NeuroImaging-Platform (NIMG
Contents
1. 001 10000000 e enis 14 75 2 ASSOCIATINCIEDENI Sues te seh as IM rM e MU M eM UE Mr oe 21 6 3 EDITING AN ITEM PUBLIC AND NON PUBLIC 22 T OFIHERFEUNCEIONS eu odo eben cesses sei 24 SIUS ERI BRAIN COORDINAT ES eri TERRE 24 SD SEARCH RATING NTA S EEE 27 S daos DRAIN IMACES DO BROWSER 29 1 About NIMG PF 1 1 What is NIMG PF The Neuroimaging Platform NIMG PF is a database system for sharing various relevant data about neuroimaging on the Internet You can access the NIMG PF at this URL http platform nimg neuroinf jp Since NIMG PF is created based on XooNIps it has three key characteristics Flexibility of database format is constructed based a content management systems 5 called XOOPS so it permits easy design change and extension of functions Therefore even those are not familiar with the system can set up the database Variety and extendibility of data handled by database XooNIps already has stored data forms in its standard configuration and it is equipped with an extension function for handling new data forms so it is capable of handling large datasets Distribution function for meta information Since a standard protocol called OAI PMH Open2. 7 eok WAO O ONLINE 7 DECRE asap SETTE VENE 7 INFORMATION NE NSA 7 OM ed OO eset csc 8 LEG PE OD Pe E E E E ESE E EEE EE E AEE 9 ZEE PA be SIO RITM Satanic NNUS 9 EE AS NOIR WEA LOIN 9 UB DIAN eee 9 AAS ANOTE ON REGISTRATION wx cess ai Ust thats ei 10 TOJUEGISTER EPEMS oh D C IT d 11 ABOUICEIIETNDESNM 12 5 1 PUBLIC INDEX GROUP INDEX AND PRIVATE INDEX is eese ens ease 12 INDE 18 5 3 CREATING AND EDITING PRIVATE INDEX 13 6 ADDITIONAL INFORMATION ON REGISTERING ITEMS ccccccccccccccccccccccccccccccccccscscceces 14 6 1 ITEM REGISTRATION SCREEN FOR EACH
3. ae Bra fom E index ree wid Ena dh Pub rua TA File types ryprivare s3 l ecture amp 1 Free ra Mathematica Comment Program Other S Specify the Preview and Name of file s creator Settup Caption that briefly display eee the file s content to users Specify file to be attached F EM Tu Download limit E Setup for Read cor Men Setup for a Creative 7 Commons license Setup for an independent license MS ser List List ree Listing tem Est Troe ated t Specify related item s am dc ER Loo Gut L uggmris are onina 1 ungt irewaing Please seem West one Index from the cree 14 I 18 Information on base item Brain Coordinates The item type for registering the coordinate data of the activation You can search for a paper based on the display and coordinates of an activated brain map by using the search function of the brain atlas When adding coordinate data to an already registered item please enter the ID of the target item v Advanced gt Index Tree open all close all clear Public e Public 110 Binders 1 V Imaging Method 31 NIMGCente
4. item Readme Rights Setup for a Creative Commons license Index Related to Select item type Data v Please select at least one Private Index from the tree English v File types Separate the words or phrase with commas Mar 0 2008 Specify the Preview and Caption which briefly displays the file s content File Upload Caption to users Some rights reserved Allow commercial uses of your resource Oves 9No This option is effective Setup for Read Me user and event notify when item is do P Allow modifications of your resource Setup an independent ves Oves as long as others share alike license ONo All rights reserved GF Please write a related item ID per line Search iterns new window Please select at least one Private Index from the tree Next 17 Tools The following settings are available Options for Limiting the Download of Files available to anyone or available only to registered users Attaching a Read Setup of a consent agreement Setup for a Creative Commons license Decision on commercial use Decision on using correction approved approved under the same conditions of consent agreement disapproved Setup of an independent license Tool
5. OLink 9 Model cor PSUroImaging FO Brain Area 20 FOTemporal and frequency cor FOnodel 4 om 17 Link 9 3T MR imaging of the musculc A novel technique for imaging with inhomogeneods fs Ramnath R Richard Enc C agland Jerem Journal of magnetic rasonan 169622200 ft HR Charles L vt Magnetic resonance imaging comparison of iteratwe min magnetic field measurements parametric approach to orthographic pressing Tagamets M Chalmers ME Friedman R of cogni we neuroscence 2270 512 2 281 9 3 5 Evaluation of registered item It is possible for registered users to evaluate a registered item 3 6 User Menu This menu can only be displayed to registered users A registered user can register an item and exchange messages with other registered users Add New Item You can register items here Check Chapter 4 for more details P User List Users registered in NIMG PF are displayed here Group List Groups registered in NIMG PF are displayed here Event Notification You can set up approval and change of notification of events using the XOOPS function Please be sure not to set up any notification during initialization You can choose notification method between private message or e mail en Check the items you want to be Par notified of Set up notified parties The messages from other users and the moderator are stored in this i
6. Inztructions hor Copyrights Privacy Policy Site Information P uus Quum 3 2 Main Menu The following menu bars are displayed at the top of each page in NIMG PF About This Site About This Site This introduces the principles of NIMG PF and their application OSS XooNIps database mode XooNIps database mode You can go back to the main page of NIMG PF by choosing the banner on the left top of the page 2 Neurolmaging platform L X XnuMlpiE F mm Lr Fo E F BYP 7 AR ivan E ER PPS anda chs wih Sela _ eee Search with Brain Atlas search with Brain Atlas This allows you to search for a paper that reports on the brain activity of a specific site which can be arbitrarily depicted in an X Y Z cross section diagram of the brain Check Chapter 7 for more details 11227201 Neuroimaging Tutorials Neuroimaging Tutorials This provides a useful tutorial for beginners in neuroimaging research 3D Browse This is the display function for the MRI database which allows you to browse the 3D e JD Browse 3D MRI of a monkey and a human Check Chapter 7 for more details ry s u Language Switch NIMG PF is both English and Japanese language capable You can switch the language by clicking the national flag banner 3 3 Search Y
