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        pLinguaPlugin: User`s Manual
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1.                                     0 8    Ha ic  ADA 0 qQ B5G  m0o4  3  v  4 BPPPPP    i eer H ar S   Modeling  3  gt    Of tmemoraitex 53  gt   Il Aetinsupperter java    I PeystemivizardParamet SO Eon Ole A Sa    est  Software Projects Scftwa     item Seleccionamos con el bot   o n derecho del rat   o n eA    oe Qe    EI com plngueplugn auiary  queremos exporter  Este fichero debe encontrarse dentro    w l        53 com qualtyecipse  favorites  Software Projects Softw de un proyecto con naturaleza  textit P Lingua   aunque no e     EI com qualtyecipse favortes test encuentre en formato P Lingua  basta con que esti  e  coditi   WW NBR Preamble  EI Compatb  ty formato de entrada reconocido por  textit pLinguaCore  copyr       Gllengusje UM   SE copia  begin center         Edpse  I Copy of com gcn pinguaplugn e Vincludegraphics sidth incw  imagenes menu contextual fi   Preambk    9 Pinua      BI Copy of org gen plngueplughn copy3 Vena  center   item     amp    ange           punguacore  E aneta pn ll ces  observamos que aparece un nuevo men   u   Dentro c Edipse  amp    pLinguaPlugin      5 ogame  tw  situamos el rati  o n sobre la opciV  c n  textit     9 O Pina   Bi org cen pli Open Fa vamos que aparece otro nuevo men   u   B   O plinguxc  Gi org gen pl open with     Lingua    organ show In  Alsa    ko de este men   u   seleccionamos la opci   o n  textit O inte    gana     Seleecidnemos ton el Boct tore izquierdo del POATEN 50 insti  S iih org gen pl     Copy cuc mos export
2.                           r3  a   Da A E   4 B Addiremove P Ungua project nature Friera PPPPPP     E Se ns TA o B beet esten 5  3 IP impar P system d     2    12 Package Explorer   2  ey oy   Di PsystemwizardParamet    enzo 09 Base gj SO   E 153 com cen plngueplugin test  Software Propatsjschwn    J   NewP System le este men   u   seleccionamos AM Bau wx  M paa a aid Open Simulation Console 5     Ge d comqualtyecipse favores  Software Projects Softw P   98  3  EI com qualtyecipse favortes test Vincludegraphios sidth 10cs   imagenes seleccion nueva si ax Preamble      Gi Compatib  ty  SE copla              M Cony d con hoop sistema queremos simular  Este fichero debe encontrarse dent      BI Copy of org gcn plinguaplugin copy3 de un proyecto con naturaleza  textit P Lingua   aunque no e       Ey currentGUIO6 10 08  Software Projects Software Pro  encuentre en formato P Lingua  basta con que esti  e  codifi     ia org  gen plinguaplugin  Software Projects Software Prd formato de entrada reconocido por  textit pLinguaCore  copyr         EI org ocn pingusplugin copy  begin center  El  TE org gcn plinguaplugin copy4 Vincludegraphios sidrh 10cw  imagenes seleccion fichero   1 org gcn pinguaplugin copyS Nend center   E oro cn pingueplugn copy   Posteriormente  accedemos a la pesta  na llamada Vtextit P L  E Ib o  a gen plinguaplugin memo  Software Projects Softw    men   u  principal de Eclipse  Por V  w ltimo  seleccionam _   G   imagenes  textitiNew Simulation   dentro de este men
3.                    d memoria pdf   org gcn plnguaplugin  memo  i          Inside this new menu  left click on the option Other  Immediately  a new  window appears     E New    Select a wizard    Wizards     43        type filter text       G dass     interface  d  Java Project  3  Java Project from Existing Ant Buidfile  198 Plug in Project  8 C5 General  22  amp  Andromoa  D  sS os  2  Edipse Modelng Framework     E EdpseDatabase  E  Ecore Tools     amp  eDepend Diagrams  E    eEMF Diagrams  E  eUML2 Diagrams   amp    amp  gt  Example EMF Model Creation Wizards     GMF   pand     amp  Graphical Modeling Framework     E tava      amp  Java Emater Templates  3  amp  JET Transformations  Usp        Model to Model Transformation  s cU     Es Perl  E  gt  Plugin Development  EEN  E  Tasks      amp  Texipse      amp  UML 2 1 Diagrams      amp  UML Diagrams  58  gt  User Assistance      amp  Other  8  amp  Examples                Inside this new window  left click on the menu P Lingua and  inside this    menu  left click on the option P System     E New    Select a wizard    Wizards            type fiter text  G dass     interface  dS Java Project  3  Java Project from Existing Ant Bulle  1j  Plug in Project  E  amp  General  S  amp  Andromoa  ESA  a Es cus   amp  Ecipse Modeling Framework        EdipseDatabase   E  Ecore Tools  E  eDepend Diagrams  E E eEMF Diagrams  S E eUML2 Diagrams  de E Example EMF Model Creation Wizards  E  GMF Xpand      E Graphical Modeling Framework  SE J
4.                  men  u   Dentro de este nuevo men    u   seleccionamos la or   textit  Import P System    e  begin  center    includegraphios     idth  10cm   imagenes import psystem jpc   end center    item Seleccionamos con el bot   o n izquierdo del rat   o r  directorio donde queremos guardar el fichero resultante de 1  Wegintcenter   Vincludegraphios sidth 10cm   imagenes seleccion director  Vend  center   item  Este directorio debe encontrarse dentro de un proyecto con r  Mtextit P Lingua   Posteriormente  accedemos a la pesta  na    u ltimo  seleccionamos la opciV  o n  textit  Import P Sys  este men tu     end  itemize     DON O E       Y Hierarchy   2             3 mE cr       Sw  Bm                  eee Bk RB   rt El   r3   Gera ocn pinguepon   am Files MiKTeX 2 7 fonts typei bluesky cr      0    2 7 fonts typel bluesky cm cmitt10 pfb    C    b1uesky cn cmni 10  pfb    C  Program Files l  5 pfb gt  lt C  Program Files MiKTeX 2 7 fonts t  Files MiKTeX 2 7 fonts typel bluesky cm c   fonts typel bluesky cm cmr5 pfb    C  Progr  ky cm cmr 7 pfb    C  Program Files MiKTeX 2   C  Program Files MiKTeX 2 7 fonts typel b   MiKTeX 2 7 fonts typel bluesky cm cmsy7     typei bluesky cm cmtii0 pfb    C  Program I  m emtti0 pfb    Output written on memoria pdf  78 pages     Transcript written on memoria log     a    p  flatex   pdflatex   pdflatex   p  flatex   pdflatex   p  flatex   pd  latex   p  flatex   pdflatex   pdflatex   paflatex   pdflatex   p  flatex     exe    exe    
5.                Zpinguo  2 Dex  org gen pinguapku   s J      3 segunda dvi  Trabajo IA  Te Hierarchy   2    EB   4 segunda tex  Trabajo SIA           Javadoc   47 Search C  Progress   EJ console   3   O Emortog   7 0  d01 8 s 0  tat en       BE or B   r4 SN  org gcn pinguaplugn     pdflatex exe   am Files MiKTeX 2 7 fonts typel bluesky cr   E    s  H Q 4p  pdflatex exe   2  7 fonts typei bluesky cm cmitti0 pfb    C    0     pdflatex exe    bluesky cm cmmilD pfb    C  Program Files 1   f  Se 3E  amp   pdflatex exe   S pfb    Ci Progrem Files MiKTeX 2 7 fonts i   Nodwngesm9W         pdflatex exe   Files MiKTeX 2 7 fonts type1 bluesky cm c    Jorg ocn plnguaplugn     pdflatex exe    fonts typel bluesky cm cmrS pfb    C  Progr          IR tesis tex 196 26 04 09 20142 manu  8   plinguaCoreplugin  Software Projects Software Projec  EI plinguaCorePlugin copy  88 JE  plinguaCoreTests  Software Projects Software Projec   EE   plinguaCoreUnchangedPluginsafetyCopy  A Primero pl        amp  JB Proyecto pdflatex exe   ky cm cmr 7 pfb    C  Program Files MiKTeX 2    Ex prueba pdflatex exe   C  Program Files MiKTeX 2 7 fonts typel b   dt PruchanbstractFactory pdflatex exe    MiKTeX 2 7 fonts type1 bluesky cm cmsy  1     Proebetrlaces  pdflatex exe    typel bluesky cm cmtilO pfb    C  Program I   E1 Prusbasinglston pdflatex exe   m cmtt10 pfb gt        9 Trabajo  SIA    pdflatex exe   Output written on memoria pdf  65 pages       pdflatex exe   Transcript written on memoria  log              
6.         15  Left click on the button OK     Once the steps listed above have been followed  the computer is ready to  execute pLinguaPlugin       Part II    Use of pLinguaPlugin    27    pLinguaPlugin   offers several services to the user  such as compiling o sim   ulating P systems  Next  each one of the services is described  as well as the  way to access them     28    Chapter 1    Project creation    For using pLinguaPlugin    the first thing to do is to create a project  A project  is a work directory on which P systems related among each other which will be  used for an specific purpose will be organized  To do so  left click on the option  File on the main menu of Eclipse        File Edit Source Refactor Navigate Search Project Run Plingua Latex LatexSymbols Window Help    BHO SOP iw iF BBBBRBBR       nr j    B dq  aussen 1317 TE M memorare gu n   fj bude  pg 196 26 04 09 20 42 manu men   u  encontramos la opciV  o n  textit Project  ldots   All ACERT OO  S cajero pg 19    begin  center     fj cartero jog 195  inoludegraphios width 10cn    imagenes menu_new  jpg  E       d pLinguaCorePlugin  softy        plinguaCoreTest           Beous5590uq                  fj chimenea pg 196  T case_asociacon ipg 196 26 04 09 20 4  Fi componente jpg 196 26 04 09 2        fi composicion jpg 196 26 04 09 20 42 mam     f creacion pg 196 26 09 09 20 42 manu  78 Edpse  PS    f empresa jpg 195 26 04 09 20 42 manu  S enlace jpg 196 26 04 09 20 42           fi eranio_UML jpg 196 26 04 09 201
7.      Platfoi  Refactor Navigate Search Project Run Plngua Latex Latex Symbols Window Help                                                                                   asc  E OTE g icmo9  is Ps IPPPPPP x  S Modeling   c ana I  memoriatex 22 Bom VS EA NA   subsection Creaci   o n de proyecto         Bes  Para utilizar  textit pLinguaPlugin   lo primero que hemos      ew  Vemph proyecto   Un proyecto es un directorio de trabajo en     sev Lesh organizaremos los P sistemas relacionados entre s   i  que v      BS    he para un determinado fin  Para ello  accedemos a la pestal ns     E  Biene ut   Mextit File  en el men   u  principal de Eclipse  2 reni     2   hegintcenter        amp  G tino     amp  Gum  F2  includegraphios  vidt i  20cm     magenes Eclipse jpg     0 Ecipse     Refresh 5  end center  Er pings      Observamos que aparece un men   u  con distintas opciones  I    men   u  situamos el cursor en la opei   o n  textit New   4 8    observamos que se abre un nuevo men   u   Dentro de este nue     Switch Workspace  gt  encontremos la opci   o n  textit Project  ldots   Al selecci    peses que se abre una nueva ventana   Ba Import    En esta nueva ventana  accedemos al men   u   textit General_    LA pot    men   u   observamos que existe la opciV  o n Mextit Projec          Seleccionamos esta opcil  o n y pulsamos sobre el boti  o n      Properties Akt Enter dentro de la barra inferior de la ventana  B  1 memoria pdf  org gen plnguaplugin           2 pingus_2_0 tex  
8.      This window contains several fields  options and buttons     File  menu This field contains the typical actions for handling files  Inside  this menu  there are different buttons     Open file     This button opens a file which contains a simulation and  loads it on the simulation console  so that the simulation can be  executed  The P system simulation files have the file extension  sim   For properly loading a simulation it is necessary that the file which  encodes the P system to simulate  on XML format  is on the same  directory than the simulation file     Save  This button saves the current simulation on the file specified by  the last route for the simulation file selected by the user     Save As  This button saves the current simulation on the file specified  by the new file route selected by the user  along with the simulated  P system on XML format     Current configuration  This field indicates the number of the current con   figuration of the simulation     Show current configuration  This field displays a graphical representation  of the current configuration of the simulation     Steps limit  In the case that this option is enabled  this field indicates the  maximum number of steps that the simulation can take before stopping  or reaching a halting configuration     Time out limit  in milliseconds   In the case that this option is enabled   this field indicates the maximum time  in milliseconds  that the simulation  can take before stopping or reaching a ha
9.     6  Left click on the option File Associations  which is insi de the menu Edi   tors  A list of the file extensions recognized by Eclipse is displayed        Preferences    type filter text    General     Appearance  Capabilities  Compare Patch  Content Types  Editors  File Associations  E  Text Editors  Keys     Network Connections  Perspectives  Search  Security  Startup and Shutdown  Web Browser  E Workspace    Ant  ANTLR Editor  ATL  Buddies     CDO    Coloring Editor    Ecore Diagram     Ecore Tools Diagram  EMF Compare     Help     Install Update    Java     JET Transformations    Lisp   1 Metrics Preferences     Model Validation     ORB Studio       File Associations    17       See    Content Types  for content type based file associations     File types          4gl      ada       adb      ads  O tas      asa  PIN  asd      asm    asp           A   awk        ei       Associated editors     Add       Remove       de  emfdiff Editor  default      coo Editor             Add   Remove    Default       e Left click on the button Add     A new window with the field File Type  is displayed        7  Tf the file extension   pli does not exist  follow the following steps     on the top right part of the window     18    Preferences       Add File Type    Define a New File Type  Enter file type to add     doc or report doc for example           e Introduce the extension   pli on the field File Type  and left click on  the button OK     Preferences    Model Validation    ORB
10.     u   a  E G tmp    arbol membranas eps 15   ena  itemize  e    celula eps 196 26 04 09 B   estructura entorno externo eps 195 26 04 0920    Uma vez efectuados los pasos de cualquiera de las opciones ev  8 imagenes rar 196 26 04 09 21 05 manu       3  7  memoria  pdf   zz e O asp     FR memoria tex 213 2 05 09 16 21 manu   toreros Ile  gt     ee   G Jevadoc  47 Search     Progress   E Cons Qjenoriog     B aea g  s s   ese Be BE   of B  137   Goro oenpinouapkgn    AB tesis tex 196 26 04  g  mods        nguaCorePlug  Software Projects  software Projed       plinguaCoreplugin copy  E G plinguaCoreTests  Software Projecte Software Proje  E 1  puinguaCoreUnchangedPluginsafetyCopy   I Primero pl     fp prueba      Gi PruebaAbstractFactory          Fichero pli  pSystemProject src    TD     end center    item Seleccionamos con el bot   o n izquierdo del rat   o r                      Ellenguaje UML  Eclipse     Pingus   i   9 plinguacore    amp  9 pungusPlugn                          No changes in    SVN    org acn plinguspluoin                     Once the steps of any of the options above have    creation window appears       New Simulation   Fichero  pli    been followed  the simulation       Select simulation features    Select the simulation type  its allowed operations and the file where it wil be encoded in    Avallatle simulators     transition         t    oO    Allow steps back  Allow alternative steps    Open simulation console          Select fle    Browse             F
11.    9  E Ey tmp donde vamos a crear el fichero P Lingua  Este directorio c    E  memoria aux   encontrarse dentro de un proyecto con naturaleza  textit r    memoria log    f   El memoria out  f Posteriormente  accedemos a la pesta  na llamada  textit r      arbol membranas eps 196 26 04 09 20 42 me men   u  principal de Eclipse  Dentro de este men  u   s    ella eps 196 26 04 09 20 42 manu aparecerl  a  la ventana de creaci   o n de ficheros P Lirw   structura entomo externo eps 196 26 04 05     j  gt     imagenes rar 198 25 04 09 21 05 manu     e        5 ve  7  memoria  pdf  E entm s gt  Sla   m  Ei memora tex 212 2 05 09 13 49 manu              T perftex 196 26 04 09 20142 manu   2evadoc    search  E Progress   E console 23      rrortog  oms 2     EB plingua_2_0 tex 195 25 04 09 20 42 manu Te Cw SB r  Ele ci  SYN  ora gen plingueptagin      sistema p eps 195 25 03 09 2042 manu     al  B     f tesis tex 196 26 04 09 20 42 manu EA    pUnguaCorePlugn  Software ProjetsSoftwere Pr a  I plinguaCorePlugin copy pEss EP  5 ij plinguaCoreTests  Software Projects Software Pre   ES  8 123 plinguacerelinchangedPlugnSafetyCopy a  EI Primero  pl  E i prueba  EI PruebanbstractFactory  EI Pruebafnlaces  E   Pruebasinglton  a P psystemproject  om          3 Trabajo SIA a all      1  gt     ip src  pSystemProject        This directory should be inside a project with a P Lingua nature assigned    Then  left click on the tab called P Lingua on the main menu of Eclipse   Finally  left click on t
