TIES v5.0 Client User Manual
Contents
1. Then narrow your results by sea rch with those r Report Types r Section Types F Select Text to treat the search search report types WHERE ARE THE SECTIONS m y All Document Types Please select a report type to see its terms as text E _ Jo University of Pittsburgh e i Pathology You can select a report type by checking it in the Report Types tree on the left Age Gender Race 9 any value ranging between equal less greater Any Gender Tig at a F Female Gender White Male Gender _ Black or African American bt oknoarn pem Event Year 9 any value ranging between equal less greater Diagram View The Diagram View allows users to visually construct complex Boolean queries and temporal queries Query diagrams consist of boxes connected by arrows The boxes represent filters to the query and will cause reports to be filtered out The arrows indicate the order in which all of the filters are checked on any report Query results will be any reports that make it through all of the filters to the Filtered Reports placeholder Below is a picture of the Diagram View Ei Q TIES v5 0 1 Researcher Test Protocol 1 University of Pittsburgh Test Data Network File View Help CY New Query Qs Open Query Save Query illo Charts T My Case Sets Close Tab e Close All Tabs amp Switch Role Switch Study 9 My2. cccseccccssceceeseceeeecseneeceeeesseeenseeessaeensaees 15 Delete a Case Sey Or er eir ieee dl li de 15 Specily Tissue Requirements fetta So tetic laa viae es iaaiee ie ie Dole tiw late laee hate aie 15 PARTO TAM ias isiad 16 EXPOR Order enms sra A 16 SuUBmMican Ode a de 17 Options for Submitted Orders c0c ccsccsesecscsdecctenescenescencsceeesceeecsoseeheversccenesoueesteeeseueeeroes 17 cancelan Order a ee ce 17 Coniirm an Order fOr SNIP DING ssaxccaese ress aiii 17 Order Options for Honest Brokers c cccceeccceeeceeeeceseeseeeceeeeaueeseeecsueesaueeseesaeessueeseeessusenaass 18 Update Status for Orders and Order tems occcocccocccococonoconoconoconocononnncncncnnonononononanos 18 Add Commens to an OE a aa ated cn tate 20 AMM AO AFA CA Sa e areata 21 Adda MES US artistes irlandes 21 Eata MES USE ennn e de 22 Adaa SO No MO PP O e e PER EE RO O E hecesia die tet aes 22 HA A hae aie a a 22 RES PaSSWON rnein ecco Se soa haces miata E 22 Add a TES SUY aeee E EOE RE 22 Edita TES llana iS 23 Add an Mstitution to a Study src E 23 PICO NISC TO d UY rt ias 23 Edit the Study Type Data Only or Data TiSSUE occconnncccccccconcconcnnoncncononononnnnoncnnoncnonannnss 24 Approve ACCESS f r USOS ecos baii 24 Frequentiv ASKEG Questions id id 25 Ss a totem eee 25 What is the difference between text searching and concept searching When should use TESS SCAG VDES nat cn 25 When should I use
3. IEC information extraction TIES v5 0 Client User Manual TIES User Manual BVO NON oasis citer ree cde e sace Bie cee ceen hota aleme teen aheatae ieee pacer ates ectemaaeonet 3 Joer ROIC eerie a A eae aa eee eee eee A 3 O 4 A eE E E 5 Gread Quenes desain a setae atl late utente aceasta 5 PY DCS Ol Searching espro iria idos 5 Dashboard Wisin os ae 5 Diagram VW io as 8 SPECITY ING Ple Sastres ad 9 AO AP ee Cr Pa en ee ee eee ee 10 RO a See ROR EE ees eee ne eee eet er eee eee eee ee 10 e angen tott iad nce geenendeddeeedosveenaeesieut aaa 10 VIEWING Query Resulte sa AA 11 HIGORCA AS tarso 11 Chanong QUIN e o catan E 11 nn A Renner tenet orem anon Se enero ene mene trier ene eon a te ease 11 PIU AHA Osiris a cido sia n 11 Expor a REDON dt e E e et a o a e e nae 12 Request Report RevieW ccccccccceeccseeceeeceeecsecceecusecaeeceeceeesseeceeeeaesauesaueeageceeeseeeseeeseeeaaes 12 Quarantine REDO asia ia 12 Sala aL APPO AO EE aati to tance nencusenal eaa sageneaeea seca Sccat Jose se ate 12 Order FUNCIONS ui ide eae 14 Ordering Steps for Researchers Person Placing an Order occcoccccocnccccncocnccncncocncnnccnnnnonons 14 ordering TS SUS pesee ena e rane elec innit o 14 Create ai New GaSe Seu Orden a a e 14 Add an Item to an Existing Case Set cccccceececsececeeseeceeeeceueeseeeseseeseusessueesseeeesseseseas 15 Options tor Created Case Sei insta cid 15 Remove an Item from an Existing Case Set
4. ties upmc com To log into TIES LAUNCH TIES 1 Click the button on the TIES webpage 2 If a security popup window appears click the Run button Select the appropriate data network from the dropdown and click OK Note The Production Data Network provides access to real data The Test Data Network contains fake data and can be used to try out the system 4 Type in your username and password and click Login 5 Select what role you want to be logging in as from the dropdown menu 6 Select the appropriate study if logging in as a preliminary user researcher or honest broker and click OK Query Functions Creating Queries Querying allows TIES users to search for cases and reports that are relevant to their research interests To query reports the user must be logged in as a Preliminary User Researcher or Honest Broker There are two basic views for querying reports Dashboard and Diagram The Dashboard View is similar to Google or other search tools that you might use The Diagram View is more visual and allows for more complex queries In the Diagram View users create queries by adding filters and constructing a diagram Types of Searching When creating queries users can use two main types of searches Text searching only returns reports that contain EXACT matches to the search term Concept searching returns documents that contain the exact search term as well as documents containing synonyms of the
