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1. EndNote X5 August 2011 Page COLUMNS ROWS AND PANELS THE ENDNOTE LIBRARY An EndNote Library is displayed as an multi column list each column equating to a field in your references each row equating to a complete reference The left hand pane the Groups Pane displays any Groups associated with that Library These are described elsewhere in this guide Hide the Groups Pane by selecting Groups Hide Groups from EndNote s menu bar 4 EndNote X5 X5_Test_0 enl BAE ax Maj File Edit References Groups Tools Window Help Q A S Annotated wes 00 4 O e amp om Faj s My Library 8 Author Year Title Journal Ref Type URL All References Unfiled W Trash SS My Groups Online Search Library of Con Library of Con LISTA EBSCO PubMed NLM U Portsmouth Web of Scienc more EndNote Web transfer amp Find Full Text SSsseses Preview Search PDF amp Quick Edit No References Selected Showing 0 of 0 references Hide Tab Pane Hide the Tab Pane at the bottom of the screen by clicking on the Hide Tab Pane button Suppressing the display of these two panes gives the whole window over to displaying the contents of the Library The list of references displayed in this window can be restricted to a subset of the entire Library by selecting from EndNote s menu bar either ReferencesSearch References and th
2. Journal Arti htto Awww ncbi nim 09 08 20 Suzuki T Q 20 LC MS MS analysis of diarrhetic shel Anal Sci Journal Arti httovwwesncbi nim 09 08 20 Suffredini E 20 Norovirus detection in shellfish using New Micro Journal Arti httpvwww ncbi nim 09 08 201 Scharer K 20 Occurrence of Vibrio spp in Fish an JFoodProt Journal Arti http www ncbi nim 09 08 20 Sant Anna 201 Highly toxic Microcystis aeruginosa s NeurotoxRes Journal Arti httpwww ncbi nim 09 08 201 Rodriguez R 20 Prevalence co occurrence and pred Clin Rheum Journal Arti htto Awwwenebi nim 09 08 201 Putignani L 2011 Investigation of Toxoplasma gondii p Exp Parasitol Journal Arti htto Mwwwencbi nim 09 08 20 Picot C Ng 2011 Relevant shellfish consumption data f Int J Enviro Journal Arti htto Awwwenebi nim 09 08 2011 Perez S Y 2011 Determination of toxicity equivalent f Chem Res Journal Arti htto wwwencbi nim 09 08 2011 a r hlinamia Ala AMAA limanbhili a kasim muafila in AM dhihin walla h ala anlan larim ml A hi btn ihsas bad mln ANAONA A gt Preview Search PDF amp Quick Edit Author v Contains and Year v contains BD and 9 Te E comans Ji cici QUICK SEARCH Click in the Quick Search box at the right hand side of the main toolbar and enter a search term Pressing the lt Return gt key will carry
3. CITE WHILE YOU WRITE WORD 2007 INTRODUCTION TRAVELLING LIBRARY WORD S ENDNOTE TAB CITATIONS GROUP BIBLIOGRAPHY GROUP TOOLS GROUP ENDNOTE S TOOLS MENU ENTERING CITATIONS IN AUTHOR DATE OR NUMBERED STYLES USING AN AUTHOR DATE STYLE E G HARVARD CITE WHILE YOU WRITE TOOLBAR IN ENDNOTE INSERTING A REFERENCE INTO A DOCUMENT USING A NUMBERED REFERENCING STYLE E G VANCOUVER FORMAT EDITING OR DELETING IN TEXT CITATIONS EDITING OR DELETING IN TEXT CITATIONS USING THE ENDNOTE X5 RIBBON__ EDITING OR DELETING IN TEXT CITATIONS BY RIGHT CLICKING USING ENDNOTE X5 AND WORD SENSIBLY SINGLE PART DOCUMENTS MULTI PART DOCUMENTS HOW DO MERGE MY DOCUMENTS INTO ONE TO GET A SINGLE DOCUMENT WITH A MERGED BIBLIOGRAPHY AT THE END MERGING MASTER DOCUMENT AND SUBDOCUMENTS UPDATING SUBDOCUMENTS WITHIN THE MASTER DOCUMENT NUMERICAL MISMATCH IN NUMERICAL REFERENCING STYLES TRAVELLING LIBRARIES UNIVERSITY OF PORTSMOUTH REFERENCING STYLES DEPARTMENTAL VARIATIONS LINKING ENDNOTE X5 TO ENDNOTE WEB GENERATING BIBLIOGRAPHIES FROM RICH TEXT FORMAT FILES CORRECTING UNMATCHED OR AMBIGUOUS CITATIONS CONVERTING OLDER ENDNOTE LIBRARIES TO X5 FORMAT OPENING AN OLD ENDNOTE LIBRARY USEFUL ENDNOTE WEBSITES PURCHASING ENDNOTE FOR YOUR PERSONAL USE ENDNOTE WEB APPENDIX COLLECTING REFERENCES FROM SELECTED BIBLIOGRAPHIC DATABASES IMPORTING REFERENCES FROM CAMBRI
4. IMPORTING REFERENCES FROM PUBMED Searched the PubMed database to get some references on screen Click in the checkbox next to each reference you would like to export to EndNote Click on the Send to link at the top of the results page o Select File from the list of destinations o Select Medline as the format o Click on the Create File button The File Download window will open Click on the Save button to open the Save As window In the Save As window select a memorable location for the file and then click on the Save button When the download is complete click on the Close button Click on the Import button on EndNote s toolbar to open the Import File window in which you must o Select the downloaded text file o Select the PubMed NLM Import Filter o Click on the Import button to import the references if successful a progress bar will show the progress of the import process Alternatively you can search PubMed from within EndNote which makes it easy to import references from this source Click on the Online Search button on EndNote s toolbar Select PubMed NLM from the drop down list and click on the Choose button to open the Search Pane at the bottom of the EndNote window Carry out your search of PubMed using the boxes and drop down lists to help focus your results Once the number of retrieved references is displayed click on the OK button to retrieve these into the currently open EndNote Library
5. Li Rongfeng Yu Huahua Feng Jinhua et al Source INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES Volume 49 Issue 1 Pages 14 19 DOI 10 1016 ijbiomac 2011 03 005 Published JUL 1 2011 Times Cited 0 from All Databases becate rare Show Refine View abstract At the head of your search results you will see a button marked EndNote Select the references that you want to export to EndNote by ticking in the check boxes adjacent to those references that you want to export Then having selected your set of exportable references click on the EndNote button A Processing Records screen will appear and you simply click on the Export button to export the marked references into EndNote WEB OF KNOWLEDGE piscovery starts HERE THOMSON REUTERS Sign In Marked List 0 My EndNote Web My ResearcherlD My Citation Alerts My Journal List My Saved Searches Log Out Help Processing Records Please wait while your request is processed Note Depending on the number of records this may take a few moments Product Web of Knowledge Selected action Export to Reference Software Processing 4 records 4 Done the Export process does not start automatically then click Export Back to Results When you are done exporting the file click Back to Results 2011 Thomson Reuters Acceptable Use Policy Please give us your feedback on using Web of Knowledge EndNote X5 August 2011 Page 1 1 IMPORTING
6. Page4 1 The above method is also used for deleting in text citations of any kind not just Author Year ones To do this open your Word document and click anywhere inside the citation that you want to delete Doing this highlights the whole citation From Word s EndNote Web ribbon select Edit Citation s This opens the pane shown above using which you can delete the highlighted citation by selecting Edit Reference Remove Citation and clicking on the OK button The highlighted in text citation and the corresponding entry will both be removed from the bibliography at the end of the document Deleting an in text citation and reference from a Word document doesn t remove the reference from EndNote EndNote X5 August 2011 Page4 2 EDITING OR DELETING IN TEXT CITATIONS BY RIGHT CLICKING You can also edit delete a reference by right clicking in the in text citation This opens up a panel on which the last option is Edit Citation s Select this option to display the same options as you get from the ribbon s Edit amp Manage Citation s function The Black Sea harbours vast quantities of hydrogen sulphide H2S a toxic gas which smells like rotten eggs This noxious gas could be used as a renewable source of hydrogen gas to fuela future carbon free economy according to Turkish researchers writing in a forthcoming issue of the nternational Journal of Nuclear Hydrogen Production and Applications The waters of the Black Sea contain v
7. The easiest way to copy references between two Libraries is to tile the Libraries so that their windows are displayed side by side This can be done by selecting Window Tile Vertically from EndNote s menu bar To copy a reference from one Library into another click on the reference to highlight it Then click on it again and drag and drop the reference into the other Library Suppress the display of Groups and hide the Tab Pane for each Library Remember that you are copying references not moving them from one Library to another You can select a group or block of references and drag and drop them in the same way To select a block of adjacent references highlight the first member of the block then hold down the lt Shift gt key when selecting the last member of the block To select non adjacent references you must hold down the lt Ctrl gt key as you click on each reference that you want to select You can now close each Library by clicking on the lower X button in the top right hand corner of the each Library s window 7 EndNote allows you to have a number of Libraries open concurrently EndNote X5 August 2011 paged 7 SEARCHING LIBRARIES There are two search functions Quick and Advanced which allow you to locate a specific reference or a group of references in an EndNote Library 43 EndNote X5 X5_Test Z Fie Edit References Groups Tools Window Help a a x Gt raed 7OQQOES CETME B Au
8. University of Portsmouth PORTSMOUTH Hants UNITED KINGDOM PO1 2UP This Monograph Barrow Andrew and Jeffery Lisa 2011 EndNote X5 Manual Portsmouth University Library Portsmouth Has been retrieved from the University of Portsmouth s Research Repository http eprints port ac uk To contact the Research Repository Manager email ir port ac uk DO ie University ibrary University of Portsmouth EndNote X5 A ENDNOTE dahan r paa brani ma Maask huama Andy Barrow and Lisa Jeffrey University Library University of Portsmouth PORTSMOUTH PO1 2ST 023 9284 3236 023 9284 3233 fax andy barrow port ac uk Updated January 2011 TABLE OF CONTENTS HOW CAN ENDNOTE X5 HELP ME HELP NEW TO USING ENDNOTE ENDNOTE USER MANUAL STARTING ENDNOTE CREATING A NEW ENDNOTE LIBRARY OPENING AN EXISTING ENDNOTE LIBRARY COLUMNS ROWS AND PANELS THE ENDNOTE LIBRARY THE TAB PANE ENDNOTE LIBRARIES ARE JUST FILES OOANDOAKRA SL POPULATING AN ENDNOTE LIBRARY EXPORTING REFERENCES INTO ENDNOTE EXAMPLE EXPORTING REFERENCES FROM WEB OF SCIENCE IMPORTING TEXT FILES INTO ENDNOTE EXAMPLE IMPORTING REFERENCES FROM PUBMED CREATING THE TEXT FILE OF REFERENCES TO IMPORT EFFICIENCY OF IMPORT FILTERS COLLECTING REFERENCES BY ONLINE SEARCHING WEB CACHING ACCESSING ELECTRONIC REOUSRCES FROM OFF CAMPUS ___ JOURNAL TITLES IN REFERENCES DO
9. B Author Year Title Journal Ref Type URL Last Updated ba zhang D H 201 Zebrafish neurotoxicity from aphanto Environ Tox Journal Arti http www ncbi nim 09 08 201 Nang eee 201 Distribution of marine red yeasts in Microb ourmal Arti f m 09 08 201 tand S Ea 204 i nim 09 08 201 Wormer L 201 inim 09 08 2011 F Wong C K 201 i G My EndNote inim 09 08 201 Watanabe 201 E Chrionex Data i nim 09 08 201 Wang Z H 201 x5_Test Data inim 09 08 201 Wang S L 201 My Recent C 5_Test_0 Data i nim 09 08 201 Villegas R 201 Documents inim 09 08 2011 van den Top 2011 B i nim 09 08 201 Turner A D 201 inim 09 08 201 These A KI 20 Desktop i nim 09 08 20 Suzuki T Q 201 i nim 09 08 201 Suffredini E 201 K i nim 09 08 20 Scharer K 20 Cy i nim 09 08 20 Sant Anna 20 iy pcuments inim 09 08 20 Rodriguez R 20 i nim 09 08 20 Putignani L 20 8 i nim 09 08 20 Picot C Ng 201 Mi Computer inim 09 08 201 Perez S V 201 i nim 09 08 201 Nincevic Gla 20 inim 09 08 20 Mitra A Ch 20 Fionan X5_Test inim 09 08 201 Mitra A Ba 20 My Network Save as type Text File txt i nim 09 08 20 Mihali T K 20 see nim 09 08 20 Mesquita J 20 APSS nim 09 08 20 Ma H J Fu 20 inim 09 08 20 Liu R Lian 20 ONTO SALES LESTER parm ncbi nim 09 08 20 Eiana C Piss 201 Assessing and manaqing
10. Before you can import references from Google Scholar you need to have set your Google Scholar preferences to enable this Click on the Scholar Preferences link to the right of the Google Scholar search box Scroll down to the bottom and look for the Bibliography Manager option Click on the drop down arrow next to Show links to import citations into and select EndNote Click on the Save Preferences button at the bottom of the screen to save your preferences temporarily Your preferences will remain set for the duration of your search session but if you logout of Google Scholar you will need to reset them And so to searching Search the Google Scholar database to get some search results on screen Under each result there will be an Import into EndNote link Click on this link underneath the journal article you want to export You can only export one reference at a time from Google Scholar into EndNote The File Download window will open Click on the Save button to open the Save As window In the Save As window select a memorable location for the file and then click on the Save button If you want to save more than one reference from Google Scholar make sure you change the name from the default filename scholar to something else If you do not do this the new download will overwrite the previous one each time you save a reference When the download is complete click on the Close button Click on the Import button on EndNote s toolbar to open th
11. Selected Select the boxes to determine whether an entire field is to be used as a soc heading or whether a field should be split into multiple headings When ticked the List each author separately option will list each author name as a separate heading If not checked all authors from a single field will appear as a single heading When ticked the In other fields list each entry that is separated by slash carriage return or line feed option separates any non o author field into multiple headings rem oaeen Terms in the lt Keywords gt field are always listed as separate headings When you have selected your fields click on the OK button to display the terms found in the fields you selected see below Subject Terms Subject Bibliography My EndNote Library enl Ed You must now select those terms you Output style apa sth E ETT wish to include as subject headings To quickly select or clear all the terms use the Select All or Clear Agab W A 1 Selection s buttons You can also Senok A C Ismaeel A Y Al Qashar F A amp Agab W A 2009 Pattern of upper respiratory click on individual terms to select or ee i antibiotic prescribing practices in Bahrain Meg Princ Pract deselect them Once you have selected your terms click on the OK button to display the subject Pe rack ecien ari hkata anb peet bia Prac tkes N Barah tel ASE rate bibliography on screen in the Subject 183 170 174 Bibliog
12. You do not have to retrieve all the references you have found by altering the values in the Retrieve records from and through boxes you can select the number of records you want to retrieve IMPORTING REFERENCES FROM SAGE JOURNALS ONLINE Search the Sage Journals Online database to get some references on screen Click in the checkbox next to each reference you would like to export to EndNote Click on the Add to My Marked Citations button on the screen s right hand side Click next to Email Download Save Print My Marked Citations on the right and click on the GO button Select Citation Only or Citation Abstract as the format Click on the EXPORT DOWNLOAD to Citation Manager button The File Download window will open Click on the Save button to open the Save As window In the Save As window select a memorable location for the file and then click on the Save button When the download is complete click on the Close button Click on the Import button on EndNote s toolbar to open the Import File window in which you must o Select the downloaded text file o Select the EndNote Import Import Filter o Click on the Import button to import the references if successful a progress bar will show the progress of the import process EndNote X5 August 2011 Page 5 8 IMPORTING REFERENCES FROM SCIENCEDIRECT Search the ScienceDirect database to get some references on screen Click on the box to the left of each ar