12.    erm    E E Refactor Alte Shi T   je  4 Search  G Progress   El console  amp 2      Error Log  Jus  80s 2      sister ies Import    w BE r  Br 197 SN Gora gen pinguaplugin     H u M tesisi ach Export  g  SERA     Ban coy    2  lan ERN DIETIE   st plinguas n Woe a A  2 Es d No changes in    SVN  eda Run As  Jorg gcn plingueplugin   ero  As  Bun   CM  Prueba Team    eb  compe wai    jal Pruebas Penlace weh  SP psytent Pina   B o se    Properties Akinter    TE   E  9 Trabajo SIA   a E  m Fichero pli  pSystemProject src       Then  a new menu appears  Inside this menu  roll over the option called  P Lingua  Then  a new menu appears  Inside this menu  left click on  the option called New Simulation     57    58    CHAPTER 6  SIMULATION CREATION       File Edit Source Refactor Navigate Search Project Run P lingua Latex Latex Symbols Window Help                      ri  E ER ER O ii ia PI  BEREBER OE  gt   E eoo aw db nodis  7 Gi  fh  memoria tex S7 D actionsupporterjava   U  PsystemWzardparamat      GSE oS CO Er mu cB   Stare Projects Al a       EI com pinguaplugin auxliary       fs  com qualityeclipse favorites  Software Projects Softw   I com qualtyecipse favorkes test    Para crear un simulador capaz de simular el P sistema codifi  debemos acceder a la ventana de creacil  o n de simulaciones  esta ventana existen dos opciones       FQ 3  Preamble      lenguaje UML             El Compatib  ty    begin  itemize   i  VE copia Mtem Seleccionamos con el bot   o n derecho del rat   
13.    x exe   m cmtti0 pfb     x exe   Output written on memoria pdf  73 pages       exe   Transcript written on memoria log        Roll over the option P Lingua  Then  a new menu appears     39    40                                    CHAPTER 2        P LINGUA FILE CREATION                                                                                           J BEBREB Elg Java   ei  ib Modeling       E18 memorate 257 dh org ocn plinguaplugi    J  SimulatorFeatureswiz    2 SO  son SO mErRENmE 7B  7 Al  ficheros P Lingua  Para acceder a esta ventana existen tres    ACERTE Qe   fi plngua PG 212 2 05 09 13 49 manu     9 A  Fi project general JPG 205 2 05 09 11 55 m  gt  begin  itemize     FH project  JPG 205 2 05 09 11 55 manu  item Seleccionamos con el bot   o n derecho del rat   o r   B S da Preamble   f proyecto completo  PG 212 2 05 09 13 4 en el que vamos a crear el fichero P Lingua  Ba Jaen  Fi proyecto con sepa 212 2 05 9139     Este directorio debe encontrarse dentro de un proyecto cor   aih Ecos  FB apap uses Gis E eec an NE EL  B Preantk         Pingus   fi proyecto  seleccionado  PG 212 2105 09 1 Wegin center  B 0 Ellengue       O plinguacore   f psystemprofect_ reach JPG 205 2 05 09     Vincludegraphics sidth i  cs timagenes proyecto creacion   Edpse     plinguaPlugn  I New p   endicenter   item a Plingua  y m _      Situamos el rat   tojn sobre la opci   o n  textit P Lingy     3  plinguac     Open in New Window que aparece otro nuevo men  u   5 0 pungua  Show In Ak
14.   EH org gen plinguaplugin copy2 7 n      Bi oro gon pinquaplugn copy   saya  Search  progres   E console 33   Jerrertog  0 ESCHE  EI org gcn plinguaplugin copyS  Be Gy BB rt Be p  Slata ach gina uapkian  usn  EI org  gen plinguaplugin copy        go mo       E  e org  gen  plinguaphugin memo  Software Projects Softw  a plinguaCorePlugin  Software Projects Softmare Proje  YI plinguacoreplugin copy     pinguacoreTests  software Projets software Proc       129 plinguaCoreUnchangedPluginSafetyCopy  EI Primero pl     B  prueba  EI PruebanbstractFactery  EJ PruebaEnlaces   ES 32  Pruebasingleton  P psystenProject   SS Trabajo SIA         No changes in SUN   Jorg cn plinguaplugin              lt     D                            Wae  me  sens       In order to avoid potential pitfalls  it is recommended to create a directory  called src inside the project created  This directory will contain he files and  subdirectories which contain the P system specifications  In order to do so   right click on the project and access the menu called New        File Edt Source Refactor Navigate Search Project Run P lingua Latex Latex Symbols Window Help   rin a BeOS sk B   O Q  5mmg  904  i3  9  4  PPPPPP  Sor i Bao Ww    AE    Z E E  tmemseter 23  gt  dborgompinguanior    simdstorresureswie    Safe 0 38    n        1d com EE uv n EE ecionemos la opciV   o n  textit                                           EI com pings ilar a    e ste  En este men     Go Into r s  68 ii com qualty   eot os el bot 
15.   Select destination file  This field indicates the route of the file where the  result of the file export will be encoded     Once the paramters of the file to export have been selected  left click on the  button Finish  Then  the file resulting of the export of the original file will be  created on the route specified on the P system file export window     Chapter 6    Simulation creation    For creating a simulation capable of simulating a P system encoded on a file   The simulation creation window has to be accessed  There are two options to  access this window     e Right click on the file whose P system is going to be simulated  This file  has to be inside a project with a P Lingua nature assigned  though it  does not have to be encoded on P Lingua format necessarily  Instead   it is enough for it to be encoded on any input format recognized by  pLinguaCore                                                      Java   org gcn plinguaplugin memo memoria tex   Eclipse Platform  File Edit Source Refactor Navigate Search Project Run P Lingus Latex Latex Symbols Window Help  ri  E Bo Deis Bik 0 qQ   88 0  iii BBBBBR Blg wa  i  po  2 Bldg i Modeling    E Package Explorer  53   E JM  memoria tex ES    actionsupporter java    P  PsystemwizardParamet     RAEE my   B  sit com gcn piinguaplugin test   de un proyecto con naturaleza  textit P Lingua   aunque no eA  a  ARNO  I con plingueplugi aulary  encuentre en formato P Lingua  basta con que est  e  codifi  e a 3  i fi com qualtyec
16.   gt  i0  seleccionamos la opci  to n      mix   IT jem   Una vez hemos escogido la opciV  o n anterior  E  amp     nst  Gy ty EB COPY SHE lentana de creacil ic n de ficheros P Lingua  e    KE Copy Qualified Name E  E  B Paste Coley Is con el bot   o n izquierdo del rat   o n el directorio       M Delete  Delete el fichero P Lingua  Este directorio debe  E de un proyecto con naturaleza  textit P Lingua    B   a E  e BuldPath        Sin Refactor AST       Em EE  in se  gt   in   a inet           I      p td Export     77 Search E Progress   E Console 22    J Error Log D Jdus 8 s zs B  a ieu    Ca BE rt Be r    SN Gone  GUCKEN     Assign Working Sets  exe gt  am Files MiKTeX 2 7 fonts typel bluesky cr   g1  m  M 2   E    QUE  exe   2 7 fonts typel bluesky cm cmitti0 pfb    C         izy pling Add Remove Lisp Nature   exe    bluesky cm cmmii0 pfb    C  Progrem Files l pg    Wl pling Runas  BH PUG Debug as    Eng Team  a Comox Wh  FE promt Restore from Local History   i Prost Database  E pro Pingu  SP psys properties AksEnter          src   pSystenProject       x  x   x exe   S pfb    Ci Program Files MiKTeX 2 7 fonts t   jo changesin SUN  x exe   Files MiKTeX 2 7 fonts typel bluesky cm c    forg gcn plinguaplugin    x exe    fonts typei bluesky cm cmrS pfb    C  Progr   x exe   ky cm cmr7 pfb    C  Progrem Files MiKTeX 2   x exe   C  Program Files MiKTeX 2 7 fonts typet b    x exe    MiKTeX 2 7 fonts typel bluesky cm cmsy      x exe    typel bluesky cm cmtiiD pfb    C  Program I
17.   o n  textit Finish   EI com quaity Open in New Window   B Package ri  a  aparecer el directorio Vt  AI Compatibil show In Akesh  tewr  arc ficheros P Lingua  ENSURE ME  lee      6 cass Edpse    HS   pat gua debemos acceder a la ventans pingue    BI copy of or EB Copy Quaified Name 3 Source Folder jeder a esta ventana existen tres Hingustore  58 fl currentaul  Paste cule     rum   puingusPlugin    Delete  E Annotation  ees it Test Case bot   o n derecho del rat   o r  BA RESY nContext CUNAS posi hero P Lingua  Este directorio c  BA Pugin Budd Path re losecto von naturaleza QUINA  LITE Refactor Akeshfter      Gi Folder nuevo men   u   Situamos el rati  E Eg icons   lt       E fie la   Observamos que aparece otro  Agi pir Import    Tere este men   u   seleccionamos la  dne    Bier vez hemos escogido la opci    0      E  s r le creaci   o n de ficheros P Lir se   BES Raten PS  Dl other    cue y MT  Gy METAR  Open Project Seleccionamos con el bot   o n izquierdo del rat    c    Ser  j  ma Close Project j      ee  buldp Close Unrelated Projects SEE LIS  plugin  Assign Working Sets    IE  gt   Bi organ em     ET  s  eae Addfemove Lsp Nature Search C  Progress E  Console 13     Eror Log  oms s  o    l org ac pi M Add Perl Nature    X  IS  N  org acr ping y  gt   E ll          xt    i ect  dg Sje   63    Exe   lt imagenes psystemproject jpg  1d 543  867       E  p xe     use imagenes psystemproject 3pg      ef  aS   ah   a   gt  be   Underfull  vbox  badness 1424  has oceurre   yoch
18.  20 42 manu  1 estructura entorno externo eps 195 26 04 09 20   B imagenes rar 198 26 04 09 21 05 manu     memoria pdt  ly memoria tex 213 2 05 09 16 21 manu      perfil tex 196 26 04 09 20 42 manu  BB pingua_2_0 tex 196 26 04    sistoma p eps os 2  Bi tesistex196 2  E G plinguaCorePlugin  Software Projects Software Projed  EI p  nguaCorePlugin copy     68 ji  plinguacoreTests  Software Projects Software Protec      15 plinguaCoreUnchangedPluginSafetyCopy     Er Primero    oe ig prueva  EI PruebaAbetractFactory  T   PruebaEnlaces    Pruebasingleton  e P psystemProject  BG sc  E    9 Trabajo SIA    Software Prd       6104709 20 42 manu                       Finally  left click on the    option    p ita  iP BBBRBR       Bier       uevo men     u    e  begin  center   Vincludegraphios  vidth 10cm   imagenes menu_exportacion  j  Vend  center   Dentro de este men   u   seleccionamos la opcil  o n  textit   item Seleccionamos con el bot   o n izquierdo del rat   o r  queremos exportar  Este fichero debe encontrarse dentro  de un proyecto con naturaleza  textit P Lingua   aunque no e  encuentre en formato P Lingua  basta con que estl  e  codifi  formato de entrada o salida reconocido por Vtextit pLinguaCc  Wegin center    includegraphios width 10cn   imagenes seleccion fichero   Vena center   Posteriormente  accedemos a la pesta  na llamada  textit P L  este men   tu      Tm    Too Dn DEUEEIDXS DIY EFCDID D     end  itemize     H  gt                 Ys Hierarchy 2      EP new simula
19.  BRBPPPP                                                                                                       o  EEEE      amp   amp  v 7 TOM memoriatex 22  gt  db ora gen pinguaplign   D  ActionSupporter  java    1d com gen pinguaplugin test Softwere Projcts Softwa        subsection Creaci    o n de ficheros P Lingua   I com pinguaplugin  auxilary     ig com qualityeclipse favorites  Software Projects Softw4 Para crear un fichero P Lingua debemos acceder a la ventana  EI com qualtyecpse favortes test de creaci   o n de ficheros P Lingua  Para acceder a esta ve  EI Compatib  ty tres opciones        Elenguaje UM   2 copa    0 Edpse  EI Copy of com gcn plinguaplugin    begin  itemize  HEIL TUA    l Copy of ot mo erri inne y Aatem Seleccionamos con el bot   o n derecho del rat  o r       pinguacore  SE ent   he vamos a crear el fichero P Lingua  Este directorio c  amp    pLinguaPlugin  E y or9 927 0 Open in New Window ntrarse dentro de un proyecto con naturaleza  textit F  Woggnp show tn MPEG    Ervamos que aparece un nuevo meni  w   Situamos el reti  El oo gpl        o n  textit P Lingua Plugin   Observamos que apare  E org gen pl Quac o men   u   Dentro de este men  u   seleccionamos la  organ  Es Copy Qualfied Name itiNew P System   Una vez hemos escogido la opciV  o   as iti Paste at ecer   a  la ventana de ereaci   o n de ficheros P Lir  E  3 plinguace  EI punquace I Delete Son Seleccionamos con el bor   o n izquierdo del rati  c  d   ance  s ence  gt  m vemos a crear el f
20.  Debug As     Team    Compare With      Restore from Local History   Database      G P ioo syer all   lt  PDE Tools P new p system                               Tr ec pem    IP Addjremove P Lingua project nature           Inside this menu  left click on the option Add Remove P Lingua project  nature  Once this action has been executed  press F5 on the keyboard    Then  the projects acquires the following icon as its image     P    CHAPTER 1  PROJECT CREATION    e Left click on the project which is going to be assigned a P Lingua nature   suitable to work with P systems        Fie Edt Source Refactor Navigate Search Project Run P lngua Latex LatexSymbols Window Help    iM HO  E LEER Bit O OS AI ES TNT  i por Bldg    B     w 7 FF  Bi memoria tex ES  gt  Gb org gen pinguaphigi   D  SmulatorFeatureswie        a  i ox   amp  15 com gcn plnguaplugin test  Software Projects 5oftwal Situamos el rat   o n sobre la opci   o n  textit P Lingue A                                                                   I con pinguaplugn auxiery  aparece otro nuevo men    u       Es  com qualityeclipse favorites  Software ProjecisiSoftw   EJ com qualtyecipse Favorites test Dentro de este men   u   seleccionamos la opcil  o n  text _ Preamble  E  Compatibaty P Lingua project nature   Una vez hemos escogido la opei     6 0 Henua UML  E copia que deber  i a aparecer la siguiente imagen como icono de       Eine  I Copy of com  gcn plnguaplugin 5 Wegin center  Preambi    5 0 Pingus  EI Copy of ora gen
21.  Studio  Perl EPIC    Plug in Development  ci Run Debug   amp  Soyatec             8  Left click on the extension   pli on the list which appears on the top right  part of the window     20       Preferences    type filter text    E General  it  Appearance  Capabilities  Compare Patch  Content Types  Editors  File Associations      Text Editors  Keys     Network Connections   Perspectives  Search  Security  Startup and Shutdown  Web Browser  Workspace   Ant   ANTLR Editor   ATL   Buddies   CDO   Coloring Editor   Ecore Diagram   Ecore Tools Diagram   EMF Compare   Help   Install  Update   Java   JET Transformations   Lisp   Metrics Preferences   Model Validation   ORB Studio   Perl EPIC   Plug in Development   Run Debug   Soyatec   Tasks   Team   Texlipse   UML   UML2 Diagrams   Usage Data Collector    El  E   El  El    2H bE Eh oe    9    File Associations          See  Content Types  for content type based file associations   File types        TA   odd      orx    p     pas  CB   patch   amp 9  pdd  9   php  Qj   php3      php4      phtml       Associated editors        P Psystems Editor  deFault              Remove    Default          9  Left click on the button Add     A new window is displayed     on the bottom right part of the window     10  Left click on the option Internal Editors on the top of the new window     21    Preferences    type filter text   File Associations    E General      Appearance  Capabilities  Compare Patch  Content Types       Editors   File Asso
22.  To   T sp   To   To   Dao tan   Ta Too   Ti  y Faja     C fus  7  am aa       On the middle bar there are different tabs  Among them  there are tabs  which display the set of rules of the P system simulated  its alphabet  its starting  multisets and the environment of the current configuration                                                                          Ba Ca Fo fao His Ca Toya Ca Paya Ca Iss      r  6 Tos  2 2 2   gt   gt   Taz Ca Baz far Hs Ca hsz Ca hz Ca Paz Fara  a  7    2 a N   gt  2  Ti Cs T2 Cr Maia Cs fio Ca Co fon 6 Tia Cs  2   gt    2 2  B2 Ca Taya Cr Tia Cs i Ca Ti Ca Tz Cr  rm  2     2 2  I ha sp To To Ta Top Tai Too Ti  a Liga Ci     fu  7 s  au lau a       Besides  if an element of the right panel is selected  the objects of the multiset  associated to its corresponding membrane are displayed on the multisets tab of    the middle bar     66    CHAPTER 7  P SYSTEM SIMULATION       merbrse D 0  Label 1  Charge  1              mamans Obras      Haan 322   e1                                                                       Paz Ca Tan Pa iz Ca Ts Ca I2 C2  e  Toi  2 2  d  Taz Ca Bie Tag Ton Ca Faz Ca Tas Ca  c  2  gt        Tae Cs Tan     Tii Ca Tia Ca   Ca fan   6  Rn Ca  Ax 2 a  2  Taz Cs Ha 6 Ti Ca Tia Ca Ti Ca Taya Ci fis                 P 2 d  Thue Paso fap ho N Pago Paso     Tajo Too     To  Tan     Coo 6             The right panel displays information about the membranes which compose  the current configuration  This way  for each membrane 
23.  Trabajo SIA  s  T    Iv    src  pSystemProject       men   u  principal de Eclipse  Dentro de este men  u      aparecer   a  la ventana de creaci   o n de ficheros P Lir    E            a   Te Hierarchy 53                 savadoc  47 Search  C Progress   El Console 13    JEmer u    Texlipse              No changes in sun   forg  gcn plingusplugi       Then  a new menu appears     Inside this    menu  roll over the option P     Lingua  Immediately     new menu appears  Inside this new menu  left     click    Import P System     on the    49    option    50    CHAPTER 4  FILE IMPORT       File Edit Source Refactor Navigate Search Project Run P lingua Latex Latex Symbols Window Help   PO MO  Bein  ER O O ETS  CEN E E  i J  er Bldg      Ja 88 s 7 DI memorate 23   actionsuporter java   DI PsystemwizardParamet    1  com gen pinguaplugin test  Software Projects Softwa    s   BEREBER            F                                                                   E com plinguaplugin  auxiliary    begin  itemize       ig com qualityeclipse favorites  Software Projects Softw   item Seleccionamos con el bot   o n derecho del rati  0 n e  T com qualtyeclipse favorites test que queremos importar el fichero  Este directorio debe encor  WU Compatib  ty proyecto con naturaleza  textit P Lingua     SE copia     begin center    LL   8 rue  EI Copy of com gcn plinguaplugin  Vincludegraphios  vidth 10cm   imagenes seleccion director    PreambkA       8 P Ungua  Cont New     VWend center   item En