5. Account 2 Untitled_Query01 x ee o _query Results S Query Builder gt le Dashboard Filters No of Results Click to a filter them to 50 y your query REPORT TYPE All Reports Randomize results Start Search SEARCH TERM EVENT YEAR Filters panel for adding and deleting filters Search Term In all sections Double click to edit Temporal Queries Add a temporally related patient event Filtered Reports PATIENT EVENT Filters on the same path connected by arrows are AND filters all of these conditions must be met for reports to be returned Forks in the path indicate OR filters to the query Types of filters that can be added include Report type Search term NOT search term include reports that do not contain the search term 8 Event year Gender Age Race Filters are added to the diagram either using the Filters panel on the left hand side of the Diagram View or by right clicking one of the placeholders or existing filters To add filters using the Filters panel click the appropriate filter type button in the Filters panel This will add a filter box below whatever was selected in the Diagram with the exception of the Report Type filter which is always placed at the top of the Diagram Inserting or deleting filters by right clicking items in the diagram simply involves selecting the appropriate option when right clicking Optio
6. To open a previously saved query 10 1 Click the open Query button or select the Open Query option from the File menu 2 Click the name of the query you want to open from the dialog box that appears 3 Click Open You can also open queries saved by other users on the same study by selecting a different user from the drop down list at the top of the Open Query window Viewing Query Results After running a query results will be displayed in a separate tab The left hand side of the screen displays a tree list of all reports returned from the query Reports from the same institution are grouped together within the tree as well as all reports for the same patient if a patient has multiple reports they will be kept together To view a particular report click on the report in the tree list The report will then be displayed on the right hand side of the screen Highlighting Reports When a report is selected search terms or annotations can be highlighted Click the appropriate button in the De Identified Pathology Report area of the screen if you want items to be highlighted in the report Changing Query If after viewing query results you want to make changes to your query click the change query link at the top of the Results page to go back to the query view you used to construct the query You can also click on the Query tab located to the left of the Results tab at any time Report Options Once a report is in view
7. a number of options are available The report can be printed exported saved locally reviewed or quarantined The report can also be added to a case set order Ordering is explained in the next section Print a Report Individual reports resulting from queries can be printed To print a report 1 Select Print Report from the File menu or right click the report and select Print 2 Select what you would like to print from the popup window that appears 3 Click OK 11 4 Select the appropriate print settings and click OK Export a Report Reports can be saved to your local computer using the export option To export a report select Export Report from the File menu A popup window will appear Navigate to the location that you want the report saved to and type the name of the file you want the report saved as Click Export to save the report The report is saved as a text file Request Report Review If you come across a problematic report for example the report doesn t fit the search you conducted or concepts are not colored correctly in the annotations you can request that the report be reviewed by using the Request Review option Note that once a report is flagged for review it can only be un flagged by a System Administrator To request that a report be reviewed 1 Select Request Review from the File menu or right click the report and select Request Review 2 Explain why you are requesting a review in the comments
8. a query in the Diagram View Why can t see it in the Dashboard View If you create a query in the Diagram View that contains features not available in the Dashboard View such as temporal searching the query cannot be displayed in the Dashboard View 25