13. A NUMBERED REFERENCING STYLE E G VANCOUVER FORMAT In a numbered referencing style e g Vancouver Format references are indicated by a number in the text often superscripted At the end of the paper references are given in full arranged in order of the number that they have been assigned in the preceding text Using the example that we have already formatted we now change the bibliographic style from APA 5 style to Vancouver Format The need to change a citation style could well arise if having had your paper rejected by a journal which uses an author date style you decided to submit the article to a different journal one requiring a numeric referencing system as many do Changing bibliographic styles is very easy to do From the Style drop down list found on the Bibliography group on Word s EndNoteX5 ribbon select Vancouver EndNote will automatically reformat your document with the new style Our example text now looks like this The Black Death is categorized into three specific types of plague bubonic plague infection of the lymph nodes or buboes pneumonic plague infection of the lungs and septicaemic plague infection of the blood the most deadly of the three Scientists and historians at the beginning of the 20th century assumed that the Black Death was an outbreak of the same diseases caused by the bacterium Yersinia pestis and spread by fleas with the help of animals like the black rat Rattus rattus Once infected by
14. Alfani 2010 0 2 Traveling Library Edit Reference Iv ht a supporta Arrizabalaga 2006 mber okschos i arrizabalaca 2006 02 Traveling Library travelled Adams Elliot Algar amp Brazell 2008 _ i bly carried b Adams 2008 15 1 Traveling Library Edit Reference v mercha 3 The Blaq ngthe world s p 00 This has Edit Citation Reference avals which h 5 Formatting Default Nj until it leq Prefix Suffix Pages Arrizaba the History Gy Totals 3 Citation Groups 3 Citations 2 References Page 1of1 Words 256 as Q Click on the Edit Reference drop down adjacent to the reference you want to edit to get a list of operations that you can carry out chief of which are Remove Citation and Insert Citation If you wish to add a prefix to the in text citation use the Prefix field to hold the text and or if you wish to add a suffix to the in text citation use the Suffix field to hold the text If you wish to add page numbers to your in text citation put these in the Pages field Tick the Exclude author checkbox if you wish to omit the author from the in text citation because the author s name occurs immediately before the in text citation or tick the Exclude year checkbox if you need to exclude the year from the in text citation Once you have edited the in text citation click on the OK button The in text citation will then be replaced with the edited version EndNote X5 August 2011
15. EndNote comes with a vast user manual supplied as a PDF file and installed on the University network You will need Adobe s Acrobat Reader to read it but any University computer should have this reader already installed on it Should you want to install a copy of this reader on your own computer a copy of the latest version of the reader can be downloaded free of charge from http Awww adobe com EndNote X5 August 2011 Page 5 STARTING ENDNOTE Start EndNote by clicking on the Windows task bar s Start button and selecting General Applications EndNote X5 EndNote Program from the resulting menu The first time that you run EndNote you will see an EndNote Web panel which is concerned with setting up an account on EndNote Web Click on the Cancel button to dismiss this window are we are not considering EndNote Web in this guide EndNote Web a simplified version of EndNote is described in a separate guide copies of which are available from the Library guides page htto www port ac uk library guides CREATING A NEW ENDNOTE LIBRARY 43 EndNote X5 New Reference Library File Edit References Groups Tools Window Help Save in My EndNote x Ofen fc My Recent Documents e My Documents My Computer Print Setup File name my EndNote Library Ctrl Q My Network Save as type EndNote Library enl Create a new EndNote Library by selecting File New from EndNote s men
16. Yersinia pestis it is estimated that victims would die within 60 180 days However this view has recently been questioned by some scientists and historians and some researchers believe that the illness was in fact a viral hemorrhagic fever based on epidemiological interpretation of historical records of the spread of disease 1 1 Altschuler EL Kariuki YM Did the 1918 flu virus cause the Black Death Med Hypotheses 2008 Dec 71 6 986 7 EndNote X5 August 2011 Page4 0 EDITING OR DELETING IN TEXT CITATIONS EDITING OR DELETING IN TEXT CITATIONS USING THE ENDNOTE X5 RIBBON Occasionally in an Author Year citation style e g Harvard Format APA Style you may need to edit a citation perhaps to omit the author from an in text citation or to include additional information in the in text citation e g page numbers for a book reference You can edit the existing citation as follows Open your Word document and click anywhere inside the citation that you want to edit This will highlight the whole citation On Word s EndNote X5 ribbon click on Edit amp Manage Citation s Doing this will open the EndNote X5 Edit amp Manage Citations Citation window using which you can edit the highlighted citation ANL 9 OG ua a Home Insert Page Layout References Mailings Review View Add Ins EndNote X5 EndNote X5 Edit amp Manage Citations The Blaq citation Count Library i 10 a 1 peaking Feri 2010 have beg
17. phase Elston Re emergence of Vibrio tubiashii in bivalve shellfish aquaculture severity environmental drivers geographic exte Paz Tdantifiratinn nf 19 enienkaraic acid a nem diarrhetic chellfich nnicaninn tavin hw liniid chramatnnranhie mith mas Y Reference Type Journal Article a 14 Sim T S Teo T Sim T F 1985 A note on the screening of dried shrimps shrimp paste and raw groundnut kernels for aflatoxin producing Aspergillus flavus J Appl Bacteriol Yolume number 59 Issue month or quarter 1 First Page 29 34 ha Inset v Cancel Help Library X5_Test enl 194 items in list We enter the topic in the search box in this case we are searching for articles about cats and click on the Find button Once the search is complete EndNote displays all the reference s matching our search word We highlight the first reference the one that we want to insert into the Word document and click on the Insert button to insert the chosen reference into our document EndNote will instantly format the citation in the text and produce a list of references at the end of the document in the APA 5 style Our document now looks like the example shown on the next page If it irritates you turn off Instant Formatting using the Preferences button on Word s EndNote ribbon If you turn off Instant Formatting then you will need to manually format your bibliography by clicking on Bibliography Format Bibliography on W
18. template will establish a common layout for page margins line spacing and font sizes styles for headings sub headings paragraph body bulleted indented or footnoted text Sometimes a piece of academic work requires a bibliography at the end of each chapter rather than single bibliography at the end and sometimes it may need both Since EndNote puts the bibliography at the end of a document to achieve multiple bibliographies requires multiple documents Building multiple documents into a single final document is relatively easy using Word s Master and subdocuments functions You can create the document s separate chapters as separate Word documents combining them all into a master document Again it would make sense to name your subdocuments sensibly e g MSc_Chapter1 MSc_Chapter2 etc with the Master document being called something like MSc_Thesis_ Master EndNote X5 August 2011 Page4 4 HOW DO I MERGE MY DOCUMENTS INTO ONE TO GET A SINGLE DOCUMENT WITH A MERGED BIBLIOGRAPHY AT THE END To merge the separate chapters of your document together you must create a master document to hold them all This can be either a new Word file or a document containing the very first pages of the multi part document Once you have a master document you can insert all your separate chapter documents into this master document as subdocuments Do this in the correct order e g Contents Introduction Chapter 1 and so on Prior to doing th
19. that same style Gather references from remote bibliographic databases You can search remote bibliographic databases and then import or export references from these databases into EndNote This may involve saving the retrieved references as a text file and then reading that text file into EndNote via an Import Filter but increasingly more direct forms of reference gathering are becoming available Sadly what you cannot do is import references from word processed documents EndNote can only import structured data and the references in such documents possess insufficient structure for EndNote to be able to make sense of them Getting references from a Word document into EndNote can be done but it may have to be achieved by cutting and pasting Build bibliographies EndNote can insert citations into a word processed document and then process them to compile the document s bibliography EndNote integrates with Word by adding a toolbar to all versions of Word from Word 97 Word 2003 and by adding a ribbon to Word 2007 both the toolbar and ribbon controlling a feature called Cite While You Write In addition to producing bibliographies linked to word processed documents you can also produce free standing bibliographies e g a reading list or a list of your publications You can also produce subject bibliographies bibliographies in which the entries are arranged by subject headings keywords or authors EndNote for the Mac integrat
20. that will be used to create the subject bibliography If no references are selected all the references in the Library will be used for the subject bibliography Subject Fields say Select ToolsSubject Bibliography from EndNote s menu bar to display Selected Fields l the Subject Fields window listing Reference Type a faato EndNote fields by their default field Year Title names see below Secondary Author Secondary Title Place Published Publisher volume Number of Volumes Number Pages Section Tertiary Author Tertiary Title Edition v List each author separately ogr other fields list each entry that is separated by slash carriage cma return or line feed Keywords entries are always listed separately Page 2 EndNote X5 August 2011 Highlight the field s whose contents you wish to use as subject headings A common selection is the lt Author gt field which will create a subject bibliography based on the references authors If you build the list of headings from ea more than one field the subject pal headings generated from these fields are combined into a single combined list If you mix date fields with other fields dates will sort before alphabetic subject headings Subject Terms To quickly select all fields or clear all fields use the Select All or Clear Selection s buttons You can also click on individual fields to select or ae deselect them 22 Term s
21. the results of the first two items with the third search line Those results are combined with the fourth search line to produce the final search results 8 Invented as an abstract concept by the British mathematician and philosopher George Boole 1815 1864 Taken up by the American engineer Claude Shannon 1916 2001 and applied to the design of electrical and electronic circuits EndNote X5 August 2011 Page dD 9 SORTING AN ENDNOTE LIBRARY INTRODUCTION The Sort Library function provides a way of arranging the references in an EndNote Library for browsing exporting printing or copying Libraries are typically sorted by the first author s last name and first initial year and record number When you add a new reference or modify an existing reference EndNote automatically files it in this order Use the Sort Library function to change this order The new sort order will remain in effect until you change it again CHANGING THE SORT ORDER OF AN ENDNOTE LIBRARY To change the sort order of an EndNote Library click in the reference list Next select Tools Sort Library Sort Options Use the Following controls to choose up to 5 fields as criteria For custom sorting Sort Fst by this Select one or more field names from the lists in the sort Year x options pane Enter the field names in the order you Then by this want the references sorted You do not have to use all Author five options Then by this i Re
22. using Cite While You Write CITE WHILE YOU WRITE TOOLBAR IN ENDNOTE A Fie Edit References Groups Window Help ox Q A S Harvard format A Search Library Ctrl F E g ts Faj S F Author Year Cite While You Write CWYW Return to Word Processor ALT 1 Ref Type URL Last Updated 2009 Online Search Insert Selected Citation s ALT 2 Journa Arti http ZAaaw ncbi nim 15 08 20 2009 Format Paper Format Bibliography ALT 3 Journal Arti http Awww ncbi nim 15 08 20 Abouabdellah 2008 _ Change and Move Fields Import Traveling Library ALT 8 Joumal Arti http www nebi nim 15 08 20 Abraham 2008 EndNote Web tit Preferences ALT 9 Journal Arti httpzwww ncbi nim 15 08 20 Aligizaki 2008 Open Term Lists 5 jntaminati Toxicon Journal Arti http aww ncbi nim 15 08 20 Amiard 2008 Define Term Lists c4 iland non Food Che Journal Arti htto Awwwenebi nim 15 08 20 Link Term Lists ctrl 3 MEE e O Journal Arti http wewnebi nim 15 08 2011 Amiail 2007 Sanita jofpecte Mar Drugs Journal Arti http wwwenebi nim 15 08 20 Amail 2008 Sort Library and yess Toxicon Journal Arti httov Awwwenebi nim 15 08 20 Apeti 2010 Recover Library coastalc Mar Pollut Journal Arti hittp Awww ncbi nim 15 08 20 Apeti 2010 coastal c Mar Pollut Journal Arti http www nebi nim 15 08 20 Arnold 2009 __Lbrary Summary f sensitivit Environ Tox Journal Ar
23. 39 50 connection to that database Once connection has been established with the remote database host the Search Pane opens at the bottom of the screen showing the host to which you are connected The search options that are presented here will vary with the database to which EndNote is connected Below is the search pane displayed when searching PubMed Preview Online Search PubMed MEDLINE at PubMed NLM PDF amp Quick Edit Search Remote Library v m Title M Contains chironex fleckeri b UI And Year Contains aij b B And Title Contains v Pj L J v Showing 0 of 0 references in Group All References 266 Hide Tab Pane Enter your keywords into the search boxes provided When you have finished specifying your search strategy execute it by clicking on the Search button Once you have clicked on the Search button the search is passed to the Found 70 records PubMed search engine converted into a Retrieve records from 1 through 70 form that the PubMed search engine understands and is then executed Next the Confirm Online Search panel appears displaying the number of references that your search has retrieved Click on the OK button to retrieve them if necessary altering the number you want to retrieve by entering different numbers in the Retrieve records from and through boxes Confirm Online Search JOURNAL TITLES IN REFERENCES D