7. Oralairach OMNI Ounclear 1 T XYZ 8 2 m m Please select at least one Private Index from the tree 19 Next Model The following settings are available Options for Limiting the Download of Files available to anyone or available only to registered users Attaching a Read Me Setup of a consent agreement Setup for a Creative Commons license Decision on commercial use Decision on using correction approved approved under the same conditions of consent agreement disapproved Setup of an independent license gt XooNIps Search XOONIps User Add New Item Register Select item type Model v Advanced Please select at least one Private Index from the tree gt Index Tree ID all close all Language English v Public Title Op Public 110 O Binders 1 2 ji maging Method 31 jrutorial 4 V Brain Function 18 VE jrask 12 B jstimulation 20 Brain Area 20 Temporal and frequency L Original Program Ses with commas Satellite Henesis A Gall Other Name of file s creator E Specifying Preview and Caption that briefly display Sar m the content of the file to pecifying file to be attached AE obs Download limit Download Notificati
8. VI Private uu O ecture A Cecture ng 1 Divecture c You can automatically obtain and supply meta information if you know the ISBN Specify at least one Index from Private Index Successful Koon ps User Meny Mew ftem Msgr List Group Lak Natbhscatiorrs Iria salart at least Frivate Indax from tha trag Listing Item Paper You can automatically obtain and supply the meta information by using PubMed ID TALL Adwanood Index Tree Please select ak lasst ond Private Indes from the treo Private aa HOP acture A Ed acture B13 You can automatically obtain and supply meta information from PubMed Please specify at least one Index from Private Index You can upload the data in a PDF format paper from here BSuccesstul s e xonMIps Liser Add Now fon User bsk Trous List Hatificationg Inbox Listing Iber Et Private Trae Fiaarg at laast one Prmabe Index from the trag Who s Online 15 Presentation amp Document The following settings are available registered users Attaching a Read Me Setup for a consent agree ment Setup for a Creative Commons license Decision on commercial use Options for Limiting the Download of Files available to anyone or available only to Decision o
9. Archives Initiative Protocol for Metadata Harvesting is implemented in the NIMG PF metadata in the system have interchangeability with the database system in OAI PMH For more please see http xoonips sourceforge jp manuals usersman ja index html 2 This is the generic name for a system that comprehensively manages digital data both text and images 3 Here meta information is exchanged through automatic data collection 1 2 User of the system and user rights Moderator The moderator is the manager who sets up NIMG PF He or she manages registered users evaluates the registration of items in disclosure areas and makes decisions regarding the approval and withdrawal of items for registration Registered user A user registration is approved by the moderator to allow access to NIMG PF The registered user can Approval register items and manage the registered items He or she can also join groups with approval Cernere wer gt XooNIps Registered user gt Guest user Register Use The guest user is someone who has not registered Mo or logged in He or she is allowed to browse the items registered in the disclosure domain and download those items to which access is allowed 2 Before using NIMG PF 2 1 User registration In NIMG PF a guest user is able to access a certain amount of data However the guest is not able to register items or access the items that are accessible only by registered users To bec
10. 1999 18 183 108 120 This window is for searching only and you can t register ID Associated Item Registration confirmation screen 21 6 3 Editing an item public and non public Disclosing an item If a registered user wishes to disclose an item a Public Index must be set up and approval from the moderator must be obtained The registered user can edit the item the user has registered and also edit and disclose unpublicized items items set up for the Private Index Once the registered user completes editing by setting up the Public Index of the target item on the edit screen the moderator evaluates the content of the item and if the moderator sees no problem approval is granted Unpublicized items can also be disclosed by following this procedure Please remember that registered users shall not receive an evaluation result unless they set up the notification of an event Flow for editing to make an item public gt Index Tree Select Private Index for desired item Listing item Private Lecture A Add item Edit inde Print friendly Order by Title Select item you want to edit a Neuroimage Platform Link to http platform nimg neuroinf jp Detail Language Title Free Keywords Comment Select the Modify button Last Modified Date 2008 Creation Date Contributor Toru Uemura uemura Item Type URL Change Loa History URL http platform nimg neuro