9. area 3 Click OK Quarantine Report lf you come across any reports that are not completely de identified as occurs in less than 2 of the reports available these reports must be quarantined so they are not available for searches Reports can only be un quarantined by a System Administrator To quarantine a report 1 Select Quarantine Report from the File menu or right click the report and select Quarantine 2 Confirm that you want to quarantine the report by clicking Yes Charts Tab Query results can be viewed by looking at individual reports or by looking at charts showing the distribution of reports Charts are the only information available to Preliminary Users To view a summary chart for a query 12 1 Click the i charts button or select Charts from the View menu This will open the Charts tab 2 Create a query in either the Dashboard or Diagram View 3 Select the type of chart to view by clicking the appropriate button The default chart type is bar chart 4 Select the type of filter to categorize query results by in the Categorize By drop down list y Start Search 5 Click i B Query results will be shown as a chart rather than individual results Note that for pie charts only one category type can be selected while subcategories are allowed when making bar charts Categories are the primary category while subcategories allow categories to be subdivided For example if you choose age as the pri
10. be continually updated as appropriate Add Comments to an Order There may be times where Honest Brokers want to add a comment concerning the status of an order item A common example of an Honest Broker comment is the reason why an order item cannot be fulfilled To add comments to an order 1 Select the particular order item to comment on from the New Orders pane in the Manage Orders tab 2 Click in the Honest Broker Comments textbox and enter the comments 3 Clickthe save button to save changes 20 Administrator Functions Administrators in TIES manage accounts and can create new users and protocols Upon logging in as an Administrator the Manage Accounts tab is available In this tab you can see users and studies in the system A screenshot of the Manage Accounts tab is shown below Q TIES v5 0 1 Administrator University of Pittsburgh Test Data Network Administrator View Help amp New User Y New Study 9 Close Tab amp Close All Tabs Switch Role 22 My Account Add a TIES User To add a new user Click the Es New User button or select New User from the File menu Enter a username for the user A temporary password is already provided Fill in user information fields as applicable Select the role to assign the user from the drop down list oS 21 5 Click OK The user will now be included in the Users list Edit a TIES User Once created TIES users can be modified Ro
11. the Diagram View for querying What benefits does it have over the DasnbOald VIEW e enone 25 created a query in the Diagram View Why can t see it in the Dashboard View 25 Introduction The Text Information Extraction System TIES is a web based application that lets researchers affiliated with University of Pittsburgh and University of Pittsburgh Medical Center search pathology reports and order tissue from the paraffin archive or frozen stores Honest broker services are also supported in TIES Pathology reports from MARS are imported into TIES ona weekly basis Some examples of potential TIES users include Attending physicians Fellows Department of Pathology Residents Translational researchers Oncologists Basic scientists Epidemiologists Molecular biologists Tissue Bank Personnel User Roles Four types of user roles are available in TIES each having access to different functions in TIES ot ee ee a Preliminary users have access to aggregate data only not individual reports Researchers can search de identified pathology reports and create case sets orders Honest brokers can search pathology reports and process orders Administrators perform administrative functions such as creating new users and studies and assigning user roles Users can be assigned multiple roles as appropriate for their work needs Logging In Logging into TIES can be done from the TIES webpage http
12. ane Update Status for Orders and Order Items The status of orders and individual order items should be updated by the honest broker as they go through steps Below is a table listing the different statuses available Order Order Item Salus Description Order Item Actual tissue was retrieved 18 Order Item Not Found Tissue could not be located Ia Item Order item was approved Dia Item Unusable Tissue was located but is not usable e g not enough left Order Item Processed New slides have been made and are ready for pickup shipping Order Item Distributed Tissue has been approved processed and picked up shipped Order Not Submitted Not sent to Honest Broker not visible in Honest Broker Queue A MN In Honest Broker Queue we a Honest Broker requested tissue to be retrieved ae Incomplete Not all of the order items were found or some were unusable ee All order items were retrieved Order Confirmed Researcher confirms the order after Honest Broker accepts ore rejects all order items All order items have been processed All order items have been picked up shipped To update the status of individual order items and orders 1 Select the particular order item or order to be updated from the appropriate orders pane New Orders In Process Orders etc in the Manage Orders tab 2 Select the appropriate status from the Status drop down list 3 Clickthe set button 19 The status of order items and orders should