24. DGE SCIENTIFIC ABSTRACTS DATABASES IMPORTING REFERENCES FROM COPAC IMPORTING REFERENCES FROM EBSCO DATABASES IMPORTING REFERENCES FROM EMERALD IMPORTING REFERENCES FROM ENGINEERING VILLAGE IMPORTING REFERENCES FROM GOOGLE SCHOLAR 41 EndNote X5 August 2011 paged IMPORTING REFERENCES FROM JSTOR 57 IMPORTING REFERENCES FROM THE UNIVERSITY LIBRARY CATALOGUE 57 IMPORTING REFERENCES FROM MYILIBRARY 57 IMPORTING REFERENCES FROM PUBMED 58 IMPORTING REFERENCES FROM SAGE JOURNALS ONLINE 58 IMPORTING REFERENCES FROM SCIENCEDIRECT 59 IMPORTING REFERENCES FROM SCIRUS 59 IMPORTING REFERENCES FROM THE WEB OF SCIENCE 59 IMPORTING REFERENCES FROM WILEY INTERSCIENCE 59 IMPORTING REFERENCES FROM ZETOC 60 EndNote X5 August 2011 Pages HOW CAN ENDNOTE X5 HELP ME EndNote X5 allows you to Store and manage references to journal articles books book chapters conference papers newspaper articles websites etc References are stored in Libraries each capable of holding an unlimited number of references Any type of file JPEG images figures Word documents Excel spreadsheets PDF files can be attached to a reference and in EndNote X5 these attachments can be searched along with the references Any reference can be inserted into a word processed document as an in text citation in your preferred style the in text citations subsequently being formatted into a bibliography in
25. FilesOpenOpen Library from EndNote s menu bar Locate and highlight the old Library then click on the Open button to open it If the Library was created with EndNote 7 or earlier you must give permission for the conversion to be carried out by clicking on the OK button Name the new Library and click on the Save button Conversion is carried out safely a copy of the old Library is converted to the new format with the original Library being left unchanged EndNote X5 August 2011 Page 5 1 USEFUL ENDNOTE WEBSITES University of Queensland Cybrary EndNote homepage Here you can find extra Import Filters Connection Files and Output Styles answers to frequently asked questions journal term lists for the biomedical sciences and a tutorial on writing Output Styles All very useful The website s URL is http www library ug edu au endnote EndNote Developer s homepage Here you can find updates and patches for the EndNote software extra Import Filters Connection Files and Output Styles etc The website s URL is http www endnote com UK EndNote homepage Here you can find updates and patches for EndNote extra Import Filters Connection Files and Output Styles and you can join an EndNote discussion list The website s URL is http Awww endnote co uk EndNote X5 August 2011 Page 5 2 PURCHASING ENDNOTE FOR YOUR PERSONAL USE Our EndNote site licence only allows EndNote to be installed on University owned computer
26. Iran Southeast Asian J Trop Med Public Health 34 Suppl 2 15 19 Conway D J 2007 Molecular epidemiology of malaria Clin Microbiol Rev 20 1 188 204 PRODUCING A SUBJECT BIBLIOGRAPHY EndNote can also produce subject bibliographies Where a simple bibliography is a continuous listing of citations in a particular order a subject bibliography is made up of smaller listings each appearing under distinct headings e g keywords or authors A subject bibliography can be based on any EndNote field or combination of fields not just on those fields that contain subject content Subject bibliographies have a variety of uses generating lists of journal abstracts current awareness lists subject indexes lists of Library holdings by category Typical subject bibliography headings are Keyword Author or Journal Title You can print entire bibliographic citations information from one or more fields record IDs or even nothing at all under each heading SELECTING THE REFERENCES FOR A SUBJECT BIBLIOGRAPHY Open the Library that you want to use and highlight the references you wish to include in a subject bibliography You can use the search function to find a subset of references from the Library and then select Files Select All from EndNote s menu bar to highlight that subset for your subject bibliography If you select individual references select the ReferencesShow Selected References function to view a list containing only those references
27. NG THE REFERENCE Save a reference by closing the reference creation window A keyboard shortcut for saving a reference is to press the key combination lt Ctrl W gt Do this twice and you will close the reference and the Library EndNote X5 August 2011 Page 1 8 ENTERING PERSONAL AUTHORS A correctly formatted bibliography depends upon you having entered the data correctly in the first place So here are four important points to remember when entering data into a reference Enter authors and editors names on separate lines Failure to observe this rule is one of the main causes of references failing to format properly when creating a bibliography Enter ALL the authors or editors for a particular reference entering each one on a separate line If required EndNote will truncate the list of authors with et al or and others as is required by the bibliographic style If you do not know all of the authors names the last author should be et al or and others and yes that final comma must be there Enter authors and editors names correctly An author or editor s personal name can be entered either with the surname followed by a comma a space and the first name s Smith John or with the first name followed by the surname John Smith Both are acceptable to EndNote but if you have the Suggest terms as you type feature turned on EndNote will suggest author names based on the assumption that their names are being ent
28. OF SCIENCE Search the Web of Science database to get some references on screen Tick the checkbox next to each reference that you would like to export to EndNote Click on the Save to EndNote button located at the top and bottom of each page of search results A window will open offering EndNote as a destination for the references Select EndNote and the selected references will be transferred into the currently open EndNote Library and displayed on screen Alternatively you can search Web of Knowledge from within EndNote Click on the Online Search button on EndNote s toolbar Select Web of Knowledge TS from the drop down list Click on the Choose button to open the Search Pane at the bottom of the EndNote window Do your search using the search boxes and drop down lists to help focus your results Once the number of retrieved references is displayed click on the OK button to retrieve these into the currently open EndNote Library You do not have to retrieve all the EndNote X5 August 2011 Page 5 9 references you have found by altering the values in the Retrieve records from and through boxes you can select the number of records you want to retrieve IMPORTING REFERENCES FROM WILEY INTERSCIENCE Having searched Wiley InterScience you should have some references on screen Click in the checkbox next to each reference you would like to export to EndNote Click on the Download Selected Citations button
29. OWNLOADED FROM PUBMED Journal references downloaded from the PubMed database will have abbreviated journal titles so if you use any citation style other than Vancouver Format which is the format developed for PubMed you will need to expand these abbreviated journal titles to their full form in the reference s lt Journal gt field And you will also need to keep the abbreviated form of the journal title in the lt Alternate Journal gt field of each reference so that you can at some future date use Vancouver Format which requires abbreviated journal titles WHERE DO THE RETRIEVED REFERENCES GO search of a remote database you have two choices as to where the retrieved references go You can put them into a temporary Library in which case they will need be moved to another Library either new or existing if you want to save them or you can have them put into the currently open Library These options are controlled by the buttons at the top left hand side of the EndNote window Click on the left hand button to retrieve the references into the currently open Library click on the right hand button to retrieve them into a temporary un named Library The advantage of doing this is that you can review the references in the temporary Library before moving them to a more permanent home If you retrieve the references into the currently open Library make sure if you have created more than one EndNote Library that it s the right one for the refer
30. RTING REFERENCES FROM EBSCO DATABASES Search your chosen EBSCO database to get some search results on screen Underneath each reference you will see an Add to folder link Click on this link for each reference you would like to export to EndNote On the right hand side under the legend Folder has items you will see a link to Folder View Click on the Folder View link Select the references you want to export by ticking each box or by selecting all the references Click on the Export icon at the right hand side of the list of results Click in the radio button next to Direct Export to EndNote ProCite CITAVI or Reference Manager You may tick the Remove these items from folder after saving checkbox if you wish Click on the Save button to export the selected references into the currently open EndNote Library IMPORTING REFERENCES FROM EMERALD Search the Emerald database to get some search results on screen Select the references you would like to export to EndNote by clicking on checkbox to the left of each reference Click on the Go button next to Add to the marked list Session Click on the Marked lists link on the left hand menu Click on the Export options link Click on the Export to EndNote Reference Manager link The File Download window will open Click on the Save button to open the Save As window In the Save As window select a memorable location for the file and then click on the Save but
31. TEXT FILES INTO ENDNOTE Importing references that have been downloaded during a search of a remote database is a quick way of building an EndNote Library but downloaded references need to be passed through an Import Filter to get them into EndNote To import a file of downloaded references the file must be in plain text and split up into labelled fields but you don t need to worry about doing this yourself as the database will do this for you during downloading Import Filters are specific to particular bibliographic databases If a database is marketed by more than one vendor separate filters are usually required for each version of the database EXAMPLE IMPORTING REFERENCES FROM PUBMED Al EndNote X5 X5_Test File Edit References Groups Tools Window Help Q G Annotated SES 00 Ole g 2 Ea j Sy b 8 Author Year Title Journal Ref Type URL Let s assume that you have downloaded a file of references from a search of PubMed Central and that this file of references has been placed on your desktop as a file pubmed results txt Import File Import File pubmed_results txt Import Option PubMed Central NLM Duplicates Import All Text Translation No Translation Click on the Import button on the EndNote s toolbar see above Doing so will open the Import File window shown above Click on the Choose button and locate the text file of references that you have downloaded Once you have se
32. The Style drop down list allows you to select an Output Style e edimentary Geology g to re format your document according to the rules of the Update Citations and Bibliography C l selected style The style showing here is that used by the D Convert Citations and Bibliography Eibwo graphy journal Sedimentary Geology The Update Citations and Bibliography command reformats your document according to the rules of the Output Style showing in the Style drop down list The formatting process replaces the temporary citations in your paper with formatted citations and builds the bibliography at the end of the document This command also updates your figure and table citations plus the formatted figures and tables found within the body of the document or in a list at the end of the document A number of functions are available from the Convert Citations and Bibliography drop down list The Convert Citations and Bibliography Convert to Unformatted Citations command either unformats a selected citation before editing or unformats the whole document This removes style formatting for the selected citations leaving temporary citations which usually consist of the author s last name the year and the EndNote Library record number surrounded by delimiters If you unformat the in text citations you must use the Update Citations and Bibliography command see above to format the paper again The Convert Citations and Bibliography Conver
33. WNLOADED FROM PUBMED WHERE DO THE RETRIEVED REFERENCES GO IMPORTING REFERENCES FROM PDFS CREATING REFERENCES MANUALLY SAVING THE REFERENCE ENTERING PERSONAL AUTHORS CORPORATE AUTHORS TAKE CARE CASE OF JOURNAL AND BOOK TITLES ABBREVIATED JOURNAL TITLES IN VANCOUVER FORMAT EDITING REFERENCES IN AN ENDNOTE LIBRARY SHOWING OR HIDING EMPTY FIELDS DURING EDITING SPELL CHECKING REFERENCES DELETING REFERENCES FROM AN ENDNOTE LIBRARY DELETING REFERENCES DETECTING DUPLICATED REFERENCES DELETING DUPLICATED REFERENCES REFERENCES CONSIDERED TO BE DUPLICATES GROUPING REFERENCES IN AN ENDNOTE LIBRARY WORKING WITH GROUPS DISPLAYING OR HIDING GROUPS SOME IMPORTANT POINTS ABOUT GROUPS CREATING A GROUP ADDING REFERENCES TO A GROUP DELETING REFERENCES FROM A GROUP DELETING A GROUP RENAMING A GROUP SEARCHING GROUPS TEMPORARY GROUPS COPYING REFERENCES BETWEEN LIBRARIES SEARCHING LIBRARIES QUICK SEARCH ADVANCED SEARCH CUSTOMISING THE SEARCH FUNCTION EndNote X5 August 2011 Page 1 USING BOOLEAN LOGIC IN SEARCHES SORTING AN ENDNOTE LIBRARY INTRODUCTION CHANGING THE SORT ORDER OF AN ENDNOTE LIBRARY PRODUCING SIMPLE BIBLIOGRAPHIES WHAT IS AN OUTPUT STYLE PRODUCING A READING LIST VIEWING THE READING LIST PRODUCING A SUBJECT BIBLIOGRAPHY SELECTING THE REFERENCES FOR A SUBJECT BIBLIOGRAPHY
34. abstract indexing Text only and click on the Save button The File Download window will open Click on the Save button to open the Save As window In the Save As window select a memorable location for the file and then click on the Save button When the download is complete click on the Close button Click on the Import button on EndNote s toolbar to open the Import File window in which you must o Select the downloaded text file o Select the appropriate CSA Import Filter o Click on the Import button to import the references if successful a progress bar will show the progress of the import process IMPORTING REFERENCES FROM COPAC COPAC is the combined book catalogue of the major research libraries in the United Kingdom You can search COPAC from within EndNote which makes it easy to import book references from this database Click on the Online Search button on EndNote s toolbar Select COPAC from the drop down list Click on the Choose button to open the Search pane Search COPAC using the boxes and drop down lists to help focus your results Once the number of retrieved references is displayed click on the OK button to retrieve these into the currently open EndNote Library You do not have to retrieve all the references you have found by altering the values in the Retrieve records from and through boxes you can select the number of records you want to retrieve EndNote X5 August 2011 Page 5 4 IMPO