24.  cmsy7 1  l gs Laus  pesky em cmti10 pfb gt  lt C  Program I  bd de fb    5 Bossa tten on memoria pdf  72 pages       Bai Rexe Transeript written on memoria  log        i  3 Trabajo SIA Y   lt     gt    E  pe src   pSystemProject       Inside this menu  left click on the option New P System  Once the for   mer option has been chosen  the P Lingua files creation window appears     e Left click on the directory where the P Lingua file is going to be created   This directory should be located inside a project with a P Lingua nature  assigned        Fie Edt Source Refactor Navigate Search Project Run P lingua Latex LatexSymbos Window Help    AER Bein  ER O ER CE iB iF BBRBPBPP    oo a8        Em      di Moseing       CTE     fg com qualtyecipse favorites  Software Projects so 4  11 com qualtyeclipse favorites test      E id ora ocn pinguaphan  software Projcts Software  EJ org gcn pinguaplugin copy2    0  arbobmembranas eps 196 26 04 09 2042 me  y celua eps 195 26 04 09 20 42 manu   1 estructura entomo externo eps 196 26 04 05    imagenes rar 198 26 04 09 21 05 manu          BB ningua 2  O tex 196 26 04 09 20 42 manu   Q sistema p eps 196 26 04 09 20142 manu   BB tesis tex 196 26 04 09 20 42 manu     E plinguacorePlugin  Software Projects  Software Pr    l pnguacorePlugn copy    ES o plinguaCoreTests  Software Projects Software Pre   68 12   pnguacoreUnchangedPluginsafetyCopy  1G Primero pl   E B prueba   T5 Prueba  bstractFactory   Y PruebaEnlaces   E Prucbasingleton     P psyst
25.  cmti10 pfb    C  Program I  iL Misit d pdflatex exe   m cmttiO pfb      amp   Trabajo SIA J    pdflatex exe   Output written on memoria pdf  65 pages   paflatex exe gt  Transcript written on memoria  log                          alle j       ip memoria  pdf   org gcn plingusplugin memo       Then  left click on the menu called New inside the menu mentioned above   Then  a new menu appears                Fi Project                                            aan Una  n  eo   0 n de proyecto     Grks 6 interface it pLinguaPlugin   lo primero que hemos     3 Source Folder proyecto es un directorio de trabajo en  cobshies     enum sistemas relacionados entre s   i  que v  P    annotation fin  Para ello  accedemos a la pesta  ne     Bf ie i men   u  principal de Eclipse   Move    E  Rename     3 panray dth 10cm    imagenes Eclipse  jpo    amp  Refresh F5    Convert Line Deimters To ece un men   u  con distintas opciones              ern u 3 dche10cn   4magenes menu file jpg      Sitch Workspace  Restart  u  situamos el cursor en la opeiV  o n V  hacer esto  observamos que se abre un nuevo men  u   Dentre  diss Import  encontramos la opci   o n  textit Project  ldots   Al selecci    A Export    que se abre una nueva ventana   Properties Alt Enter    En esta nueva ventana  accedemos al men   u   textit General  menV  u   observamos que existe la opcil  o n Vtextit Projecv           Doo ENUD  XUD UID EDD S    1 memoria pdf  org gen plinguaplugin                                       
26.  memo                               Inside this menu  roll over the option New     After doing so  a new menu appears  Inside this menu there is an option  called Project         Platform                            L E       PI  BBBBBB ES   amp  dave                                            Open Fie  TA project ir Modsing  Close  Crw di Padas      oe        lose AN HSW   class Bra zen Bion   Bes nn      Pct   o n de proyecto     lose   ew  Hse hs   At pLinguaPlugin   lo primero que hemos     ware  x  Save As    3 Source Folder proyecto es un directorio de trabajo en       2  a G trn sistemas relacionados entre s   i  que v   BUS   rete        Annotation fin  Para ello  accedemos a la pesta  ne     6 0 Ellenguaje UM                     men   u  principal de Eclipse         9 Edese  os ES wna Test Case Ei Preantk     9 purge  E S   ellen    Rename    r2 matat dehei  en    imagenes Eclipse  jpo  8 a   29 anoncon     Refresh FS C Folder Eee    O p  nguaplugn  Convert Line Deimters To    ES Fle ece un men   u  con distintas opciones  pie  r    plinguar  dem  ec  Gchesoen   dmagenes menu   i1e  jpg  B  os  Switch Workspace N FS other    BOT  E  u  situamos el cursor en la opcil  o n V  estar  hacer esto  observamos que se abre un nuevo men   u   Dentre  diss Import    encontramos la opcil  o n  textit Project  ldots   Al selecei  EA Export    que se abre una nueva ventana   2  Properties AksEnter En esta nueva ventana  accedemos al men   u   textit General       memora pd  oro ge
27.  plinguaplugin copy3  includegraphios  imagenes plingua ipg    20 Ellengu  56 3d  currentGUIO6 10 08  Software Projects Software Proj Yend center  5 9 Eclipse 0 pungusPlugin  E id org  gcn inguaplugn  Software Projects Software Prd Vitem Seleccionamos el proyecto al que queremos asignar le   9   Plngua   HE Referenced Libraries Mtextit P Lingua   adecuada para trabajar con P sistemas     iG plinova  E B   IRE System Library Davasc 1 6  Posteriormente  accedemos a la pesta  na llamada  textitir        plinguat    3  Plugin Dependencies men   u  principal de Eclipse  Por V  w ltimo  seleccione    EM  end itemize     icons Il  i  pingue gf 210 2 05 09 13 09 menu al   i Psystem JPG 153 31 03 09 13 53 manu  sample  gf 153 31 03 09 13 53 manu a     Fj Smultor 1PG 153 31 03 09 13 53 manu Una vez realizadas las operaciones anteriores  ya disponemos       Ey METAINE adecuado para trabajar con P sistemas  cuyo icono es el mosty  ji MANIFEST MF 153 31 03 09 13 53 manu    M a    buld properties 159 31 09 09 13 53 manu      NT 209 2 05 09 13 00 manu We Hierarchy S Olla  gt   gen pingueplugn c          namen  6 mosca E og  E coo 3 Denrie  Iffs ea    S org acr plngueplugin copy Texipse c  Ele rj  Miloragenpinguanhgn     T   org gcn plinguaplugin copy         88            ij ora acn plinguaplugin  memo  Software Projectsisoftu   JE  plinguaCorePlugin  Software Projects Software Projed  EI plinguaCorePlugn copy    58 plinguaCoreTests  Software Projects Software Projec  58 12  plinguaCoreUnch
28.  textit General  LA Export    men    u   observamos que existe la opcil  o n Mextit Projec    Seleccionamos esta opcil  o n y pulsamos sobre el boti  o n          Properties Alt Enter dentro de la barra inferior de la ventana           1 memoria pdF  org gcn pingusplugin                       2 plngue_2 01ex  org gen pinguepl     a La    3 segunda dvi  Trabajo SIA  Te Hierarchy 3   4 segunda tex  Trabajo SIA            Javadoc      Search    Progress   E console 52     Error Log   eo B    P Pre dd Cw BE rt Gh pio SW oroigenpinguaphgn                    E tesistex 196 26 04 09 20 42 manu   BG pnguaCorePlugn  Software Projects Software Projed  I punguacorePlugn copy   5 amp  dl plinguaCoreTests  Software Projects Software Proje    129 plinguaCoreUnchangedPluginSafetycopy  EI Primero pl    B proyecto     ip  prueba    pdflatex exe   am Files MiKTeX 2 7 fonts typel bluesky cr     0  mf m 4 4  pdflatex exe   2 7 fonts typel bluesky cm cmitti0 pfb    C   pdflatex exe    bluesky cm cmmii0 pfb    C  Program Files l  pd  latex exe   S pfb    Ci Progrem Files MiKTeX 2 7 fonts t   No changesin SWN  pdflatex exe   Files MiKTeX 2 7 fonts typei bluesky cm c     org gcn pinguaplugi     pdf latex exe gt   fonts typel bluesky cm cmrS pfb    C  Prog   pdflatex exe   ky cm cmr7 pfo    C  Progrem Files MiKTeX 2   pdflatex exe   C  Program Files MiKTeX 2 7 fonts typei b       I Fructcnbstred stay  paflatex exe gt   MiKTeX 2 7 fonts typei bluesky cm cmey  l    ne i pdflatex exe    typei bluesky cm
29.  the import        Fie Edt Source Refactor Navigate Search Project Run Plingua Latex LatexSymbols Window Help                                                                                                  EN   AER Bi O RS CR TER ET BBBBRB  i eer H 3 a  BS  amp  7 TAT  memoratex 93   lb org gen pinguaplugi    1  SimulatorFeatureswie       com qualtyecipse favortes  Software Projects 5o A  Observamos que aparece un nuevo men   u    EI com queityecipse favorites test e  beginicenter   BI Conpatbity Vincludegraphios sidrh i065  imagenes proyecto creacion   B cope   Vendicenter   EJ Copy of com gcn plinguaplugin    Situamos el rat   o n sobre la opei   o n  textit P Lingy  EI Copy of oro ocn pinguaplugin copy   que aparece otro nuevo men   u   al     Jj  currentGUID6 10 08  Software Projects Software F  gt   begin center  El Preambl   PAingua   68 i org cn  plnguaplugin  Software Projects Software     includegraphios vidth 10cm   imagenes menu_plingua creac     G Ellengw     9G ptinquacore  EJ oro cn pleguepkugn copy    ena center  tdpse        plinguaPlugn  EI org gen pinguaplugin copy4 Dentro de este men   u   seleccionamos la opcil  o n Mex   PAngua   EI org 92n pinguaplugin copyS   P System   Una vez hemos escogido la opcil  o n anterior       O p  ngusc  Al org gcn plnguaplugin copy   ventana de creacil  o n de ficheros P Lingua    89 uo  il org gon plingueplugin memo  Software Projectsjso    amp     Cg imagenes  item Seleccionamos con el bot   o n izquierdo del rat   c    
30.  window needs to be  accessed  For accessing this window  there are three different options     e Right click on the directory where the P Lingua file is going to be created   This directory has to be inside a project with a P Lingua nature assigned   Then  a new menu appears        Java       Fie Edt Source Refactor Navigate Search Project Run P Lingua Latex Latex Symbols Window Hep                                     mx Bein  Bi  0 q  B amp  amp gGg  imo ri BBBBBR Ei   amp  Java     i  nor SB ij Modeling  dB Packageexpkren ii  E15 5 7 7 DV memeriatex ES  gt  Gh org geniplinguaplug   D SimuatorFeatureswWie       o Ne 20   it com qualtyeclpse favorkes  Software Projects so A Amos con el bot   o n derecho del rat   o n el directorio AM 7    9 Oe eS  EI com quaityedipse favorites test a crear el fichero P Lingua   Bj Compatib  ty debe encontrarse dentro de un proyecto con naturaleza  text       copia aparece un nuevo men   u   preme  EI Copy of com gcn plinguaplugin  er  lenguape Ler   BI Copy of ora grn plinguaplugin copy3 los  width 10cm   imagenes        20 Edpse     15 currentGuIo6 10 08  5 PreamblcA    5 O Pingus  68 154 oro gen pinguapiugn   2   e n sobre la opciV  o n  textit P Lingua   Observamos        amp  G eliengue       O punguacore  EI org gcn pingusplugin copy2 zo nuevo men    u        amp  G tcipse    piingusPlugn  Word new      80 Palingua  Boog  wit     magenes menu_plingua_creacion 3pg  B lingual   org Open in New Window a pplinguaF     hora Showin AkaShift w
31. 42 mar            aerario pg 196 26 04 09 20 42 manu   Fi herencia jpg 196 26 04 09 20 42 manu     Fi implementa  jpg 196 26 09 09   fi menu fie  JPG   FH menu new  PG    f muta pg 196 26 04 09 20 42 manu   fi project  general  JPG   FH project IPG    FH puerta jog 196 26 04 09 20 42 manu   fj simbolo_creacion ipg 195 26 08 09       42   fj simbolo  lmada jpg 196 26 04 09 20 42          Fi UML gerersipa 155 26   fj verbe  secuencia pg 196 2   Fi video  jpg 196 26 04 09    Gy tmp    Es arbotmembranas eps 196   5 celula eps 196 26 0  Es estructura entomo externo eps 196 26 0410   B inagenes rar 198 26 04 09 21 05 menu                Fi memori tex 204 1 05 09   T perfitex 196 26 04 09 20142 manu   El ingua 2  tex 196 26 04 09 20 42 manu  jj sisteme p eps 196 26 04 09 20 42 manu   Bi tesetex 196          20 42 manu          I plinguaCorePlugin copy       m        ware Projects Seftware Pr       memoria pdt   org gen plngusplugn meno             ojects Software Pri        end center     Al seleccionarla  observamos que se abre una nueva ventana      Ybegin center   Vincludegraphios  width  10cm     magenes  project  jpo    end center     En esta nueva ventana  accedemos al men   u   textit General  men    u   observamos que existe la opcil  o n  textit Projec      begin center        ineiudegrapnis  widei 10em   imagenes project_general 3pa          enatcenter     Seleccionamos esta opcil  o n y pulsamos sobre el bot   o n    dentro de    Posteriormente  encontramos un campo titul
32. Ax 2 2  Taz Cs Ha 6 Ti Ca Tia Ca Ti Ca Taya Ci fis  2 p P 2 2  Tu Toga Paso ho N Ep fo     Tajo Tuo     Tuo  E Tan Ci Cs Toga 6  e 3        The top bar displays general information about the current configuration   including its number  as well as information about the skin membrane  such  as its identifier  a number to identify membranes univocally   its label and its                                                          polarization   fuz Ca Tanz Fane iz Ca Is Ca I2 C2 Isi          amp  Toja  2 2 2      2  Tos Ca Baz Fasa Ton Ca Tja Ca hz Ca  6    gt   gt        Ta Cs Tana    i Tii Ca fiia Cs   Ca fan   6  Ta Ca  e A 2 2 2  T    Cs Ha     Ti Ca Tia Ca fin Ca Ta  Ci ris      p   3 2  T Paso Paso ho N Pago fo     Tage Too     Tho  a Tan    i exis 6  en  gt                                     A     CONFIGURATION DISPLAY    65     The left bar displays a membrane tree which represents the current con     figuration      This way  the children of a node of the tree represent the child    membranes of its associated membrane  With regard to the information dis   played on the tree  for each membrane it is displayed its identifier  its label and    its polarization                                                                          Ks Ca Po fo Ko Ca To Ca D     T4 C ra   amp  fois  2 2 R  2 2  Taa Ca Biz an 2 Ca T  o Ca Toyo Ca Pazo fio  a  amp   E 2      3 2  Rn Ca Tai Ci fiio Cs o Cs      fo Gj hn Cs  2  F  gt  2  Ts Cs Do     Tj    Cs lso Ca Tis Cs    2      rm    M    
33. E B   ORE System Library  JavasE 1 6  men   u  principal de Eclipse  Por V  u ltimo  seleccione E   plinguar   BA Plugin Dependencies Vendt itemize  Om  EM  Gy icons  If pingua gf 210 2 05 09 13 09 manu ay  Psystem JPG 153 31 03 09 13 53 manu    gj sample gff 153 31 03 09 13 53 manu Una vez realizadas las operaciones anteriores  ya disponemos   a  A Simulator JPG 153 31 03 09 13 53 manu adecuado para trabajar con P sistemas  cuyo icono es el most      E  Ey META INF anteriormente  quedando un proyecto similar a    e ste     y  jy MaNIFEST MF 155 31 03 09 19 53 manu  lt     gt    9  Ej buld properties 153 31 03 09 13153 manu       a  Ru 209 2 05 09 13 0 manu Jp Hierarchy N ajja  Frans AAA CEN  ellas Teese a E A Er rg 10200  EI org cn plnguaplugin copy  pdflatex exe   am Files HM  luesky cr   E tag org gen plinguaphugin mema  Software Projects o   sar latex exe   2 7 fonts typel bluesky cm cmitti0 pfb    C  1 iin pdflatex exe    bluesky cm cmmi10 pfb    C  Program Files 1  8 Gy tmp ex exe   5    Program Files MikTeX 2 7 fonts   I M    sree a  gt  S pfb    Ci Program Files MiKTeX 2 7 fonts t   mo changes in SN       pdflatex exe   Files MikTeX 2 7 fonts typel bluesky cm c  forg gen plinguaplugin     pdflatex exe    fonts typel bluesky cm cmr5 pfb    C  Progr  pdflatex exe gt  ky cm cmr 7 pfb    C  Program Files MiKTeX 2   pdflatex exe   C  Program Files MiKTeX 2 7 fonts typel b   pdflatex exe    MiKTeX 2 7 fonts typel bluesky cm cmsy  1  pdflatex exe    typel bluesky cm cmti10 p
34. I org gcn pingueplugin copy    20 me  ET org gen pinguapkugn copy 5 E  68 yi ora ocn pingueplugn  deh i0cw   imagenes vista_proyecto 3pg  al     f plinguacoreplugin  sc         l pnguacorePlugn copy  bemos hacer es asignar al proyecto la E    amp   d punquaCoreTests  Software Projects  Soware Pr textit P Lingus   Una naturaleza es simplemente un tipo de          e 14 plinguaCoreUnchangedPluginSafetyCopy signamos a un proyecto  Es decir  como queremos que el E  EI Primero gl   opciones propias de los proyectos de especificacil  0 n        ig prueba  lt  i  gt     EI PruebanbstractFractory p   F TEN  E  PruebaEnlaces Te Hierarchy   Olla  digs             2              2 Prusbasingleton      4   Javadoc   4  Search   C  Progress   E Console 53  JError Log E  3e  8s  3     59 Trabajo SIA Texdpse A O        EN     ora gcn plnguapluginy      lt  B  T    pSystemProject       The next thing to do is to assign a P Lingua nature to the project  A nature is  merely a kind of behavior which is assigned to a project  Hence  as the project  has to perform the proper actions of the P systems specification projects  it  should be assigned that nature  In order to do so  there are two ways to assign  a P Lingua nature to a project     e Right click on the project which is going to be assigned a P Lingua nature   Then  a new menu appears     33        File Edt Source Refactor Navigate Search Project Run P lingua Latex Latex Symbols Window Help    it  Bi ideis B Di5  0 QqQ  B5 G imo4  83 iv  4