13. ccess change simply left click 24 Frequently Asked Questions Query Functions What is the difference between text searching and concept searching When should use these search types Concept searching searches for the search term s you typed in as well as any synonyms of those terms Text searching only returns reports containing EXACTLY what you typed Concept searching generally returns more accurate results because different wordings may be used across reports Note that negation NOT searching is treated differently in concept and text searching In concept searches negation searching looks for reports saying things like No evidence of the search term is negated in the report In text searches negation searching returns reports not containing the search term anywhere in the report When should I use the Diagram View for querying What benefits does it have over the Dashboard View Querying in the Diagram View allows several features that the Dashboard View does not When using the Diagram View you can use concept searching AND text searching in the same query you can search for some search terms as concept searches and others as text searches Additionally the Diagram View allows temporal searching These features are not available in the Dashboard View In general the Diagram View allows for more complex queries All features available in the Dashboard View are also available in the Diagram View created
14. des b Shipping tissue to the PI or holding tissue for collection by the PI c Setting the order status to Distributed Each of these steps is explained in more detail below Steps for Researchers and Honest Brokers are described separately Ordering Steps for Researchers Person Placing an Order Ordering Tissue After running a query tissue can be ordered A new order can be created or tissue can be added to an existing order You must be in the query results tab to order tissue Create a New Case Set Order To create a new case set 1 Clickthe if New button in the My Case Sets area of the Results tab 2 Type in a name for the case set 3 Click OK 14 Add an Item to an Existing Case Set To add an item to an existing case set simply drag and drop the desired report to the appropriate case set in the My Case Sets area Alternatively you can right click the report select Add Report to and choose the appropriate case set Options for Created Case Sets Once a case set is created individual case set items or the entire case set can be deleted instructions to the honest broker can be specified items can be printed and exported and the order can be submitted All of these actions are performed in the My Case Sets tab The My Case Sets tab is organized as a tree similar to query results The main headings are case set names and individual items appear underneath each order Remove an Item from an Existing Case Set To re
15. er Once you have added all the items you wish to order to a particular order the order should be submitted so an Honest Broker can fill the order and update the status of order items Tissue orders may not be completely filled by the Honest Broker due to unavailability of some of the order items requested To submit an order 1 Select the order you want to submit from the Case Sets pane 2 Clickthe submit button located under Available Tasks 3 Click Yes to confirm that you want to submit the order After an order is submitted its status is changed to submitted The order will appear in the Submitted Orders pane Options for Submitted Orders Cancel an Order To cancel an order that has been submitted 1 Select the order you want to cancel from the Submitted Orders pane in the My Case Sets tab 2 Clickthe cancel button located under Available Tasks 3 Click Yes to confirm that you want to cancel the order Confirm an Order for Shipping Confirming an order for shipping is the second step in the two step process of ordering tissue The first step involves the Researcher submitting the order to the Honest Broker after which the Honest Broker updates the availability status of the items Tissue orders may not necessarily be 17 completely filled by the Honest Broker due to unavailability of some of the order items requested in the order If the order cannot be filled in its entirety the Researcher may or may not wa
16. ext Indicate for each Kkemove search term whether ALL enove A you want to search as 3 Search Results Lobular Carcinoma C020669 Lobular C0205417 Select concept s to search Concept or Text ypes Le All Sections 4 Pitt Pathology Sections _ Final Diagnosis _ Gross Description _ Microscopic Description _ 4 Part Information Report Text Cancel If you do not see the desired concept in the pop up window you can modify the search term by changing the term at the top of the pop up window and clicking the Find button Start Over In both the Dashboard and Diagram Views you can click the button at any time to clear the query After clicking the Start Over button a pop up window will appear asking if you are sure you want to start over with a blank query Click Yes to clear the query or click No or Cancel to go back to the current query Save a Query Queries created using either the Dashboard or Diagram view can be saved for later use To save a query 1 Click the Save Query button or choose either the Save Query or Save Query As option from the File menu A popup window will appear 2 Type the name you would like the query to be saved under in the Name field 3 If desired type a more detailed description of the query in the Description field 4 Click the Save button to save your query Open a Query