35. ally updated Finally format the EndNote X5 August 2011 Page4 5 master document s bibliography and save the resulting document You will now have an up to date bibliography at the end of each chapter with an up to date cumulative bibliography at the end of the document NUMERICAL MISMATCH IN NUMERICAL REFERENCING STYLES EndNote X4 Format Bibliography b If you are using a numerical referencing style e g Vancouver Format there wil be a Format Bibliography YoU Instant Formatting mismatch between the numbers used in the Eont individual chapters each of which will be ui u numbered afresh beginning with 1 and the Bibliography title i final cumulative bibliography This problem can be solved by setting the start number of the second and subsequent chapter bibliographies using the Layout option on the Format Bibliography pane which you can get access to via the Bibliography group on ET Word 2007 s EndNote X5 tab Set the value Hanging indent 1 270cm Space after None in the Start with bibliography number box to the number of the last item in the previous chapter 1 i e if the last item in Chapter 10 was numbered 213 start the bibliography for Chapter 11 with 214 Start with bibliography number 1 First line indent 0 000 cm Line spacing Single Page4 6 EndNote X5 August 2011 TRAVELLING LIBRARIES Although a Word document associated with an EndNote Library loo
36. ard Format APA Style The Black Death The Black Death is categorized into three specific types of plague bubonic plague infection of the lymph nodes or buboes pneumonic plague infection of the lungs and septicaemic plague infection of the blood the most deadly of the three Scientists and historians at the beginning of the 20th century assumed that the Black Death was an outbreak of the same diseases caused by the bacterium Yersinia pestis and spread by fleas with the help of animals like the black rat Rattus rattus Once infected by Yersinia pestis it is estimated that victims EndNote X5 August 2011 Page 8 would die within 60 180 days However this view has recently been questioned by some scientists and historians and some researchers believe that the illness was in fact a viral hemorrhagic fever based on epidemiological interpretation of historical records of the spread of disease To insert a reference at the end of the last sentence of the document place the cursor there and insert a space before the full stop From Word s EndNote X5 ribbon select Citations Insert Citation Find Citation This opens a search window for searching the open Library We think of the reference which we wish to cite from the Library EndNote X5 Find amp Insert My References cat Author mg 4 note on the screening of dried shrimps shrimp paste and raw groundnut kernels for aflatoxin producing Asperc Da
37. at the bottom of the screen Select EndNote from the Format drop down list Select Citation or Abstract and Citation from the Export Type drop down list Select the appropriate file type e g PC from the File Type drop down list Click on the Go button The File Download window will open Click on the Save button to open the Save As window In the Save As window select a memorable location for the file and then click on the Save button When the download is complete click on the Close button Click on the Import button on EndNote s toolbar to open the Import File window in which you must o Select the downloaded text file o Select the EndNote Import Import Filter o Click on the Import button to import the references if successful a progress bar will show the progress of the import process IMPORTING REFERENCES FROM ZETOC Search the Zetoc database to get some references on screen Click in the box next to each reference that you would like to export to EndNote Click on the Download button at the top of the screen Select Short Labels from the Format drop down list Select Just tagged records from the Download drop down list Click on the Send file button The File Download window will open Click on the Save button to open the Save As window In the Save As window select a memorable location for the file and then click on the Save button When the download is complete click on the Close button Cli
38. c toxin profile in Mytilus gallo Molecules Journal Arti htto Aww r Mitra A Ch 201 Concentrations of some heavy metal Environ Mo Journal Arti htto Awwrr Mitra A Ba 201 Trace elements in edible shellfish sp Ecotoxicol Journal Arti http Awwiwr Mihali T K 201 A putative gene cluster from aLyngb PLoS One Journal Arti htto wwnrr Mesquita J 201 Norovirus hepatitis A virus and enter Food Micro Journal Arti htto wwwr Ma H J Fu 20 Differentiation of fecal Escherichia c Curr Microb Journal Arti http Janw Liu R Lian 20 First report on the detection of pecte Toxicon Journal Arti htto Awwiwr Liang CPi cs 20 Assessing and managing the health r J Hazard M Journal Arti http www Li A Ma F 20 Dynamic adsorption of diarrhetic she J Chromato Journal Arti htto Awww r Lemiere G 20 A general synthetic approach to the a Chem Com Journal Arti http sAanana r Huang H H 201 Study of cytoskeletal changes induce Environ Tox Journal Arti http anw r a Hindar Cl aN Tavin marina micrasalaan and challfie Enviran Ha laurnal Arti httrShaaaaae r Showing 266 of 266 references Show Tab Pane DISPLAYING OR HIDING GROUPS The left pane of the Library window lists the Groups in the current Library The first Group listed All References is always available This displays all of the references in the Library Custom Groups Groups that yo
39. ce moving the other duplicate into the Trash Group Click on the Skip button to leave both references in the Library They will appear in a temporary Duplicate References group so you can review them later Click on the Cancel button to stop the operation All the references will appear in the temporary Duplicate References group if you wish to review them Before clicking on Keep This Record which will delete the duplicate do check the record number to be sure that you are not deleting a reference already cited in a paper EndNote X5 August 2011 Page dD 2 REFERENCES CONSIDERED TO BE DUPLICATES References are considered to be duplicates if they have the same reference type Such as Journal Article or Book and the lt Author gt lt Year gt and lt Title gt fields are identical Sometimes references that have been flagged as duplicates aren t completely identical e g one may have richer information than the other containing say the full journal title in the lt Journal gt field rather than an abbreviated one Seeing the duplicates side by side enables you to compare the data so that the richer duplicate can be saved and other can be discarded References from PubMed have less rich data than references from other versions of Medline i e the journal title is held in abbreviated form EndNote X5 August 2011 paged 3 GROUPING REFERENCES IN AN ENDNOTE LIBRARY Using Groups you can break a Library int
40. ck on the Import button on EndNote s toolbar to open the Import File window in which you must o Select the downloaded text file o Select the zetoc MIMAS Import Filter o Click on the Import button to import the references if successful a progress bar will show the progress of the import process EndNote X5 August 2011 PageO 0
41. cord Number Click the button to the right of each field to indicate Then by this ascending or descending sort order None Then by this An With the field names entered as desired click on the None OK button Sort Language The Sort Options dialogue is initially set to sort the Engish Library by author names in alphabetical order and then references published by the same author are sorted by year from oldest to newest Page gt 0 EndNote X5 August 2011 PRODUCING SIMPLE BIBLIOGRAPHIES Bibliographies can be produced from any Library by passing the references through an appropriate Output Style WHAT IS AN OUTPUT STYLE An Output Style converts the references in a Library into formatted references formatted according to one of the many bibliographical styles used by journal publishers or specified in style manuals e g The Chicago Manual of Style 3 700 styles are supplied with EndNote but if the style you need doesn t exist EndNote allows you to create your own or edit an existing one Not easy to do We will now look at using EndNote to produce a simple bibliography To begin we will consider how to use a Library to generate a reading list a list of references for a colleague or perhaps a list of your own publications for your curriculum vitae PRODUCING A READING LIST 4 EndNote X5 Ie GG Havard format APA style aE D g ts Edl 4 ey
42. d selected ones directly into EndNote by a process called direct_export The bibliographic database will detect your EndNote software and will export the references into the open Library and if no Library is open you will be asked to select one as a target for the exported references With some databases Google Scholar ScienceDirect Web of Science this works very well but with others references may not transfer completely accurately In such cases it may be better to download the records and use an Import Filter see page 10 to import them or even search the database directly from within EndNote using a Connection File if a suitable one exists EXAMPLE EXPORTING REFERENCES FROM WEB OF SCIENCE Access the Web of Science databases at http wok mimas ac uk authenticating your access if necessary Enter your search terms into the Web of Science search screen and click on the Search button to execute the search The search results will be displayed as shown below lt we k web of Knowledge v 5 3 All Databases Results a 9X a i Page Gf Tools Results 231 Page of24 Go gt Pl Sort by Publication Date newest to oldest v l a ty 0 amp E Saveto EndN tOWeb EndN t ResearcherID more options ill Create Citation Report 1 Title Two step purification and in vitro characterization of a hemolysin from the venom of jellyfish Cyanea nozakii Kishinouye Author s
43. d by importing references that have been captured in the form of a text file from a search of a bibliographic database Search the database using its native search interface Then having selected a set of references download these onto your computer as a text file If a suitable Import Filter exists EndNote may then be persuaded to read the text file and take in the references A large number of Import Filters are provided with EndNote out of the box Connecting to online databases You can use EndNote as the search interface to a number of bibliographic databases e g PubMed Web of Knowledge and Portsmouth University s Library Catalogue Databases that require users to authenticate access are not searchable Such searches are often called Z39 50 searches as they use a search protocol called Z39 50 Importing references from PDFs EndNote can now scan and extract reference metadata descriptive information from PDF files either singly or in batches Manually entering references If you have just a few references to enter into EndNote typing them in is probably the best way to get them into it Tedious and time consuming but sometimes the only way Unfortunately EndNote cannot read the bibliography in a Word document and automatically generate EndNote references from it EndNote X5 August 2011 Page 1 0 EXPORTING REFERENCES INTO ENDNOTE Many bibliographic databases now allow you to search for references and then sen
44. e Choose button to open the Search Pane at the bottom of the EndNote window Carry out your search of the Library Catalogue using the boxes and drop down lists to focus your search Once the number of retrieved references is displayed click on the OK button to retrieve these into the currently open EndNote Library You do not have to retrieve all the references you have found by altering the values in the Retrieve records from and through boxes you can select the number of records you want to retrieve IMPORTING REFERENCES FROM MYILIBRARY Please note that only the author title year and place of publication are imported not the page numbers or place of publication required for Harvard Format APA Style Open the book that you would like to export into EndNote and click on the EndNote link in the top right hand corner of the reader screen The File Download window will open Click on the Save button to open the Save As window In the Save As window select a memorable location for the file and then click on the Save button When the download is complete click on the Close button Click on the Import button on EndNote s toolbar to open the Import File window in which you must o Select the downloaded text file o Select the EndNote Import Import Filter o Click on the Import button to import the references if successful a progress bar will show the progress of the import process EndNote X5 August 2011 Page 5 7
45. e Import File window in which you must o Select the downloaded text file o Select the EndNote Import Import Filter o Click on the Import button to import the references if successful a progress bar will show the progress of the import process EndNote X5 August 2011 Page 5 6 IMPORTING REFERENCES FROM JSTOR Search the JSTOR database to get some search results on screen Click in the check box by the side of each article you want to export At the top of the search results screen you will see an Export Citation link Click on the Export Citation link and select RIS file The File Download window will open Click on the Save button to open the Save As window In the Save As window select a memorable location for the file and then click on the Save button When the download is complete click on the Close button Click on the Import button on EndNote s toolbar to open the Import File window in which you must o Select the downloaded text file o Select the JSTOR Import Filter o Click on the Import button to import the references if successful a progress bar will show the progress of the import process IMPORTING REFERENCES FROM THE UNIVERSITY LIBRARY CATALOGUE You can search our Library Catalogue from within EndNote which makes it easy to import book references from this source Click on the Online Search button on EndNote s toolbar Select U Portsmouth from the drop down list and click on th
46. e Library directly into a Group in another open Library The references are copied into the second Library and into the target Group within it Remember that Groups are virtual They are collections of pointers rather than collections of references CREATING A GROUP There are two ways of creating a new Group Selected references can be added to a new Group or an empty Group can be created and the references added to it Create a new Group in either of these ways From EndNote s menu bar select ReferencesGroupsCreate New Group Right click in the Groups Pane of the Library window to display a contextual menu and select some references in the reference list then select References Add References toNew Group Enter a Group name between 1 and 255 characters in length ADDING REFERENCES TO A GROUP You can add references to a Group at any time without worrying about putting the same reference in a Group more than once because EndNote does not allow duplication of references within a Group To add references to a Group select the references you want to add to the Group in any of the following ways Click on an individual reference to select it Display a list of references such as a set of search results then choose Edit Select All from EndNote s menu bar Hold down the lt Shift gt key and click on two references to select a range of adjacent references Hold down the lt Ctrl gt key and click on a number of individual references to
