ECC DDR3 DIMM modules To enhance memory performance do not mix memory modules of different speeds and sizes Please follow all memory installa tion instructions given on Section 2 3 in Chapter 2 Question How do update my BIOS It is recommended that you do not upgrade your BIOS if you are not experiencing any problems with your system Updated BIOS files are located on our website at http www supermicro com Please check our BIOS warning message and the information on how to update your BIOS on our website Select your motherboard model and download the BIOS file to your computer Also check the current BIOS revision to make sure that it is newer than your BIOS before downloading You can choose from the zip file and the exe file If you choose the zip BIOS file please unzip the BIOS file onto a bootable USB device Run the batch file using the format AMI bat filename rom from your bootable USB device to flash the BIOS Then your system will automatically reboot Warning Do not shut down or reset the system while updating the BIOS to prevent possible system boot failure s Note The SPI BIOS chip used on this motherboard cannot be removed Send your motherboard back to our RMA Department at Supermicro for repair For BIOS Recovery instructions please refer to the AMI BIOS Recovery Instructions posted at http www supermicro com Question What s on the CD that came with my motherboard Answer The supplied
35. IOS Setup Utilily orit et teet ec dad gala 4 1 HowToChangetheConfigurationData 4 1 Starting the Setup Utility ss siena mea S cep semada sallaya a ENEE 4 2 42 MaM S DE eni sh 4 2 4 3 o AdvancedSetupCorfigurations AMAMAMAMA A e e gt m gt gt nnns 4 3 423 m LOGS m ER YEN SM 4 23 e e ee 4 25 EN o e e e PE pd tie titan tod tele AR 4 27 AEG SECUTI PE n a ENAA 4 28 4 7 JSaVe GUEXIU c ety HE eo at e Cn uns 4 29 Appendix A BIOS Error Beep Codes A 1 BIOSErrorBeepCodes MMAMAMAMAMA A A ZZ Z gt e m gt gt m m mmm aiena nnne A 1 Appendix B Software Installation Instructions B 1 ilnstalling Software PEOGFams s cincti mae iene sessed B 1 B 2 Contiguring SuperDoctor lll riot pepe cp ee et elan B 2 viii Chapter 1 Overview Chapter 1 Overview 1 1 Overview Checklist Congratulations on purchasing your computer motherboard from an acknowledged leader in the industry Supermicro boards are designed with the utmost attention to detail to provide you with the highest standards in quality and performance Please check that the following items have all been included with your motherboard If anything listed here is damaged or missing contact your retailer The following items are included in the retail box One 1 Supermicro Mainboard Two 2 Serial ATA cables CBL 0044Lx2 e Two 2 I Pass
36. IPMB I SATA 0 5 J17 J18 JBAT1 JD1 Sisi JPIZC1 JL1 JOH1 JPEG JPW1 JPW2 JPW3 JSD1 JSTBY1 JTPM1 KB Mouse LAN1 3 LAN2 4 IPMI LAN PCI E 3 0 x16 Slots CPU1 Slot1 CPU1 Slot3 CPU2 Slot4 CPU2 Slot5 PCI E 3 0 x8 Slot PCI E 3 0 x4 in x8 Slot CPU System Fan Headers 4 pin External BMC I C Header for an IPMI Card Intel SB SATA Connectors 0 5 6 SATA Ports on X9DR3 LN4F 4 SATA Ports on X9DRi LN4F Serial Link General Purpose IO Headers T SGPIO 1 2 Onboard Battery See Chpt 4 for Used Battery Disposal Speaker Power LED Indicator Front Panel Control Header System Management SMBbus l C Header Chassis Intrusion Overheat Fan Fail LED Power Supply SMBbus C Header ATX 24 Pin Power Connector See Warning on Pg 1 6 12V 8 Pin Power Connectors See Warning on Pg 1 6 SATA DOM Device On Module Power Connector Standby Header TPM Trusted Platform Module Port 80 PS2 Keyboard Mouse G bit Ethernet Ports 1 3 2 4 IPMI Dedicated LAN 1 5 SUPERO X9DR3 LN4F X9DRi LN4F Motherboard User s Manual SCU 0 3 4 7 Storage Control Unit Connectors 0 3 4 7 X9DR3 LN4F SP1 Onboard Buzzer Internal Speaker USB 0 1 Back Panel USB 0 1 USB 2 3 Back Panel USB 2 3 USB 4 5 USB 6 7 USB 9 Front Panel Type A USB 9 Port UID Switch UID Unit Identifier Switch VGA Backpanel VGA Port X9DR3 LN4F X9DRi LN4F LED Indicators LED Description State IET Standby PWR LED Green On LE2 UID LED Blue LEM1 BM
37. M logo Select Disabled to display the POST messages Select Enabled to display the OEM logo instead of the normal POST messages The op tions are Enabled and Disabled 4 3 SUPERO X9DR3 LN4F X9DRi LN4F Motherboard User s Manual AddOn ROM Display Mode Use this item to set the display mode for the Option ROM Select Keep Current to use the current AddOn ROM Display setting Select Force BIOS to use the Option ROM display mode set by the system BIOS The options are Force BIOS and Keep Current Bootup Num Lock Use this feature to set the Power on state for the Numlock key The options are Off and On Wait For F1 If Error Select Enabled to force the system to wait until the F1 key is pressed if an error occurs The options are Disabled and Enabled Interrupt 19 Capture Interrupt 19 is the software interrupt that handles the boot disk function When this item is set to Enabled the ROM BIOS of the host adaptors will capture Interrupt 19 at bootup and allow the drives that are attached to these host adaptors to function as bootable disks If this item is set to Disabled the ROM BIOS of the host adap tors will not capture Interrupt 19 and the drives attached to these adaptors will not function as bootable devices The options are Enabled and Disabled Power Configuration Watch Dog Function If enabled the Watch Dog timer will allow the system to reboot when it is inactive for more than 5 minutes The options are Enab
38. Non ECC Memory Modules Intel E5 2600 Series Processor UDIMM Memory Support Table Ranks Per Memory Capacity Speed MT s and Voltage Vali DIMM amp Per DIMM dated by Slot per Channel SPC Data Width and DIMM Per Channel DPC See the Note below 3 Slots Per Channel 1DPC 2DPC 1 35V 1 5V 1 35V 1 5V SRx8 1GB 2GB 4GB NA 1066 NA 1066 Non ECC 1333 1333 DRx8 2GB 4GB 8GB NA 1066 NA 1066 Non ECC 1333 1333 SRx16 512MB 1GB 2GB NA 1066 NA 1066 Non ECC 1333 1333 SRx8 ECC 1GB 2GB 4GB 1066 1066 1066 1066 1333 1333 DRx8 ECC 2GB 4GB 8GB 1066 1066 1066 1066 1333 1333 Note For detailed information on memory support and updates please refer to the SMC Recommended Memory List posted on our website at http www supermicro com sup port resources mem cfm Populating RDIMM ECC Memory Modules Intel E5 2600 Series Processor RDIMM Memory Support Table Ranks Per Memory Capacity Speed MT s and Voltage Validated by Slot per DIMM amp Per DIMM Channel SPC and DIMM Per Channel DPC Data Width See the Note Below 3 Slots Per Channel 1DPC 2DPC 3DPC 1 35V 1 5V 1 35V 1 5V_ 135V 1 5V SRx8 1GB 2GB 4GB 1066 1066 1066 1066 NA 800 1333 1333 1333 1333 1066 1600 1600 DRx8 2GB 4GB 8GB 1066 1066 1066 1066 NA 800 1333 1333 1333 11333 1066 1600 1600 SRx4 2GB 4GB 8GB 1066 1066 1066 1066 NA
39. R FaiVUIDLED 2 22 Power e al LEDaren EY M 2 22 ReESeiBUTOM M 2 23 Power BUttOD linen n teet red ut pp anl ei ha in 2 23 2 0 Connecting Cabl6S 5 arte itor steeped tota amala a Er Re EAE UL ed 2 24 Power eere In Te o CR C EE 2 24 Fam m lt gt Le ge P e e e 2 25 Chassis IMTUSO annia i reU et i ete d 2 25 nternal SpeaekQE 9 ssa cece nan Dna su creep ec pep ea g men men ikame Ne ese 2 26 Power EED SDOaKOF iini rime ptite oet Cs G z pek ayal 2 26 TPM lHeader Port 80i cuc etr en tear pcr ank ada Abaya baa DURA 2 27 Power SMB FG Conm ctor s crt yi eee sen 2 28 Overheat Fan Fail LED meissont ennon E anaa T SEADen ET NEEESE ENEE 2 28 T SGPIO 12 Heades ranee her re c PO Dr RUE 2 29 DOM Power Connector tne paz aE IE gen suk I ERBEN 2 29 IPMBH cio rete tede teet ebore rd d dre rer nda 2 30 zr LU OE Tie UMN Sere acerca enact sn eee ele ei SA Sem EN UN ME sa eee Ime 2 31 Explanation Of Jumpers Kese unio sis seansa maus odana yan Fee ser EE De YS 2 31 GEAN Enable Disable norte cort ayas alam sanli 2 31 CMOS Clea PT 2 32 Watch Dog Enable Disable says msrase esas sakas teer seslen n neenon oaa en 2 32 VGA Enable sess ani ttr dr kala iy Amine enti 2 33 BMG Enable Sassy MD 2 33 2 8 Onboard LED Indicators alanla allak 2 34 GEAN A RE e AN ME SE Y N 2 34 IPMIDedicatedLANLEDS
40. SUPERO X9DR3 LN4F X9DRi LN4F USER S MANUAL Revision 1 0b The information in this User s Manual has been carefully reviewed and is believed to be accurate The vendor assumes no responsibility for any inaccuracies that may be contained in this document and makes no commitment to update or to keep current the information in this manual or to notify any person or organization of the updates Please Note For the most up to date version of this manual please see our Website at www supermicro com Super Micro Computer Inc Supermicro reserves the right to make changes to the product described in this manual at any time and without notice This product including software and docu mentation is the property of Supermicro and or its licensors and is supplied only under a license Any use or reproduction of this product is not allowed except as expressly permitted by the terms of said license IN NO EVENT WILL SUPER MICRO COMPUTER INC BE LIABLE FOR DIRECT INDIRECT SPECIAL INCIDENTAL SPECULATIVE OR CONSEQUENTIAL DAMAGES ARISING FROM THE USE OR INABILITY TO USE THIS PRODUCT OR DOCUMENTATION EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGES IN PARTICULAR SUPER MICRO COMPUTER INC SHALL NOT HAVE LIABILITY FOR ANY HARDWARE SOFTWARE OR DATA STORED OR USED WITH THE PRODUCT INCLUDING THE COSTS OF REPAIRING REPLACING INTEGRATING INSTALLING OR RECOVERING SUCH HARDWARE SOFTWARE OR DATA Any disputes arising between the manufa
41. and Disabled SERR Generation Select Enabled to allow a PCI device to generate an SERR number for a PCI Bus Signal Error Event The options are Enabled and Disabled Maximum Payload Select Auto to allow the system BIOS to automatically set the maximum payload value for a PCI E device to enhance system performance The options are Auto 128 Bytes 256 Bytes 512 Bytes 1024 Bytes 2048 Bytes and 4096 Bytes 4 15 SUPERO X9DR3 LN4F X9DRi LN4F Motherboard User s Manual Maximum Read Request Select Auto to allow the system BIOS to automatically set the maximum Read Request size for a PCI E device to enhance system performance The options are Auto 128 Bytes 256 Bytes 512 Bytes 1024 Bytes 2048 Bytes and 4096 Bytes ASPM Support This feature allows the user to set the Active State Power Management ASPM level for a PCI E device Select Force LO to force all PCI E links to operate at LO state Select Auto to allow the system BIOS to automatically set the ASPM level for the system Select Disabled to disable ASPM support The options are Disabled Force LO and Auto N Warning Enabling ASPM support may cause some PCI E devices to fail CPU1 Slot 1 PCI E 3 0 x16 OPROM CPU1 Slot 2 PCI E 3 0 x4 OPROM CPU1 Slot 3 PCI E 3 0 x16 OPROM CPU2 Slot 1 PCI E 3 0 x16 OPROM CPU2 Slot 2 PCI E 3 0 x16 OPROM CPU1 Slot 1 PCI E 3 0 x8 OPROM Select Enabled to enable Option ROM support to boot the computer using a network interface from the sl