35. MPORT    Name  This field indicates the name of the P Lingua file which will be created  as a result of the import     Available Output Formats  This field lists the output formats recognized  by pLinguaCore c  so that the user can select  from them  the file format  in which the P system will be imported  inside the previously selected  directory     Preserve Format  This option indicates whether the format of the file created  as a result of the import will be the the same as the original format or not   In such a case  the format selected in Available Formats will not have any  effect     Select source file  This field indicates the route of the original file from where  the import will be performed  This file should be encoded on an input or  output format recognized by pLinguaCore o      Once the parameters of the file to create have been selected  left click on the  button Finish  After executing this action  the file resulting from the import  of the original one will be created and displayed inside the specified directory     Chapter 5    File export    For modifying the format of a file which encodes a P system and store the  resulting file in another different file  there are two different options     e hight click on the file that you want to export  This file should be inside  a project with a P Lingua nature assigned  though it does not have to be  necessarily encoded on P Lingua format  Instead  it is enough for it to be  encoded on any input or output format re
36. Platfo     Fie Edt Source Refactor Navigate Search Project Run P Lingua Latex Latex Symbols Window Help  rini Bais ik Bi 0 Qq i  8H e iear   E Bor is TESTE    reete 15 TO D ememonatex           38 com gcn plinguaplugin test  Software Projects Softwal  EI con plingueplugn auxiiary          rip BBBBBR                 Sole    DD  PsystemwizardParamet on          DI Actonsupporter java  Wegin center        Vincludegraphics sidri 10cs  imagenes menu exportacion      g       isi com usltyecipse favorites  Software Projects Softw  end center   item     EI com quabtyecinse Favorites test    Dentro de este meni  w   seleccionamos la opea   o n Vtextit   8   E  Compatibity Mtem Seleccionamos con el bot   o n izquierdo del rat   o r   Ellengoeje UM       E copia queremos exportar  Este fichero debe encontrarse dentro Ie FO cage   T   Copy of com gcn plinguaplugin  de un proyecto con naturaleza  textit P Lingua   aunque no e 4 0   EI Copy of org gen pinguaplugin copy3 encuentre en formato P Lingua  basta con que est   e  codifi        i currentGUIDe 10 08  Software Projects Software Proj    formato de entrada o salida reconocido por  textit pLinguacc  amp  Q purgar    E Je org gcn plinguaplugin  Software Projects Softw          EI org cn plnguaplugin copy  Vitem Posteriormente  accedemos a la pesta  na llamada  text  EI org gcn pinguaplugin copy men   u  principal de Eclipse  Por V  u ltimo  seleccionamos  EI org acr pinguaplugin copys  este men  tu     I org gcn pinguaplugin copy     en
37. Pruebasingleton  S P psystemProject  Ese  68  3 Trabajo sta a   Wtbe   Insert E       41    Once the option above has been chosen  a P Lingua file creation window    will appear     e Left click on the directory where the P Lingua file is going to be created   This directory should be located inside a project with a P Lingua nature    assigned        Fle Edt Source Refactor Navigate Search Project  Seid  ISET se Bein  Bs  PENES cote a                 Bm    Run Pingus Latex Latex Symbols Window Help    0 Qq  BHC   00 F  r                amp  igi  com  qualtyeclpse Favorites  Software Projects So A      EI com qualtyecipse favorites test        Bl Compatibaty    sE copia      Bi Copy of com gen plinguaplugin  EI Copy of org gen pinguaplugin copya  58 fg currentGUI06 10 06  Software Projects Software       yg org gen pinguapkugin  Software Projects Software  EI org gcn pinguaplugn copy2      Bl oro gen inguoplugn copy  EI org gcn pingueplogin copy  EI org gcn pinguaplugn copy    E i org gen pinguaplugin memo  Software Projects S0    Cg imagenes  E Ey tmp   E  memoria aux   E  memoria log  memoria  out  y arbobmembranas eps 196 26 04 09 20 42 me    1 celua eps 195 26 04 09 20 42 manu  y estructura entomo externo eps 196 26 04 05  E imagenes rar 198 26 09 03 21 05 manu  E memoria pdf  FR memoria tex 212 2705 09 13 49 maru   BR perfitex 196 26 04 09 20 42 manu  tex 196 26 04 03 20 42 manu  veps 196 26 04 09 20 42 manu  JB tesi tex 196 26 04 09 20 42 manu  8 Jai plinguaCorePlugin  S
38. a BEA E  gt  T v   S  oraig pinguapiugin     am Files MikTeX 2 7 fonts typel bluesky cr  g    m     H  o ap  2 7 fonts typel bluesky cm cmittiD pfb    C                    bluesky cm cumi10 pfb    C  Program Files l  S pfb    C  Progrem Files MiKTeX 2 7 fonts t  Files MiKTeX 2 7 fonts typel bluesky cm c   fonts cypei bluesky cm cmr5 pfb    C  Progi  ky cm cmr7 pfb    C  Program Files MikTex 2  C  Program Files MiKTeX 2 7 fonts typei b   MAKTeX 2 7 fonts typel bluesky cm cmsy  1   typet bluesky cm cutii0 pfo    C  Progrem 1  m cmtti0 pfb    Output written on memoria pdf  83 pages               Hera  IL        Javadoc   47 Search       Progress   Ed Console 13  Texipse       Error Log             pdflatex   p  flatex   pd  latex   p  flatex   pdflatex   pdflatex   patlarex   pdflatex   p  flatex   pdflatex   p  flatex   pdflatex   p  dflatex     exe    exe    exe    exe    exe    exe    exe    exe    exe    exe    exe    exe    exe            No changes in sun   Jorg gcn plinguaplugin      y   gt        Wrtabie Insert   27  1       Once the steps listed above have been taken  the P system simulation console    will be displayed     61    62 CHAPTER 7  P SYSTEM SIMULATION    Wi Simulator console  File    Simulator info Fa  Current configuration   000           Simulator parameters  Steps limit    Time out limit  in milliseconds         Basic simulator actions          Advanced simulator actions             Alternative steps simulator actions             Set output trace file    
39. ado  textit Projec  campo hemos de introducir el nombre del nuevo proyecto  por  Una vez introducido este nombre  pr  1 boti  o n  textit Finish   en la parte inferior de la ventar         a     textit pSystemProject       la barra inferior de la ventana             OE da e E e    mo                Ie Hierarchy 23       sn a A     lt   gt                Texipse    En    exe gt     pd  latex exe        pazlatex exe      paflatex exe gt     pdflatex exe     pdflatex exe    pdf latex exe gt   pdf latex exe gt              2evodoe  7 seach    Progress    El console  3        Error Log    o        5611 B ri   am Files MiKTeX 2 7 fonts type1l bluesky cr   2 7  fonts cypel bluesky cm cmittiD pfb  C   bluesky cm cmmil0 pfb    C  Progrem Files l  5 pfb gt  lt C  Program Files MiKTeX 2 7 fonts t   Files MiKTeX 2 7 fonts typel bluesky cm c      onts typei bluesky cm cmr5 pfb    C  Progr  ky cm  cmt    p  b    C  Program Files MiKTeX 2  C  Program Files MiKTeX 2 7 fonts typel b    MiKTeX 2 7 fonts typel bluesky cm cmsy      type1 bluesky cm cmtil0 pfb    C  Program I  m cmtti0 pfb     Output written on memoria pdf  66 pages     Transcript written on memoria  log        gt           wps sN  o  SYN  Joragen pinquaphogn     ETET   Ea  5    No changes in    SVN   Jorg gcn plinguaplugin          sie          ACEN          Preamble  Ellenguaje UML  O Edpse   O Pangua   O plinguacore   9 puingusPlugin          Then  a menu with several options appears     29    30 CHAPTER 1  PROJECT CREATION   
40. angedPuginSafetyCopy  EU Primero pl   amp  i prueba  EI PruebanbstractFactery  EI PruebaEnlaces  de 32 PruebaSingleton   GERE    E S Trabajo sta    No changes in sun   jorg gcn plingusplugin                                                              Fie Edt Source Refacter Navigate Search Projet Run Latex Latex Symbols Window Heb  DiS deis B Beinen inne project naire  i  4 BPPREB A  Te orc  Ba te a Bors   ES Package Explorer 53     UO D new misi    D smustorrestureswie    por Bersm  0          ES i com gen plinguaplugin test  Software Projecis Sof A  J New p System na vez hemos escogido la opci    P    76 988                                                             EI com pinguaplugn auxiery  siguiente imagen como icono de  ES Fi  com qualityeclpse favorites  Software Projects So Mos mirena Bl es e  EI com quaityecipse favorites test  includegraphios  imagenes plingua  jpg   axsa panai  BI Compatib  ty  end center  EAE  BE copia  item Seleccionamos el proyecto al que queremos asignar ls  EI Copy of com gen pinguaplugin  textit P Lingua   adecuada para trabajar con P sistemas  Preambk Al  Ed Copy of org gen pinguaplugin copy3 e    begin center     9G genos     jg currentGUID6 10 08  Software Projects Software T Vincludegraphics s idth 100w  imagenes proyecto seleccior B Eclipse   5 ill org  gen plinguaplugin  Software Projects Software  end center    item    8 G Fungus  E m   Referenced Libraries Posteriormente  accedemos a la pesta  na llamada  textitir       O pungua  E
41. angesin Su i    T org gen pi Toggle ANTLR project nature  S org gcn p Run As  jf plinguacor Debug As      plinguecal Team  EE JE plinguaco       Compare With       xe     use imagenes menu j             xe   es project jpg    lt imagenes menu_project jpc     Jorg gen plinguaplugin          amp  12   plnguscot Restore from Local History    xe     imagenes psystemproject creado jpg  ides    EI Primero pl      Database  gt  fxe gt    use imagenes psystemproject_creado jpg gt          B  prueba PAingua   gt  bxe gt  genes psystemproject creado jpg     I Prucbaabs     poe Tools  gt  bxe gt   lt amagenes menu_plingua_contextual jpg  ide    xe     use imagenes menu plingua contextual jpg   xe    pdfTeX error  pdflatex  file imagenes mer  pdflatex exe   ding JPEG image failed  no JPEG header foi  pdflatex exe gt     gt  Fatal error occurred  no output PDF i           Properties Al Enter    s  is E              le    gt        pe pSystemProject       36 CHAPTER 1  PROJECT CREATION    Inside this menu  left click on the option Folder  Then     menu appears  which  is similar to that which is displayed next     Folder    Create a new folder resource  ay    Enter or select the parent folder   pSystemProject   pa  gt   2 3  com  gen  plinquaplugin  test  Software Projects Software Projects PlinguaPluginTests   59 gi com qualtyeclpse favorites  Software Projects Software Projects plinguaQuality sre plingusQuality   E E copia  sf currentGUID6 10 08  Software Projects Software Projects Pling
42. ava      amp  Java Emitter Templates  E  E JET Transformations  a   gt  usp     Model to Model Transformation       gt  pingue  PEM  E  Perl     ES Plugin Development  ES Sw  S  Tasks        Texipse   amp   E UML 2 1 Diagrams      amp  UML Diagrams  E  amp  User Assistance    C   Other  E Examples          Next  gt        Cancel       In order to end  left click on the button Nezt  gt      Once the steps of any of the options above have been followed  the P Lingua    files creation window appears     44    CHAPTER 2  P LINGUA FILE CREATION    Select P System features       Select the P System model  the P System file name and package  and f t will contain a main method  Project    E   Q  Jorg gcn plinguaplugin memo  Package  ES                Cancel    Inside this window there are several fields   Project  This field indicates the project where the new P Lingua file will be  created     Package  This field indicates the package or directory where the new file will  be created  inside the project mentioned above     Name  This field indicates the name of the P Lingua file which will be created     Available Models  This field indicates the models recognized by pLinguaCore      so that the user can select  from them  the model of the P system specified  by the file which will be created     Create main method  This option is not available yet  since it would only be  useful in the case that P Lingua admits the inclusion of modules defined    on other files  Nevertheless  it is 
43. ciations     Text Editors    Editor Selection  Keys      Network Connections   Choose the editor for files of type    pli     Perspectives   Internal editors    External programs          See  Content Types  for content type based File associations   File types        Search     Security    Startup and Shutdown    Web Browser      Workspace   amp  Ant  ANTLR Editor  E ATL  Buddies  i   CDO  E  Coloring Editor     Ecore Diagram   amp  Ecore Tools Diagram  EMF Compare  Help  E Install Update     Java     JET Transformations  Lisp     Metrics Preferences   amp  Model Validation      ORB Studio     Perl EPIC   amp  Plug in Development  E Run Debug      Soyatec     Tasks     Team   amp  Texlipse  e UML  E  UML2 Diagrams     Usage Data Collector       Activity Diagram Editing  Activity Diagram Editing  Ant Editor     amp  ANTLR Editor   Oar Editor    B  BibTex Editor   m Build Properties Editor     Category Editor      coo Editor   Class Diagram Editor  Class Diagram Editor                Bro                 Default                11  Left click on the option Syntax Coloring Editor on the menu on the bottom  of the window     22    Preferences                      type filter text File Associations   amp  General See    Content Types  For content type based file associations     Appearance File types   Capabilities  Compare Patch  Content Types     Editors    File Associations AAA  E  Text Editors                               Keys Choose the editor For files of type    pli     Net
44. cognized by pLinguaCore                 Jaya   org gcn  plinguaplugin memo memoria tex  File Edt Source Refactor Navigate Search Project Run P Lingua Latex Latex Symbols Window Help  0 8 Bo Bei Ci sk Bi 60 SEE imo 9   a  i  PLEREEE Hlawa     vor m e Badge Bo Modeling                                      S Package Explorer 23 EIE E     P  memoria tex 23  gt   3  ActionSupporter java    1  PsystemiWzardParamet      SO  Rom x  BE  mis SO      d com gen pinguaplugn test  Software Projects Softwa     de un proyecto con naturaleza  textit P Lingua   aunque no e   sau WX  I com pinguaplugin auxiary  encuentre en formato P Lingus  basta con que est   e  codifi  a a mb A  6  fi  com qualityeclipse  favorites  Software Projects Softw  formato de entrada reconocido por  textit pLinguacore  copyr  gt   EI com qualtyeclpse favores test Entonces  observamos que aparece un nuevo men    m   Dentro c   BWA Se  gt  Preamble  E  Compakib  ty men   u   situamos el rat   o n sobre la opci   o n Vtextit   amp  O Ellengusje um   218 copia este men   u   seleccionamos la opci   o m  temtiti  xpore P   S        Exipse  EI Copy of con  gen pinguaplugn Mtem Seleccionamos con el bot   o n izquierdo del rati  c r       PrembkA       Ping  I Copy of org  gen eingusplugn copy queremos exportar  Este fichero debe encontrarse dentro         ellengue     amp  O plinguacore      Bf curentGUI06 10 08  Software Projects Software Proj  de un proyecto con naturaleza  textit P Lingua   aunque no e  amp  G punguerti
45. copy  68 JE  plinguacoreTests  Software Projects Software Projec   58 G plinguaCoreUnchangedPlughsaFetyCopy    S Prinero pl     E prueba  EJ PruebadbstractFactory  El PruebaEnlaces  PruebaSingleton  P psystemProject  as  O Fichero  J5 Trabajo SIA    79H    jects Softwa    E          yectsiScftw     20 42 manu                   ware Proje          s  s    re       click on the option called Open Simulation Con                             Una vez efectuados los pasos anteriores   accederemos a la consola de simulaci   o n de P sistemas   En esta ventana podemos observar varios campos     Paris  PPPPPP ES  B  seve   E  P ip Modeling  I  P new simulation   PsystemWierdParamet      Falle  Zeh  Pie P sistemas  FT o  Bard    E Sn    de  simiar el P sistema codi  MI    debemos acceder   la consola de simulaci   o n  Para acceder   MW S de Preamble  esta ventana es necesario seguir los siguientes pasos  Ellenguaje UML  SYbegin enumerate      O edpse  Vitem Accedemos a la pesta  na llamada  textit P Lingua  en     Presmbl      P Lingua  e    9 punguac  men   u  principal de Eclipse  E    O secs  amp  O nme   item Dentro de este meni  u  seleccionamos la opei   oyn Y   9   Edpse     9 plinguaPlugin  Simulation Console   ol Paingua   end enwmerate  E lingua  plinguaf  E    mc  B       begin description   Nitem Hen   u   textic  File  ficheros     a    i  Muestra las opciones tV  i pi  Dentro de este men   u  encontramos las acciones   Wegin description          Y  d    ssp    Dolls     d
46. d  itemize   5 i oro ocn plingueplugin memo  Software Projects Softw   ba Eg imagenes Una vez efectuados los pasos de cualquiera de las opciones       Em accederemos a la ventana de exportaci   o n de P sistemas     9  arbokmembranas eps 196 26 04 09 20 42 manu    En esta ventana podemos observar varios campos                 200 00 MEAR Dwr D DU     celula eps 196 26 04 09 20 42 manu                                         B estructura entorno externo eps 196 26 04 0920    begin description  Y x   5 imagenes rar 198 26 04 09 21 05 manu a   a  memoria pdf E Sep  I      Fis memoria tex 213 2 05 09 16121 manu Jp Hierarchy EN le  gt    perfiltex 196 26 04 09 20 42 manu e      B plngua_2_0 tex 196 26 04 09 20 42 manu  G 3evadoc   97 Soarch C Progress   E  Console 13   O Emoog       3v   g s Dacos m    sistema p eps 196 26 04 03 20 42 manu Texipse  P  Jorg gen plinguaplugin            N tesstex 196 26 04 09 20 42 manu pdflatex exe   am Files MikTeX 2 7 fonts typel bluesky cr  gl   as        ll plinguaCorePlugin  Software Projects Software Projed   paf latex exe   2 7 fonts typel bluesky cm cmitti0 pfb    C         EI punguaCorePlugn copy  pdflatex exe    bluesky cm crmi10 pfb gt  lt C  Program Files 1 Be ih  amp        il plinguaCoreTests  Software Projects Software Projec  56 32 plinguaCoreLnchangedPluginsafetyCopy  U Primero pl       E prueba  TI PruebaAbetractFactory  TE PruebaEnlaces  E 12  Pruebasingleton  P psystemproject    S pfb    Ci Program Files MiKTeX 2 7 fonts t   Fil