47. ecking open the reference s you wish to check select wW ToolsSpell Check from EndNote s menu bar Other ways of invoking the spellchecker are to click on EndNote s toolbar s Spell Check button or press the key combination lt Ctrl Y gt Any of these actions will open the spellchecker window If the spell checker finds a suspect word the error is displayed in the spell checker pane which is just like the spell checker in a word processor You can access the spell checker s options and dictionaries by clicking on the appropriate buttons at the bottom of the pane Page dD 1 EndNote X5 August 2011 DELETING REFERENCES FROM AN ENDNOTE LIBRARY DELETING REFERENCES To delete references from a Library highlight them in the Library window then select References Move Reference s to Trash from EndNote s menu bar The reference s you have selected will be moved to the Trash Group where they will remain until this Group is emptied A keyboard shortcut for deleting highlighted references is to use the key combination lt Ctrl D gt Select multiple references for deletion by holding down the lt Ctrl gt key when clicking on references in the Library window Select a block of references for deletion by clicking on the first member of the block and then when you click on the last member of the block holding down the lt Shift gt key All the references in that block will be highlighted simultaneously Once you move a reference t
48. en carrying out a search of the Library or ReferencesShow Selected References The Library may also be sorted by clicking the column headers or by selecting ReferencesSort References from EndNote s menu bar 4 In database terms each reference in a Library is a record and each element of a reference Author Title etc is a field So in the Library Window each row is a record and each column is a list of the contents of a particular field in the records on display 5 If you wish to you can alter the fields that the Library Window displays EndNote X5 August 2011 Page THE TAB PANE Once upon a time the Tab Pane had just a single function to display a formatted preview of any reference highlighted in the displayed Library In EndNote X5 this pane now has three functions Preview Search and PDF amp Quick Edit The Tab Pane can as did the Preview Pane display a formatted reference or it can be used to prepare a search either an online search of a remote database or a search of the open EndNote Library or it can be used to edit the highlighted reference and now in X5 any attached PDF file Click on the Show Tab Pane button to open the Tab Pane Once open the button s name changes to Hide Tab Pane and you must click on it to close the pane The three screen shots below show the pane in each of its X5 modes Preview Search and PDF amp Quick Edit Preview Search PDF amp Quick Edit Zhang D C Hu e
49. ences e They go where you want them to go When you are carrying out a EndNote X5 August 2011 Page 1 5 you are about to retrieve It s not a disaster if you import the references into the wrong Library as you can easily move references between Libraries but you will save yourself time if you have the right Library open to receive the references at the outset EndNote X5 August 2011 Page 1 6 IMPORTING REFERENCES FROM PDFS Search a full text database e g Import Folder ScienceDirect which allows you to eee InsienaNote xa Pors e save the full text of your references as PDFs and EndNote can read these include files in subfolders PDFs scanning and automatically l extracting the bibliographic metadata Import Option author article title journal title etc Duplicates Import All from the PDF without you having to type this metadata into EndNote Hurrah Select File Import Folder from EndNote s menu bar and in the Import Folder window select the source folder containing your downloaded PDF files Click on the Import button and EndNote will bring in the bibliographic metadata and the PDF placing each in a new Journal Article reference type with a link to the full text PDF Import Cancel EndNote X5 August 2011 Page 1 7 CREATING REFERENCES MANUALLY To painfully create a new EndNote reference manually select Reference New Reference from EndNote s me
50. ered surname first This being so think it s best to best enter them in that order surname first Enter given names in full EndNote can abbreviate first and middle names so you should enter whole first and middle names if you know what these are If you are entering initials instead of full names be sure to type a full stop or a space between initials e g Fisher J O Fisher J O or J O Fisher But NOT Fisher JO because EndNote interprets unseparated initials as a forename Jo URLS You can use the reference s lt URL gt field to link to an electronic version of the document either on the World Wide Web use the Web page s full URL including the initial htto or on your own computer use the full pathname of the document CORPORATE AUTHORS TAKE CARE If you are entering a corporate author an author who is an organisation rather than an individual you must follow the name of the corporate author with a terminal comma e g National Health Service otherwise the last element of the corporate author will be interpreted as a personal author s name followed by a long list of forenames i e entering National Health Service minus the final comma generates the unlikely author Service National Health CASE OF JOURNAL AND BOOK TITLES When entering data manually use sentence case for book titles e g This is a sentence in sentence case You should not use title case e g This is a Sentence in Title Case for book tit
51. ery little oxygen As such the rare forms of life that live in the depths of the inland sea so called extremophile bacteria survive by metabolising sulphates in the sea water Sulphates fulfil a similar b Aria u A a Av Fin respiration for these microbes allowing them to release the ene B 7 A i grow from the nutrients they absorb from the water Mahar amp Escoh r 1998 4 Mahar P amp Escobar E 1996 Visual dBase 5 5 gt dianapolis IN Sams Pub Poste O Update Field Edit Field Toggle Field Codes Eont al gt Paragraph Bullets gt Numbering gt Edit Citation s gt EndNote X5 August 2011 Page4 3 USING ENDNOTE X5 AND WORD SENSIBLY It s all very well being able to link EndNote X5 references to Word documents via the Cite While You Write function but you must still use both pieces of software sensibly otherwise your files will end up in a mess Annoying if you are working on an essay rather more frightening if you are writing your doctoral thesis SINGLE PART DOCUMENTS If you are creating a single document in Word maybe an essay or an article for submission to an academic journal give both the Word document and the EndNote Library meaningful names e g if you were writing an article on climate change for the Journal of Meteorology you ought to use J_Meteorology_Climate_Change as the name for both the document and the associated EndNote Library Go
52. es with Word for the Mac Pages and OpenOffice HELP This guide covers the basic skills needed to use EndNote effectively but it cannot cover everything you will ever need to know EndNote s built in help system is well helpful This can be accessed by clicking on the button on EndNote s toolbar or by selecting Help from EndNote s menu bar NEW TO USING ENDNOTE If you are contact Information Service s IT Training team ittraining port ac uk 023 9284 3706 and they will arrange training for you If you are a user who is experiencing problems running EndNote then you should initially contact the Information Services Help Desk 1 EndNote X5 is a trademark of Thomson Reuters No longer completely true Word 2007 can maintain an internal database of bibliographic references linked to a document and it has a function for converting these internally held references into an EndNote Library EndNote X5 August 2011 Page4 servicedesk port ac uk Ext 7777 They may well be able to help you as report known bugs and fixes to them or they may refer you to me If you are not from the Faculty of Science and you are familiar with using EndNote but are having difficulty getting data into EndNote from a particular bibliographic database then you should initially seek help from your Faculty Librarian who will almost certainly be more familiar with the bibliographic database in question than I ENDNOTE USER MANUAL
53. fect For this reason it may be best to import references into a temporary Library leaving them there until they can be checked against the text file of downloaded references After checking they can then be transferred to a permanent home EndNote X5 August 2011 Page 1 3 COLLECTING REFERENCES BY ONLINE SEARCHING At the present time because of the move from Athens authentication to Shibboleth authentication it is not possible to carry out an online search of most remote bibliographic databases from within EndNote The only databases which are exceptions to this are PubMed which can be searched via EndNote from both on campus and off campus and the Web of Knowledge Citation Indexes which can be searched via EndNote from on campus only WEB CACHING ACCESSING ELECTRONIC REOUSRCES FROM OFF CAMPUS If you are off campus you can access the Web of Knowledge Citation Indexes by Web caching your computer so that EndNote can access these databases from anywhere Web caching is a simple procedure which makes your computer wherever it is look as if it on the University of Portsmouth campus Instructions for setting up Web caching can be found at http www port ac uk library helpyourself gettingstarted webproxy The procedure for setting this is simple and requires only basic IT skills but it is slightly different for different Web browsers Instructions for customising the major Windows and Mac Web browsers can be found on the abo
54. ic Group in the following way Click on the Group name in the Groups Pane to display the Group s references in the Library window Next open the Tab Pane and select the Search tab Note that your search will be restricted to the selected Group Carry out your search and the retrieved references will appear in the Library window placed in an automatically created Group Search Results For more detail about searching a Group refer to the section of this guide entitled Searching EndNote Libraries TEMPORARY GROUPS Two Groups exist only while their Library is open Closing the Library will delete these Groups The first is Search Results which holds the results of the last search performed on that Library Each time you execute another search the contents of this Group are overwritten with the new search results The second one is the EndNote Web Group which contains references transferred into the desktop Library from EndNote Web Each time you bring in new references from EndNote Web this Group is replaced with the new set of references Both these Groups Search Results EndNote Web are deleted when you close the Library or EndNote so you may want to save one or both of them to a Custom Group so that the pointers to their references are available to you during subsequent EndNote sessions EndNote X5 August 2011 Page dD 6 COPYING REFERENCES BETWEEN LIBRARIES To copy references from one Library to another open both Libraries together
55. ion of shellfish wastes a Biodegrad Journal Arti http www y i Z vilegas R 20 Fish shellfish and long chain n 3 fatt Am J Clin N Journal Arti http sAananw r Library of Con 0 van den Top 201 Surface plasmon resonance biosens AnalChem Journal Arti http Awwwv r LISTA EBSCO 0 Turner A D 201 Comparison of AOAC 2005 06 LC o Anal Bioan Journal Arti http www PubMed NLM 0 These A KI 201 Results of a European interlaboratory Anal Bioan Journal Arti htto Awwnr Suzuki T Q 201 LC MS MS analysis of diarrhetic shel Anal Sci Journal Arti http ZAa r U Portsmouth 0 Suffredini E 201 orovirus detection in shellfish using New Micro Journal Arti httovAwww r Web of Scienc 0 Scharer K 20 Occurrence of Vibrio spp in Fish an JFood Prot Journal Arti http Awwwr more Sant Anna 20 Highly toxic Microcystis aeruginosa s Neurotox Res Journal Arti http anaw r Rodriguez R 20 Prevalence co occurrence and pred Clin Rheum Journal Arti http www EndNote Web Putignani L 20 nvestigation of Toxoplasma gondii p Exp Parasitol Journal Arti htto www r transfer Picot C Ng 20 Relevant shellfish consumption data f Int J Enviro Journal Arti http Awww r Perez S V 201 Determination of toxicity equivalent f ChemRes Journal Arti http www Find Full Text Nincevic Gla 201 Lipophili
56. is you should unformat the citations in the separate chapter documents otherwise you may end up with mini bibliographies located at the end of each chapter when you compile your subdocuments into the single master document The command to unformat citations can be found on the Bibliography group of Word s EndNote X5 tab Convert Citations and Bibliography Convert to Unformatted Citations This will convert the in text citations to a temporary form surrounded by delimiters usually and also remove the bibliography from the end of the document Once the various chapters subdocuments have been arranged into a single master document the bibliography can be regenerated using the Update Citations and Bibliography command found on the Bibliography group of Word s EndNote X5 tab MERGING MASTER DOCUMENT AND SUBDOCUMENTS Create a new folder location in which to save your master document and the documents for each chapter that you will be merging into it the subdocuments Then save copies of each of the chapter documents into this new folder Then create your master document the document into which you will insert all of the other documents It can be either a new blank document using the same Word template that you used for the subdocuments or the document for the first page of your thesis i e the title page Save the master document to the same folder as the subdocuments cu Home Insert Page Layout References Mailings Review EndNo
57. ks normal it is not The Word document contains invisible field codes which include most of the data from the Library relating to the references which you have cited This invisibly stored data is called the Travelling Library Useful if you are collaborating with colleagues who also use EndNote and who are also using a version of Word compatible with EndNote s Cite While You Write function since you can send them your formatted Word document and they can add text and references to it from their own EndNote Libraries They can then reformat the completed document because all the data relating to your references are stored in the document s Travelling Library EndNote X5 fj You may on occasion need to remove A somien eane ee a document s Travelling Library If you new document will appear in a new unsaved document window The original file will remain opened and untouched wish to submi t your paper for publication in a learned journal you will need to remove the Travelling Library field codes as these could interfere with the typesetting software used by the publisher To remove a document s field codes in Word 2007 select Convert Citations and Bibliography Convert to Plain Text from the Bibliography group on Word s EndNote X5 ribbon You will see a warning panel explaining that this will preserve your original document with the embedded field codes and create a new unsaved document lacking these codes Click on the panel s OK but