11. D Sys 92 551 WIRE H kudai MEG th AC Tea It 60 WS dene sk FERFEARN 44 end P UPL 2E Evaluation of registered item 23 Lith Media tempore rs tha highest tirir rii ane a Neural earrelate Hakudai MiG System 19 Encoding TLE POINTS z 5th MICT 137 ath MP in enco 13 23 th tutorial video Sear 13 Hippocampal contribution 03 23 Retrieval of relational i Essig news Taco namse 03 23 h Miecdcheparal contrib h Regional analysis af h Separable routes to huma 03 22 Successful sylla l points s 100 EMT ha zt 2 ka us 2 LSE miki ind wemura 201 ird hayashi 110 eth Eunki 77 ith s unes 83 ith fujimaki 59 th sasaki S amp Menu for registered user Group List Ist 7 505 nd absent Honhcanons arid kuriki 351 eth auditory 344 th brain 331 5th event related 324 h 318 Liang Edit Prisa Trin mii 1 rro st AMAT 358 nd NIMG PF 49 b Who s Celie mis ane rilet BER SL rNma suppartipo nict 30 p Mambers 1 Gusts T more Main Display Area Themes i MBA a Theme NaMGCresn 4 hames Site Information
12. O This displays a list for brain coordinates related to the item SPOT This displays the brain coordinates corresponding to the item on the brain image You can toggle between Display or Non display for INFO SPOT by clicking here Animated description You can also use the animated operation manual for Search with Brain Atlas available at How to Use This Site which is linked to About NIMG PF in the Main Menu 28 7 3 Brain Image 3D Browser The Brain Image 3D Browser is comprised of 4 parts Upper right Operation form for cross section position angle and depth of brain Upper left Brain image viewed from above or below Lower left Brain image viewed from front or back Lower right Brain image viewed from right or left 20050829 Horsley Clarke Coordinate moveTo Left jo lle v mm Anterior MI ov 2 v mm Superior E 2 2 v mm Rotation Angle vllo Threshold 20 Description of Navigation Form You can designate the time and date of the data here 20070905 Horsley Glarke Coordinate After correcting the values the image can be moveTo refreshed by clicking this button Designate a cross section position of the brain Designate the tilt angle of the brain ws Milo ilo deg Designate the noise level 29 Button Descriptions Displays
13. Private Index You need to select at least one from this Index regardless of whether the item is to be open to all users e Only registered users have access to the item set up only for this Index Outsiders cannot enter the Private Index registered user manages this Index by himself or herself creates new items and has editing capability e Selection of more than one index is possible Private Index T Not accessible Guest Users gt Not accessible y Accessible Register Register Public Index Registered Users Group member Accessible 12 5 2 Selecting an Index 1 Please select the Index that displays the information on the registered item 2 You can select more than one Index 3 All among multiple Indexes are equal to each other 4 The upper Indexes will not be automatically added when you select a lower Index 5 You can select the upper Indexes and the lower Indexes simultaneously 6 Registered users need to judge whether both the upper and lower indexes will be added or only the one the user considers appropriate for item display 5 3 Creating and Editing Private Index Registered users can freely create and edit a Private Index so that they can efficiently manage the registered items At first only Private appears as the Index below however the user can add other Indexes under an arbitrary name at this level Capacity is limited but the ca
14. adden Enlaige Lel size search form LEVEL 4 5 Cerebra Spirte m White Matter C erebro Spinal Fluid R White Matter L White Matter R ray Matter L Unidentified Level 4 Results per page Sort Ascending order of the item Singer T Kiebel SJ Winston JS Dolan RJ Frith CD Brain responses to the acquired moral status of faces Neuron y 53 62 DETAIL INFO SPOT ueptner M Stephan KM Frith CD Brooks DJ Frackowiak RS Passingham RE Anatomy of motor learning I Frontal cortex and attention to action Journal of neurophysiology 77 1313 24 DETAIL INFO SPOT Manthey 5 Schubotz RI von Cramon DY Premotor cortex in observing erroneous action an fMRI study Brain research Cognitive brain research 15 296 30 SPC Maguire Frith CD The brain network associated with acquiring semantic knowledge The contents of items are displayed You can Display the Next 10 Search Results Cerebral activation during micturition in as shown here one at a time Change Displayed Number and Shuffle items n JE Piigatano GP Neural correlates of se SHOT cunelis prefrontal activity during awareness of visual verbal stimuli Consciousness and cognition 10 356 65 INFO SPOT DETAIL INFO AND SPOT buttons are available for each item DETAIL This displays a detailed page of the item INF
15. ally you should change the password given to you as part of the initial setup immediately after your account 15 approved The screenshots below show how to change the password Neurolmaging platform bated Lui Statistics 2007 10 19 Member Since Rank Just popping in Comments Posts 3 Input the new password in these two password boxes After entering the new password please click Save Changes at the bottom of the screen After this step your password change is complete You can change the other profile items in the edit profile window by using the same procedure 3 Screen format and basic operation 3 1 NIMG PF main page ficatian inbex Logout HiMC PF IZ 72 Er P L E5Lr T H Hiii ARA tn is aic h Baar Aii ree imaje peg Tuite Itemtypes 55 Presentation amp Doc e Inaging Tutorial 14 OBrain Function 7 4 Maski Iz B Stimulation 20 Brain 213 B TEmporal and frequency camp mle A 1 OLink 20 BrainCeordinates Bran rentem thm Index Tree items Lot PRES MTT 2246 154 MRT bara nd MEG 3 57 1197 nd li Mia corrige ts ird cERSIEEDER 1171 3rd Cognitive Neuroscience th eA JF SQUI
16. coordinates Hides coordinates Displays flat diagram Displays skin image not available on image print of human brain Mouse Operation d LN e a a The user can operate the mouse in the following ways while the coordinates are displayed v e When clicked the clicked points are set at the original j fo m oss _ pos points of the coordinates e When clicking the coordinate values of the clicked points are displayed The cross section axis can be moved by dragging Animated Description The operation instructions for 3 D Browsing is shown by animation at the How to site at the link for About NIMG PF on the main menu so please refer to that site as well 30