17. hecking it in the Report Types tree on the left Female Gender White Male Gender Black or African American lAcian Age Gender Race 9 any value ranging between equal less greater Any Gender a y Event Year any value ranging between equal less greater To query reports 1 Type any specific search terms you want reports to contain into the text box separating search terms with commas 2 Select the report type s you wish to search by clicking the appropriate checkboxes By default all report types available for the study you logged into will be searched 3 Select the sections you wish to search in by clicking the appropriate checkboxes If you do not select any sections to search the entire report will be searched NOTE you must select a document type first in order to select particular report sections Restrict age as desired by clicking the appropriate radio button and setting values Select the appropriate gender and race from the choices provided Restrict the event year as desired Select the number of reports desired from the drop down list on the right hand side of the screen If you want a random selection of reports check the Randomize results checkbox TD p e 8 Click Start Search Note that when a search term is matched to a concept the search term will turn blue and you can mouse over the search term to see what concept it matc
18. hed to Additional search options are available by clicking the Try Advanced Dashboard link These options include being able to use text searching rather than concept searching searching for any concepts listed equivalent to or searching and searching for concepts in the negated form equivalent to not searching A screenshot of the Advanced Dashboard is shown below r Q TIES v5 0 1 Researcher Test Protocol 1 University of Pittsburgh Test Data Network O x File View Help CY New Query Open Query Save Query Il Charts T My Case Sets Close Tab Close All Tabs Switch Role Switch Study 9 My Account 4 Untitled _QueryO1 x Query Results Query Builder gt 5 Dashboard Diagram A No of Results 50 z Go back to the pa All of these concepts Basic Dashboard _ Randomize results Any of these concepts Find reports with Additional search boxes let you All of these concepts in the negated form Tip Separate different concepts with a comma For e g perineual invasion metastasis S pecify Boo ea n O R a n d N OT logi C Search Mode 9 Concept Recommended Text Search using NCI Metathesaurus concepts Search using text Reports containing the exact Reports containing the concept and it s synonyms text are returned are returned Select Concept to map to NCI Metathesaurus concepts and
19. les can be added or modified set to expire or never expire contact information can be updated and user passwords can be reset Add a Role to a User Users can be assigned multiple roles To add a role to an existing user aS K Click on the Users pane in the Manage Accounts tab Select the name of the user you want to edit from the list of users Select the appropriate role from the drop down list and click Add Click Yes to confirm that you want to add the role Click the sawe button located under Available Tasks Edit User Information Contact information can be changed and roles previously assigned to users can be set to expire or not expire To edit user information or modify role assignments oe E Click on the Users pane in the Manage Accounts tab Select the name of the user you want to edit from the list of users Make changes to the user as applicable Click the save button located under Available Tasks after all changes have been made Reset Password To reset a user s password gt IA UN A 5 Click on the Users pane in the Manage Accounts tab Select the name of the user you want to edit from the list of users Click the button or select Reset Password from the File menu Click Yes to confirm that you want to reset the password A temporary password will automatically be generated Click Yes to send a notification email to the user Add a TIES Study New studies can be added to a
20. mary category and gender as the subcategory each age group will be subdivided into males and females Charts can be revised after they are created You can change the chart type and categories used in creating the chart Make the appropriate changes and click RAJ Siti Several options are available if you right click the chart including Copy Save As and Print 13 Order Functions Ordering tissue in TIES is a multi step process involving communication with the honest broker to confirm the order Orders can be created by Researchers or Honest Brokers Honest Brokers can fill orders and update order status The basic order procedure is as follows 1 An order is created by a Researcher or Honest Broker 2 The order is submitted and is added to an Honest Broker s queue 3 The Honest Broker verifies the order performing the following steps a Examining IRB approval b Verifying tissue availability c Updating the status of each order item 4 The Honest Broker requests confirmation from the Researcher after updating the status of all order items and setting the order status to either Retrieved or Incomplete depending on whether all requested items were available or not The order is then added to the Researcher s awaiting confirmation queue 5 The researcher confirms the order The order is added to the Honest Broker s confirmed queue 6 The Honest Broker fulfills the order by performing the following steps a Cutting tissue sli