58. lected the file click on the Open button and you will be returned to the Import File window Using the Import Option drop down list select the appropriate Import Filter e g the PubMed Central NLM filter In the Duplicates box select Import All n the Text Translation box leave the default option No Translation in place The window should now look something like the one above Now click on the Import button to import the downloaded references into EndNote If the import process is working correctly a progress bar will be displayed in the middle of the screen After the import process has finished only the references which you have just imported will be visible in the Library window to see all the references in a Library select References Show All References from EndNote s menu bar EndNote X5 August 2011 Page 1 2 CREATING THE TEXT FILE OF REFERENCES TO IMPORT How do you produce an importable text file of downloaded references All bibliographic databases allow to you print email and save the references that you have found Using the database s Save option it might be called something other than this you should be able to save a selection or all of the references that your search has retrieved This data will be saved as a text file and it is this text file that must be located using the File search box above so that it can be imported into EndNote EFFICIENCY OF IMPORT FILTERS No Import Filter is per
59. les Title case looks deeply unappealing although do use a modified form of title case for the titles of journals e g Journal of Invertebrate Zoology Accessed by selecting Edit Preferences Term Lists from EndNote s menu bar EndNote X5 August 2011 Page 1 9 ABBREVIATED JOURNAL TITLES IN VANCOUVER FORMAT Vancouver Format the referencing style used by the School of Pharmacy and Biomedical Sciences requires journal titles to be abbreviated so you will need to enter the abbreviated journal title in the lt Alternate Journal gt field of the reference Local policy dictates that if the journal title can be found in an abbreviated form in Medline then you should use that form e g the British Medical Journal was cited in Medline as Br Med J up to the end of 1987 but as BMJ from the beginning of 1988 onwards If there are different abbreviated titles like this always cite the correct abbreviated title for the article s year of publication If you cannot find the abbreviated title in Medline then give the title in full rather than attempting to create your own abbreviation If you are using Vancouver Format it s a good idea to enter the journal s unabbreviated name in the lt Journal gt field just in case you need to format your references in another citation style one that requires full journal titles EndNote X5 August 2011 Page dD 0 EDITING REFERENCES IN AN ENDNOTE LIBRARY In the Library window double click
60. ne are the days when your computer s operating system applied severe limitations to filenames A filename can now include almost any character you like with a few exceptions and can be up to 64 characters long It s much easier to link a document to the associated EndNote Library if each has the same name Useful when working with single part documents more important in the case of multi part documents MULTI PART DOCUMENTS An essay or a journal article will most probably be just a single part Word document and when its bibliography is generated using Cite While You Write the bibliography will appear at the end of the document A more substantial piece of academic work may well be made up of a number of individual chapters each a separate Word document It makes sense to name these chapters sensibly e g MSc_Chapter1 MSc_Chapter2 and to adopt the same name for the EndNote Library associated with each chapter Although EndNote X5 allows you to create groups for the references in any Library when you search that Library even if you just have one particular group on display it is the whole Library that is searched not just the visible group A case perhaps for putting the references for each chapter into a separate EndNote Library rather than putting them all into a single one To help you manage a multi part document it is helpful to first create a Word template for all the documents master document and subdocuments This
61. nfirm the location and file name to save the newly formatted document If your newly formatted file does not contain spacing between the last line of the original document and the bibliography this must be added manually after formatting This error only occurs with certain word processors CORRECTING UNMATCHED OR AMBIGUOUS CITATIONS To correct unmatched citations open the original Rich Text Format document Locate the unmatched citation s and correct the author s last name or year for each unmatched citation so that it matches the appropriate reference s in your EndNote Library To correct ambiguous citations open the original Rich Text Format document Locate the ambiguous citation s and add information from any other field after the year such as title e g Barrow 2011 Learning to Use EndNote for each ambiguous citation EndNote X5 August 2011 Page 5 0 CONVERTING OLDER ENDNOTE LIBRARIES TO X5 FORMAT EndNote 8 9 X X1 X2 X3 and X4 Libraries are all compatible with EndNote X5 You can open any of these Libraries without any conversion being required Furthermore EndNote X5 will automatically convert Libraries created with earlier versions of EndNote Versions 5 6 and 7 to Version X5 format and in most cases the same process will work for Libraries created with Version 4 or earlier OPENING AN OLD ENDNOTE LIBRARY You open an old Library in just the same way that you would open an EndNote X5 Library by selecting
62. nu bar or by clicking on the New Reference button on EndNote s toolbar 43 EndNote X5 New Reference E File Edit References Groups Tools Window Help 8 x AN Reference Type Journal Article v W w Sulg b S Plain Font v Ponsee w B I UIP A A Z Author e Thubron Colin Thesiger Wilfred Birch John Year 2009 Title The golden age of Arabian exploration Series Editor Series Title City London Publisher Royal Asiatic Society Volume Number of Volumes Series Volume Number of Pages Pages lt EndNote can store the details of many types of bibliographic materials Click on the arrow to the right of the Reference Type box to open up a drop down list from which you can select the correct reference type for the item you are entering EndNote will automatically suggest Authors Journals and Keywords if they already exist in that Library s Term List Red text indicates that the data is not in the Term List for that particular Library and so EndNote is prompting you to check that it is actually new data and not a misspelling A useful check that you are entering data correctly but a check that is only applied to these three fields If you start to type data into the wrong reference type it is not a disaster Simply change the reference type using the Reference Type drop down list and the data you have already entered should be reassigned correctly to the new reference type s fields SAVI
63. o subsets each Group containing a different subset of the references in the Library There are two types of Groups those that are generated automatically All References Search Results and Transferred References and others Custom Groups that you create to organise your Libraries Remember Groups are virtual Groups just contains pointers to references in the Library WORKING WITH GROUPS Group functions are accessed via the Groups option on EndNote s menu bar i EndNote X5 X5_Test File Edit References Tools Window Help A x Ql aroa IS OQQ0OE8 a l My Library 8 Author Title Journal Ref Type Zhang D H Zebrafish neurotoxicity from aphanto Environ Tox Journal Arti All References 266 S Unfiled 266 Yang S Po Distribution of marine red yeasts in 5 Curr Microb Journa Arti _ http Aan 2 Yang S P 201 Distribution of marine red yeasts ins Curr Microb Journal Arti htto wwwr Wi Trash 1 Wormer L 20 First detection of cyanobacterialPS Toxicon Journal Arti htto Awww r a My Groups Wong C K 20 Cluster analysis of toxins profile patte Environ Res Journal Arti http Awww r y P Watanabe 20 Preparation of calibration standards Mar Drugs Journal Arti http Awwnwr Online Search Wang Z H 20 Source and profile of paralytic shellfi Mar Enviro Journal Arti httpvwwe r Gien Con 0 Wang S L 20 Biodegradat
64. o the Trash Group it is no longer in the Library it will not appear in any other Group or reference list nor will it be included in your reference count and it cannot be either searched for or cited However until you empty the Trash Group you can still drag the reference from there back into any active Library DETECTING DUPLICATED REFERENCES iFind Duplicates EndNote offers a function which ee eea searches the references that are keen Trs Recora reen Tier currently showing in the Library van Eijk 2004 7 van Eijk 2004 45 Author Author window to identify duplicates van Eijk A M van Eijk A M Aisi J G Aisi J G Duplicates are determined based on ter Kuile F O ter Kuile F O Slutsker L Slutsker L the criteria specified in your EndNote Otieno J A Otieno J A AET Leder preferences To find ALL the eos oat coon duplicates in a particular Library you Nahin EL oer must select all the references Select peer Neat References Show All References 2004 2004 Added to Library 17 08 2009 Last Updated 17 08 2009 Added to Library 19 08 2009 Last Updated 19 08 2009 From En d N ote s menu bar sel ect References Find Duplicates EndNote will display in which you can compare duplicates and decide which version to keep and which to delete DELETING DUPLICATED REFERENCES For each set of duplicates you have the option to Click on the Keep This Record button to save that particular referen
65. on one of the references This displays the reference ready for editing You can now change any of the reference s details adding say some text to the lt Notes gt field or correcting any spelling mistakes When you have finished editing the reference close the window and click on the Yes button to save it Pts Save changes as you make them by pressing the key combination lt Ctrl S gt A A E regularly This saves the data but keeps Once navigating off this record Revert Reference will not be available the reference on screen to allow further Do not display this message again editing Alternatively press the key f combination lt Ctrl W gt to close the reference displaying the confirmation panel shown here SHOWING OR HIDING EMPTY FIELDS DURING EDITING The Show Hide Empty Fields button at the top right hand side of the reference editing window allows you to show or hide the empty fields in the reference that you are currently editing y Show Empty Fields SPELL CHECKING REFERENCES EndNote can spell check references that are open so the spell check command is eam m available only when you have a reference TR Cignare al J open for editing At other times the Spell E Check button will be greyed out Spelling is checked in all the fields of a reference except the lt Author gt and lt URL gt fields Check Spelling Not in Dictionary Add words to s Cases To initiate spell ch
66. ord s EndNote ribbon EndNote X5 August 2011 Paseo 9 The Black Death The Black Death is categorized into three specific types of plague bubonic plague infection of the lymph nodes or buboes pneumonic plague infection of the lungs and septicaemic plague infection of the blood the most deadly of the three Scientists and historians at the beginning of the 20th century assumed that the Black Death was an outbreak of the same diseases caused by the bacterium Yersinia pestis and spread by fleas with the help of animals like the black rat Rattus rattus Once infected by Yersinia pestis it is estimated that victims would die within 60 180 days However this view has recently been questioned by some scientists and historians and some researchers believe that the illness was in fact a viral hemorrhagic fever based on epidemiological interpretation of historical records of the spread of disease Altschuler amp Kariuki 2008 Altschuler E L amp Kariuki Y M 2008 Did the 1918 flu virus cause the Black Death Med Hypotheses 71 6 986 987 An alternative to using Citation Insert Citation Find Citation from Word s EndNote ribbon is to click on CitationsGo to EndNote on Word s EndNote ribbon and select references directly from your EndNote Library Highlight a reference in the Library window and then use the Insert Selected Citation s command on EndNote s Tools Cite While You Write CWYW menu option USING
67. out a search for the keyword that you have entered It s not very sophisticated but it is quick ADVANCED SEARCH To carry out a more sophisticated search of an EndNote Library click on the Show Tab Pane button at the bottom of the Library window and select the Search tab You can then carry out your search of the open Library restricting your search to the showing references or the full Library CUSTOMISING THE SEARCH FUNCTION Search for an author called Williams and you will also retrieve authors with names e g Williamson in which the search term Williams is embedded Look for a keyword such as state and you will retrieve references containing words with state embedded in them e g statement restatement restated etc This increases retrieval for any search term but it can be very confusing You can turn off this feature by ticking the Match Words check box on EndNote X5 August 2011 pace Z 8 the Search tab You can also make your search case sensitive by ticking the Match Case check box USING BOOLEAN LOGIC IN SEARCHES AND OR NOT An understanding of Boolean Logic is essential if you are to search any database effectively and that includes EndNote Libraries Boolean Logic uses three Boolean operators or connectors AND OR and NOT sometimes implemented in other search engines as ANDNOT or AND NOT The effect of these logical operations can be described visually using the Venn diagrams shown above where the shaded a
68. raphy window shown below Al Thukair A A 4 REFERENCE LIST Al Qashar F A To modify the term selections you Peer araoment i he kradom ofBahran Nasta Maaa ZAE AOD have just set adding or removing terms from the selected field s click Altamirann limene7 A ay ws rane Prevew 7 on the Terms button Subject headings print as they appear in your records No special formatting of author names and no journal title substitution is applied EndNote X5 August 2011 Page 3 To modify the layout click on the Layout button Verify the settings on the References Terms Page Layout and Bibliography Layout tabs particularly these items on the References tab Output style which determines the bibliographic style used to format each reference Reference List Title which prints at the top of the bibliography and Reference List Order which determines the order of references under each subject heading Click on the Terms tab to set options specifically for subject headings Click on the OK button to save changes to all of the Layout tabs Once your subject bibliography is set up the way you want it you can do one of the following things Print an on screen preview by clicking on the Print Preview button Print to your printer by clicking on the Print button A print dialogue window will appear Verify the settings and click on the OK or Print buttons Print