17. elated 52h 1 iria sc g 523 ina SoM lps Update arrived tema ist Models of abject r 05 29 3r and multitrial analy 05 29 3rd Role of left infer 03 06 4th Neural basis of sy 03 05 Sch Lateralization of 03 05 6th Neural correlates 03 05 7th funcbanal MAI a 03 03 Separating brain r 03 13 Sth Rumen cortical cir 03 03 10th Cortical invalveme 03 03 11th What happens in be 02 29 12th Human rhy Distinct IMRI resp O2 20 14th Assessing the spat 02 29 15th An MRI based parcs 02 29 16th Parametncally dis 02 29 4 Items 4 1 About Items Varied contents such as data and text are registered in NIMG PF and these are all known as items When registering an item you attach the meta information Chapter 4 2 as well as one of three types of indexes depending on the disclosure level See Chapter 5 for Public Index Group Index and Private Index 4 2 Meta Information Meta information also called meta data indicates information about an item s attributes such as registration creation explanation and usage approval The inputted content of meta information will change at the time of registration due to its having different information for each item type See 4 3 4 3 Item Type You can register nine kinds of items in total These are called Item Types and are listed below P Binder Binder is the list of registe
18. eletal Ramnath R Richard Magnetic resonance cinmcs of North Presentati Presents5on amp ric e NIRS Oruhlic 112 FUERTES indowas f 4 forms critical role for the anterior hippocampus r a j s nasaia Study comparrig associate and mem recognition Integrated measurement np jiovanello Kelly Sullivan Schnyer David M Tool 0 Indexes 11 Items MRI 151 Hippocampus 2004 14 1 5 8 PMID 15058477 PET 35 Tool contains nro es anahecic fav 5 MRI 5 poy and sad affe 7 oof antan pm O Integrated measurement d Integrated ex fMRI MEG ERF 98 aune m py sad m Wu D Indexes 15 Items terse maler MI Fu alton Andrew meuroimaging expe 54 Human brain mapping 2007 28 2811 3 Order by Tim NIRS 4 FO Brain Function 18 Je Integrated measurement d daran for an accurate T1 relaxation tme measur hame mhomogeneity in magnetc resonance Imaging Model lt 12 1 Integrated analysis f here Sekino M Iriguchi Ueno 9 FO stimulation 20 FO rutarial 4 JOURNAL OF APPLIED PHYSICS 200 97 9710 214 F Brain Function 18 Task 12 Brain 20 Temporal and frequency co Model 4 Technology 17
19. gister At least one item is required ID Title Sample Free Keywords Public Private Comment OPrivate 99 Lecture A Items to be registered Lecture B Lecture C 4 Click Resister after confirming there 15 no mistake in the entered information on the Register page 5 When you select Public Index you see a window displaying Approval from moderator This is the end of the registration process Once the moderator approves the item it will be open to user You will not receive a notice of decision from the moderator unless you set up Event Notification See p 7 for more details on Setting Up Event Notification 11 5 About the Index 5 1 Public Index Group Index and Private Index You need to set up an Index at the time of item registration You can set up the following three Indexes according to the open level of the item Also you can change the Index setup even after registration Public Index The Index which all users can access Users need to set up this Index for items that are to be open to anyone terms in the Index cannot to be edited e Selection of more than one index is possible Group Index Users who belong to a certain group have access to this Index An item used in a group needs to be set up with the Group Index A group manager creates the terms in the Index with no editing allowed e Selection of more than one index is possible
20. her Functions 7 1 Brain Coordinates The Brain Coordinates setup adds brain coordinate information such as brain coordinates and cognition function to the information of other items such as Paper and Data so called base items Enter ID of target item when you add coordinate data to the already registered item Information on the base item e g Paper Book Information on Brain Coordinate Supplementing base item information When the base item is already registered you can automatically input the base item information by entering its ID in the base item ID box and pressing the Complete button Please remember that changes to the information of the base item are not reflected in the original base item Registering the base item as a new item When you want to register the base item as a new item select an item type and enter the required information in the box designated for each type In this case please leave the Base Item ID box empty Through this registration procedure you can register both the base item and the Brain Coordinates simultaneously 24 Supplement information by entering ID Base item ID oS Select the type Base Item Type Select P Brain Coordinate item information Enter the information of Brain Coordinate items such as Cognition Function and Brain Domain Name in addition to entering the base item Please separate multiple domains with one by
21. i Neurolmaging platform NeuroImaging Platform NIMG PF User Manual visa 1 Ed d WV TA Mics NIMCO PE geen Sore aa ce here Saige casein D DL 1 1 2 USER OF THE SYSTEM AND USER RIGHTS cccccecesceccscececcecescscecescesescecescecscscstscesescesesceseseecess 1 2 BEFORE USING ccccccsccscccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccoes 1 0 d SER RC Es PRA BLO IN ated teed 1 Sern tec EA 3 Bly TNC 3 3 SCREEN FORMAT AND BASIC OPERATION cccccccccccccccccccccccccccccccccccccsccsccccccccccccccccccsscccccccoecs 4 ss a O ac RE 4 d test 5 VID I RISE TRE 6 EM pee Se en 6 hep eats 6 es USRR MEN S eder teneis