21. move delete an item from a case set 1 Select the particular report you want to delete from the Case Sets pane 2 Clickthe Remove button under Available Tasks Delete a Case Set Order To delete an entire case set order Select the case set you want to delete from the Case Sets pane Click the Delete button under Available Tasks Click Yes in the Confirm Order Deletion popup window that appears Click Ok in the Order Deleted popup window that appears A AN es Specify Tissue Requirements Tissue requirements can be specified for individual items To insert instructions tissue requirements 1 Select the particular item you want to insert tissue requirements for 2 Under Available Tasks specify your requirements from the options provided and type in any additional instructions in the Additional Notes textbox 3 Clickthe save Changes button located under Available Tasks 15 Order instructions can also be modified by clicking the Specify Ordering Instructions textbox and making the desired changes to the instructions Be sure to click the Save button to save any changes made Requirements instructions can also be added after orders have been submitted Print Order Items Individual order items can be printed To print all items in a case set order Select the case set from the Case Sets pane Click the Print button located under Available Tasks Select the contents you wish to print by selecting the a
22. n organization by the administrator To add a new study 22 Click the New Study button or select New Study from the File menu Enter a title and abbreviated name for the study Select the type of study from the dropdown Options are Data Only or Data amp Tissue Enter the IRB approval number Set the expiration date for the study If the study does not expire click the Never Expires checkbox YS Select the report types allowed by clicking iihi and making the appropriate selections 7 Click OK The study will now be included in the Studies list Edit a TIES Study In general here are the steps to edit an existing study 1 Click on the Studies pane in the Manage Accounts tab 2 Select the name of the study you want to edit from the list of studies 3 Make the desired changes Some specific changes you may wish to make are adding an institution to a study adding a user to a study editing the type of study and approving access for users Add an Institution to a Study Some studies require access to data from other institutions To request access to another institution s data for a study Click on the Studies pane in the Manage Accounts tab Select the name of the study you want to edit from the list of studies Click the Y 14 button under Institution Memberships Select the institution from the dropdown list Select the type of access needed from the dropdown list Click OK Ste eS LS Access to an i
23. ns available when right clicking depend on what is clicked for example if you right click on the All Reports placeholder the only option available is to add an AND filter below the placeholder since the All Reports placeholder must always appear at the top of the diagram and cannot be deleted Then select the appropriate filter type from the dropdown and click OK Note that filters for Race and Tags can only be added by right clicking they do not appear in the Filters panel Specifying Filters In the Diagram View filters are specified in pop up windows that appear after inserting the filter In general these pop up windows function in the same manner as specifications made in the Dashboard View However specifying search terms requires additional steps For each search term added you need to specify whether you want it to be a concept search or text search by clicking the appropriate button If a concept search is performed a pop up window will appear where you type in the search term click Find and then choose from the list of concepts provided Select the concept that most closely matches what you intend to search for Note that you can select multiple concepts if desired This step is performed automatically in the Dashboard View r Search Term Filter Properties xs Search Terms Q Select Concepts Return documents that do not contain these terms lobular carcinoma mee terms added T Add T