69. rea represents the set of references that results from each of the three Boolean operations You can combine search lines in EndNote using the Boolean operators AND OR and NOT to produce the following effects A Boolean AND operation finds references that match the preceding search line s and the following search line AND narrows search results e g searching for triceratops AND extinction finds only those references that mention both terms A Boolean OR operation finds references that match either the preceding search line s or following search term OR broadens the search e g searching for triceratops OR extinction finds all the references that include either term or both terms A Boolean NOT operation finds all references containing the preceding term s and then omits references that contain the subsequent term NOT narrows search results e g a search for triceratops NOT extinction finds all references that contain the word triceratops but discards any references that mention extinction You can use the Boolean operators AND OR and NOT in sequence with as many as nine search lines to build your search strategy The Boolean operators are select5ed from drop down lists at the start of the second and subsequent search rows Items in combination searches are executed from the top to the bottom of the search window For example if you have entered four search lines in the search window EndNote carries out the search by combining
70. s If you would like to purchase a copy of the latest version of EndNote for your own computer you must buy this from the UK vendor Adept Scientific http www adeptscience co uk Currently our site licence allows individuals to buy their own copy of EndNote at a cost of around 70 ENDNOTE WEB You don t want to spend 70 buying your own copy of EndNote Alternatively you can subscribe to a free Web based version of EndNote EndNote Web have written a guide to this and if you email me andy barrow port ac uk will send you a copy of it EndNote X5 August 2011 Page 5 3 APPENDIX COLLECTING REFERENCES FROM SELECTED BIBLIOGRAPHIC DATABASES The following section has been written by Lisa Jeffrey to whom my very grateful thanks are due Note that you may still need to edit references imported into EndNote in order to comply with the University s Harvard Format APA Style or Vancouver Format Note that database search interfaces do change and it s hard to keep up with changes The following instructions are correct at the time of writing August 2011 IMPORTING REFERENCES FROM CAMBRIDGE SCIENTIFIC ABSTRACTS DATABASES Search your chosen CSA database to get some search results on screen Click in the checkbox next to each reference that you want to export to EndNote Click on the Save as file link at the top of the search results screen The Save as file window will open Select the correct file formats Citation
71. select them Once you have selected your reference s you can add them to a Group in any of the following ways You can drag and drop the selected references onto an existing Custom Group in the Groups Pane of the Library window You can select Groups Add References to from EndNote s menu bar and then select a destination Group for the references You can right click on the reference list to display a contextual menu select Add References to from it and then select either an existing Custom Group or create a new Group for the references DELETING REFERENCES FROM A GROUP To delete references from a Group highlight the references go to the All References view and then delete them by selecting ReferencesMove References to Trash This command deletes the selected references from the Group moving them into Trash EndNote X5 August 2011 paged 5 DELETING A GROUP To delete a Group right click on the Group s name in the Groups Pane Select Delete Group and then confirm that the deletion should be carried out This will delete the Group although all of the references from that Group will still exist in the Library RENAMING A GROUP To rename a group right click on the Group s name in the Groups Pane You can now rename it by selecting Rename Group from the menu You cannot rename All References Unfiled and Trash SEARCHING GROUPS You can search your Groups for references limiting your searching to a specif
72. sert as in text fo citations in your Word document Insert Citation gt Insert Note adds custom text citations to your Word document The Insert Citation gt Insert Selected Citations command inserts a citation for each reference currently selected in the open Library you can insert up to 50 consecutive in text citations The Insert Citation Find Figure command searches for an EndNote reference that contains a figure and inserts that figure or table citation in your Word document The Go to EndNote command brings EndNote to the front of your screen This command will launch the EndNote program if it is not already running The Edit Citation s command is used to edit existing citations Using this command you can omit the author and or year from author date style citations or add prefix or suffix text such as page numbers to author date style citations Once you have inserted a citation into the text of a Word document any subsequent editing of that citation must be done through the Cite While You Write function or through EndNote itself If there is an error say a spelling mistake in the text of the reference don t correct this using Word Go to EndNote correct the error in the reference in the EndNote Library and then reformat the bibliography The Edit Library Reference s command enables you to highlight an in text citation and directly edit the corresponding reference in the linked EndNote Library BIBLIOGRAPHY GROUP
73. t al 2011 Zebrafish neurotoxicity from aphantoxins cyanobacterial paralytic shellfish poisons PSPs from Aphanizomenon flos aquae DC 1 Environ Toxicol Preview Search PDF amp Quick Edit Search Whole Library i x Match Case Match Words Author Contains B fana w vear Contains y B and x Title Contains Oe Preview Search PDF amp Quick Edit d fan EE y 4 X a Reference Type Journal Article z Y Show Empty Fields There are no PDFs attached to this reference J Author a v Showing 266 of 266 references Hide Tab Pane ENDNOTE LIBRARIES ARE JUST FILES EndNote Libraries are files So like any other files they can be copied renamed deleted moved compressed corrupted and LOST Back them up regularly Select FileSave a Copy from EndNote s menu bar to make a copy of a Library in the location of your choosing EndNote X5 August 2011 Page9 POPULATING AN ENDNOTE LIBRARY There are five methods of populating getting references into an EndNote Library some more convoluted than others You can gather references by Exporting references from an online database Many databases e g Google Scholar and Web of Knowledge support direct_export to EndNote Libraries so that having executed a search in the database you can export the retrieved references directly into EndNote Importing downloaded data An EndNote Library can be populate
74. t to Plain Text command saves a copy of your document without Cite While You Write field codes The formatted citations and the bibliography are saved as text Convert Citations and Bibliography Convert Word 2007 Citations to EndNote converts any Word 2007 citations in the document to EndNote Cite While You Write citations EndNote X5 August 2011 Page 6 Click the arrow in the bottom right corner of the Bibliography group to display a tabbed dialogue pane of formatting options When you click on the OK button to leave the dialogue pane EndNote formats your paper according to the rules of the selected style By default Instant Formatting is turned on so your citations and bibliography are automatically formatted as you work find this irritating so turn the feature OFF TOOLS GROUP A number of functions are available from the Export to EndNote drop eye own The Export Travelling Library function creates an EndNote rane nae Library from the references used in your paper The Export Word 2007 Citations function creates an EndNote Library from any Word 2007 2 Export to EndNote citations found in the document The Export Word 2007 Master List function creates an EndNote Library from the Word 2007 master list of citations Click on the Preferences button to change general Cite While You Write preferences change the EndNote keyboard shortcuts available in Word change figure and table settings or s
75. te Web eB E Web Layout Ruler Document Map j One Page 5 New Window e e 5 4 _3 Outline Gridlines Thumbnails nl FE Two Pages Arrange All Sr Print Full Screen __ Zoom 100 Switch Macros te a alp Page Width C3 Split o Windows lt Show Hide Zoom Window Macros Document Views Merging the master document and subdocuments is achieved via Word 2007 s View tab Click on this tab and then click on the Outline option in the ribbon s Document Views group Having manipulated your master document and subdocuments you can return to a normal view of your document by clicking on the Print View icon at the bottom of the screen If your bibliography needs formatting it can now be done from anywhere within the master document the in text citations within the document will be reformatted but the individual chapter bibliographies will not be reformatted If you need to format the bibliographies for each individual chapter they can only be formatted from with the subdocuments themselves UPDATING SUBDOCUMENTS WITHIN THE MASTER DOCUMENT To update subdocuments you must first use the Collapse subdocuments button to display the subdocuments as hyperlinks lt Ctrl Click gt on these one at a time to open them and once each subdocument is open reformat its bibliography Make sure you close and save each one after reformatting When all the chapters have been updated use the Expand subdocuments button and the chapters will be automatic
76. that you have a valid account on EndNote Web the screen below will be displayed showing a Group the open Group in your EndNote Web account EndNote Web Transfer References Web Geology of Oman Ole M Allow Duplicates O Transfer References from Desktop to Web You may change the EndNote Web Group using the drop down list in the Web box and you can also change the direction for the transfer of the references If references are transferred UP to the Web from your desktop they are taken from the currently open EndNote Library if they are transferred from the Web DOWN to your desktop the references are placed in the currently open EndNote Library You may also customise the transfer so that duplicate references are not transferred from EndNote Web to the desktop EndNote or vice versa s The EndNote Web library has 18 references 9982 references can be added Once you have customised the transfer process click on the Transfer button to initiate the transfer of references You can get information about your EndNote Web account by clicking on the Web Library Info button as shown in the panel above Note that an EndNote Web account can only hold 25 000 references Only Page49 EndNote X5 August 2011 GENERATING BIBLIOGRAPHIES FROM RICH TEXT FORMAT FILES If you don t have Microsoft Word on your computer can you use Cite While You Write Well no you can t but happily that s not the end of
77. the health r J Hazard M Journal Arti httovwww ncbi nim 09 08 20 Make sure that you have a Library open and that you have selected a few references in the Library window Next select ReferencesShow Selected References from EndNote s menu bar You will now be able to see only those references that you selected At this point you must sort the references into the order you wish them to appear in your bibliography Now you must decide on the bibliographic style that you wish to use for your bibliography To generate the bibliography click on the Export button on EndNote s toolbar This will open the Export file name panel in which you choose a location filename file type and output EndNote X5 August 2011 Page 1 style for your bibliography Clicking on the Save button saves the file with the parameters you have chosen VIEWING THE READING LIST To view the bibliography you have just created use a word processor to open the file which you have just saved Below are three references output in Vancouver Format Al Mahmeed A Senok A C Ismaeel A Y Bindayna K M Tabbara K S amp Botta G A 2006 Clinical relevance of virulence genes in Campylobacter jejuni isolates in Bahrain J Med Microbiol 55 Pt 7 839 843 Assmar M Terhovanessian A Jahani M R Nahrevanian H Amirkhani A Piazak N et al 2003 Molecular epidemiology of malaria in endemic areas of
78. the story If your word processor can produce Rich Text Format files you can format a document s citations and bibliography using EndNote s Format Paper function select ToolsFormat Paper Format Paper This will scan a Rich Text Format document for temporary citations and process these into in text citations and a bibliography saving the formatted version separately from the original document When citing a reference in your Rich text format document type the information as shown below using curly brackets and to delimit the temporary citations Suggested formats are shown in the table below Library Reference Contains In text Temporary Citation Layout Single reference from author Author s Surname Year Multiple references from author with Author s Surname Title or any other field unique to same year the reference cited Multiple references within the same First Author s Surname Year Second Author s citation Surname Year Anonymous reference with unique year Year Anonymous reference with non unique I Year Title or any other field unique to the year reference cited When you are ready to format your citations and bibliography save a copy of the file in Rich Text Format Select EndNote s Format Paper function choose the Rich Text Format document to be scanned and the temporary citations will then be converted into in text citations and the bibliography will be produced After the formatting is complete co
79. thor Year v Tite Journal Ref Type URL Last Updated N 011 Zhang DH Zebrafish neurotoxicity from aphanto Environ Tox Journal Arti httpviwwiwncbi nim 09 0 201 F ang S P 20 Distribution of marine red yeasts ins Curr Microb Journal Arti http wwnwencbi nim 09 08 Yang S P 20 Distribution of marine red yeasts ins Curr Microb Journal Arti htto wwwencbi nim 09 08 201 Wormer L 20 First detection of cyanobacterial PS Toxicon Journal Arti httpviwwencbi nim 09 08 20 Wong C K 20 Cluster analysis of toxins profile patte Environ Res Journal Arti http www ncbi nim 09 08 201 Watanabe 20 Preparation of calibration standards Mar Drugs Journal Arti httpo Awwwynebi nim 09 08 201 Wang Z H 20 Source and profile of paralytic shellfi Mar Enviro Journal Arti http Awww ncbi nim 09 08 20 Wang S L 2011 Biodegradation of shellfish wastes a Biodegrad Journal Arti htto Mwwwencbi nim 09 08 2011 Villegas R 20 Fish shellfish and long chain n 3 fatt Am J Clin N Journal Arti htto Mwwwencbi nim 09 08 20 van den Top 20 Surface plasmon resonance biosens Anal Chem Journal Arti htto wwwencbi nim 09 08 20 a a a Turner A D 20 Comparison of AOAC 2005 06 LC o Anal Bioan Journal Arti htto wwwencbi nim 09 08 2011 These A KI 20 Results of a European interlaboratory Anal Bioan
80. ti htto4Awww ncbi nim 15 08 20 Arnold 2009 Subject Bibliography r sensitivit Environ Tox Journal Arti htto iwwe nebi nim 15 08 20 Audemard 2008 Manuscript Templates for Perkin Dis Aquat Journal Arti htto wwwenebi nim 15 08 20 Aveiro 2009 _ fe shellfish Arch Latino Journal Arti http aww ncbi nim 15 08 20 Ayuso 2011 Update on the diagnosis and treatme Curr Alleray Journal Arti htto www nebi nim 15 08 20 In EndNote select Tools Cite While You Write CWYW and a menu of options appears The Insert Selected Citation s command inserts a citation at the cursor point in the currently open Word document the Format Bibliography command re formats the bibliography in the currently open Word document and the Return to Word Processor command returns you to your Word document INSERTING A REFERENCE INTO A DOCUMENT A reference will be entered into the above text and the document will be formatted using the APA 5 style corresponding to the fifth edition of the American Psychological Association s Publication Manual This is a commonly used author date style and is the closest of EndNote s out of the box styles to the Harvard Format APA Style used at the University of Portsmouth APA 5 style is closer to the University of Portsmouth s Harvard APA style than is EndNote s Harvard style so use APA 5 style if you need to produce a bibliography in Harv