47. directorio creacion jpg        ssta  na llamada  textit P Lingua  en el  Dentro de este men   u   seleccionamos la opcil  o n  textit     o n anterior  aparecer   a  la ventana de creaci   o n de f    o n izquierdo del rat   c n el directorio    Lingua  Este directorio debe    gt  con naturaleza  textit P Lingua     ssta  na llamada  textit File  en el men   u    accedemos al men   u  Vtextit Nev  dentro del men   u  anter  opcil  o n  textit Other   Tras esto    ventana  Dentro de la nueva ventana    L P Lingua   y dentro de este men   u     Amm un mre CU n0       E O  Ellengue   O Edpse   PAingua   Plinguac  5 0 plingusf        inr   BO nt                                                                                 O plinguaPlugn               celula eps 196 26 04 09 20 42 manu tit P System   a  fy estructura entormo extermo eps 195 cene         m    gt   v rar 198 26 04 09 21 05 ma                  Mr i n A zen  tex 212 2149       E  gt   met spem amr    imac  9  such  E progress coma 2 mim  CAER  BB plingua_2_0 tex 196 26 04 09 20 42 manu  Testis Cw BB r  Er Di  WN  org gen pinguaplugin      sistema p eps 196 26 04 09 20 42 manu   ail 2 n  IR tesis tex 196 26 04 09 20142 manu   28 zi age     amp  Y pngusCorePlugn  Software Projects Software Pr  EI plinguaCorePlugin copy       SB  38 plinguacoreTests  Software Projects Software Pre EN Wm  Es 12   plinguaCoreUnchangedPluginSafetyCopy a a 4  DJ Primero pl      ig  prueba  TE Prueba  bstractFactory  11 PruebaEnlaces  E 12 
48. e  EI Copy of com gen plinguaplugin Situamos el rat   o n sobre le opci   o n Mextit P Lingt       G Ellenguaje UML  I Copy of org gen pinguaplugin copy3 que aparece otro nuevo men   u     i    08 O Edpse  i amp  d currentGUID   10 08  5 Projet Wegin center    Preanbh A      Pingua  68 i org gen pinguaphign Vincludegraphics sid h i0cw  imagenes menu plingua creac    amp    plinguacore  EI org gcn pinguaplugin copy2  ena center  B 2 0 punguePluin    l org ocn plnguaplugin copy Dentro de este men   u   seleccionamos la opcil  o n Mex    EI org gcn plinguaplugin copyS P System   Una vez hemos escogido la opcil  o n anterior    O plinguac  I org ocn pingusplugi copy    ventana de creacil  o n de ficheros P Lingua  20 plinguer  3 org gcn pinguaplugin  memo  Software Projects      inre  E Cg imagenes Vitem Seleccionamos con el bot   o n izquierdo del rat   c d    O ns  E E tmp donde vamos a crear el fichero P Lingua  Este directorio c      memoria aux encontrarse dentro de un proyecto con naturaleza  textit F      E  memoria tog    memoria out  Posteriormente  accedemos a la pesta  na llamada  textitiF      arbolmembranas eps 1          O celula eps 196 26 04   estructura entor  8 imagenes rar   memoria  pdf  i memoria tex 212    BR tesis tex 196 26   8 58 plinguaCorePlugin    T    pUnguacorePlugn   BG p  nguacoreTests     122 pLinguaCoreUnchangedPluginSafetyCopy  I Primero pl  B F prueba  I PruebanbstractFactery  EI Pruebafnlaces  e 122 Pruebasingleton    P psystemroject  em  E 99
49. e favorkes  Software Projects Softw  que deber   i a aparecer la siguiente imagen como icono de  gt                    EI com qualtyecipse Favorites test    begin center  preside   18  Conpatbity  inoludegraphios  imagenes plingua  jpg   amp  O Ellenguaje um   8 copia  end center        Edpse       L Copy of com gen pinguaplugin  item Seleccionamos el proyecto al que queremos asignar la      Ping   EI Copy of org gen pinguaphign copy3  textit P Lingua   adecuada para trabajar con P sistemas  E  pungusCore     gl currentGUIO6 10 08  Software Projects Software Pro  Posteriormente  accedemos a la pesta  na llamada  textit P       pungusPiugn    S 159 org gen p  nguaplugin  Software Projects Software Pr   B   Referenced Libraries  BBA JRE System Library  Java5E 1 6    B Plugin Dependencies  i  iSc  E Cs icons  if  pingua gF 210 2 05 09 13 09 manu   Fj Psystem JPG 153 31 03 09 13 53 manu  sample  gf 153 31 03 09 13 53 manu  A Simulator JPG 153 31 03 09 13 53 manu     men   u  principal de Eclipse  Por    u ltimo  selecciona  Vendtitemize        Una vez realizadas las operaciones anteriores  ya disponemos  adecuado para trabajar con P sistemas  cuyo icono es el most  anteriormente  quedando un proyecto similar a V  e ste                                E Ey META INF  Asubsection Creac  l  0 n de ficheros P Lingua        i  MANIFEST  MF 153 31 03 09 13 53 manu  lt  en  gt     E  buid properties 153 31 03 09 13 53 manu pa         B plugin xml 209 2 05 09 13 00 manu Te Herarehy   2 Bla
50. e website  http    www gstaff org colorEditor and follow the following steps     i  Move the downloaded version of ColorEditor into the directory  plugins  which is inside the directory where the installation of  Eclipse is located      amp  plugins  File Edit View Favorites Tools Help    Q  O B seh Bo Folders ir     Address     plugins             File and Folder Tasks             wi  Rename this file i clipse     org ecli clipse       gy Move this file     D  Copy this file       Publish this file to the  Web                7 org edipse         Emai this fie    XK Delete this file          y  ES           Other Places Bees ie    org eclipse     org ecli       ecipse E           E  My Documents E E    Cy Shared Documents i   Org edipse     org  org edipse     org ecipse     org epic de     9 My Computer   SQ My Network Places                                                                                                    org epic pe          ii  Open the file catalog  inside the directory modes  which is con   tained in the file ColorEditor    cbg editor_1 2 6 jar   WinRAR  copia de evaluaci  n   Archivo   rdenes Herramientas Favoritos Opciones Ayuda    IDEADO AS    A  adr Extraeren Comprobar Ver Elminar Buscar Asistente Informaci  n Buscar virus Comentario auto extra  ble          El     cbo edtor_1 2 6 jarimodes   archivo ZIP  tama  o descomprimido 1 094 521 octetos       Nombre 4 Tama  o Comprimido   Modificado CRCS2          gl 22 11 2006 14 08     954088F8  actionscri
51. eShfeee   E Qn  Dentro de este men   u   seleccionamos la opcil  o n EO insti     E copy Quac textit New P System   Una vez hemos escogido la opci  o  B  ES Copy Quelfied Name parecer   a  la ventana de creacil  c n de ficheros P Lir   E  7  t Paste  Cul a e  BE tt 3E Delete Delete item Seleccionamos con el bot   o n izquierdo del rat   c        ed  Sa onde vamos a crear el fichero P Lingua  Este directorio c   El   amp  of 2 Remove from Conte salosshitvoown  nsontrarse dentro de un proyecto con naturaleza Mextit FW a  Se Build Path id j  gt      Sm efector aes E A se  B SS   ER      Pe  8 search E Progress   ES Console 9  error Log     B 3es g8s 2 5  a Ge hE pt Ele p  SYN Goravoenpingueptign     Q s     Refresh 5 a exe   am Files HiKTeX 2 7 fonts typei bluesky ct   Ei   r4       TIS WORMS   exe   am Files MiKTeX 2 7 fonts typel bluesky cr     0  m  um 4b 4j  VL x exe   2 7 fonts typei bluesky cm cmitti0 pfb    C     gt  ma       P E plno   adajremove Lisp Nature x exe    bluesky cm cnmi10 pfb gt  lt C  Program Files t   sf e    amp   Epio puns    peexe   S pfo    Ci Program Files MiKTeX 2 7 fonts t    Mo charges swn    BE Debug As    Bx exe   Files MiKTeX 2 7 fonts typel bluesky cm c     Jorg gen plinguaplugin       alt S p Ex exe gt   fonts typel bluesky cm cmr5 pfb    C  Progr  Lis impare Wih    Ex exe gt  ky em cmr7 pfb gt  lt C  Program Files MiKTeX 2      i pruet pra   N en al Program Files MiETeX 2 7 fonts typel b   Ne rs y Ex exe gt   MiKTeX 2 7 fonts typet bluesky cm
52. emroject      em      X Trabajo  SIA a                   EI cxg gen pinguaphagin copyt Dentro de este men   u   seleccionamos la opci   o n  tex  EI org gcn pingusplugin copyS P System   Una vez hemos escogido la opcil  o n anterior   EI org gcn pinguaplugn copy ventana de creacil  0 n de ficheros P Lingua       38 org cn  plinguaplugin memo  Software Projects So  a C imagenes  item Seleccionamos con el bot   o n izquierdo del rat  c  E Ey tmp donde vamos a crear el fichero P Lingua  Este directorio c   E memoria  sux   encontrarse dentro de un proyecto con naturaleza  textit F  E  memcrisog     2 memoria out    Posteriormente  accedemos a la pesta  na llamada  textit F    ER  memoria tex 3   Ghora gen pingueplugi   L  Simustorrestureswe            nx  B       observamos que aparece un nuevo men   u    e Wegin center        I Conpatibity    includegraphios width  10cm   imagenes proyecto_creacion_  SE cone   Aendteetiveeh Preamble  T    Copy of com gcn plinguaplugin    Situamos el rat   o n sobre la opcil  0 n  textit P Linge Jeriguaj   LM     E copy of org gen pinguaplugin copy3   que aparece otro nuevo men  u        Edpse  68 d  currentGUIO6 10 98  Software Projects Software    begin center  ci ein      ineludegraphics vidth 10cm   imagenes ment_plingua_creac   end center        men   u  principal de Eclipse  Dentro de este men   u      aparecer   a  la ventana de creaci  o n de ficheros P Lirw  E j  gt                               E  le    gt           Texipse        E me
53. er  Este fichero debe encontrarse dentro 20  E G imager ES  Copy Qualified Name proyecto con naturaleza  textit P Lingua   aunque noe       a  E Gy tmp   Paste Che ntre en formato P Lingua  basta con que est   e  codifi   a    arbol yg Delete Da  to de entrada reconocido por Vtextit pLinguaCore  copyr    a    0 celula  na llamada  textit P Lingua  en el men   u  principal     a  0 estu 5 t  ca wn time  seleccionamos la opei   o n Mtextit Export P SysWl a    mager quss take Site    gt  a  memor Build Path  gt  sen se    Ss Refactor bisher g  le x   B pinous tas Import     search    Progress   E console 53      Error Log  Offers s  v 5  98 sistemi LA Expert  Ge BE A Br 17 SWN Gora oen pinguepiocn     B tessei ie    punquacal e Refresh 5  amstel  Ir M act Assign Working Sets  Fuse   ae  8 d pungus  l   a pungco   RunAs    en  org ocn plinguaplugin      I Primero  Debug As       8 E prueba Team      I Pruebaabs Compare With  gt     Ex PruebaEnie Replace with  gt   Errem  o  SC    SB psystempr JB new simulation   BG se Properties  Alt  Enter    a  68 13 Trabajo_SIA  la   Y  pe Fichero pli  pSystemProject stc       Inside this menu  left click on the option Export P System     Left click on the file that you want to export  This file should be lo   cated inside a project with a P Lingua nature assigned  though it does  not have to be necessarily encoded on P Lingua format  Instead  it is  enough for it to be encoded on any input or output format recognized by  pLinguaCore o     se 
54. es MiKTeX 2 7 fonts typel bluesky cm c   fonts typei bluesky cm cmr5 pfb    C  Progi  ky cm cmr   pth gt  lt C  Program Files MiKTeX 2   Program Files MiKTeX 2 7 fonts typel b    MAKTeX 2 7 fonts typei bluesky cm cmsy7     typei bluesky cm cmtii0 pfb    C  Program 1  m cmtti0 pfb      p  flatex exe    p  flatex exe    pdf latex exe gt   p  flatex exe    pdflatex exe    p  flatex exe    pdflatex exe    pdf latex exe gt     No changes in sun   Jorg gcn plinguaplugin                                           Bsc pdflatex exe gt  Output written on memoria pdf  80 pages      Se  pdflatex exe gt  Transcript written on memoria  log  E      39 Trabajo SIA v  la l 2  hd Fichero pli  pSystemProject src       Then  left click on the tab called P Lingua  inside the main menu of    Eclipse   menu                irit  amp  oa  Pero i   iE Package ne ii h      68 8 com gcn plinguaphugn  test  Software Projects Softwa  EI com plinguaplugin auxitary  68 fa com qualtyecipse favorkes  Software Projects Softw   EI com quaityecipse favorites test  EI Conpatb  ty  EE copia  EJ Copy of com gcn plinguaplugin  EI Copy of oro gcn pinguaplugin copy  68 Ja currentGUIDS 10 06  Software Projects Software Pro   8 158 org gcn plinguaplugin  Software Pro     Ez org gen pinguaplugin copy2  I org gcn pinguaplugn copy  EI org gcn pingueplugin copy     El orocrmoinguaplogn copy  S gl ora gan  plinguaplugin memo  Software Projects Softw       Gy imagenes  Cs tmp     arbotmembranas eps 15    celda eps 196 26 04 09
55. exe    exe    exe    exe    exe    exe    exe    exe    exe    exe    exe      No changes in Sun    org gcn plngusplugin            4 P Add Remove P Ungua project nature Pia P PPPPPP    T a Best estem RIDET  EP new Simulation Di PsystemwizardParamet   T  new p system cn    imagenes selecoion director All HEEEL LETI  Open simulation Conable ces  observamos que aparece un T    e men   u   situamos el rati tc   B   ORE EE z  opeiV  o n Mtextit P Lingua   Observamos que aparece otro nv    amp  WS de Preamble  a  9 Ellenguaje UML       Eclipse  PAingua  plinguaCore  PlingusPlugin                Once the steps of any of the options listed above have been taken  the import    P system window appears     E Import P syst    Select destination file features    Select the destination file format and the P system file route  as well asthe file route where the destination file willbe created in          Project JosystenProject           Package  em       Name              Available Output Formats       bin                  Preserve format       Select source fe       Browse                   Finish       Inside this window there are several fields and options  whose purpose is de     scribed below     Project  This field indicates the project where the file resulting from the im   port of the original one will be created     Package  This field indicates the package or directory in which the file resulting  from the import will be created  inside the project above     52 CHAPTER 4  FILE I
56. fb gt  lt C  Program I  pdflatex exe   m cmtti0 pfn        pingue 2  0x 196 26 04 09 20 42 manu pdflatex exe   Output written on memoria pdf  69 pages      hy sistemo p 0ps 196 26 04 09 20 42 manu pdflatex exe   Transcript written on memoria  log    i tesi tex 196 26 04 09 20 42 manu al E  PN ik RU Ae e e MANET CR         Ja    gt     O cebdaceps 196 26 04 09 20 42 manu    estructura entorno externo eps 196 25 04 05  Imagenes rar 195 26 04 09 21 05 manu   memori pdf   i memoria tex 208 2 05 09 13 00 manu       perfiltex 195 26 04 09 20 42 manu                                                       nt  Wie Insert E       Finally  left click on the option Add Remove P Lingua project na   ture on the menu above and press F5  just like the option described  before     35    Once the actions mentioned above have been performed  there is a suitable  environment to work with P systems  whose icon is the one displayed before   and whose outlook is the following        File Edit Source Refactor Navigate Search Project Run P Lingua Latex Latex Symbols Window Help  SOS DiS A DONA BIO eo7  a if 4  PPPPPP S  oo   i  Psoe er icm a 6 as E A e  Modeling    E Package Explorer 22 ERS  Gora cen pinquepiogi   D  Smustorresturesmz      Safe os   xg cB     Je  com gcn plinguaplugin test  Software Projects Softwa Dentro de este men   u   seleccionamos la opcil  o n  text  6   98  8 89 X    EI con pinguaplugin  unary P Lingua project nature   Una vez hemos escogido la opci       E  F  com qualtyeclps
57. g in Development  Run Debug  Soyatec  Tasks  Team  Texlipse  UML  UML2 Diagrams  Usage Data Collector    File Associations          See    Content Types  for content type based file associations   File types        9   php    C   phtml    ol   C   pli        pls       pm        pov       povray  Sa   prd   A  prg       pro       project    Pak mennnrkine       Associated editors        Prsystems Editor  default     ring                e       14  Left click on the button Default on the right part of the window     23    24    E Preferences    type filter text    File Associations      General   I  Appearance  Capabilities  Compare Patch  Content Types  Editors   File Associations       Text Editors  Keys  Network Connections  Perspectives  Search  Security  Startup and Shutdown  Web Browser      Workspace    ANTLR Editor   ATL   Buddies   CDO   Coloring Editor  Ecore Diagram  Ecore Tools Diagram  EMF Compare   Help   Install Update   Java   JET Transformations  Lisp   Metrics Preferences  Model Validation  ORB Studio   Perl EPIC   Plug in Development  Run Debug   Soyatec   Tasks   Team   Texlipse   UML   UML2 Diagrams    E  El  E  8      EE EE EE EE FE FE FE EE   E  EE REI RE  RE  RE  RE  AA    9          See  Content Types  for content type based file associations   File types            pas      patch  A    pdd  O   php  A   php3  A   php        phtml    pl        pli      pls      pm      pov    hok nsw       Associated editors        P Psystems Editor             Remove  