42. ane on the motherboard In addition an IPMI_Dedicated LAN is located above USB 0 1 ports on the backplane to provide KVM support for IPMI 2 0 All these ports accept RJ45 type cables Note Please refer to the LED Indicator Section for LAN LED information Chapter 2 Installation LAN Ports Pin Definition Pin Definition 1 P2V5SB 10 SGND 2 TDO 11 Act LED 3 TDO 12 P3V3SB 4 TD1 13 Link 100 LED Yel low 3V3SB 5 TD1 14 Link 1000 LED Yellow 3V3SB 6 TD2 15 Ground Tf TD2 16 Ground 8 TD3 17 Ground 9 TD3 18 Ground NC No Connection 1 GLAN1 2 GLAN3 3 GLAN2 4 GLAN4 5 IPMI_LAN H L GL Edi SUPERO X9DR3 LN4F X9DRi LN4F Motherboard User s Manual Unit Identifier Switch UID Switch A Unit Identifier UID Switch and two LED Pin Definition Indicators are located on the motherboard 1 Ground The UID Switch is located next to the LAN 2 Ground 2 4 ports on the backplane The Rear UID 3 Button In LED LE2 is located next to the UID Switch 4 Ground The Front Panel UID LED is located at Pins 7 8 of the Front Control Panel at JF1 Con accro ie nect a cable to Pin 8 on JF1 for Front Panel UID LED indication When you press the UID switch both Rear UID LED and F
43. ase Event Log Select Enabled to erase the SMBIOS System Management BIOS Event Log which is completed before a event logging is initialized upon system reboot The options are No and Yes When Log is Full Select Erase Immediately to immediately erase SMBIOS error event logs that ex ceed the limit when the SMBIOS event log is full Select Do Nothing for the system to do nothing when the SMBIOS event log is full The options are Do Nothing and Erase Immediately SMBIOS Event Log Standard Settings Log System Boot Event Select Enabled to log system boot events The options are Disabled and Enabled MECI Multiple Event Count Increment Enter the increment value for the multiple event counter Enter a number between 1 to 255 The default setting is 1 METW Multiple Event Count Time Window This item allows the user to decide how long in minutes should the multiple event counter wait before generating a new event log Enter a number between 0 to 99 The default setting is 60 View SMBIOS Event Log This item allows the user to view the event in the SMBIOS event log Select this item and press Enter to view the status of an event in the log Date Time Error Code Severity View System Event Log This item allows the user to view the event in the system event log Select this item and press Enter to view the status of an event in the log Date Time Sensor Type 4 24 Chapter 4 AMI BIOS 4 4 IPMI Use this feature
44. askable interrupt signal for the application that hangs See the Watch Dog Jumper Settings Jumper Setting Definition Pins 1 2 Reset default Pins 2 3 NMI Open Disabled table on the right for jumper settings Watch Dog must also be enabled in the BIOS A Clear CMOS x fcn a B Watch Dog Enable 2e L CECCHI ET ONNO tA ECT 10maza SUPER X9DR3 LN4F X9DRi LN4F Rev 1 10 rr EI E pags Up Cin Chapter 2 Installation VGA Enable VGA Enable Jumper Settings Jumper JPG1 allows the user to en Jumper Setting Definition able the onboard VGA connectors The 12 Enabled Default default setting is 1 2 to enable the con P 2 3 Disabled nection See the table on the right for jumper settings BMC Enable BMC Enable Jumper JPB1 allows you to enable the Jumper Settings embedded the Winbond WPCM450R Jumper Setting Definition BMC Baseboard Management Control Pins 1 2 BMC Enable ler to provide IPMI 2 0 KVM support on Pins 2 3 Normal Default the motherboard See the table on the right for jumper setti
45. automatically detects the presence of IDE or SATA devices and displays the following items SATA Port0 SATA Port5 The AMI BIOS displays the status of each SATA port as detected by the BIOS 4 13 SUPER X9DR3 LN4F X9DRi LN4F Motherboard User s Manual SATA Mode Use this feature to configure SATA mode for a selected SATA port The options are Disabled IDE Mode AHCI Mode and RAID Mode The following are displayed depending on your selection IDE Mode The following items are displayed when IDE Mode is selected SATA Serial ATA Controller 0 1 Use this feature to activate or deactivate the SATA controller and set the compatibility mode The options for Controller 0 are Enhanced and Com patible The default of SATA Controller 1 is Enhanced AHCI Mode The following items are displayed when the AHCI Mode is selected Aggressive Link Power Management Select Enabled to enable Aggressive Link Power Management support for Cougar Point BO stepping and beyond The options are Enabled and Disabled Port 0 5 Hot Plug Select Enabled to enable hot plug support for a particular port which will allow the user to change a hardware component or device without shutting down the system The options are Enabled and Disabled Staggered Spin Up Select Enabled to enable Staggered Spin up support to prevent excessive power consumption caused by multiple HDDs spinning up simultaneously The options are Enabled and Disabled RAID Mode The
46. board It is strongly recommended that you use a high quality power supply that meets ATX power supply Specification 2 02 or above It must also be SSI compliant For more 1 13 SUPER X9DR3 LN4F X9DRi LN4F Motherboard User s Manual information please refer to the website at http www ssiforum org Additionally in areas where noisy power transmission is present you may choose to install a line filter to shield the computer from noise It is recommended that you also install a power surge protector to help avoid problems caused by power surges 1 7 Super I O The Super I O supports two high speed 16550 compatible serial communication ports UARTs Each UART includes a 16 byte send receive FIFO a programmable baud rate generator complete modem control capability and a processor interrupt system Both UARTs provide legacy speed with baud rate of up to 115 2 Kbps as well as an advanced speed with baud rates of 250 K 500 K or 1 Mb s which support higher speed modems The Super I O provides functions that comply with ACPI Advanced Configuration and Power Interface which includes support of legacy and ACPI power manage ment through an SMI or SCI function pin It also features auto power management to reduce power consumption 1 8 Advanced Power Management The following advanced power management features are supported by this moth erboard Intel Intelligent Power Node Manager NM Available when the NMView utility i
47. consumer use and does not cover damages in curred in shipping or from failure due to the alternation misuse abuse or improper maintenance of products During the warranty period contact your distributor first for any product problems 3 8 Chapter 4 AMI BIOS 4 1 Chapter 4 BIOS Introduction This chapter describes the AMI BIOS Setup utility for the X9DR3 LN4F X9DRi LN4F It also provides the instructions on how to navigate the AMI BIOS Setup utility screens The AMI ROM BIOS is stored in a Flash EEPROM and can be easily updated Starting BIOS Setup Utility To enter the AMI BIOS Setup utility screens press the lt Del gt key while the system is booting up Note In most cases the lt Del gt key is used to invoke the AMI BIOS setup gt screen There are a few cases when other keys are used such as lt F3 gt lt F4 gt etc Each main BIOS menu option is described in this manual The Main BIOS setup menu screen has two main frames The left frame displays all the options that can be configured Grayed out options cannot be configured Options in blue can be configured by the user The right frame displays the key legend Above the key legend is an area reserved for a text message When an option is selected in the left frame it is highlighted in white Often a text message will accompany it Note The AMI BIOS has default text messages built in The manufacturer retains the option to include omit or chan
48. cturer and the customer shall be governed by the laws of Santa Clara County in the State of California USA The State of California County of Santa Clara shall be the exclusive venue for the resolution of any such disputes Supermicro s total liability for all claims will not exceed the price paid for the hardware product FCC Statement This equipment has been tested and found to comply with the limits for a Class A digital device pursuant to Part 15 of the FCC Rules These limits are designed to provide reasonable protection against harmful interference when the equipment is operated in a commercial environment This equipment generates uses and can radiate radio frequency energy and if not installed and used in accordance with the manufacturer s instruction manual may cause harmful interference with radio communications Operation of this equipment in a residential area is likely to cause harmful interference in which case you will be required to correct the interference at your own expense California Best Management Practices Regulations for Perchlorate Materials This Perchlorate warning applies only to products containing CR Manganese Dioxide Lithium coin cells Perchlorate Material special handling may apply See www dtsc ca gov hazardouswaste perchlorate WARNING Handling of lead solder materials used in this product may expose you to lead a chemical known to the State of California to cause birth defects and other reproductive ha
49. e allows the user to configure the settings for LAN1 Port Update IPMI LAN Configuration This feature allows the user to decide if the BIOS should configure the IPMI setting at next system boot The options are No and Yes If the option is set to Yes the user is allow to configure the IPMI settings at next system boot Configuration Address Source This feature allows the user to select the source of the IP address for this com puter If Static is selected you will need to know the IP address of this computer and enter it to the system manually in the field If DHCP is selected the BIOS will search for a DHCP Dynamic Host Configuration Protocol server in the network that is attached to and request the next available IP address for this computer The options are DHCP and Static The following items are assigned IP addresses automatically if DHCP is selected Station IP Address This item displays the Station IP address for this computer This should be in decimal and in dotted quad form i e 192 168 10 253 Subnet Mask This item displays the sub network that this computer belongs to The value of each three digit number separated by dots should not exceed 255 Station MAC Address This item displays the Station MAC address for this computer MAC addresses are 6 two digit hexadecimal numbers 4 26 Chapter 4 AMI BIOS Gateway IP Address This item displays the Gateway IP address for this computer This should be in deci
50. eader Pin Definitions A System Management Bus header for IPMI 2 0 is located at IPMB Connect the Pin Definition 1 Data appropriate cable here to use the IPMB 2 Ground C connection on your system 3 Clock 4 No Connection um wam NT A IPMB FE ma D TEEL ER SHOE OG HOS T SUPER X9DR3 LNAF XODRLLNAF Rev 1 10 Bs HE Chapter 2 Installation 2 7 Jumper Settings Explanation of Jumpers To modify the operation of the mother board jumpers can be used to choose between optional settings Jumpers cre ate shorts between two pins to change the function of the connector Pin 1 is identified with a square solder pad on the printed circuit board See the motherboard layout pages for jumper locations f Note On two pin jumpers Closed means the jumper is on and Open means the jumper is off the pins GLAN Enable Disable JPL1 enables or disables the GLAN ports on the motherboard See the table on the right for jumper settings The default setting is Enabled USB2g usso con Jumper S