81. ticle you wish to export Click on the Export Citations link Select Citation only or Citation and Abstracts Select RIS format for Reference Manager ProCite EndNote Click on the Export button A window will open offering EndNote as a destination for the references Click on EndNote and the selected references will be transferred into the currently open EndNote Library and displayed on screen IMPORTING REFERENCES FROM SCIRUS Search the Scirus database to get some search results on screen Click on the checkbox to the left of each article you wish to export You can only export references a page at a time you can check the whole page by clicking in the checkbox at the head of the search results screen Click on the Export button Select Citation only or Citations Abstracts and Keywords Select RIS Format Click on the Export button The File Download window will open Click on the Save button to open the Save As window In the Save As window select a memorable location for the file and then click on the Save button When the download is complete click on the Close button Click on the Import button on EndNote s toolbar to open the Import File window in which you must o Select the downloaded text file o Select the RefMAN RIS Import Filter o Click on the Import button to import the references if successful a progress bar will show the progress of the import process IMPORTING REFERENCES FROM THE WEB
82. to a disk file Text Rich Text Format or HTML by clicking on the Save button A dialogue will appear for you to name and locate the file Choose the file type name and location for the then click on the Save button Close the Subject Bibliography window by clicking on either the Close button or the X button at the window s top right hand corner when have finished viewing it EndNote X5 August 2011 Page 4 CITE WHILE YOU WRITE WORD 2007 INTRODUCTION Cite While You Write CWYW links EndNote with Microsoft Word to cite references figures and tables creating a Word document with properly formatted citations and bibliography In Word 2007 Cite While You Write gives you access to EndNote references and formatting commands via an EndNote X5 tab that appears at the extreme right of the tab bar On inserting a citation into the document the bibliography is reformatted then and there following the Output Style you have chosen This is Instant Formatting but it can be turned off if you find it distracting However if you do turn it off you will need to explicitly update your citations and bibliography at regular intervals but you may find this suits you better than having it done automatically every time you add a new citation to the document TRAVELLING LIBRARY A Travelling Library allows you to reformat references embedded in your Word document even when your EndNote Library is not available Collaborating
83. ton When the download is complete click on the Close button Click on the Import button on EndNote s toolbar to open the Import File window in which you must o Select the downloaded text file o Select the Emerald Import Filter o Click on the Import button to import the references if successful a progress bar will show the progress of the import process IMPORTING REFERENCES FROM ENGINEERING VILLAGE Search the appropriate Engineering Village database to get some search results on screen Select the references you would like to export to EndNote by clicking in the checkbox next to each search result Click on the Download button at the top of the Results Manager box Select RIS EndNote ProCite Reference Manager as the format for your download and click on the Download button The File Download window will open Click on the Save button to open the Save As window In the Save As window select a memorable location for the file and then click on the Save button EndNote X5 August 2011 Page 5 5 When the download is complete click on the Close button Click on the Import button on EndNote s toolbar to open the Import File window in which you must o Select the downloaded text file o Select the Reference Manager RIS Import Filter o Click on the Import button to import the references if successful a progress bar will show the progress of the import process IMPORTING REFERENCES FROM GOOGLE SCHOLAR
84. ton to continue Do you wish to continue z You can now save the stripped document under a new name and send this version the one lacking the embedded field codes for the Travelling Library citations for publication Keep the original document as the master copy as you will need to use it if you wish to add or remove any references from the document Page4 7 EndNote X5 August 2011 UNIVERSITY OF PORTSMOUTH REFERENCING STYLES The University of Portsmouth broadly uses two referencing styles Vancouver Format is used by most students in the School of Pharmacy amp Biomedical Sciences and Harvard Format APA Style is used by most other Departments and Schools A citation style OSCOLA used by Law students is now also supported by EndNote EndNote supports Vancouver Format fully but in the case of Harvard Format APA Style the closest you can get to this citation style with EndNote s pre supplied citation styles is to use the citation style called APA 5 style Below is the same journal article showing its appearance when formatted using Vancouver Format and APA 5 style citation formats Vancouver Format Sjoblom T Limits to the Human Cancer Genome project Response Science 2007 315 5813 762 766 APA 5 Sjoblom T 2007 Limits to the Human Cancer Genome project Response Science 315 5813 762 766 DEPARTMENTAL VARIATIONS The History Section in the School of Historical and Literary Studies
85. u bar Doing so will open the New Reference Library panel suggesting My EndNote Library as the name of the new Library You may change the Library s name and location if you wish and when you are happy with the file name and the location click on the Save button to create the new library 3 EndNote Web a simplified version of EndNote is described in a separate guide copies of which are available from the Library guides page http www port ac uk library gquides EndNote X5 August 2011 BaseO OPENING AN EXISTING ENDNOTE LIBRARY Open an existing EndNote Library by selecting FilesOpenOpen Library from EndNote s menu bar Doing so will open a panel allowing you to select the Library to be opened Having selected the Library you want to open click on the Open button to open it A EndNote X5 Select a Reference Library SOF Edit References Groups Tools Window Help My EndNote New Open Open Library 1 N My EndNote x5_Test mi Documents a rl 2 N My EndNote Florence Save As 3 E IR Depositor training data ave a Co 4 REF refs combined Desktop Revert 5 E REF refs RW 6 E REF refs JP D 7 N My EndNote January 2011 8 REF refs RW Export Import b My Documents Prin Ctrl P Print Previ Print Setup My Computer Filename z My Network Files of type Libraries enl lib enlx Cancer Exit Ctri Q
86. u have created are listed alphabetically click the header to toggle between A Z or Z A order under the My Groups heading When you click on a Group s name the name is highlighted and the reference list is updated to display that Group s references You can move the separator between the Groups and Reference List panes to adjust their relative sizes but you may not always want to display the Groups Pane as it can take up a significant amount of the screen Select Groups Hide Groups from EndNote s menu bar to hide the Groups Pane Redisplay the pane by selecting Groups Show Groups EndNote X5 August 2011 Page d 4 SOME IMPORTANT POINTS ABOUT GROUPS You can create a maximum of 500 Custom Groups in a single Library You can add a reference to a particular Group only once although any reference can be a member of any number of different Groups Deleting a reference from a Custom Group does not delete it from the Library rather it removes the reference s pointer from the Group Deleting a reference from a Library deletes it from any Groups that contain it but you cannot delete a reference from a Library while it is displaying in a Custom Group to do this you must highlight the reference go to the All References view and then delete it When you view a Group of references containing highlighted references viewing All References will show the same references highlighted in this view You can drag references from on
87. uses its own variation of Harvard Format APA Style where references are cited as footnotes rather than at the end of the document Other sections in the School of Historical and Literary Studies use unmodified Harvard Format APA Style EndNote X5 August 2011 Page4B LINKING ENDNOTE X5 TO ENDNOTE WEB There is now a simpler version of EndNote available EndNote Web EndNote Web has the advantage that it is Web based and so your databases of references which EndNote Web confusingly calls Groups rather than Libraries are accessible to you from anywhere with Internet access As you might expect EndNote and EndNote Web can exchange references in either direction An EndNote Web account is now included in the purchase price when you buy desktop EndNote or is as is the case at the University of Portsmouth free to all University of Portsmouth users by virtue of the fact that we network EndNote X5 to our users desktops Once you have established an EndNote Web account linking to it is carried out from within EndNote rather than from within EndNote Web the linking procedure being invoked by selecting Tools EndNote Web from EndNote s menu bar It should go without saying here that an open Internet connection is Warning Manually applied text style Formatting bold italic etc is not retained using Transfer necessary for this to work Once cme Connection with EndNote Web has been established and it has been confirmed
88. ve web page We ll look at the example of searching PubMed one of the few databases which can be searched using EndNote To search PubMed click on the Online Search button which can be found on the EndNote toolbar 4 EndNote X5 X5_Test BA Z Fie Edt References Groups Tools Window Help 3x Q O amoa ee dep DE IOANE ERAT 7 e Author Year Title Journal Ref Type URL Last Updated Choose A Connection sa Clicking on the Online Search button opens Ta EEE the Choose a Connection panel Select AER iy ee ee Periodeal Abs OC occ available databases either by scrolling down Portsmouth Library Catalogue Library Catalogs the list which is a long one or by typing Pretedine ovdSP ows pubmed into the search box and pressing the Proceedings OCLC ro tied lt Return gt key Sadly most of EndNote ie ig oe databases are American and European ith si Ges Library catalogues not the most useful ae Nn rn sources of journal articles Purdue U Calumet Library Catalogs Lihv ners Oabalane Ditech in Li Blavth Content v x File Name PubMed NLM enz Created 14 July 2011 11 00 34 Modified 28 March 2011 11 43 22 Based On Category NLM Comments This js an HTTP based connection file for the National Library of Medicine s PubMed Showing 499 of 499 connection files EndNote X5 August 2011 Page 1 4 Having highlighted the database that you want to search click on the Choose button to open a Z
89. vis Real time PCR detection of the thermostable direct hemolysin and thermolabile hemolysin genes in a Vibrio parahe Milam Acute toxicity of six freshwater mussel species Glochidia to six chemicals implications for Daphnids and Utterbac Zhang Research advances in behavioral ecology of penaeid shrimp II Effects of environmental Factors on behavior of p Amzil Report on the first detection of pectenotoxin 2 spirolide a and their derivatives in French shellfish Fortuine Paralytic shellfish poisoning in the north Pacific two historical accounts and implications For today 1975 Gabrieli Enteric viruses in molluscan shellfish Blanco Anatomical distribution of diarrhetic shellfish poisoning DSP toxins in the mussel Mytilus galloprovincialis Guldner Maternal fish and shellfish intake and pregnancy outcomes a prospective cohort study in Brittany France Robertson The potential for marine bivalve shellfish to act as transmission vehicles For outbreaks of protozoan infections in h Casas Evaluation of an extracting method for the detection of Hepatitis A virus in shellfish by SYBR Green real time RT F Baker Austin Antibiotic resistance in the shellfish pathogen Vibrio parahaemolyticus isolated from the coastal water and sedimet Manna Microbiological quality of finfish and shellfish with special reference to shiga toxin producing Escherichia coli 0157 Turrell Optimization of hydrophilic interaction liquid chromatography mass spectrometry and development of solid
90. witch to EndNote Web Cite While You Write How do you know which version of EndNote you are using The legend that appears on the Word 2007 tab indicates which EndNote application is being used by Cite While You Write EndNote X5 your desktop application or EndNote Web EndNote Web covered by a separate guide offers a more limited number of Cite While You Write commands The EndNote Help button displays help about Cite While You Write features ENDNOTE S TOOLS MENU Several Cite While You Write commands also appear on the Tools menu in EndNote To use these commands from within EndNote you must use at least one Cite While You Write command from within Word during the current session EndNote X5 August 2011 Page 7 ENTERING CITATIONS IN AUTHOR DATE OR NUMBERED STYLES USING AN AUTHOR DATE STYLE E G HARVARD The Harvard referencing style is an example of the author date referencing style Within the text of a document a reference is cited in abbreviated form Smith 1993 hence the name author date In the list at the end of the document references are given in full listed alphabetically by their first author Where more than one reference is given for a particular author they are arranged in ascending date order Different references by an author written in the same year are treated as 1993a 1993b etc A small piece of text about the Black Death will be used to illustrate referencing
91. with other authors You can use the Travelling Library to supply reference information without needing to supply the EndNote Library as well WORD S ENDNOTE TAB O OG X5_transfer Microsoft Word a aaa Home Insert Page Layout References Mailings Review View Add Ins EndNote X5 EN Go to EndNote Style APA 5th X s Export to EndNote eS J Edit amp Manage Citation s z Update Citations and Bibliography ff Preferences Insert Citation PA Edit Library Reference s 5 Convert Citations and Bibliography EndNote Help Citations Bibliography g Tools When Cite While You Write is installed several EndNote commands appear on an EndNote X5 tab in Word 2007 When you click on this tab the EndNote program starts if it is not already running and a Cite While You Write submenu also becomes active on EndNote s Tools menu displaying some of the EndNote commands that are available on Word s EndNote X5 tab Below are brief descriptions of the Cite While You Write commands that are found on the EndNote X5 tab in Word 2007 The commands are arranged into three groups Citations Bibliography and Tools Any version of Word from Word 97 onwards EndNote X5 August 2011 Page 5 CITATIONS GROUP Se A number of functions are available via the Insert Citation drop 2 n down menu The Insert Citation Find Citation command is EE Vp tait Library References USED to search for references to select and in

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