58. ge tiar 22 rec     i rngunwaneperemunten ava  DD ringuszssarenmerna  T Prerna rer      een Eres  BS e  a di  se pe A  3h etrercsc Leres Al Hne Pingu grogan deines any ot recogniser Pons res   3 BA IRE Sat Lay Ds 1 5  Josie SAT robe P    B ignorano    er ro hremater abo P gua sss piensen  3 D kons ieri  E  2008 tana Peta nenne   um   ee On hatl cones  hid srapetin         FEM T Mhie proa tes cleats  you can deta naar nod p E  Baird Fito tms he CMU eneral Patle cenae ard    nsus not orate   Lm i dis    the Free salvere Fuer  ehe vers Sl he Leese  or  E 53 cra oen lravelusn nemo  tse Bade pnus  30 Ey irevenes    RT ET rss xu e hops that ile sei  EAGLE RO ABRA ue vs even en rise Waranty ct  sd    MERCHANTABILITY or FINES FOR A PARTICULAR PURPOSE  Soothe  2 artalnenbrerasisps Ion 2804 S GMU Serera Pubie Lense for more dl    ee Teu shold have received a copy ofthe GNU General Publi License    acu PB  Ht ee bm rene EES  e  fi meneria ter 260 255 09 27 35 la   E perti tec 138 aspas zoaz mal     Mode etie afan of scans P systems oe  T pirana   8 Goran snor menhrae Pies nada he 2075 70 vll z  D given ee   T plinguaICCC tes  ma usse  alc lbokt  E sitemap ape 15 2104 09 20 4  Simp antiport   S emiten 225 aus 85 r lS ano  FF teasitox 196 2 040 20 E   Id rentre dion  da alrquaCeed   o reus TE  E 12 einquocereciun fares HIHUN  seen ae  le LS aarqueCareTest cose ees Mss ns  Pattee fn ipt orta  TE Practica POD Sabio bti AS a  Warme  ee  sou  E E  Pratt  El rabia 6 3nd  S podran S Console 9  v
59. ges      pdflatex exe gt  Transcript written on memoria  log      Y     gt        memoria pdf   org gcn plinguaplugin memo    si                                        Left click on it  Then  a new window appears     31    I New Project ER   Select a wizard Em  Create a new project resource                S Java Project   aE Java Project from Existing Ant Buildfile  SE Plugin Project        General         Eclipse Modeling Framework   amp   amp  Ecore Tools    E Graphical Modeling Framework        E JET Transformations   a   lisp    amp     Model to Model Transformation  E  amp  Perl   E  amp  Plugin Development  TEEN       amp  Texipse   8  amp  Examples     Cmn  c Cm        Inside this new window  roll over the menu General  Inside this menu  there is  an option called Project  Left click on this option and  then  left click on the  button Next  which is on the bottom bar of the window           Project nae           Use defaut location  rs  Enen sete ENTRIES    Working sets          lad project to working sets          Then  a new window appears  Inside this window  there is a field called Project    name  On this text field  introduce the name of the new project  for instance   pSystemProject     32 CHAPTER 1  PROJECT CREATION          Project name    p5ystenProject         S  use defaut location          WESS Stings Eons AE          Working sets    lad project to working sels       o Ce Jos            Once this name has been introduced  left click on the button Finish  w
60. gn     Y oroa new    entre en formato P Lingua  basta con que est   e  codifi    Giessen ato de entrada reconocido por  textitipLinguacore copyr    E O pirat    lorggeng Open F3 ka  na llamada  textit P Lingua  en el men   u  principal     pungusr  Worggng Open with    hoieime  seleccionamos la opci   o n  textit Export P Sys    nc  WW org gen  Show In AlsShftew  rh men   w    0 inst   S B   og aen   itemize  El geuw  Gy imag is   a0  Et vez efectuados los pasos de cualquiera de las opciones       e   0 arbol  75 Paste Cole deremos a la ventana de exportaci   o n de P sistemas  Ww  Q celle 9 Delete Delete  E on ventana podemos observar varios campos  B ate      estru    mag     meme      Bem para ps   a  dad der basil    seen    Progress El console 12    eivorteg  ESSEN  o  sister Be Import  Se BE rt EI   Di  SMdorg oenpinguophan        Bi tesis LA Export    g Mimoss  E p nguc atmen     pungua d Refresh 5 PES al   rfr ei Modan  E Run As  org  en lingaaplugin     S Primeros   e prueba   Debus As  I Pruebant Team    lues  Compare With  pruebas  Replace With    Systeme P tngue   Ss  o    2 Trabajo  SIA            Properties  Alt Enter    E  si    o Fichero  pli   pSystemProject src       Then  a new menu appears  Inside this menu  roll over the option P   Lingua  Immediately  a new menu appears     53    54 CHAPTER 5  FILE EXPORT       File Edit Source Refactor Navigate Search Project Run P lingua Latex Latex Symbols Window Help                                                   
61. he export on XML format of the P system  to simulate  For the right performance of the simulation  it is necessary for both  files to be located on the same directory     Chapter 7    P system    simulation    For executing a simulation if a P system encoded on a file  the simulation console  should be accessed  For accessing this console  it is necessary to follow the    following steps     1  Left click on the tab called P Lingua on the main menu of Eclipse     2  Inside this menu  left     sole         ri   ri    es ba  Br Fle e  E Package Explorer ES  E x com gen pinguaphugin test  Software Pr  EI com plinguaplugin audlary   59 fi  com qualityeclipse  Favorites  Software Pros  LJ com qualityeclipse favorites test   EI Compatibty  1 copia  I Copy of com gen plinguaplugin  EI Copy of org gen plinguapkugin copy3  IN currentGUID6 10 08  Software Project   18 org gcn plinguaplugin  Software Project    l org gen  pinguaphosin copy2  I org gen plnguaplugin copy  I org gcn pinguaplugin copyS  EI org ocn plnguaplugin copy     Xl org  gen  plinguaplugin  memo  Software Pro   E Cg imagenes  B Cg tmp    arbokmembranas eps 196 26 04 09    celula eps 196 26 04 09 20 42 manu    estructura entorno externo eps 196 26 04 09 20  18 imagenes rar 198 26 04 09 21 05   gt   memoria pd  i memoria tex 214 2 05 09 18126 manu  fb perftex 19  f Plnqua_2_0 tex 196   amp  sistema p eps 196 26 04   Bi tesisitex 196 26 04 09 20142 manu  8  BY plinguaCorePlugin  Software Projects    EI plinguaCoreplugin 
62. he option Import P System  inside this menu         de     vor       sg        Slevro  Plnguaplugn test  Software Project  5oftwa   EI com pinguaplugin auxiiary     igi com qualtyeclipse  Favorites  Software Projects Softw  EI com qualtyecipse favortes test  EJ Compatib  ty  S E copia  EI Copy of com gen pinguaplugin    Bi Copy of org gen plnguaplugin copy3  E Ja  currentGUIO6 10 08  Software Projects Software Pro      4 org cn plnguaplugn  Software Projets softnare Prd  El org gen pinguaplugin copy2  EI org gcn pinguaplugin copy  EI org acr pinguaplugn copy  EI org gcn pinguepiugin copy    Kah org  gcn  plnguaplugin  memo  Software Projects Softw   Gy imagenes  i Cg tmp    arbobmembranas eps 196 2  Q celula eps 196 26 08 09 20   estructura entorno externo eps 196 26 04 09 20  5 inagenes rar 198 26 04 09 21 05 manu   gt  memoria pdf  ly memoria tex 213 2105 09 16 21 manu   T perfiltex 196 26 04 09 20 42 manu    ER pingua_2_0 tex 196 26 04 09   sistema p eps 195 26 04 09 2  B tesistex 196 26 04 09 20 42 manu    p  nguaCorePlugi  Software Projects Software Proje    Y puinguacorePlugin copy  de   punquacore Tests  Software Projects Software Projed  E 12  puinguaCoreUnchangedPluginsafetyCopy   TE Primero pl     fp prueba  I PruebaAbetractFactory  Y PruebaEnlaces  E 12  Pruebasingleton  P psystemProject  em  9 Fichero   6  9 Trabajo SIA             34 09 20 42 manu                 src   pSystemProject       File Edt Source Refactor Navigate Search Project Run   gt        51       
63. hich  is on the bottom part of the window  Once the steps listed above have been  followed  a new Eclipse project is created                                                             E Jaya   org  gc  plinguaplugin memo memoria tex   Eclipse Platform  Fie Edt Source Refactor Navigate Search Project Run Plngua Latex Latex Symbols Window Heb  ri  Bein  Bi60   EEE  Bin  BBBRBBB mla vo   7  iue mcm m dije Modeling     Package Explorer 15 BS    Y 7 ETE menoiatex E SEA Eras B  E Yf com gcn plnguaplugin test  Software Proj wal s que existe la opcil  o n  textit Project   E  loo 9 Bees  EI com pinguaplugin auxiiary opcil to n y pulsamos sobre el boti  o n Mtextit Next   one l    6  igi com qualtyecipse favortes  Software Pr inferior de la ventana  E le x Rx ET  EI com queityecipse favorites test     roa Neon   15  Conpotbity    aenei0en   imagenes menu project 3pg  IR ise teh d  GHEY copia i a S  9 Edpse  a E   PemikA       pungua  BI Copy of com gcn plingusplugin  ece una nueva ventana  Dentro de esta ventana  encontramos      ig  9 gengu  e is  EI Copy of org gen ping textit Project name   En este de introducir el la Ord   B rere    jaf currenteum6 10 08   oftware Proj    oyecto  por ejemplo   textit ff EEE   una vez AA    S  if org gen pinguaplugin ware Pn mbre  pulsamos sobre el bot   o n  textit Finish   en la      amp  G punga  EI erg gcn plinguaplugin copy2 a ventana  2    3   pungua  EI org gcn pinguaplugh copy os pasos anteriores habremos creado un nuevo proyecto de 0 ud  
64. ichero P Lingua  Este directorio d  y plinguacc pus path  p bntrarse dentro de un proyecto con naturaleza  textit F  RE Pme ee  Bien    beriormente  accedemos a la pesta  na llamada Vtextit rw   BE peba A O   z    T    Pruebaab  jy Import   gt  wem    9    Bi mobil a ton  E      gt     E oe   Tm s  E Fre   Search   Progress   EI Console 13  gt  9  Error Log   Of  6s 3  8  JS Trabajo S Open Project pa a eee ee By BE   ct EJ  137   deroan pinuan     Close Project initiated  1 2 eov  Close Unrelated Projets      Assign Working Sets   Add Remove Lisp Nature No changes in SN  rg  ocn plnguaplugi   YH Add Perl Nature nn  Toggle ANTLR project nature   Runas     Debug As     Team     Compare with  gt   Restore from Local History     Database     P ingua     POE Tools     Properties Alt Enter             Fie Edt Source Refactor Navigate Search Project Run Plingua Latex Latex Symbols Window Help                                                                                                      ies AR Bit 0 Q   8gG i9054  3     IPPPPPP F3    ova      i Bor  2g9BdBa  H Modeling   Besoin E 77 D memoriatex 22     org oon pinguaphgi       Ui SmmulatorFeatwreswie      Ton SS Bring  78     i com gcn plinguaplugin test  Software Projects Softwal     6     ANO  I com pinguaplugin auxiiary ibles problemas  se recomienda crear un directorio llamado p    8 ig com qualtyeclpse favorites  Software Projects softw  el proyecto creado  Este directorio deber   a  almacenar lc    EI com qualtyedipse fav
65. inish          Inside this window there are several fields and options     Available simulators  This field lists the different simulators recognized by  pLinguaCore   which are suitable for the model of the P system to sim   ulate so that the user selects  from them  the specific simulator for the    simulation to create     60 CHAPTER 6  SIMULATION CREATION    Allow steps back  This field indicates whether the simulation to create will  be able to execute steps back or not     Allow alternative steps  This field indicates whether the simulation to cre   ate will be able to execute alternative steps or not  This option is only  available on those simulators which allow to take alternative steps     Open simulation console  This option indicates whether the simulation con   sole will be displayed after creating the simulation  so as to execute the  simulation created     Select file  This field indicates the route of the file in which the simulation of  the P system will be created     Once the creation parameters for the simulation of the P system have been  selected  left click on the button Finish  Then  the simulation according to the  parameters previously set will be created on the specified route    In fact  two files are created  a file  whose extension is  sim  on which  the parameters of the simulation are encoded  for instance  whether steps back  and or alternative steps are allowed or not  and another one  whose extension  is XML  which is the file resulting of t
66. ipse  favorites  Softy formato de entrada reconocido por Vtextit pLinguaCore  copyr        7  EI com qualtyeclpse favortes test Entonces  observamos que aparece un nuevo men   u   Dentro c AWSR o FINIS  I Conpatib  ty men   u   situamos el rat   o n sobre la opcil  o n  textitt eo  EE copia este men  u   seleccionamos la opei   o n  textit Export P       obs  EI Copy of com gcn plinguaplugin  Mtem Seleccionamos con el boti  o n izquierdo del rat   o r          preambk  s      wie   B Copy of org gen pinguaplugn copy3 queremos exportar  Este fichero debe encontrarse dentro       9 G tenge        sores  E d currentGUID   10 08  Software Projects Software Pro  de un proyecto con naturaleza Vtextit P Lingua   aunque noe   9   Edese  amp  8 pLinguaPhugh  S losen nem p entre en formato P Lingua  basta con que est   e  coditi   9   Ping    l organa ato de entrada reconocido por VtextitipLinguaCore  copyr   9 O punga  dogm  Open FS a  na llamada  textit P Lingua  en el meni  u  principal 5 0 plinguar  T org gen g Open With   kuitimo  seleccionamos la opei   o n  textit Export P Sy   Doggi Showin Als shiftew    le xenon      iyd org cn   itemize   NIS B copy Arc m  8 Ey tmp   E Copy Qualified Name  vez efectuados los pasos de cualquiera de las opciones 6 g    arbol  3 Paste Crta deremos a la ventana de exportacil  c n de P sistemas   9 celule     Delete Delete sta ventana podemos observar varios campos  B   estru Y    mag     mem    D zen  mem Build Path  gt  uses  lt   gt    fj perfi
67. it is displayed its iden   tifier  its label  the objects of its associated multiset and its child membranes                                                                                      fiz Ca D lan To Ca Fs Ca D      Tan Oy      amp  fois  2 2 2  d 2  Tos Ca Go lan Toyo Ca A fj   Ca Pazo fio  5 e  a 2 i    2 2  f  C  hn O Fs Ca   fi   Cs        losa    amp  fs Cs      2  E h d  gt   Tio Cs Br     Ts Cs T2 Cs ls Ca T      D  2   E E  Tis Ip fap To To     bp fy     Tajo Cae     Tio  m ets  amp                       When a node on the left bar tree is selected  its corresponding membrane is  highlighted in blue on the right panel  This way  if a membrane is selected on  the right panel  its corresponding element will be selected on the left tree     7 1  CONFIGURATION DISPLAY 67           Configuration Al rere Di     Label 1  Charge t    ven   cra Terror  Rt    ret          Is Ca Paz fao Ho Ca To  Ca    Ci    Pasa C2    Fora    az Ca Paz fia   7  Ti Ca T2 Cs Tia Cs fi Ca Co fon  7 Tii Cs  LO d Li 2    3 2 5  Rn Ca E  Ci Tia Cs Ti Ca Ti Ca T  Cr  rm  O 4      eo ha an To To Ta tan Ta Too Tu    Mont    atl  Mant Y E Fasa Ci Co foi  C lv          BE       Mga Ca Baz Baz Toyz Ca  6     faz Ca    BIB   ele                B       Ment                                                         By double clicking on a membrane on the right panel a detached view of  such a membrane is obtained in a different window  This way  the user can  focus on a specific membrane in order to e
68. linguaplugin   ro A     i prueba Team       EI Prueba  bs Compare with D    Er prueban    Bac   Properties Alb Enter  a  68  3 Trabajo_SIA  S m  pe Fichero  pli   pSystemProject src       e Left click on the file whose P system you want to simulate  This file should  be inside a project with a P Lingua nature assigned  though it does not  have to be necessarily encoded on P Lingua format  Instead  it is enough  for it to be encoded on any input format recognized by pLinguaCore          File Edit Source Refactor Navigate Search Project Run P lingus Latex Latex Symbols Window Help                                                    ER Bai cis ER O ERE CEN E P BBBBBR EJES  7  Per  i gab dba   S Modeing   E Package Explorer 3 E15   7 TOM  memoristex 23  gt   T  actionSupporter java    T  PsystemwizardParamet    anoi rgng E    68 ia com gen pinguapiugin test  Software Projects Softwa Wegin center  Daun   I com pinguaplugin auxiary   inciudegraphios width 10cn   imagenes menu exportacion j        igi com qualtyeclpse favorites  Software Projects Softw   end center  item sl     EI com qualtyecipse Favorites test    Dentro de este men   u   seleccionamos la opcil  o n  textit     ES preme  E  Compatibity  item Seleccionamos con el bot   o n izquierdo del rat   o r   KG Heros Li  E E copa queremos exportar  Este fichero debe encontrarse dentro De        rane  T   Copy of com gen plinguaplugin de un proyecto con naturaleza  textit P Lingua   aunque no e        PreambliAl    i      P Ung
69. lting configuration     7 1  CONFIGURATION DISPLAY 63    Reset  This button resets the current simulation to the initial configuration of  the simulated P system     Step forward  This button causes the current simulation to take a step for   ward     Run  This button causes the current simulation to take steps forward until  reaching a halting configuration     Pause  This button causes the current simulation to stop  It only can be  executed in the case that the previously clicked button is run  not Step  forward  though future versions might not have this limitation     Set output trace file  This option indicates whether the computation of the  current simulation is being saved on a trace file or not     Select file  This button selects the trace file where the computation of the  current simulation is being saved  in the case that the option above is set     Commit trace  This button commits the save of the computation of the cur   rent simulation on the trace file  in the case that the option above is set   Note that  if this button is not left clicked after the last steps taken  the  trace file might contain part of  or all  the information of the last steps  taken  However  in the case that the button is left clicked  the trace file  will contain all the information of the last steps taken     In the case that the specific simulation can take steps back  the following  actions can be executed     Clear previous steps  This button erases the steps taken by the simulati