51. ectors are properly connected 3 Check that the 115V 230V switch on the power supply is properly set if avail able 4 Turn the power switch on and off to test the system if applicable 5 The battery on your motherboard may be old Check to verify that it still sup plies 3VDC If it does not replace it with a new one 3 1 SUPERO X9DR3 LN4F X9DRi LN4F Motherboard User s Manual No Video 1 Ifthe power is on but you have no video remove all add on cards and cables 2 Use the speaker to determine if any beep codes exist Refer to Appendix A for details on beep codes System Boot Failure If the system does not display POST or does not respond after the power is turned on check the following 1 Check for any error beeps from the motherboard speaker fthere is no error beep try to turn on the system without any DIMM module installed If there is still no error beep try to turn on the system again with only one processor installed in CPU Socket 1 If there is still no error beep replace the motherboard e fthere are error beeps clear the CMOS setting by unplugging the power cord and contacting both pads on the CMOS Clear Jumper JBT1 Refer to Sec tion 2 7 in Chapter 2 2 Remove all components from the motherboard especially the DIMM mod ules Make sure that the system s power is on and memory error beeps are activated 3 Turn on the system with only one DIMM module installed If the system bo
52. end the correction to the requestor the original source When this item is set to Enabled the IO hub will read and write back one cache line every 16K cycles if there is no delay caused by internal processing By using this method roughly 64 GB of memory behind the IO hub will be scrubbed every day The options are Enabled and Disabled Demand Scrub Demand Scrubbing is a process that allows the CPU to correct correctable memory errors found on a memory module When the CPU or I O issues a demand read command and the read data from memory turns out to be a correctable error the error is corrected and sent to the requestor the original source Memory is updated as well Select Enabled to use Demand Scrubbing for ECC memory correction The options are Enabled and Disabled Data Scrambling Select Enabled to enable data scrubbing to ensure data security and integrity The options are Disabled and Enabled Device Tagging Select Enabled to support device tagging The options are Disabled and En abled Thermal Throttling Throttling improves reliability and reduces power consumption in the proces Sor via automatic voltage control during processor idle states The options are Disabled and CLTT Closed Loop Thermal Throttling 4 12 Chapter 4 AMI BIOS gt South Bridge Configuration This feature allows the user to configure the settings for the Intel PCH chip PCH Information This feature displays the following PCH infor
53. ent operating frequencies is not allowed All chan nels in a system will run at the lowest common frequency 2 11 SUPER X9DR3 LN4F X9DRi LN4F Motherboard User s Manual 2 4 Motherboard Installation All motherboards have standard mounting holes to fit different types of chassis Make sure that the locations of all the mounting holes for both motherboard and chassis match Although a chassis may have both plastic and metal mounting fas teners metal ones are highly recommended because they ground the motherboard to the chassis Make sure that the metal standoffs click in or are screwed in tightly Then use a screwdriver to secure the motherboard onto the motherboard tray Tools Needed Phillips Screwdriver APP Pan head screws 12 pieces Standoffs 12 pieces if needed e i Location of Mounting Holes There are twelve 12 mounting holes on this motherboard indicated by the arrows mm Q5 SUPERO X9DR3 LN4F X9DRi LN4F Rev 1 10 T jga L SEREN e Caution 1 To avoid damaging the motherboard and its components
54. ependently from the CPU Once the thermal management firmware detects that the CPU temperature is too high it will automatically turn on the thermal fan control to prevent the CPU from overheating The onboard chassis thermal circuitry can monitor the overall system temperature and alert the user when the chassis temperature is too high Note To avoid possible system overheating please be sure to provide adequate airflow to your system System Resource Alert This feature is available when used with SuperDoctor III in the Windows OS environment or used with SuperDoctor II in Linux SuperDoctor is used to notify the user of certain system events For example you can configure SuperDoctor to provide you with warnings when the system temperature CPU temperatures 1 12 Chapter 1 Overview voltages and fan speeds go beyond a predefined range 1 5 ACPI Features ACPI stands for Advanced Configuration and Power Interface The ACPI specifica tion defines a flexible and abstract hardware interface that provides a standard way to integrate power management features throughout a PC system including its hardware operating system and application software This enables the system to automatically turn on and off peripherals such as CD ROMs network cards hard disk drives and printers In addition to enabling operating_system directed power management ACPI also provides a generic system event mechanism for Plug and Play and an operating
55. er to load the user s defaults previously saved in the system When the dialog box appears asking you if you want to restore user s defaults click Yes to restore the user s defaults previously saved in the system or click No to abandon the user s defaults that were previously saved Boot Override This feature allows the user to enter a new setting to overwrite the original setting that was saved for the following devices LAN Device UEFI Built in EFI Shell 4 30 Appendix A BIOS POST Error Codes Appendix A BIOS Error Beep Codes During the POST Power On Self Test routines which are performed at each system boot errors may occur Non fatal errors are those which in most cases allow the system to continue to boot The error messages normally appear on the screen Fatal errors will not allow the system to continue with bootup procedure If a fatal error occurs you should consult with your system manufacturer for possible repairs These fatal errors are usually communicated through a series of audible beeps The numbers on the fatal error list correspond to the number of beeps for the corresponding error A 1 BIOS Error Beep Codes BIOS Error Beep Codes Beep Code LED Error Message Description 1 beep Refresh Ready to boot 5 short beeps 1 long beep 5 beeps 1 Continuous Beep Memory error No Con In or No Con Out devices X9 IPMI Error Codes System OH No memory detected in the system
56. es the features specifications and performance of the mother board It also provides detailed information about Intel C606 C602 chipset Chapter 2 provides hardware installation instructions Read this chapter when in stalling the processor memory modules and other hardware components into the system If you encounter any problems see Chapter 3 which describes trouble shooting procedures for video memory and system setup stored in the CMOS Chapter 4 includes an introduction to the BIOS and provides detailed information on running the CMOS Setup utility Appendix A provides BIOS Error Beep Codes Appendix B lists software installation instructions SUPERO X9DR3 LN4F X9DRi LN4F Motherboard User s Manual Conventions Used in the Manual Pay special attention to the following symbols for proper system installation and to prevent damage to the system or injury to yourself Danger Caution Instructions to be strictly followed to prevent catastrophic System failure or to avoid bodily injury Warning Important information given to ensure proper system installation or to prevent damage to the components Note Additional information given to differentiate between various models or provides information for correct system setup Headquarters Address Tel Fax Email Website Europe Address Tel Fax Email Asia Pacific Address Tel Fax Website Email Tel Preface Contacting Supe
57. ettings Connector 5 i a Jumper Cap 3 2 1 Setting Pin 1 2 short GLAN Enable Jumper Setting Definition 1 2 Enabled default 2 3 Disabled wa wa WI por Ia TaN za T ZAMA Te LI Enable A GLAN1 SUPERO X9DR3 LN4F X9DRi LN4F Motherboard User s Manual CMOS Clear JBT1 is used to clear CMOS Instead of pins this jumper consists of contact pads to prevent accidental clearing of CMOS To clear CMOS use a metal object such as a small screwdriver to touch both pads at the same time to short the connection Always remove the AC power cord from the system before clearing CMOS 4 Note 1 For an ATX power supply you must completely shut down the sys tem remove the AC power cord and then short JBT1 to clear CMOS Note 2 Be sure to remove the onboard CMOS Battery before you short JBT1 to clear CMOS Note 3 Clearing CMOS will also clear all passwords Watch Dog Enable Disable Watch Dog JWD1 is a system monitor that can reboot the system when a software ap plication hangs Close Pins 1 2 to reset the system if an application hangs Close Pins 2 3 to generate a non m
58. fig ACPI ACPM Power Management Main switch override mechanism Keyboard Wake up from Soft Off Power on mode for AC power recovery Intel Intelligent Power Node Manager NM Avail able when the NMView utility is installed in the system Manageability Engine ME PC Health Monitoring CPU Monitoring Onboard voltage monitors for 1 8V 3 3V 3 3VSB 5V Standby 1 35V 1 5V Chipset Voltage and Battery Voltage CPU 7 Phase switching voltage regulator 1 8 Chapter 1 Overview e CPU System overheat LED and control e CPU Thermal Trip support e Thermal Monitor 2 TM2 support Fan Control Fan status monitoring with firmware thermal man agement via IPMI 2 0 Low noise fan speed control LED Indicators e System CPU Overheat LED e Suspend state LED e UlD Remote UID LED System e PECI Platform Environment Configuration Interface Management 2 0 support e System resource alert via SuperDoctor III e Thermal Monitor 2 TM2 support e SuperoDoctor Ill Watch Dog NMI Chassis Intrusion Header and Detection Dimensions e 13 68 L x 13 05 W 347 47 mm x 331 47 mm Note For IPMI Configuration Instructions please refer to the Embedded IPMI Configuration User s Guide available http www supermicro com support manuals 1 9 SUPERO X9DR3 LN4F X9DRi LN4F Motherboard User s Manual