22. inf jp Banner File Index Public Private Lecture A Related to Add to public index Public 11 22 Put check marks on all indexes you 4 need in the Public Index Tree Neuroimage Platform Be Publicl 111 FO Binders 14 Mert 1127 Tutanialf4 Brain Furctiong 18 J ask 12 20 Brain 207 and frequency i PE edek z 6656666 PET echraolugqyt17 D ink Edit meta information To go to confirmation screen Language English Title Neuroimage Platform Comment Last Modified Date Apr 18 2008 11 09 52 Creation Date Apr 18 2008 11 09 52 Contributor Toru Uemura uemura Item Type URL Change Log Modified Index http platform nimg neuroinf jp The Index you check Ni will be set up ubic ink If there no more changes to HIER be made to the content click update to complete editing Non disclosure of an item In order to set the item as non disclosed you only need to set a Private Index without setting any Public Index You may set an item to be non public by editing it after registration in the same way as setting an item to be disclosed as shown above You can change the setting for an item from disclosed to non disclosed by removing the Public Index that you marked in the process above You don t have to receive approval from the moderator in this case 23 7 Ot
23. ins Powe omt PDF anc nted it inference Tool I con for controling experimenta Brain C m stimuli a or analysis of data obtained in the activation ontains a list of URLs including the informator he neuroimaging researches P XooNips Ranking contams audio visual and othe for educanona impose ndthose presented in obtained in the experime BrainCoordinates Sordinabes cor 5 Usina contams the coordinates of brair search with Brain Atlas on the The ranking of items by number of times browsed and number of times downloaded among all registered items XooNips Update Displays the updated history of registered items Ranking mast accessed mer ist HAEA 248 A and 229 3rd Introduction to mon 4th Develoomernt of Heur 174 Sth Gevelooment of SQUID bth 153 7th H 150 206 158 mast downloaded ist Hokwca MEG System ii 2nd 10 yd 9 ath ntraguction b man n BER HUIF Drevelapmant SQUIB S 5 B T 4D 7th MICH Sar 4 mast active contnmoautors Ist niki 210 3X and hayashi 110 3rd uemura 102 ath s 51 Sch kunki 53 oth sasaki fujimaki 377 most searched keywords 1st 70 W 5 735 kurik ened Jard absent 62 ath auditory BB Bth Brar event r
24. istration site will be sent to you automatically by e mail Please register at the site after which the moderator will evaluate your application D Applying for a new registration TU 2 Automatic delivery of URL for account registration to the registered mail account 3 Account registration at the site of delivered URL D Approval Moderator 2 2 Login After your account is approved please log in by inputting your username and password in login at the top of the main page v 2 m Pass Regis LostPass Do wNeurolmaging platform DU C XooNIps K iii RAAS 2 5 Utilities 30 Browse 3DBrc ve About This Site XoaNlps database mode search with Brain Atlas Neuroimaging Tutorials gt XooNIps Login gt Registered Itemtypes 1 Book Book contains introductory textbook encyclopedia 5 co LU Neuroimaging researches Username Password information of peer reviewed 10 resea rches Lost Password R Presentation amp Doc Data Presentation amp Doc contains Power Point PDF and video Data contains audio visual and other stimuli presented in Register now files available for educational purposes and those neuroimaging experiments and raw data obtained in the 2 3 Editing your profile After login you can edit your profile for instance changing your password Actu
25. ly for registering an item the registered user has access to the item but other users are not allowed to access it You need to select more than one Public Index and obtain approval from the moderator for the item to be open to the public When you select Group Index and obtain the approval from the group manager only designated group members will then have access to the item 10 4 5 How to Register Items To start registration click Registration of New Item from the User Menu gt XooNIps User Menu Add New I amp m User List Book Paper PresentationsDoc Group List Notifications Select Add New Item from Inbox User Menu Listing Item BrainCoordinates Edit Private Tree Logout Xoops Search Please select least c Index Tree Private O ecture A O Hem de registered Please select at least Privabe Index from the tree oo XooNIps D Specify the type of item 2 Enter the item s meta information The boxes marked with are required Please take care in entering information since the meta information content differs for each item 3 Designate the Index for entering the item You need to designate at least one Index from the Private Index see Chapter 5 for more details Click the Next button after filling out all of the required boxes gt XooNIps Search Re
26. n using correction approved approved under the same conditions of consent agreement disapproved gt XooNIps Search XooNips User Register Advanced gt Index Tree oper alll gt se clear Public Private ID Language Title O pPublic 110 Binders 1 imaging Method 31 Trutorial 4 Brain Function 18 Trask 12 JStimulation 20 Brain Area 20 Temporal and frequency c vords Free Key Comment Name of the file s creator Presentation type Creator Specify the file to be attached Preview entation File Download limit Limitati Xoo The items that the evaluation is the highest TITLE POINTS Readme Successful s 6points Rights Spoints XooNIps User Menu License setup for Creative Commons Notifications Inbox Index Listing Item Related to Edit Private Tree opecify related item s 2 user s are online 2 user s are browsing XooNIps Logout Members 1 Download Notification Add New Item Please select at least one Private Index from the tree Select on gt Some rights reserved Allow irem Presentation amp Dog v File types English v Lotus Separate the words phrases vith HTML PDF opecify the Preview and Caption that briefly display the file s c