70. moria pdf    Ys Hierarchy 52 seul   fig memoria tex 212 2105109 13 49 maru        a   f perfi tex 196 26 04 09 20 42 manu   20vadoc  4 Search  C Progress  E consoie 23    erortog  O Jua  Bs s    Ga bE t hx ri SN Gora gen pinguaplugn             gr rt eos  EXE    No changes in    SVN   org ocn plngueplugin                      a  Se             inquaCore       punga          n src   pSystemProject       Then  left click on the tab called P Lingua on the main menu of Eclipse   Inside this menu  left click on the option New P System           File Edit Source Refactor Navigate Search Project Run Latex Latex Symbols Window Help  ithe iB Beicis BIB 4 ii iv  41PPPBPP  ir gle erui ma            18 Package Explorer   2    EI com aualtyecipse favortes test  EI Compatibiity  E    copia  T Copy of com gen plinguaplugin  1 Copy of org gen plinguapkugin copy3  EG curentGUIO6 10 08  Software ProjecsiSoftware F     lf org gcn plinguaplugin  Software Projects Software  EI org gcn pinguepiugn copy  EI org gen pinguapluan copyt  EI org gen pinguaplugin copyS  E org cr pingueplugin copy  5 i org cn plnguaplugin memo  Software Projects S0  Cg imagenes  E Ex tmp  memoria aux  E  memoria tog  memori out  9  arbokmembranas eps 196 26 04 09 20 42 me                   igi com qualityeclipse  favorites  Software Projects So A              Fad               IP new simulation    D Smustorfestureswe       IP open simulation Console 1 directorio    3 con naturaleza  textit P Lingua      yagenes seleccion 
71. n ingutelgn     men   u   observamos que existe la opcil  0 n Mtextit Projecw                                   2pingua_2_0 tex  org arn pinguepl    amm z  3 segunda dvi  Trabajo SIA  Te Hierarchy El SS  4 segunda tex  Trabajo SIA      Javadoc    j  Search      Progress   El Console 23      Error Log   Bav    89s  tt             BR ct Bri   9  eeenpgepug     pdflatex exe   am Files MiKTeX 2 7 fonts typel bluesky cr   Er   Ob Qj B   porsceeen 2 7 fonts typei bluesky cm cmittiO pfb    C   pdflatex exe    bluesky cm cmmiiD pfb    C  Program Files     pdflatex exe   5 pfb    C  Program Files MikTex 2 7 fonts t                    AR tesis tex 196 26 04 09 20 42 manu   E E plinguaCorePlugin  Software Projects Software Proje  EI plinguaCorePlugin copy      ji  plinguaCoreTests  Software Projects Software Projec   5    plinguaCorelinchangedPluginsafetyCopy     Primero pl   SHB Proyecto   E iP prueba          No changes in    SYN  pdflatex exe   Files MiKTeX 2 7 fonts typel bluesky cm c     Jorg gcn pinguaplugin      pdflatex exe    fonts typel bluesky cm cmrS pfb    C  Progr  pdflatex exe   ky cm cmr7 pfb    C  Progrem Files MiKTeX 2   pdflatex exe gt  C  Program Files MiKTeX 2 7 fonts type1 b         TBI PrueboAbstradodory  patiatescexes FI  KTeX 2 7 fonts type1 bluesky cm cmsy7 1  i   ie ip ood pdflatex exe    typel bluesky cm cmtiiO pfb    C  Program I      2 PruebaSingleton   patistox oxe gt  m cmtti0 pfb       43 Trabajo SIA    pdflatex exe   Output written on memoria pdf  65 pa
72. n of the P system will display the same color   Important  After installing ColorEditor  the cause of the errors  will not be able to be identified by rolling over them  unless the  default editor included in pLinguaPlugin is used  There are two  possible ways to install this product      a  Copy the file cbg editor_1 2 6 jar on the directory plugins  which is  inside the directory where the installation of Eclipse is located      amp  plugins    File Edit View Favorites Tools Help    Qw     B JO search   gt  Folders  EEE  I   Folder syne    Address  E plugins          File and Folder Tasks  A n    z  a E E             Rename this file    y Move this file   D  Copy this file     Publish this file to the  Web    u    orgueclipse     orgueclpse     org edipse           y  N A    j     E   El           ecipse     org edipse     org eclipse     org eclipse     org eclipse         E mail this file    XK Delete this file       y y X X X  4  ie  ESI  ESI lj             TCU  eclipse     org eclipse     org eciipse     org edipse     org ecipse     org eclipse     org eclipse                 D eclipse    5 y    y y   E  My Documents ES y   j ES  E  18 18                                       Shared Documents   eae y m Org edipse     org eclipse     org eclipse     org eclipse     org epic de     S  My Computer      My Network Places                          8     ves Ofg epic reg    AJorg gen plin             Details        b  Download a version of ColorEditor  1 2 6 or later  from th
73. nes menu new folder sr  Vend  center    Tras estos pasos  en el proyecto anterior deber    a  aparece    textit  src         subsection Creaci   o n de ficheros P Lingua     Para crear un fichero P Lingua debemos acceder a la ventane  ficheros P Lingua  Para acceder a esta ventana existen tres       begin  itemize   Vitem Seleccionamos con el bot   o n derecho del rat   o r    donde vamos a crear el fichero P Lingua  Este directorio c  encontrarse dentro de un proyecto con naturaleza Mtextit FV                                            8  imagenes rar 198 26 04 09 21 05 manu  lt  ii    gt   E menor pdt   2   Bremer 2105109 15 00 mana Te Hierarchy 5 Pleu   al    Ff perfitex 196 26 04 09 20142 manu   E    Bi ingua 2 pter loe cepe cna manu  f Javadoc  f Search   E Progress E console 51   eror tog  0   du2 80s zx 5  Y sitema p eps 196 26 04 09 20 42 manu Texipse Ex BE   Or Cas  Pr drama     d tesis tex 196 26 04 09 20 42 manu All coe 2182708      plinguaCorePlugin  Software Project Software Pro AZ    l punguacorePue copy thome 3E  8 35  plinguaCoreTests  Software Projects Software Prejec a en  1    e aor LnchangedPlignsafetyCopy  org gcn inguaplugn  E prueba  EI Prueba  bstractFactory     Gi PruebaEnlaces  E 12 Pruebasingleton  SB psystemProject  em  i  2 Trabajo SIA  El                                        Bin sre  pSystemProject       37    38    CHAPTER 1     PROJECT CREATION    Chapter 2    P Lingua file creation    For creating a P Lingua file  the P Lingua files creation
74. o n e bs  I Copy of com gen plinguaplugin sistema queremos simular  Este fichero debe encontrarse dent   Preanbkl   S  EI Copy of org cn pinguaplugin copy de un proyecto con naturaleza  textit P Lingua   aunque no e E 9   Elena         plinguacoro  E i currentouin   tn na Sabia Dienste rail  amewentre en formato P Lingua  basta con que esti  e  codifi   tdese        O plinguaPlugn  S y  oggnpi New   Jato de entrada reconocido por Mtextit pLinguaCore Vcopyr   PAingua  losen Goan   gin center  BELL  E ooon Quer with p  Vincludegraphios  videh 10cx   imagenes seleccion_ fichero    plinguaF  Broome  e TA p Nenatcenter  O me  pr ces  observamos que aparece un nuevo mem  u   Dentro s OT  ran  f   Copy Chc te ment   u   situamos el rat   o n sobre la opci   o n    E  Gg imager nuevo men   u   Dentro de este men   u   seleccionamos  Pr Ld it New Simulation    gt    aora Paste cule    9 esta  M Date pues Seleccionanos con el boti  o n izquierdo del rat  o r    Best  rook colacao  Ema queremos simular  Este fichero debe encontrarse denti    imager   sie spam   E  gt                                                      memor     f   mene Buld Path heno a    Refactor AleshfteT   E    Be  9   Search    Progress   E Console    error Log   SEE  B  Sn Er Br Fir Morgen      LA Export     er tete p lese ien  E 159 P  ngueCo   5 Refresh FS   Bee Se    ead rma  Asien Working Sets   aste   a   m  2 paco et    ADA E    Es plinguaco Run As   No changes in SYN      iPimeon  Debug As  gt   lorg ocn p
75. oftware Projects Software Pr  EI pnguacorePlugn copy     E plinguaCoreTests  Software Projects Software Pre  E 123 punguaCoreUnchangedPluginsafetyCopy   T   Primero pl      5  prueba  EI PruebaAbstractFectory  EJ PruebaEnlaces  El PruebiSingeton  e P psystemProject  om  8 99 Trabajo SIA   lt     gt              i                 T  memeriatex 23  gt  G ora gcn pinguaplisi   I  SmustorFestureswie            observamos que aparece un nuevo men    u    e  begin  center   Vincludegraphics sidth 10cw  imagenes proyecto creacion   enaicenter   Situamos el rat   o n sobre la opei   o n  textit P Linge  que aparece otro nuevo men  u     begin center   Vincludegraphios  vidth 10cm   imagenes ment_plingua_creac   end center   Dentro de este men   u   seleccionamos la opci   o n  tex  P System   Una vez hemos escogido la opci   o n anterior   ventana de creaci   o n de ficheros P Lingua         item Seleccionamos con el bot   o n izquierdo del rat  c  donde vamos a crear el fichero P Lingua  Este directorio c  encontrarse dentro de un proyecto con naturaleza  textit F    Posteriormente  accedemos a la pesta  na llamada  textit F   men   u  principal de Eclipse  Dentro de este men   u       aparecer   a  la ventana de creaci   o n de ficheros P Lirw      i                Ts Hierarchy                         ala             x                   No changes in SV    org ocn pingusplugn     IE    Javadoc   7 Search C  Progress   E console   3    Jemortog  Solfw  fsts 3  7S  Texipse Ga bE or G
76. on  which were previously stored  so the current simulation cannot take steps  back unless it takes at least a step forward     Step Back  This button causes the current simulation to take a step back     In the case that the specific simulation can take steps back  the next action  can be executed     Alternate Step  This button takes an alternative step  This action has not  been implemented yet  as it has not been defined precisely the external  interface of the simulators capable of performing alternative steps in P   Lingua     7 1 Configuration display    Starting from the simulation console  it is possible to visualize the current con   figuration of the simulation which is been currently executed  For doing so   left click on the button Show current configuration inside the simulation con   sole  Then  a new window will be displayed  This window displays graphically    64    CHAPTER 7  P SYSTEM SIMULATION    the current configuration  including the membranes which compose it  their la   bels  their polarizations and their associated multisets  as well as the rules of  the P system which is currently being simulated  This window is composed of    four different parts   Top bar   Left bar   Middle bar    Right panel                                                                                  Tio Ca Tao Fan iz Ca Is Ca I2 C2 Isa            Toja  2 2 2  d 2  fius Ca Fe Fara Ton Ca Faz Ca Tos Ca      SS 2 2   gt   Thue Ca Tana 6 Tii Ca Tia Cs   Ca for   6  Tin Ca  q e 
77. or log 37   Ip E     p Sen  EB pere MEE    En  ur nen usin bate   a  down    serertes emer re tant be resohed atine 76 7 8  E 11 00 04 375  Imo  senertes ener errare P syrene not sipporced ate 28   amp  18 Es expecting ane cf these m apoph 2009 0628 19 59 33 359  E Y      syma error  Encountered  3  at Ine 44 ar espect CE obama n 2009 06 28 10 59 19 953  ee een  E  G serte ener rid envronrer m tre 32  12 16 Amann 200 06 28 Irsa sn a  m        This mark will only appear until you have already saved the file with errors    in the hard disk     Chapter 4    File import    For modifying the format of a file which encodes a P system and include it into  a previously existent project  the import P system files window needs to be  accessed  For accessing this window  there are two different options     e hight click on the directory where you want to import the file     This    directory should be inside a project with a P Lingua nature assigned     plinguaplugin memo         File Edt Source Refactor Navigate Search Project Run P Lingua Latex LatexSymbols Window Hep                           5 8 de    5 B   0 QqQ  EEE a9 ii F BRPBPP  Per Ba a Ww  De Hi memoratex 33   Mborggen pinguaphugi    J  SimulatorFeatureswie        Box     igi com qualtyeclpse favorites  5c observamos que aparece un nuevo men   u    m x  EJ com qualtyecipse favortes te Wegin center     a l      I Conpatb  ty Vincludegraphios sidth i0cw  imagenes proyecto creacion      gt   EE copia Vendi center  2 ES   Preambl
78. org gen pinguapla       3 sequnda dvi  Trabajo SIA  18 Hierarchy E au m  4 segunda tex  Trabajo SIA           er   Javadoc     Search       Progress   E Console 23       Error Log 20   d03 8s 23  FO  y j rexipse ei Br rge Niogan y    f tenter 196 26 0 09 20 42 mana lpartatex exe gt  am Files MiKTeX 2 7 f0mt9 type1 bluesky crAl    0  gt  72     5 phinguaCorePlugin  Software Projects Software Projed   pagiatex exe gt  2 7 fonts typel bluesky cm cmittlO pfb    C             EI pnguacorePlugn copy   pdflatex exe    bluesky cm cmmilO pfb    C  Program Files t   c Be 20 4        Gy plinguaCoreTests  Software Projects Software Projec      pdflatex exe   S pfb    C  Progrem Files MiKTeX 2 7 fonts t     J plinguaCoreUnchangedPluginSafetyCopy No changes in    SVN    pdflatex exe   Files MiKTeX 2 7 fonts type1 bluesky cm c      org cn plnguaplugin      EI Primero pl pdfletex exe    fonts typel bluesky cm cmrS pfb    C  Progr    amp  B Proyecto pdflatex exe   ky cm cmr7 pfb    C  Program Files MikTex 2       Eg prueba pdflatex exe gt  C  Program Files MiKTeX 2 7 fonts typel b   YE PruebaAbstractractory pdflatex exe    MiKTeX 2 7 fonts typei bluesky cm cmsy7    11 PruebaEnlaces       pd  latex exe    typel bluesky cm cmtiiO pfo    C  Program I   pdflatex exe   m cmwtiO pfb      pdflatex exe   Output written on memoria pdf  65 pages        pdflatex exe   Transcript written on memoria  log     3 32 PruebaSingleton      43 Trabajo sin           lt     Hind memorla pdf   oro gcn plinguaplugin
79. orites test que contienen los P sistemas creados  Para ello  pulsamos cc   B WN SR    gt  Preamble  E  Compatib  ty ho en el proyecto y accedemos al men   u   textit New   E  amp    Biergem   EE copia e     0 Edpse  EI Copy of com  gcn plinguaphagin phios  width 10cm    imagenes menu_proyecto_new 3pg  El reambk     3 P Lingua  ony of ry eae     Ug css   BO ellengue   E   plinguacore  E jaf amend New   Jj  selecionamos 18 opei   o n  textit  Folder   Entone C d Q asserta  Vd org 92n plng pen in New Window  u  similar al que se muestra a continuaci   o n  ell  Wornping hoy In Akssh  tew   B  Al org gen ping duh idem     magenes menu new folder jpg   EI org gcn ping ES Copy Arc  BI org gcn ping  i copy Qualfied Name libimos  textit src  en el campo  textit Folder name   B opina    paste die textit Finish    ER EC ae Delete      S pungusCoret ath 10cm   imagenes menu new folder src jpg  3 1  58 d punguacorel 5  ccce for conte HARESH DONN el 4  E 1 p  nguaCorl paid path     i proyecto anterior deber   a  aparecer el directoric   E  EI Primero pl a  amp   Refact AkeShfteT    EE factor j a   a       Pruebadbstr lt  pay Import     gt  seo u  a A Export     an  SEE Refresh   rch     Progress   E console 53   Error Log    Bwo gos 2   S Trabajo SIA  Open Project Ek BE   Br Cj   Pr Gora censplnauephign     Close Project ale    80098  Close Unrelated Projects  Assign Working Sets        Add Remove Lisp Nature 3 Canes y      YR Add Perl Nature ic ad  Toggle ANTLR project nature   Run As   
80. pLinguaPlugin  User s Manual    Research Group on Natural Computing  University of Seville    Preamble    Thanks for downloading pLinguaPlugin  This document is a user s  guide for pLinguaPlugin  We hope you find it useful  If you have  any questions  please do not hesitate to send an e mail with them  to  mgarcia universidad gmail com     Yours sincerely     Research Group on Natural Computing  University of Seville     Contents    I    Installation of pLinguaPlugin    II Use of pLinguaPlugin    1    2    Project creation  P Lingua file creation  File editing   File import   File export  Simulation creation    P system simulation  7 1 Configuration display           s    25  29  39  AT  49  53  57    61    CONTENTS    Part I    Installation of  pLinguaPlugin    11    Before using pLinguaPlugin C   it is necessary to install it on the computer  where it will be used  To do so  it is necessary to follow the following steps     1  Install a version of Eclipse  3 4 or later   The last available version can  be accessed on the website http   www eclipse org     2  Install a version of ColorEditor  available in http    www gstaff org colorEditor     1 2 6 o later   By using this plug in  pLinguaPlugin   provides syntax  coloring  in other words  the elements of the P Lingua files used  such as  rules and objects  are colored so as to make them easier to identify at first  glance  If that plug in is not installed  there will not be syntax coloring   Instead  the entire specificatio