59. following measures are generally sufficient to protect your equipment from ESD Precautions e Use a grounded wrist strap designed to prevent static discharge Touch a grounded metal object before removing the motherboard from the antistatic bag Handle the board by its edges only do not touch its components peripheral chips memory modules or gold contacts When handling chips or modules avoid touching their pins Put the motherboard and peripherals back into their antistatic bags when not in use Forgrounding purposes make sure that your system chassis provides excellent conductivity between the power supply the case the mounting fasteners and the motherboard Unpacking The motherboard is shipped in antistatic packaging to avoid static damage When unpacking the board make sure that the person handling it is static protected SUPERO X9DR3 LN4F X9DRi LN4F Motherboard User s Manual 2 2 Processor and Heatsink Installation A Warning When handling the processor package avoid placing direct pressure on the label area Notes Always connect the power cord last and always remove it before adding removing or changing any hardware components Make sure that you in stall the processor into the CPU socket before you install the CPU heatsink If you buy a CPU separately make sure that you use an Intel certified multi directional heatsink only Make sure to install the system board into the chassis be
60. following items are displayed when RAID Mode is selected Port 0 5 Hot Plug Select Enabled to enable hot plug support for the particular port The options are Enabled and Disabled 4 14 Chapter 4 AMI BIOS gt SCU Storage Control Unit Configuration Storage Controller Unit Select Enabled to enable PCH SCU storage devices The options are Disabled and Enabled OnChip SCU Option ROM Select Enabled to support the onboard SCU Option ROM to boot up the system via a storage device The options are Disabled and Enabled SCU Port 0 SCU Port 7 The AMI BIOS will automatically detect the onboard SCU devices and display the status of each SCU device as detected gt PCle PCI PnP Configuration PCI ROM Priority Use this feature to select the Option ROM to boot the system when there are mul tiple Option ROMs available in the system The options are EFI Compatible ROM and Legacy ROM PCI Latency Timer Use this feature to set the latency Timer of each PCI device installed on a PCI bus Select 64 to set the PCI latency to 64 PCI clock cycles The options are 32 64 96 128 160 192 224 and 248 Above 4G Decoding Available if the system supports 64 bit PCI decoding Select Enabled to decode a PCI device that supports 64 bit in the space above 4G Address The options are Enabled and Disabled PERR Generation Select Enabled to allow a PCI device to generate a PERR number for a PCI Bus Signal Error Event The options are Enabled
61. fore you install the CPU heatsink When receiving a server board without a processor pre installed make sure that the plastic CPU socket cap is in place and none of the socket pins are bent otherwise contact your retailer immediately Refer to the Supermicro website for updates on CPU support Installing the LGA2011 Processor 1 There are two load levers on the LGA2011 socket To open the socket cover first press and release the load lever labeled Open 1st on Load Lever labeled Open 1st 2 2 Chapter 2 Installation 2 Press the second load lever labeled Close 1st to release the load plate that covers the CPU socket from its locking position Press down on Load the Lever labeled Close 1st Pull lever away from 3 With the lever labeled Close 1st fully retracted gently push down on the Open 1st lever to open the load plate Lift the load plate to open it com pletely Gently push down to pop the _ load plate open 2 SUPERO X9DR3 LN4F X9DRi LN4F Motherboard User s Manual 1 Using your thumb and the index finger remove the WARNING plastic cap from the socket 2 Use your thumb and index finger to hold the CPU on its edges Align the CPU keys which are semi circle cutouts against the socket keys 3 Once they are aligned carefully lower the CPU straight down into the socket Do not drop the CPU on the socket Do not move the CPU horizontally or vertically Do not r
62. g lz lle lele PE 3 s g SEIS 2883 83 88 BI 5 x mim ag Se ps lp Ss S Z 2 2 Z O a elele lz ss E BEENIE i E I x 3 SUPER X9DR3 LN4F X9DRi LN4F T Rev 1 10 oa A U EN c a B s B i elzlzlzlizlz s s s sz s ellellellelleliek ellellellellelle E Z ENE ENER SIEIBIBIBIE SIRENE g 88S EE B ee 18 B db RUE P usc sisi z Bee r9 zi isle Lill EE 9 Notes See Chapter 3 for detailed information on jumpers I O ports and JF1 front panel connections e g indicates the location of Pin 1 e Jumpers LED Indicators not indicated are for testing only Also components that are not documented in this manual are reserved for internal use only Use only the correct type of onboard CMOS battery as specified by the manufac turer Do not install the onboard battery upside down to avoid possible explosion 1 4 Chapter 1 Overview X9DR3 LN4F X9DRi LN4F Jumpers Jumper Description Default Setting JBT1 Clear CMOS See Chapter 3 JPC1 JPC2 SMB to PCI E Slots Pins 2 3 Normal JPB1 BMC Enabled Pins 1 2 Enabled JPG1 VGA Enabled Pins 1 2 Enabled JPL1 GLAN1 GLAN2 Enable Pins 1 2 Enabled JWD Watch Dog Pins 1 2 Reset X9DR3 LN4F X9DRi LN4F Connectors Connectors Description COM1 COM2 Backplane COM Port1 Front Accessible COM2 Header CPU1 Slot1 Slot3 CPU2 Slot4 Slot5 CPU2 Slot6 CPU1 Slot2 FAN1 6 FANA FANB
63. ge any of these text mes sages The AMI BIOS Setup utility uses a key based navigation system called hot keys Most of the AMI BIOS setup utility hot keys can be used at any time during setup navigation These keys include lt F3 gt lt F4 gt lt Enter gt lt ESC gt arrow keys etc Note 1 Options printed in Bold are default settings Note 2 lt F3 gt is used to load optimal default settings lt F4 gt is used to save the settings and exit the setup utility How To Change the Configuration Data The configuration data that determines the system parameters may be changed by entering the AMI BIOS Setup utility This Setup utility can be accessed by pressing lt F2 gt at the appropriate time during system boot 4 1 SUPERO X9DR3 LN4F X9DRi LN4F Motherboard User s Manual Note For AMI UEFI BIOS Recovery please refer to the UEFI BIOS Re covery User Guide posted http www supermicro com support manuals Starting the Setup Utility Normally the only visible Power On Self Test POST routine is the memory test As the memory is being tested press the lt F2 gt key to enter the main menu of the AMI BIOS Setup utility From the main menu you can access the other setup screens An AMI BIOS identification string is displayed at the left bottom corner of the screen below the copyright message Warning Do not upgrade the BIOS unless your system has a BIOS related DS ces Flashing the wrong BIOS can cause irre
64. h the installation by fully tightening all four screws Screw 1 Motherboard Chapter 2 Installation Removing the Heatsink Warning We do not recommend that the CPU or the heatsink be removed However if you do need to uninstall the heatsink please follow the instruc tions below to uninstall the heatsink to prevent damage done to the CPU or the CPU socket 1 Unscrew the heatsink screws from the motherboard in the sequence as shown in the illustration below 2 Gently wriggle the heatsink to loosen it from the CPU Do not use excessive force when wriggling the heatsink 3 Once the CPU is loosened remove the CPU from the CPU socket 4 Remove the used thermal grease and clean the surface of the CPU and the heatsink Reapply the proper amount of thermal grease on the surface before reinstalling the CPU and the heatsink Do not reuse old thermal grease Loosen screws in sequence as shown Screw 1 Motherboard ZA Warning Do not reuse old thermal grease SUPER X9DR3 LN4F X9DRi LN4F Motherboard User s Manual 2 3 Installing and Removing the Memory Modules Note Check Supermicro s Website for recommended memory modules CAUTION Gror Exercise extreme care when installing or removing DIMM modules to prevent any possible damage Installing amp Removing DIMMs 1 Insert the desired number of DIMMs into the memory slots starting with P1 DIMM A1 For best performance please use the memo
65. he motherboard Attach an Pin Definition appropriate cable from the chassis to 1 Intrusion Input inform you of a chassis intrusion when 2 Ground the chassis is opened gl Ex A Fan 1 B Fan 2 C Fan 3 D Fan 4 E Fan 5 F Fan 6 G Fan A H Fan B Chassis Intrusion Egr erir De Por Foams na arot 3104 MASINA EDS ac Oa HOS Ma 1ST moe sro zs ineo Fa Internal Speaker The Internal Speaker located at SP1 can be used to provide audible indica tions for various beep codes See the table on the right for pin definitions Refer to the layout below for the loca tions of the Internal Buzzer SP1 Power LED Speaker On JD1 header pins 1 3 are used for power LED indication and pins 4 7 are for the speaker See the tables on the right for pin definitions Please note that the speaker connector pins 4 7 are used with an external speaker If you wish to use the on board speaker you should close pins 6 7 with a jumper SUPERO X9DR3 LN4F X9DRi LN4F Motherboard User s Manual Internal Buzzer SP1 Pin Definition Pin Definitions
66. ick the icons showing a hand writing on the paper to view the readme files for each item Click a computer icon to the right of an item to install an item from top to the bottom one at a time After installing each item you must reboot the system before proceeding with the next item on the list The bottom icon with a CD on it allows you to view the entire contents of the CD Note 2 When making a storage driver diskette by booting into a Driver CD please set the SATA Configuration to Compatible Mode and configure SATA as IDE in the BIOS Setup After making the driver diskette be sure to change the SATA settings back to your original settings B 1 SUPERO X9DR3 LN4F X9DRi LN4F Motherboard User s Manual B 2 Configuring SuperDoctor IlI The SuperDoctor Ill program is a Web based management tool that supports remote management capability It includes Remote and Local Management tools The local management is called the SD III Client The SuperDoctor III program included on the CDROM that came with your motherboard allows you to monitor the environment and operations of your system SuperDoctor IIl displays crucial system information such as CPU temperature system voltages and fan status See the Figure below for a display of the SuperDoctor Ill interface Note 1 The default user name and password are ADMIN i Note 2 In the Windows OS environment the SuperDoctor III settings take precedence over the BIOS settings When fi
67. led and Disabled Power Button Function If this feature is set to Instant Off the system will power off immediately as soon as the user presses the power button If this feature is set to 4 Seconds Override the system will power off when the user presses the power button for 4 seconds or longer The options are Instant Off and 4 Seconds Override Restore on AC Power Loss Use this feature to set the power state after a power outage Select Power Off for the system power to remain off after a power loss Select Power On for the system power to be turned on after a power loss Select Last State to allow the system to resume its last state before a power loss The options are Power On Power Off and Last State 4 4 Chapter 4 AMI BIOS CPU Configuration This submenu displays the information of the CPU as detected by the BIOS It also allows the user to configuration CPU settings gt Socket 1 CPU Information Socket 2 CPU Information This submenu displays the following information regarding the CPUs installed in Socket 1 Socket 2 Type of CPU CPU Signature Microcode Patch CPU Stepping Maximum CPU Speed Minimum CPU Speed Processor Cores Intel HT Hyper Threading Technology Intel VT x Technology ntel SMX Technology L1 Data Cache L1 Code Cache L2 Cache L3 Cache CPU Speed This item displays the speed of the CPU installed in Socket 1 Socket 2 64 bit This item indicates if the CPU i