27. nbox Inbox h Item Listing The list of items registered by you is displayed here Edit Private Tree You can create or edit your private tree here More details are explained in Chapter 5 F Logout This allows you to log out 3 7 Who s Online This displays who is currently online 3 8 Themes You may change themes by selecting from among several in the overview such as layout 3 9 Site Information This allows you to see various pieces of information on NIMG PF Instructions for Use Operating environment and instructions for use are listed here Copyrights This explains the copyright details for each item and the data handled by NIMG PF Privacy Policy This explains how a registered user s personal information 15 handled Operation Matrix Listed are the contact addresses of the NIMG PF committee the Brain Science Institute and the Neuroinformatics Japan Center of RIKEN 3 10 Main Screen The main screen occupies most of the space on the main page The information for registered items is displayed here three categories Registered Item Types You can search for the registered items by type see Chapter 4 for more details regarding Item Type Click the item banner to list the items you wish to be displayed 7 ntroduchory textbor and relatec books to neuroimaging researches R Presentation amp Doc esenta deo files available auon Voc conta
28. of Item Registration Screen Please register one ID per line If you don t know the Item ID click Search tems new window to open a search window to search for your desired item s ID Enter Item ID here Search for related item open search window Please select at least one Private Index from the tree Listing item Private 99 Lecture A Lecture B 1 Lecture C 3T MR imaging of the musculoskeletal system Part I considerations coils and challenges Ramnath R Richarc Magnetic resonance imaging clinics of North America 2006 PMID 16530633 A comparison of iterative minimum norm estimation and current dipole estimation for magnetic field measurements from small animals Jchida S Iramina K Goto K Ueno S IEEE TRANSACTIONS ON MAGNETICS 2000 36 365 3724 3726 A multimodal language region in the ventral visual pathway B chel C Price C Friston k Nature 1998 394 6690 274 7 PMID 9685156 parametric approach to orthographic processing in the brain an fMRI study Tagamets M A Novick J M Chalmers M L Fnedman R B Journal of cognitive neuroscience 2000 12 2 281 97 PMID 10771412 eiamaqnetic approaches to studying the brain ALL Medicine tressen1990 It m ID Advanced pas A gt r Biomagnetic approaches to studying the brain techniques for understanding human memory gt IEEE ENGINEERING IN MEDICINE BIOLOGY MAGAZINE
29. ome a registered user it is necessary to apply for an account and receive approval from the moderator First select Register new registration at the top of the main page and input all of the necessary items marked with an asterisk in the application account windows in English Then submit the application form Also be sure to input None in the section for affiliation if you are not affiliated with any institution such as a school or company Pass m Register astPass i Neurolmaging platform NIMG PFIZ OU C XooNIpsE K M4X p927AM J About This Site XooNIps database mode search with Brain Atlas m Neuroimaging Tutorials Utilities 30 Browse 30 Browse XooNIps Login gt Registered Itemtypes Username Book Password Book contains introductory textbook encyclopedia and Paper contains bibliographic information of peer reviewed related books to neuroimaging researches journal papers on neuroimagin Login New registration Lost Password R Presentation amp Doc 5 auon amp Doc contains Power Point PDF and video Data contains audio visual and other stimuli presented in files available for educational purposes and those neuroimaging experiments and raw data obtained in the Registration procedure In order to prevent spoofing there are two application stages After sending in the first application the URL of the official reg
30. on Oves N gt XooNIps This optic Free Keywords L Separate the words or phy Comment The items that the evaluation is the highest Readme TITLE POINTS Rights Some rights reserved Successful 5 6points Allow commercial uses of your resource Spoints Nes gt Setup for a Creative Allow modifications of your resource Commons license Oves as long as others share alike Setup for an User Li independent license E rights reserved gnts reservec Group List Notifications Index Inbox ease write a related item ID per line Listing It Specifying related item s gt Who s Online h iterns new window Searc 3 user s are online 2 user s are browsing XooNIps Please select at least one Private Index from the tree Next Members 1 Guests 2 20 URL ALL v Select item type URL v Advanced Please select at least one Private Index from the tree Index Tree Private 99 Lecture B 1 Please select at least one Private Index from the tree 6 2 Associating Items You can associate already registered items by specifying the item you wish to associate with the Item ID which the system automatically distributes Type the target 1tem ID in the box at the bottom
31. ontent to users fes ONo Allow modifications of your resource vac s as long as others share alike commercial uses of your resource m Setup of Read me and over Setup of an independent license Please select at least one Private Index from the tree 16 Data The following settings are available Options for Restricting the Download of Files available to anyone or available only to registered users Attaching a Read Me Setup for a consent agreement Setup for a Creative Commons license Decision on commercial use Decision on using correction approved approved under the same conditions of consent agreement disapproved Setup for an independent license v Advanced gt Index Tree open alil close all Private 99 Lecture A Lecture B 1 Lecture C Register ID Language Title Free Keywords Name of file s creator Specify file to be attached highest TOILE POINTS Successful s 6points jap8B S5points Group List Notifications Inbox Listing Item Edit Private Tree gt Who s Online 1 user s are online 1 user s are browsing XooNIps Members 1 Guests 0 Specify related item s Date Data type Preview Data File lownload Limitation gt XooNI ce Download limit nl amp ad Notification