24. nstitution s data can only be granted by that institution Add a User to a Study In addition to being assigned multiple roles users can also be assigned to multiple studies To add a user to a study 1 Click on the Studies pane in the Manage Accounts tab 23 oa 9 E 6 Select the name of the study you want to edit from the list of studies Click the 4 button under User Memberships Select the appropriate user from the dropdown Select the role the user should take for this study from the dropdown if the user has multiple role assignments Click OK Edit the Study Type Data Only or Data amp Tissue To edit the type of study 1 Click on the Studies pane in the Manage Accounts tab 2 Select the name of the study you want to edit from the list of studies 3 Select the appropriate option from the Type dropdown 4 Click the 5 button to save changes Approve Access for Users For cross institutional studies access to an institution s data can only be granted by that institution To grant or revoke access to your institution s data 1 2 3 Click on the Studies pane in the Manage Accounts tab Select the name of the study you want to edit from the list of studies Mouse over any data access requests that need to be modified When mousing over the status will display what it can change to For example requested access can be approved and approved access can be revoked To make the a
25. nt the order to be shipped Therefore before an order is shipped the Researcher must confirm shipment of the order To confirm an order for shipping 1 Select the order to confirm for shipping from the Submitted Orders pane in the My Case Sets tab 2 Clickthe confirm button located under Available Tasks 3 Click Yes to confirm that you want to confirm the order for shipping Note that after an order is submitted the Researcher may only add additional ordering instructions to the order items He she may not modify add or remove order items When the honest broker updates the status of all order items and requests confirmation from the Researcher the Researcher then has an option to modify the order and resubmit if he she is not happy with the order status To modify the order simply click the modify button located under Available Tasks At that point the order will be moved back to the Open Orders pane and items can be added and removed from the order Order Options for Honest Brokers Once an order is submitted Honest Brokers can update the status of orders in the Manage Orders tab To view the Manage Orders tab click the lf Manage Orders button or choose Manage Orders from the View menu In the Manage Orders tab all orders from a particular study are grouped together and individual order items are listed underneath each order Orders that are new to your queue and have not been viewed yet are listed under the New Orders P
26. ppropriate checkboxes If desired make revisions to the Page Setup by clicking the Page Setup button Click Print Select the appropriate print settings and click OK oh a a IS To print an individual case set item 1 View the item by expanding the case set and clicking the case set item in the Case Sets pane 2 Clickthe Print button located under Available Tasks 3 Select the appropriate print parameters in the popup window that appears 4 Select the appropriate print settings and click Ok Export Order Items Information about order items can be saved to your local computer using the export option The data is saved as a text file To export all items in a case set order Select the case set from the Case Sets pane Click the Export button located under Available Tasks Select the contents you wish to export by selecting the appropriate checkboxes Click the Export button Navigate to the location that you want the order items saved to and type the name of the file you want it saved as 6 Click Export to save the order items o e SY To export a single case set item 16 1 View the item by expanding the case set and clicking the case set item in the Case Sets pane 2 Clickthe Export button located under Available Tasks 3 Navigate to the location that you want the order items saved to and type the name of the file you want it saved as 4 Click Export to save the item Submit an Ord
27. search term Concept searching generally returns more accurate results In TIES concept searching is the default search type One difference between concept and text searching is how NOT negation searches are treated For text searches reports not containing the search term anywhere in the report will be returned In contrast for concept searches reports containing the search term in the negated form are returned such as No evidence of Dashboard View The Dashboard View is the default view for querying reports and is pictured below Q TIES v5 0 1 Researcher Test Protocol 1 University of Pittsburgh Test Data Network File View Help CY New Query Open Query Save Query illo Charts f My Case Sets 9 Close Tab amp Close All Tabs 2 Switch Role Switch Study 9 My Account Query Results Query Builder gt la Dashboard Diagram A Find reports with No of Results 50 v Want more options Try Advanced Dashboard Randomize results Tip Separate different concepts with a comma For e g perineual invasion metastasis Oo Start Search Start Over All of these concepts Then narrow your results by r Report Types r Section Types search report types WHERE ARE THE SECTIONS M All Document Types Je select a report type to see its 3 J University of Pittsburgh paar 4 Pathology You can select a report type by c
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