68. mal and in dotted quad form i e 192 168 10 253 4 5 Boot This submenu allows the user to configure the following boot settings for the system Enabled CSM Support Select Enabled to support the EFI Compatibility Support Module CSM which provides compatibility support for traditional legacy BIOS for system boot The op tions are Enabled and Disabled Boot Option Priorities Boot Option 1 This item allows the user to select the first boot drive Select a LAN device to boot the system from the network connection Select UEFI to boot the system from the UEFI Built in EFI Shell The options are LAN Device UEFI Built in EFI Shell and Disabled Boot Option 2 This item allows the user to select the first boot device Select a LAN device to boot the system from the network connection Select UEFI to boot the system from the UEFI Built in EFI Shell The options are LAN Device UEFI Built in EFI Shell and Disabled 4 27 SUPERO X9DR3 LN4F X9DRi LN4F Motherboard User s Manual Network Devices Boot Option 1 This item displays the first boot device gt Delete Boot Options Delete Boot Option This item allows the user to select a boot device to delete from the boot priority list Select UEFI Built in EFI Shell to delete it from the boot priority list which will prevent system boot from the UEFI Shell The options are Select One to Delete and UEFI Built in EFI Shell 4 6 Security This menu allow
69. mation Name This item displays the name of the PCH chip Stepping This item displays the status of the PCH stepping USB Devices This item displays the USB devices detected by the BIOS All USB Devices This feature enables all USB ports devices The options are Disabled and Enabled If set to Enabled EHCI Controller 1 and Controller 2 will appear EHCI Controller 1 EHCI Controller 2 Available when All USB Devices is set to Enabled Select Enabled to enable EHCI Enhanced Host Controller Interface Controller 1 or Controller 2 The options are Disabled and Enabled Legacy USB Support Available when USB Functions is not Disabled Select Enabled to support legacy USB devices Select Auto to disable legacy sup port if USB devices are not present Select Disable to have USB devices available for EFI Extensive Firmware Interface applications only The settings are Disabled Enabled and Auto Port 60 64 Emulation Select Enabled to enable I O port 60h 64h emulation support for the legacy USB keyboard so that it can be fully supported by the operating systems that does not recognize a USB device The options are Disabled and Enabled EHCI Hand Off This item is for operating systems that do not support Enhanced Host Controller Interface EHCI hand off When enabled EHCI ownership change will be claimed by the EHCI driver The options are Disabled and Enabled gt SATA Configuration When this submenu is selected the AMI BIOS
70. nd Disabled Note If there is any change to this setting you will need to power off and restart the system for the change to take effect Please refer to Intel s website for detailed information gt CPU Power Management Configuration This submenu allows the user to configure the following CPU Power Management settings Power Technology Select Energy Efficiency to support power saving mode Select Custom to cus tomize system power settings Select Disabled to disable power saving settings The options are Disabled Energy Efficiency and Custom If the option is set to Custom the following items will display EIST Available when Power Technology is set to Custom EIST Enhanced Intel SpeedStep Technology allows the system to au tomatically adjust processor voltage and core frequency to reduce power consumption and heat dissipation The options are Disabled GV3 Disabled and Enabled GV3 Enabled Note GV3 is Intel Speedstep support used on older platforms Please refer to Intel s website for detailed information Turbo Mode Available when Power Technology is set to Custom Select Enabled to use the Turbo Mode to boost system performance The options are Enabled and Disabled C1E Available when Power Technology is set to Custom Select Enabled to enable Enhanced C1 Power State to boost system per formance The options are Enabled and Disabled 4 7 SUPERO X9DR3 LN4F X9DRi LN4F Motherboard User s Manual
71. nfiguration Intel TXT LT SX Hardware Support This feature indicates if the following hardware components support the Intel Trusted Execution Technology CPU TXT Trusted Execution Technology Feature Chipset TXT Trusted Execution Technology Feature Intel TXT LT SX Configuration This feature displays the following TXT configuration setting TXT LT SX Support This item indicated if the Intel TXT support is enabled or disabled Intel TXT LT SX Dependencies This feature displays the features that need to be enabled for the Intel Trusted Execution Technology to work properly in the system VT d Support Intel Virtualization Technology with Direct I O support VT Support Intel Virtualization Technology support TPM Support Trusted Platform support TPM State Trusted Platform state 4 21 SUPERO X9DR3 LN4F X9DRi LN4F Motherboard User s Manual gt Intel ME Subsystem Configuration This feature displays the following ME Subsystem Configuration settings ME BIOS Interface Version ME Version iSCSI Configuration This item displays iSCSI configuration information iSCSI Initiator Name This item displays the name of the iSCSI Initiator which is a unique name used in the world Intel 1350 Gigabit Network Connections These items display the following information on the Intel 1350 LAN connections gt NIC Configuration Link Speed Use this feature to change the link speed and duplex for the curren
72. ng the changes or click No to quit the BIOS and save changes Save Options Save Changes Select this option and press lt Enter gt to save all changes you ve done so far and return to the AMI BIOS utility Program When the dialog box appears asking you if you want to save configuration click Yes to save the changes or click No to return to the BIOS without making changes 4 29 SUPERO X9DR3 LN4F X9DRi LN4F Motherboard User s Manual Discard Changes Select this feature and press Enter to discard all the changes and return to the BIOS setup When the dialog box appears asking you if you want to load previ ous values click Yes to load the values previous saved or click No to keep the changes you ve made so far Restore Optimized Defaults Select this feature and press Enter to load the optimized default settings that help optimize system performance When the dialog box appears asking you if you want to load optimized defaults click Yes to load the optimized default settings or click No to abandon optimized defaults Save as User Defaults Select this feature and press Enter to save the current settings as the user s defaults When the dialog box appears asking you if you want to save values as user s defaults click Yes to save the current values as user s default settings or click No to keep the defaults previously saved as the user s defaults Restore User Defaults Select this feature and press Ent
73. ngs A VGA Enabled B BMC Enabled Vek nzu a Usta ussa Sonn wa NA wm D EEE CEE CEE Boc o3 205 inao TORO Za TONNGTA iom MAE SUPER X9DR3 LN4F X9DRi LN4F Rev 1 10 ECTS 2 33 SUPER X9DR3 LN4F X9DRi LN4F Motherboard User s Manual 2 8 Onboard LED Indicators GLAN LEDs The Gigabit LAN ports are located on the IO Backplane on the motherboard Each Ethernet LAN port has two LEDs The Yel low LED indicates activity The Link LED may be green amber or off to indicate the speed of the connection See the tables at right for more information IPMI Dedicated LAN LEDs In addition to the Gigabit Ethernet ports an IPMI Dedicated LAN is also located above the Backplane USB ports 0 1 on the motherboard The amber LED on the right indicates activity while the green LED on the left indicates the speed of the con nection See the tables at right for more information p SUPER XOORSLNFHXODRHNGFY Rev 110
74. nstalled in Socket 1 or Socket 2 supports 64 bit technology 4 5 SUPERO X9DR3 LN4F X9DRi LN4F Motherboard User s Manual Clock Spread Spectrum Select Enable to enable Clock Spectrum support which will allow the BIOS to moni tor and attempt to reduce the level of Electromagnetic Interference caused by the components whenever needed The options are Disabled and Enabled Hyper threading Select Enabled to support Intel Hyper threading Technology to enhance CPU per formance The options are Enabled and Disabled Active Processor Cores Set to Enabled to use a processor s second core and above Please refer to Intel s website for more information The options are All 1 and 2 Limit CPUID Maximum This feature allows the user to set the maximum CPU ID value Enable this function to boot the legacy operating systems that cannot support processors with extended CPUID functions The options are Enabled and Disabled for the Windows OS Execute Disable Bit Capability Available if supported by the OS amp the CPU Select Enabled to enable the Execute Disable Bit which will allow the processor to designate areas in the system memory where an application code can execute and where it cannot thus preventing a worm or a virus from flooding illegal codes to overwhelm the processor or damage the system during an attack The default is Enabled Refer to Intel and Microsoft Web sites for more information Intel amp AES NI Selec
75. ots check for bad DIMM modules or slots by following the procedure of memory error troubleshooting in this chapter Losing the System s Setup Configuration 1 Make sure that you are using a high quality power supply A poor quality power supply may cause the system to lose the CMOS setup information Refer to Section 1 6 for details on recommended power supplies 2 The battery on your motherboard may be old Check to verify that it still sup plies 3VDC If it does not replace it with a new one 3 If the steps indicated above do not fix setup configuration problems contact your vendor for repairs 3 2 Chapter 3 Troubleshooting Memory Errors When a No_Memory_Beep_Code is issued by the system check the following 1 Make sure that the memory modules are compatible with the system and that the DIMM modules are properly and fully installed For memory compatibility refer to the Memory Compatibility Chart posted on our website at http www supermicro com Check if different speeds of DIMMs have been installed It is strongly recom mended that you use the memory modules of the same speed and same type for all DIMMs in the system Make sure that you are using the correct type of DDR3 DIMM modules rec ommended by the manufacturer Check for bad DIMM modules or slots by swapping a single module among all memory slots and check the results Make sure that all memory modules are fully seated in their slots Foll