32. ou may search for the registered items by entering a keyword It is possible to refine your search by entering multiple keywords with AND with space or specific items XooNIps Search Enter the keyword for search Specify the range of the search Also you can make an advanced search by specifying the date or other attribute for each item after clicking Advanced Search User Search Advanced Search 3 4 Index Tree The Index Tree is an index for classifying and managing registered items in an easy to understand format You can search for a group of registered items by selecting the item in the Index Tree Its hierarchical structure allows you to refine your search from top to bottom of the hierarchy Neurolmaging platform NIMG PFIZ SLT XooNIps E F ICE XeoNIps Search Listing item About Thh Ske Kc on dated f Public Imaging Method Add a D inde es 151 Items gt XooNIps Search gt Index Tree ALL Registered iter Ses 1 Bool gt Index Tree Book ita pen Opublic 112 FO Binders 1 Listing Hem v Public 7 Imaging Method 7 MRI Add item Order by nt and related books indexes 35 Ibams er MEG ERF D indexes 99 Items EEG ERP D Indexes 54 Items 31 MR imaging of the musculosk
33. pacity is not limited when the item is open to the public Switch the tab to Private in Index Tree gt Index Tree Screen for Creating a Private Index By selecting Edit Private Tree in User Menu the screen for creating and editing appears D Confirm the Index you are currently focused on gt XooNIps Search 2 Enter the Index name that goes under the Index you are focused on Private Lecture OPrivate 99 3 Click Fesister Please follow the same procedure to add a new Index 13 P Screen for Editing a Private Index Edit Private Tree gt XooNIps Search XOONIps User Edit Index Keyword Private Advanced Add gt Index Tree Number of Pris To change the order select it New Index K Private 99 Click the checkbox for the Index subject to be edited Listing item Home Modify Index Keyword Rename to 1 Up Down O Lecture B Up Down Lecture C 6 to With selected delete Listing item Home Changing the Index name Click after entering the new Index name in Rename to el To change item hierarchy select destination by using Private 3 Lecture B Lecture C 6 Additional information on Registering Items 6 1 Item Registration Screen for Each Type h Binder The
34. r Base item ID e g Paper Book B Temporal and frequency c 2 9 17 O Link 9 Free Keywords Comment Author gt XooNIps The items that the evaluation is the highest TITLE POINTS Journal Publication Year Successful s volume 6points 5points Number gt XooNIps User Menu Page Add New Item Abstract User List Group List Notifications PDF Reprint Inbox Index Listing Item Related to Edit Private Tree Brain Coordinate information browsing XooNIps Members 1 Guests 1 Brain 4reas uemura more gt Themes Reference NIMGTest PETIT out ct tate lt 7 themes Coordinate Type gt Site Information Instructions for Use Copyrights Base Item Type Select MD XNPNIMGCENTER COGFUNC Brain Coordinates List style Select item type BrainCoordinates Pleas select at least one Private Index from the tree Paper v English v Complete Se par ate the uu rds or p hrases with com m as Please write 1 person per line e g Smith J Brown MN Unidentified Inter Hernispher ic Left Cerebrum v
35. red items related to a specific theme and displayed in the Private Index or Public Index You can easily know what kinds of items are registered for each specific theme Book This is the item type for registering books on neuroimaging If you know its ISBN you can automatically obtain and save the book s information by entering the ISBN This is the item type for registering scholarly papers If you know the PubMed ID you can Paper enter it to automatically obtain and save the meta information through MedLine ie Presentation amp Doc This item type 15 for registering presentation materials and lecture materials Ril Data This item type is for registering the data of audio visual stimuli used experiments and raw data for measurement it Tool This item type is for registering the program for stimulus presentation and data analysis b BrainCoordinates This item type is for registering the coordinate data of the activation region Registering the coordinate data enables you to search for a paper based on its coordinates b Model This item type is for registering simulators constructed from models based on experiments as well as the experimental results Burr This is the item type for registering a web site with information content on neuroimaging 4 4 A Note on Item Registration Please take care to note the following considerations at the time of item registration About copyrigh
36. s please click Next to go to the confirmation screen If you see any errors on the confirmation screen please click Go Back to return to the registration screen and correct the data If you don t see any mistakes on the displayed screen please click Register 25 Register Coordinate type 15 ID Language English PubMedID Title Sample Comment Author Sample Journal Samle Publication Year 2008 volume Number Page Abstract PDF Reprint Index Related to Base item ID Cognitive Functions Brain Areas Reference Coordinate Type Talairach Brain Coordinate 1 Brain Coordinate 2 Brain Coordinate 3 Example confirmation screen Once you register the item without any problem you will see the following screen indicating that the item was successfully registered Succeed If the page does not automatically reload please click here Animated Description You can also use the animated operation manual for Brain Coordinates available at How to Use This Site which is linked to About NIMG PF in the Main Menu 26 7 2 Search with Brain Atlas This is the search mode used to search for items corresponding to specified brain coordinates The current coordinate values are shown in these Click the brain image to specify the coordinates boxes where you can directly enter the numerical value to specify the coordinates LON If you select a brain domain from the list a
37. screen displays related items by listing them in an easy to understand way Private and Public Indexes can be added to a Binder according to the degree of openness Put a check mark on the item you wish to add Order by Last Modified Date v Y a No Item per page 5 447 Items PREV 1 2 3 4 5 6 7 8 9 10 NEXT Click the Item List Neural correlates of actual and predicted memory formation Kao Yun Ching Davis Emily S Gabrieli John DE Nature neuroscience 2005 8 12 1776 83 PMID 16286927 How emotion enhances the feeling of remembering Sharot Tali Delgado Mauricio R Phelps Elizabeth 4 Nature neuroscience 2004 7 12 1376 80 PMID 15558065 critical role for the anterior hippocampus in relational memory evidence from an fMRI study comparing associative and item recognition Giovanello Kelly Sullivan Schnyer David M Verfaellie Mieke Hippocampus 2004 14 1 5 8 PMID 15058477 fMRI BOLD response to increasing task difficulty during successful paired associates learning Gould RL Brown prem 5 surokmage 200 Click Select Human theta oscil aze navigation Kahana M J Seku liem PREV 1 23 45 6 7 8 9 10 NEXT 14 P Book You can automatically obtain and supply meta information by using the ISBN Xow ps Search ALL art item moak Advanced Pleaca salart at least one Frivate Index trom the trag index Tree
38. t Consent is required from test subjects for registering a database item concerning them on the Internet also there needs to be confirmation that there is no problem in terms of intellectual property rights The copyright of the item registered in NIMG PF shall not be transferred Thus the registered user himself or herself needs to obtain consent from the owner of a copyright for the nonexclusive right to duplicate and distribute the item in NIMF PF The registered user also needs to discuss with the copyright owner approval conditions for downloading and using the items NIJC and NIMG PF are not responsible for any decisions regarding such conditions In the case of a complaint from the owner of a copyright we will refer the case to the registered user who shall be responsible for handling the matter Registered user Owner of gt copyright A Condition of Usage The right of PF to duplicate and distribute item a Registered qu Owner of xl Condition of usage 5 B opyright B Ion PF Committee h PDF Data under Paper Item You can register PDF data in a paper under Paper Item However only the user who registered the PDF data is allowed to access the data while other users are prohibited from doing so due to copyright ownership of the publishing company About Item Disclosure see Chapter 6 for more information on the disclosure of an item When you select Private Index on
39. t left s i 3 and transfer it to the right the brain domain will be E e 27 displayed red on the brain image LES m please click Display to display this form since it is set to Hide by default 3n0 Image size 3 On OF Mlshow Spots Manual ents of coordina LEVEL 4 u Gerebro Spinal Fluid L Cerebro Spinal Fluid C Cerebro Spinal Fluid Gray Matter CJ i Gray Matter 11 Gray Matter search spotll You can specify the area to be D searched by distance in radius from Radius for Search gt 2mm 410 wmm the specified coordinates enter a Add Search Conditions value in millimeters here Click this button to execute a search Free Keywords _ If you wish to add a search condition or a title to an PubMedIp item type please specify it in this form Notes Search with AND You can search matches with both Searching Conditions for Brain Coordinates and Searching Conditions for Item Type Search with OR You can search matches with either Search Conditions for Brain Coordinates or Search Conditions for Item Type 27 The following search result will be displayed by executing search v 0977 Manual entry of coordinates gt Update Click this tab to go back to the prior Brain Area H
40. te comma and enter in the box for Brain Domain Name Besides directly entering domains you can also add them by double clicking in the list box on the right Enter Cognition Function and Citation Source with one byte comma Please specify either MNI coordinate system or Talairach coordinate system to be entered for Type of Brain Coordinates Details Unknown is selected by default and Talairach Coordinate System is assumed for Brain Coordinate You can use either Brain Coordinates or Brain Coordinate list format when entering brain coordinates You can describe the coordinates for Brain Coordinate List Form by separating them with a one byte comma such as z Also you can designate multiple coordinates with one byte semi colon eg 1 2 3 4 5 6 7 8 9 1 2 3 4 5 6 7 8 9 Please click Add to add coordinates Also click Remove to remove the already added coordinates How to Use the Index When you want to newly register the base item at the same time as registering Brain Coordinates the Index you set for the registration of Brain Coordinates shall be applied to the registration of the base item However please Index Tree remember that the Index shall not be applied to open all close all the base item when you select an already existing wa item with your ID O v Private 12 LOFJAMAT 14 After entering all required item
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