76. ots specified above The options are Enabled and Disabled Onboard LAN Option ROM Select Select iSCSI to use the iSCSI Option ROM to boot the computer using a network device Select PXE Preboot Execution Environment to use an PXE Option ROM to boot the computer using a network device The options are iSCSI and PXE Load Onboard LAN1 Option ROM Load Onboard LAN2 Option ROM Load Onboard LAN3 Option ROM Load Onboard LAN4 Option ROM Select Enabled to enable the onboard LAN1 Option ROM LAN4 Option ROM This is to boot the computer using a network device The default setting for LAN1 Option ROM is Enabled and the default settings for LAN2 Option ROM LAN3 Option ROM LAN4 Option ROM are Disabled VGA Priority This feature allows the user to select the graphics adapter to be used as the primary boot device The options are Onboard and Offboard Network Stack Select Enabled enable PXE Preboot Execution Environment or UEFI Unified Extensible Firmware Interface for network stack support The options are Enabled and Disabled 4 16 Chapter 4 AMI BIOS gt Super IO Configuration Super IO Chip This item displays the Super IO chip used in the motherboard gt Serial Port 1 Configuration Serial Port Select Enabled to enable a serial port specified by the user The options are En abled and Disabled Device Settings This item displays the settings of Serial Port 1 Change Settings Use this feature to set the optimal En
77. oun olo NMI x x FP PWRLED o 3 3V HDD LED o ID UID SW 3 3V Stby NIC1 Link LED O NIC1 Activity LED NA PERDE DR 3 o NIC2 Activity LED NIC2 Link LED Blue OH Fan Fail PWR FaiL UID LED Power Fail LED o Red Blue LED Cathode o 3 3V owes N y Ground Ground o PWR Power Butto E O Reset gt Reset Buttonfey SUPER X9DR3 LN4F X9DRi LN4F Motherboard User s Manual 2 6 Connecting Cables Power Connectors A24 pin main power supply connector JPW1 and two 8 pin CPU PWR connectors JPW2 3 are located on the motherboard These power connectors meet the SSI EPS 12V specification These power connectors must also be connected to your power supply See the table on the right for pin definitions ae To provide adequate power supply to the motherboard be sure to connect the 24 pin ATX PWR JPW1 and two 8 pin PWR connectors JPW2 JPW3 to the power supply Failure to do so will void the manufacturer warranty on your power supply and moth erboard LNs ania Usman USB E wa NT n a TNT LAN IE ELIT CEELI Gn Em E H
78. ow the instructions given in Section 2 3 in Chapter 2 Please follow the instructions given in the DIMM Population Tables listed in Section 2 3 to install your memory modules When the System Becomes Unstable A The system becomes unstable during or after OS system installation When the system becomes unstable during or after OS system installation check the following 1 CPU BIOS support Make sure that your CPU is supported and you have the latest BIOS installed in your system Memory support Make sure that the memory modules are supported by test ing the modules using memtest86 or a similar utility Note Refer to the product page on our website at http www supermicro com for memory and CPU support and updates HDD support Make sure that all hard disk drives HDDs work properly Re place the bad HDDs with good ones System cooling Check system cooling to make sure that all cooling fans and System fans work properly Check Hardware Monitoring settings in the BIOS 3 3 SUPERO X9DR3 LN4F X9DRi LN4F Motherboard User s Manual 6 to make sure that the CPU and System temperatures are within the normal range Also check the front panel Overheat LED and make sure that the Overheat LED is not on Adequate power supply Make sure that the power supply provides adequate power to the system Make sure that all power connectors are connected Please refer to our website for more information on minimum power re
79. parable damage to the sys tem In no event shall the manufacturer be liable for direct indirect special incidental or consequential damage arising from a BIOS update If you have to update the BIOS do not shut down or reset the system while the BIOS is being updated to avoid possible boot failure 4 2 Main Setup System Date When you first enter the AMI BIOS Setup utility you will enter the Main setup screen You can always return to the Main setup screen by selecting the Main tab on the top of the screen The Main BIOS Setup screen is shown below The AMI BIOS main menu displays the following information System Date This item displays the system date in Day MM DD YY format e g Wed 10 12 2011 4 2 Chapter 4 AMI BIOS System Time This item displays the system time in HH MM SS format e g 15 32 52 Supermicro X9DRi LN4 X9DR3 LN4 Version This item displays the SMC version of the BIOS ROM used in this system Build Date This item displays the date that the BIOS Setup utility was built Memory Information Total Memory This displays the amount of memory that is available in the system 4 3 Advanced Setup Configurations Use the arrow keys to select Advanced Setup and press lt Enter gt to access the following submenu items erican Megatrends Inc figuration gt Boot Features Quiet Boot This feature allows the user to select bootup screen display between POST mes sages and the OE
80. peed This feature allows the user to set the PCI Exp bus speed for the slot specified above The options are Gen1 Generation 1 Gen2 and Gen3 gt QPI Configuration Current QPI Link This item displays the current status of the QPI Link Current QPI Frequency This item displays the frequency of the QPI Link Isoc Select Enabled to enable Ischronous support to meet QoS Quality of Service requirements This feature is especially important for virtualization technology The options are Enabled and Disabled QPI Quick Path Interconnect Link Speed Mode Use this feature to select data transfer speed for QPI Link connections The options are Fast and Slow Chapter 4 AMI BIOS QPI Link Frequency Select Use this feature to select the desired QPI frequency The options are Auto 6 4 GT s 7 2 GT s and 8 0 GT s gt DIMM Configuration This section displays the following DIMM information Current Memory Mode This item displays the current memory mode Current Memory Speed This item displays the current memory speed Mirroring This item displays if memory mirroring is supported by the motherboard Memory mirroring creates a duplicate copy of the data stored in the memory to enhance data security Sparing This item displays if memory sparing is supported by the motherboard Memory sparing enhances system performance gt DIMM Information CPU Socket 1 DIMM Information CPU Socket 2 DIMM Information P1 P2
81. quire ment Proper software support Make sure that the correct disk drivers are used B The system becomes unstable before or during OS installation When the system becomes unstable before or during OS installation check the following 1 Source of installation Make sure that the devices used for installation are working properly including boot devices such as CD DVD disc CD DVD ROM Cable connection Check to make sure that all cables are connected and working properly Using minimum configuration for troubleshooting Remove all unnecessary components starting with add on cards first and use minimum configura tion with a CPU and a memory module installed to identify the problematic areas Refer to the steps listed in Section A above for proper troubleshooting procedures Identifying bad components by isolating them If necessary remove a compo nent in question from the chassis and test it in isolation to make sure that it works properly Replace a bad component with a good one Check and change one component at a time instead of changing several items at the same time This will help isolate and identify the problem To find out if a component is good swap the component with a new one to see if the system will work properly If so then the old component is bad You can also install the component in question in another system If the new System works the component is good and the old system has problems 3
82. r COM1 is Disabled and for COM2 is Enabled P Console Redirection Settings This feature allows the user to specify how the host computer will exchange data with the client computer which is the remote computer used by the user Terminal Type This feature allows the user to select the target terminal emulation type for Con sole Redirection Select VT100 to use the ASCII Character set Select VT100 to add color and function key support Select ANSI to use the Extended ASCII Char acter Set Select VT UTF8 to use UTF8 encoding to map Unicode characters into one or more bytes The options are ANSI VT100 VT100 and VT UTF8 Bits Per second Use this feature to set the transmission speed for a serial port used in Console Redirection Make sure that the same speed is used in the host computer and the client computer A lower transmission speed may be required for long and busy lines The options are 9600 19200 57600 and 115200 bits per second Data Bits Use this feature to set the data transmission size for Console Redirection The options are 7 Bits and 8 Bits Parity A parity bit can be sent along with regular data bits to detect data transmission errors Select Even if the parity bit is set to 0 and the number of 1 s in data bits is even Select Odd if the parity bit is set to 0 and the number of 1 s in data bits is odd Select None if you do not want to send a parity bit with your data bits in transmission Select Mark to
83. ress 3 0 x16 slots CPU1 Slot1 Slot3 CPU2 Slot4 Slot5 One 1 PCI Express 3 0 x8 slot CPU2 Slot6 One 1 PCI Express 3 0x4 in x8 slot CPU 1Slot2 Graphics Winbond Matrox MGA 200 Video Controller Network One Intel I350A Gigabit 100 1000 Mb s Ethernet Quad Dual Channel Controller for LAN1 LAN4 ports Winbond WPCM450R Baseboard Controller BMC sup ports IPMI_LAN 2 0 I O De vices SATA Connections SATA Ports Six 6 Two 2 SATA 3 0 Four 4 SATA 2 0 Ports X9DR3 LN4F Four 4 SATA 2 0 Ports X9DRi LN4F RAID RAID 0 1 5 10 Windows RAID 0 1 10 Linux 1 7 SUPER X9DR3 LN4F X9DRi LN4F Motherboard User s Manual SCU Connections SCU Ports 0 3 4 7 X9DR3 LN4F Only 0 3 X9DRi LN4F Only RAID Support RAID 0 1 10 Integrated IPMI 2 0 IPMI 2 0 supported by the Winbond WPCM 450R BMC Serial COM Port Two 2 Fast UART 16550 Connection 9 pin RS 232 port Keyboard Mouse Backplane USB Keyboard Mouse VGA Backplane VGA Port Peripheral Devices USB Devices Four 4 USB ports on the rear I O panel USB 0 1 USB 2 3 Four 4 USB connections for front access USB 4 5 USB 6 7 One 1 Type A USB connector for front access USB 9 BIOS 16 MB AMI Flash ROM APM 1 2 DMI 2 3 PCI 2 3 ACPI 1 0 2 0 3 0 USB Keyboard Plug amp Play PnP and SMBIOS 2 3 Power Con
84. rm Manual Revision 1 0b Release Date Aug 17 2012 Unless you request and receive written permission from Super Micro Computer Inc you may not copy any part of this document Information in this document is subject to change without notice Other products and companies referred to herein are trademarks or registered trademarks of their respective companies or mark holders Copyright 2012 by Super Micro Computer Inc All rights reserved Printed in the United States of America Preface Preface This manual is written for system integrators PC technicians and knowledgeable PC users It provides information for the installation and use of the X9DR3 LN4F X9DRi LN4F motherboard About This Motherboard The Super X9DR3 LN4F X9DRi LN4F motherboard supports dual Intel E5 2600 Series Socket R processors that offer QPI Intel QuickPath Interface Technology V 1 1 providing point to point connection with a transfer speed of up to 8 0 TG s With the C606 C602 chipset built in the X9DR3 i LN4F motherboard provides sup port for Intel Manageability Engine ME Rapid Storage Technology Digital Media Interface DMI PCI E Gen 3 0 and 1600 MHz DDR3 memory greatly enhancing system performance for high end server platforms This motherboard is ideal for HPC Cluster Database servers Please refer to our Website http www supermicro com for processor and memory support updates Manual Organization Chapter 1 describ
85. rmicro Super Micro Computer Inc 980 Rock Ave San Jose CA 95131 U S A 1 408 503 8000 1 408 503 8008 marketing supermicro com General Information support supermicro com Technical Support www supermicro com Super Micro Computer B V Het Sterrenbeeld 28 5215 ML s Hertogenbosch The Netherlands 31 0 73 6400390 31 0 73 6416525 sales supermicro nl General Information support supermicro nl Technical Support rma gsupermicro nl Customer Support Super Micro Computer Inc 4F No 232 1 Liancheng Rd Chung Ho 235 Taipei County Taiwan R O C 886 2 8226 3990 886 2 8226 3991 www supermicro com tw support supermicro com tw Technical Support 886 2 8226 5990 Technical Support SUPERO X9DR3 LN4F X9DRi LN4F Motherboard User s Manual Table of Contents Preface Chapter 1 Overview 1 1 OVI NCW M M 1 1 1 2 Processor and Chipset OVOrviGW ner med era etse eee Gen erue pets 1 11 1 9 Special Features ER e e peR EUR 1 12 1 4 JPG Health Monitoring srekli sr ter pter ee Leer slk hakan paya 1 12 1 5 AGPLEGGlUIes ARE SE MR EE RE e e NESE EEEE E 1 13 1 6 Power Supply 1 7o alo mE 1 8 AdvancedPowerManagement aieiaa 1 14 1 9 Overview of the Nuvoton WPCM450 Controller 1 15 Chapter 2 Installation 2 1 Static Sensitive D6VICGS toten eset cra pae cadena aces 2 1
86. ro com products accessories software SuperDoctorlll cfm For Linux we will still recommend that you use SuperDoctor II SUPER X9DR3 LN4F X9DRi LN4F Motherboard User s Manual Notes B 4 Disclaimer Continued The products sold by Supermicro are not intended for and will not be used in life support systems medical equipment nuclear facilities or systems aircraft aircraft devices aircraft emergency communication devices or other critical systems whose failure to perform be reasonably expected to result in significant injury or loss of life or catastrophic property damage Accordingly Supermicro disclaims any and all liability and should buyer use or sell such products for use in such ultra hazardous applications it does so entirely at its own risk Furthermore buyer agrees to fully indemnify defend and hold Supermicro harmless for and against any and all claims demands actions litigation and proceedings of any kind arising out of or related to such ultra hazardous use or sale
87. ront Panel UID LED Indicators will be turned on Press the UID switch again to turn off both LED Indicators These UID Indicators provide easy identification of a system unit that may be in need of service Color State Status Blue Unit Identified Note UID can also be triggered via VA IPMI on the motherboard For more information on IPMI please refer to the IPMI User s Guide posted on our Website http www super micro com 1 UID Switch 2 Rear UID LED LE2 3 Front UID LED 20 19 Ground o NMI x olo x FP PWRLED olo 3 3V HDD LED eje ID UID SW 3 3V Stby NIC1 Link LED O O NIC1 Activity LED o o NIC2 Activity LED Blue OH Fan Fail PWR FaiL UID LED ar o o Red Blue LED Cathode mod Ej o o 3 3V Ground Reset gt Reset Button E Ground PwR gt Power Button Jm UL 2 1 L L Ed Chapter 2 Installation Front Control Panel JF1 contains header pins for various buttons and indicators that are normally lo cated on a control panel at the front of the chassis These connectors are designed specifically for use with Supermicro s server chassis See the figure below for the descriptions of the various
88. round Power LED Pin Definitions JF1 Pin Definition 3 3V PWR LED A NMI B PWR LED Groun x o mA o x HDD LED o 3 3V ol ID UID SWI3 3V Stby ONY A O NIC1 Activity LED P o NIC2 Activity LED o Red Blue LED Cathode ada o 3 3V Ground Ground O Reset gt Reset Button O pwr gt Power Button E Chapter 2 Installation HDD LED HDD LED Pin Definitions JF1 The HDD LED connection is located on pins 13 and 14 of JF1 Attach a cable here to indicate HDD activ ity See the table on the right for pin definitions Pin Definition 13 3 3V Standby 14 HD Active NIC1 NIC2 LED Indicators GLAN1 2 LED The NIC Network Interface Control Pin Definitions JF1 ler LED connection for GLAN port 1 is Pin Definition located on pins 11 and 12 of JF1 and 9 NIC 2 Activity LED the LED connection for GLAN Port 2 is 10 NIC 2 Link LED on Pins 9 and 10 Attach the NIC LED 11 NIC 1 Activity LED cables here to display network activity 12 NIC 1 Link LED Refer to the table on the right for pin definitions A HDD LED B NIC1 Link LED C NIC1 Activity LED D NIC2 Link LED E NIC2 Activity LED 20 19 Groun olo NMI x o x FP PWRLED Qoo LED Que Link LED NIC2 Link LED Blue OH Fan Fail PWR FaiL UID LED Power
89. rst installed SuperDoctor III adopts the temperature threshold settings previously set in BIOS Any subsequent changes to these thresholds must be made within SuperDoc tor since the SD III settings override the BIOS settings For the Windows OS to adopt the BIOS temperature threshold settings please change the SDIII settings to be the same as those set in BIOS SuperDoctor Ill Interface Display Screen l Health Information SuperDoctor III Remote Management Sy Health Info P Health Information Fanl CEU Fan3 a eed ee ee zl B 2 Appendix B Software Installation Instructions SuperDoctor Ill Interface Display Screen Il Remote Control SuperDoctor III Remote Management Health Info P Remote Control Graceful power control cancelable Supero Doctor III allows a user to inform the OS to reboot or shut down the system within 30 seconds On the system console a pop up window will appear with a message telling the local user to save his working files Before the system reboots or shuts down it s allowed to cancel the action either locally or remotely Power control noncancelable Supero Doctor III allows a user to inform the OS to reboot or shut down the system right away The system will reboot or shut down without any warning messages It s not allowed to cancel the action Note The SD III utility and the user s guide can be downloaded from our website at http www supermic
90. ry modules of the same type and speed in the same bank 2 Push the release tabs outwards on both ends of the DIMM slot to unlock it Rele se Tabs ECNC 3 Align the key of the DIMM module with the receptive point on the memory slot 4 Align the notches on both ends of the module against the receptive points on the ends of the slot 5 Use two thumbs together to press the notches on both ends of the module straight down into the slot until the module snaps into place 6 Press the release tabs to the locking positions to secure the DIMM module into the slot Press both notches straight down into the memory slot at the same time Removing Memory Modules Press both notches at the ends of a DIMM module to unlock it Once it is loosened remove the DIMM module from the motherboard 2 8 Chapter 2 Installation Memory Support for the X9DR3 LN4F X9DRi LN4F Motherboard The X9DR3 LN4F X9DRi LN4F supports up to 768 GB of Registered RDIMM Load Reduced LRDIMM ECC or up to128 GB of Unbuffered UDIMM ECC Non ECC DDR3 800 1066 1333 1600 MHz DDR3 4 channel memory modules 24 modules max for RDIMMs LRDIMMs 16 modules max for UDIMMs For the lat est memory updates please refer to our Website a at http www supermicro com products motherboard Processor amp Memory Module Population
91. s installed in the system The Intel Intelligent Power Node Manager IPNM provides your system with real time thermal control and power management for maximum energy efficiency Although IPNM Specification Version 1 5 2 0 is supported by the BMC Baseboard Management Controller your system must also have IPNM compatible Manage ability Engine ME firmware installed to use this feature Note Support for IPNM Specification Version 1 5 or Vision 2 0 depends on the power supply used in the system Manageability Engine ME The Manageability Engine which is an ARC controller embedded in the PCH provides Server Platform Services SPS to your system The services provided by SPS are different from those provided by the ME on client platforms Chapter 1 Overview 1 9 Overview of the Nuvoton WPCM450 Controller The Nuvoton WPCM450R Controller a Baseboard Management Controller BMC supports 2D VGA compatible Graphic Cores with PCI interface creating multi media virtualization via Keyboard Video Mouse Redirection KVMR The WPCM450R Controller is ideal for remote system management The WPCM450R Controller interfaces with the host system via PCI connections to communicate with the graphics cores It supports USB 2 0 and 1 1 for remote keyboard mouse virtual media emulation It also provides LPC interface support to control Super IO functions The WPCM450R Controller is connected to the network via an external Ethernet PHY module or
92. s the user to configure the following security settings for the system Administrator Administrator Password Use this feature to set the Administrator Password which is required to enter the BIOS setup utility The length of the password should be from 3 characters to 8 characters long User Password Use this feature to set a User Password which is required to log into the system and to enter the BIOS setup utility The length of the password should be from 3 characters to 8 characters long 4 28 Chapter 4 AMI BIOS 4 7 Save amp Exit This submenu allows the user to configure the Save and Exit settings for the system Save Changes Discard Changes and Exit Select this option to quit the BIOS Setup without making any permanent changes to the system configuration and reboot the computer Select Discard Changes and Exit and press lt Enter gt When the dialog box appears asking you if you want to exit the BIOS setup without saving click Yes to quit BIOS without saving the changes or click No to quit the BIOS and save changes Save Changes and Reset When you have completed the system configuration changes select this option to save the changes and reboot the computer so that the new system configuration settings can take effect Select Save Changes and Exit and press lt Enter gt When the dialog box appears asking you if you want to exit the BIOS setup without sav ing click Yes to quit BIOS without savi
93. system independent interface for configuration control ACPI leverages the Plug and Play BIOS data structures while providing a processor architecture independent implementation that is compatible with Windows 7 Windows Vista and Windows 2008 Operating Systems Slow Blinking LED for Suspend State Indicator When the CPU goes into a suspend state the chassis power LED will start blinking to indicate that the CPU is in suspend mode When the user presses any key the CPU will wake up and the LED will automatically stop blinking and remain on 1 6 Power Supply As with all computer products a stable power source is necessary for proper and reliable operation It is even more important for processors that have high CPU clock rates The X9DR3 LN4F X9DRi LN4F motherboard accommodates 24 pin ATX power supplies Although most power supplies generally meet the specifications required by the CPU some are inadequate In addition two 12V 8 pin power connections are also required to ensure adequate power supply to the system Your power supply must also supply 1 5A for the Ethernet ports Warning To prevent damage to the power supply or motherboard please A use a power supply that contains a 24 pin and two 8 pin power connectors Be sure to connect these power supply connectors to the 24 pin JPW1 and two 8 pin power connectors JPW2 JPW3 on the motherboard Failure to do so will void the manufacturer warranty on your power supply and mother
94. t Enable to use the Intel Advanced Encryption Standard AES New Instruc tions NI to ensure data security The options are Enabled and Disabled Hardware Prefetcher Available when supported by the CPU If set to Enabled the hardware prefetcher will prefetch streams of data and instruc tions from the main memory to the L2 cache to improve CPU performance The options are Disabled and Enabled Adjacent Cache Line Prefetch Available when supported by the CPU The CPU prefetches the cache line for 64 bytes if this feature is set to Disabled The CPU prefetches both cache lines for 128 bytes as comprised if this feature is set to Enabled DCU Streamer Prefetcher Available when supported by the CPU Select Enabled to support Data Cache Unite DCU prefetch to speed up data accessing and processing in the DCU to enhance CPU performance The options are Disabled and Enabled 4 6 Chapter 4 AMI BIOS DCU IP Prefetcher Select Enabled for DCU Data Cache Unit IP Prefetcher support which will prefetch IP addresses to improve network connectivity and system performance The options are Enabled and Disabled Intel Virtualization Technology Available when supported by the CPU Select Enabled to support Intel Virtualization Technology which will allow one platform to run multiple operating systems and applications in independent parti tions creating multiple virtual systems in one physical computer The options are Enabled a
95. t port The op tions are AutoNeg 10Mbps Half 10Mbps Full 100Mbps Half and 100Mbps full Wake on LAN Select enabled to wake the system with a magic packet The options are En abled and Disabled Blink LEDs This feature allows the user to specify the duration for LEDs to blink The range is from 0 15 seconds PORT CONFIGURATION INFORMATION This section displays the following port information UEFI Driver Adapter PBA Chip Type PCI Device ID PCI Bus Device Function Factory MAC Address Alternate MAC Address 4 22 Chapter 4 AMI BIOS 4 3 Event Logs Use this feature to configure Event Log settings gt Change Smbios Event Log Settings gt Change SMBIOS Event Log Settings This feature allows the user to configure SMBIOS Event settings Enabling Disabling Options SMBIOS Event Log Select Enabled to enable SMBIOS System Management BIOS Event Logging during system boot The options are Enabled and Disabled Runtime Error Logging Support Select Enabled to support Runtime Error Logging The options are Enabled and Disabled Memory Correctable Error Threshold This feature allows the user to enter the threshold value for correctable memory errors The default setting is 10 PCI Error Logging Support Select Enabled to support error event logging for PCI slots The options are Enabled and Disabled 4 23 SUPERO X9DR3 LN4F X9DRi LN4F Motherboard User s Manual Erasing Settings Er
96. tion Maintained This item displays the period of time during which long duration power is main tained Recommended Short Duration Power This item displays the short duration power settings recommended by the manufacturer 4 8 Chapter 4 AMI BIOS Short Duration Power Limit This item displays the time period during which short duration power is main tained gt Chipset Configuration gt North Bridge This feature allows the user to configure the settings for the Intel North Bridge gt Integrated IO Configuration Intel VT d Select Enabled to enable Intel Virtualization Technology support for Direct I O VT d by reporting the I O device assignments to the VWM Virtual Working Memory through the DMAR ACPI Tables This feature offers fully protected I O resource sharing across Intel platforms providing greater reliability security and availability in networking and data sharing The options are Enabled and Disabled Intel I OAT The Intel I OAT I O Acceleration Technology significantly reduces CPU over head by leveraging CPU architectural improvements freeing the system resource for other tasks The options are Disabled and Enabled DCA Support Select Enabled to use Intel s DCA Direct Cache Access Technology to improve data transfer efficiency The options are Enabled and Disabled IIO 1 PCle Port Bifurcation Control This submenu configures the following IO PCle Port Bifurcation Control settings for IIO
97. to 4 Serial ATA 50 cm cables CBL 097L 02 for X9DR3 LN4F One 1 I Pass to 4 Serial ATA 50 cm cable CBL 097L 02 for X9DRi LN4F One 1 I O Shield MCP 260 00042 0N One 1 Supermicro CD containing drivers and utilities One 1 User s BIOS Manual MNL 1258 1 1 SUPERO X9DR3 LN4F X9DRi LN4F Motherboard User s Manual Motherboard Image haa nut E AR EU e ES 4 Ur gt i 4 D O 3 y 3 M a MERE E Te ETE me lew E Note All graphics shown in this manual were based upon the latest PCB Revision available at the time of publishing of the manual The motherboard you ve received may or may not look exactly the same as the graphics shown in this manual 1 2 Chapter 1 Overview Motherboard Layout CPU2 Slot5 PCLE 3 0 x16 Elit CPU2 Slo PCI E 3 0 x16 CPU Slot3 PCI E 30 x16 CPUT Slot PCI E 3 03 in X8 Slot CPU Siott PCI E 3 0 x16 i 2T P2DIMMG P2 DIMMG2 P2 DIMMG3 P1 DIMMA1 P2 DIMMH1 P1 DIMMA2 P2 DIMMH2 P1
98. ub the CPU against the surface or against any pins of the Socket to avoid damaging the CPU or the socket Warning You can only install the CPU inside the socket in one direc tion Make sure that it is properly inserted into the CPU socket before closing the load plate If it doesn t close properly do not force it as it may damage your CPU Instead open the load plate again and dou ble check that the CPU is aligned properly 2 4 Chapter 2 Installation 4 With the CPU inside the socket inspect the four corners of the CPU to make sure that the CPU is properly installed 5 Close the load plate with the CPU inside the socket Lock the lever labeled Close 1st first then lock the lever labeled Open 1st second Use your thumb to gently push the load levers down to the lever locks 1 2 Push down and lock the level Jabeled Close 1st Push down and lock the lever Lever Lock SUPERO X9DR3 LN4F X9DRi LN4F Motherboard User s Manual Installing a Passive CPU Heatsink 1 Do not apply any thermal grease to the heatsink or the CPU die the re quired amount has already been applied 2 Place the heatsink on top of the CPU so that the four mounting holes are aligned with those on the Motherboard s and the Heatsink Bracket under neath 3 Screw in two diagonal screws i e the 1 and the 2 screws until just snug do not over tighten the screws to avoid possible damage to the CPU 4 Finis
99. val To remove the onboard battery follow the steps below 1 Power off your system and unplug your power cable 2 Locate the onboard battery 3 Using a tool such as a pen or a small screwdriver push the battery lock out wards to unlock it Once unlocked the battery will pop out from the holder 4 Remove the battery Battery Battery Lock Battery Holder 1i 2 3 Proper Battery Disposal Warning Please handle used batteries carefully Do not damage the bat tery in any way a damaged battery may release hazardous materials into the environment Do not discard a used battery in the garbage or a public landfill Please comply with the regulations set up by your local hazard ous waste management agency to dispose of your used battery properly Battery Installation To install an onboard battery follow the steps 1 amp 2 above and continue below Identify the battery s polarity The positive side should be facing up Insert the battery into the battery holder and push it down until you hear a click to ensure that the battery is securely locked Warning When replacing a battery be sure to only replace it with the same type n 1 Press down until you hear a click This side up 3 6 Chapter 3 Troubleshooting 3 4 Frequently Asked Questions Question What are the various types of memory that my motherboard can support Answer The motherboard supports Registered LRDIMM ECC or UD
100. vironment Control Interface PECI setting for a serial port specified The default setting is Auto which will allow the AMI BIOS to automatically select the best setting for the PECI platform Device Mode Use this feature to select the desired mode for a serial port specified The options are Normal and High Speed P Serial Port 2 Configuration Serial Port Select Enabled to enable a serial port specified by the user The options are En abled and Disabled Device Settings This item displays the settings of Serial Port 2 Change Settings Use this feature to set the optimal Environment Control Interface PECI setting for a serial port specified The default setting is Auto which will allow the AMI BIOS to automatically select the best setting for the PECI platform Device Mode Use this feature to select the desired mode for a serial port specified The options are Normal and High Speed Serial Port 2 Attribute Use this feature to select the attribute for serial port 2 The options are SOL Serial On LAN and High Speed 4 17 SUPERO X9DR3 LN4F X9DRi LN4F Motherboard User s Manual P Serial Port Console Redirection COM 1 COM 2 These two submenus allow the user to configure the following Console Redirection settings for a COM Port specified by the user Console Redirection Select Enabled to use a COM Port selected by the user for Console Redirection The options are Enabled and Disabled The default setting fo

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