81. provided due to tha fact that maybe  future versions of P Lingua allow to include modules from different files     Once the options of the file to create have been selected  right click on the  button Finish  After that  the P Lingua file will be displayed     pSyste       45    46    CHAPTER 2  P LINGUA FILE CREATION    Chapter 3  File editing    Once a file which specifies a P system on P Lingua format has been created or  imported  the existing errors on the specification can be checked  This way  if  the specification contains errors  these will appear underlined  indicating their    location        Ii Eclipse Platform   T Eit Wavgate Search Project Run Pangua Wie Hep    cue 2 5 D   pom J  I m         BES   007   PPPRER POSE  TD rang exesourcevstar  E venonater  cath o Sl raskust 22          Es Uncategorized                                                       EL Fort and Colors EE E  E    sj a   Cate  um  Oe   E robens  savados  IB baciarten  EI Console       roris 1  RESTE  workspace La   erm    Date      20505 25 11 000a 375  mer mn  orroa       If you use the editor included in pLinguaPlugin and roll over the error mark   you will see a message describing the cause of the error     47    48           TIE Fuk Mara Search Project Run Feine Windom Heb    lipse Plat    CHAPTER 3     FILE EDITING                                                                                                                                       iti    Bei cis Bik O   SHG   da PPPPPP  f aa
82. pt xm s i 22 11 2006 14 08     6A4C9192   ada95  xl i i 22 11 2006 14 08  C940856F  jasp xmi   22 11 2006 14 08     30024102    assembiy r2000 xml i 22 11 2006 14 08     67BSEB12  assembly st7 xml       22 11 2006 14 08  801F6060    assembly x86 xml 22 11 2006 14 08     9B7DE9C7  ak   22 11 2006 14 08     7D87D70F  bomi    22 11 2006 14 08 48AE6220  batch  22 11 2006 14 08     41FC7796  bj xml   22 11 2006 14 08     Sti0D839  bel xml   22 11 2006 14 08     SAAEOSI1   beanshellcml 22 11 2006 14 08     748COFO6  bibtex  xmi   22 11 2006 14 08 78108AA0   alco I 22 11 2006 14 08     CC6C30E5    g  ij catalog dtd XML Document Typ     CO667F43   a cobol  xml  695 XML Document 22 11 2006 14 08     21836A04  coldfusion xml  XML Document 22 11 2006 14 08     75DC51B6   cplusplus  xml f  232 XML Document 22 11 2006 14 08 2900152F   csharp xml D XML Document 22 11 2006 14 08     47EDES1A      dsssl xml i  001 XML Document 22 11 2006 14 08     9c739803    eiffel xml f XML Document 22 11 2006 14 08     8FECOS29  TA envnen vml MI inca coloma tana   enneon      B   XML Document 22 11 2006 14 08  2BF05866                Bra Seleccionado 6 725 octetos en 1 fichero Total 747 936 octetos en 79 ficheros       13    El catalog  Wor Pad       Tb OR Yen ser renal Heb                         Cee Sl d    ONDE NAME  pasca     MODE MAME  patek  obe NAME  per i   a op  TIRET LINE GLOD  Ui  nperlen   gt   MODE NANE  Pup  E  MODE NAME    SMODE NAME   prolog   NONE Mille  progress   SIE Heer  MODE NAME  pv
83. puter eclipse    i u  Org eclipse     T     Org eclpse        GQ My Network Places                      A  ES                                     Details ES T T k  T i T Y os Org edipse     org eclipse     org epic de          org gcn plinguaplugin_1    Executable Jar File    Date Modified  mi  rcoles  27     a  de enero de 2010  17 50 org epic pe    org epic reg    cbg ed  or_     netsource       Size  1 03 MB                                                 Once the steps listed above have been followed  it is necessary to associate    the files whose extension is  pli to the ColorEditor  To do so  it is necessary to  follow the following steps     1  Launch the Eclipse IDE     2  Left click on the option Window on the main menu of Eclipse           ov  PPPBBB            Cy Uncategorized        Zonen SO       Anculineisrotaralabe          EE 39 creas  ie B cystenroject  SES Tres Sr       Br  c  Program              Et etes   arado  E Console  5 poda                                           3  Left click on the option Preferences on the deployed menu  Then  a new  window appears     15          4  Left click on the menu General  which belongs to the window mentioned  above  This menu can be spread in order to see its options        Preferences          5  Spread the menu General and  then  spread the menu Editors  which is  inside General     16       Preferences    casing   i    ty or pinned      Es Coloring Editor     Ecore Diagram     Ecore Tools Diagram  m EMF Compare   
84. tion     PsystemwizardParamet      t a  Piven p system ec un nuevo ment   u   Dentro   IN  gt   PB open simulation Console In sobre la opcil  o n Mextit      9               lt                 No changes in    SVN   jorg gcn plingusplugin                                je  gt     Javadoc    Search       Progress   E console  3   OJErortog   Dos    O  are an  8 SVN  org  pinquapligin                55    Export P System  inside this       ES mL  6 989 9   3       Preamble  El lenguaje UML  Edpse    Pinga  plinguaCore       plinguaPiugn             ng Fichero pli  pSystemProject src       Once the steps of any op the options mentioned above have been followed   the P system files export window appears        Select destination file features    Select the destination Fle Format and the P system file route       Availatle Output Formats    bin  E        Preserve format          Select destination fie      Erowse              Finish          Inside this window there are several fields and options  which are described    below     Available Output Formats  This field lists the different output formats rec   ognized by pLinguaCore   so that the user selects  from them  the format    56 CHAPTER 5  FILE EXPORT    on which the exported file will be encoded     Preserve Format  This option indicates whether the format of the file create  as a result of the export will be the same as the original one or not  In  such a case  the format selected on Available Formats will have no effect   
85. tonces  observamos que aparece un 8 Q Eltengue     8   plinguacore   Siem om vo men   u   Dentro de este men   u   situamos el rati  c   20 Ede        plinguaPlugn   Eee ciV  o n  textit P Lingua   Observamos que aparece otro nv      Ping  D org   Openin New Window mV  u   Dentro de este nuevo men   u   seleccionamos la op   9   pungux  Borg  Showin Alc Shiftew    lextit  Import P System      5 6 pinga  org   begin center       mi  El org  Er ame  includegraphics sidth 10cm   imegenes import psystem jpc EO insti        ji org  HE Copy Qualfied Name  end center  Odo  GRE  E Paste Cue tem Seleccionamos con el bot   o n izquierdo del rat   o r ae    E Ey   Delete PETN irectorio donde queremos guardar el fichero resultante de 1 ae  a te directorio debe encontrarse dentro de un proyecto con r  a em mc hrH Alk shift D jextit P Lingua   Posteriormente  accedemos a la pesta  na  Al BuldPath     u itimo  seleccionamos la opei   o n  textit  Import P Sysw     Si Refactor Alcs ShifteT    gt   fy   Ba Import  Y Y Bla   gt   Iam    gt     B    Search E Progress   E Console   les 232   z   Qd Refresh a rs SYN  lora gen plnguaphogin  7   AA Seas    G   PUN add Remove Lisp Nature          Wan ranas  gt    En Deusas   Wo change n om  Ee Tem    loro ocn plinguaplugn    sigh comParewth       i Prud Restore from Local History             5  9 Trabajo sta                       le       ip src   pSystemProject       e Left click on the directory where you want to save the file which resulted  from
86. tware Project    12  plinguaCorelinchangedPluginSafetyCopy  A Primero pl       E prueba  I PruebaAbetractFactory  T PruebaEnlaces  E 12  Pruebasingleton                                Ders          7 OO  avo gos 0  5   PS  eos   EO      Javadoc  4 Search   C  Progress   E Console 13  Tee 000000    pdflatex exe   am Files MiKTeX 2 7 fonts typel bluesky cr   g0  v  pdflatex exe   2 7 fonts typel bluesky cm cmitti0 pfb    C   pdflatex exe    bluesky cm cmmilO pfb    C  Program Files 1   rf  pdflatex exe   5 pfb gt  lt C  Program Files MiKTeX 2 7 fonts t  pdflatex exe   Files MiKTeX 2 7 fonts typei bluesky cm c  pdf latex exe gt   fonts typei bluesky cm cmrS pfb    C  Prog   pdflatex exe   ky cm cmr7 pfb    C  Program Files MikTex 2   pdflatex exe   C  Program Files MiKTeX 2 7 fonts typei b   pdflatex exe gt   MiKTeX 2 7 fonts typel bluesky cm cmsy     pdflatex exe    typel bluesky cm cmtiiO pfb    C  Program I             ime    No changes in sun   Jorg gcn plinguaplugin                            l        B psrstemproject pdflatex exe   m cmtti0 pfb    ms pdflatex exe gt  Output written on memoria pdf  80 pages      2 pdflatex exe   Transcript written on memoria  log  4  i  3 Trabajo sta Y  A      AIG 1 mi    ind Fichero pl   pSystemProject src       Then  left click on the tab called P Lingua on the main menu of Eclipse   Finally  left click on the option called New Simulation  which is inside  this menu     59           File Edit Source Refactor Navigate Search Project Run   
87. ua  EI Copy of org gen plinguaplugin copyd encuentre en formato P Lingua  basta con que est   e  codifi   9   Elengw    E O punguacore  68 5 currentuI06 10 06  Software Projects formato de entrada o salida reconocido por MtextitipLinguaCc     Ecipse            pinguertsin   amp  3 org  gcn plinguaplugin  Software Project     8i Pelingua  E org gen pinguapkugin copy2  item Posteriormente  accedemos a la pesta  na llamada  text         punguxc    I org gcn plinguaplugin copy men   u  principal de Eclipse  Por V  u ltimo  seleccionamo  E   plnguer  El org ocn linguepiogn copys este meni  tu   ei  TI org gcn plinguaplugin copy    end  itemize     8 38 ora acn pinguaplugin  memo  Software Projects Softy  B  E Cg imagenes Una vez efectuados los pasos de cualquiera de las opciones     E E tmp  amp ccederemos a la ventana de exportaci   o n de P sistemas  E    arbol membranas eps 196 26 04 09 20 42 manu En esta ventana podemos observar varios campos  u    celula eps 196 26 04 09 20 42 manu B      estructura entorno externo eps 196 26 04 0920       begin description  s      imagenes rar 196 26 04 09 21 05 manu      gt   memoria pdf T di   i memoria tex 213 2 05 09 16121 manu Jp Herarchy EN          perfil tex 195 26 04 03 20 42 manu  BB plingua 2  O tex 196 26 04 09 20 42 manu   sistema p eps 196 26 04 09 20 42 manu  d   tesis tex 196 26 04 09 20142 manu  8   pLinguaCorePlugin  Software Projects Software Projec  EJ plinguaCorePlugin copy    8 35 plinguaCoreTests  Software Projects Sof
88. uaEcipseGUI            amp  1 org gcn plinguaplugin  Software Projects Software Projects PlnguaEckpsePlugin     fa oro gen plngueplugin  memo  Software Projects Software Projects PinguaEcipsePluginDoc   E yl pLinguaCorePlugin  Software Projects Software Projects PlnguaCorePlugin New Folder      ay plinguaCoreTests  Software Projects Software ProjectsiPLinguaCoreTests       22 plinguaCoreUnchangedPluginSafetyCopy     ig prueba    12 Pruebasingleton    P psystemProject  13 Trabajo  SIA       Folder name       Advanced               On this menu  select a project with a P Lingua nature associated  write src on  the field Folder name and left click on the button Finish         New Folder ER   Folder  Create a new folder resource        Enter or select the parent folder   0rg gen plnguaplugn memo     gt       3d com  gen  plinguaplugin  test  Software Projects Software Projects PlinguaPluginTests    a ii com quelityeclipse Favorites  Software Projects Software Projects pLinguaQuality src pLinguaQuality   E E copia   68 JH  currentGUI06 10 08  Software Projects Software Projects PinguaEclipseGUI    8 Ip org gen plinguaplugin  Software Prajects Software Projecte PlnguaEckpsePlugin       i ora gcn plingueplugi memo  Software Projects Software Projects PinguscipsePlugnDoc      fa pLinguaCorePlugin  Software Projects Software Projects PlinguaCorePlugin New Folder       33 plinguaCoreTests  Software Projects Software Projects PLinguaCoreTests    3  y  plinguaCoreUnchangedPluginSafetyCop
89. waven  moe NAME  pytnon     cds  MODE NANE  rcbol   MODE NAMES   MODE NANE   ruby   Cebo    f    DE NANE  Evieer    For Help  press FL 2       iii  Modify the file catalog  inside the directory modes on the file  ColorEditor by including the next XML tag       MODE NAME  plingua  FILE  plingua xml   FILE  NAME  GLOB 2   pli         as a child tag of  lt MODES gt      El catalog  Wor Pad       Tb OR Yen ser renal Heb    Oe 60 4 sear B                   MODE NAME  paaeal    MODE NANES pauch      MODE NANE  perin   iet Pp  Ops wine php     php  cha   MODE NAME  pl aal    MODE NAME     SHODE NANE  pcolg    MODE NAME  peogreco    MODE NES properties      MODE NANE  vwave      enone NAME pgE non   MODE NANE  rcbol    MODE NANE  rpn spec  E   rine mame si B  HOPE NAME  ruby  Pus  ug      For Hep  secs Fl 2       iv  Include in the same directory modes the file plingua zml included  on this website     Copy the file org gen plinguaplugin_1 0 1 jar inside the directory plugins   which is inside the directory where the installation of Eclipse is located     14     amp  plugins  File Edit View Favorites Tools Help    Back   y SO  search Folders   Folder Sync  o Oo 8      B    Address     plugins       File and Folder Tasks                 Rename this file    gy Move this file   IP  Copy this file     Publish this file to the  Web                         E mail this file  X  Delete this file                   Other Places       edipse    E  My Documents El   C Shared Documents   3 My Com
90. work Connections    o Internal editors O External programs  Perspectives  Search Site Manifest Editor     Security   Source Not Found Editor  Startup and Shutdown State Machine Diagram Editor  Web Browser     State Machine Diagram Editor  w  Workspace n  E  Ant      l Table of Contents Editor  ANTLR Editor e  Target Editor  a AEA  7  Task Editor    Es o xd Text Editor  uci eta Sum Activity Diagram Editor BEEN  E  Ecore Diagram AJ UML Class Diagram Editor          Ecore Tools Diagram Sere EE  EMF Compare  Help  E Install Update Cancel  Java  JET Transformations  Lisp  E Metrics Preferences   amp    Model Validation  fH ORB Studio  E  Perl EPIC   Plug in Development  E Run Debug  W  Soyatec  E  Tasks     Team  5  Texlipse  E UML  E  UML2 Diagrams              12  Left click on the button OK  After doing so  the current window is closed     13  Left click on the option Syntax Coloring Editor on the menu which is on  the bottom part of the window        Preferences     type filter text    B     E  E   7   E    0 0 00000000000000b00    General   E Appearance  Capabilities  Compare Patch  Content Types  Editors   File Associations   amp  Text Editors   Keys  Network Connections  Perspectives  Search  Security    Startup and Shutdown    Web Browser  E Workspace  Ant  ANTLR Editor  ATL  Buddies  CDO  Coloring Editor  Ecore Diagram  Ecore Tools Diagram  EMF Compare  Help  Install Update  Java  JET Transformations  Lisp  Metrics Preferences  Model Validation  ORB Studio  Perl EPIC  Plu
91. x ri SYN Gora gen pinguaplugn        mo 2                Preamble  Ellenguaje UML  Edpse     Pingus   O punguaCore   pnguePlugin               0  src   pSystemProject       Then  left click on the tab    called File    on the main menu of Eclipse     42 CHAPTER 2  P LINGUA FILE CREATION                                Edt Source Refactor Navigate Search Project Run Pingus Latex Latex Symbols Window Help       0 Q  B   G imo    i3 i  4 IBPBPPP                             D a   R memoriastex 520 Sa fon B   subsection Creaci   o n de proyecto  am     Para utilizar  textit plinguaPlugin   lo primero que hemos 6         e   emph  proyecto   Un proyecto es un directorio de trabajo en     organizaremos los P sistemas relacionados entre s   i  que v Babs  para un determinado fin  Para ello  accedemos a la pesta  ns Sy  amp  Q Heras Un    textit File  en el men   u  principal de Eclipse  meti       eae    s   Ping   begin center     Gas  um m  inoludegraphios  width  10cm     magenes Ec1ipse jpg  Edipse e seco     Refresh FS  end center  Fr Pings        S reer  Convert Line Delimiters To B Observamos que aparece un men   u  con distintas opciones  E plinguac    men  u  situamos el cursor en la opcil  o n Mtextit New   4 6 0 uio   deni gus observamos que se abre un nuevo men   u   Dentro de este nue 8i  iih Workspace  gt  encontramos la opciV  o n  textit Project  ldots   Al selecci 8    ne  Fou  que se abre una nueva ventana   Pss Import    En esta nueva ventana  accedemos al men   u  
92. xplore the objects of its associated  multiset as well as its children membrane in an easier way           Cenfiaurston A  Sn merbrere ID C Label 1  Charge  t      Enarernent A  prats  ensrunrent   8 6 9      Senne n  a  web   Noe    wall x    Memb  t   ban   ME Bio Ca Tasso Ts Ca Tio Ca hi C  Ts Ci ra  on les  7 Ton   kn 2 2    2 2             W Membrane Id  19    T      Ca Tajo Ca I fio  Ci    Maa Cs    2    3    faz Cs C   foja  7 hn Ca  2  Tin Ca Tis Cs Tay Ci Ts  9 2  gt   we  13   kae    ED Kun hy Tan fo fon by an ajo an fe  za    Web    raa  Mont   Fiz Ci Co foi      E                                                 BY SA    
93. y   EE  gt  prueba    32 Pruebasingleton      P psystemproject   32 Trabsjo_sIA                Felder name   sc             After following those steps  the directory src should appear on the project        Fie Edt Source Refactor Navigate Search Projet Run    OR          Pelingua Latex Latex Symbols Window Help             CET Bai dis Bit 0O Q  558G im04  3 9    BPPPPP  ig Po isugB4ydqmu  S ES e 7 TO  M memoriatex ES   db org gen pinguaphigi      SimuatorFestureswWie   Tons XB     ij com gcn plinguaplugin test  Software Projects Softwal      begin center  as ba  Ej con singueplugn auxiry Yincludegraphics sidrh 10cw  imagenes menu new folder jr  9  is ig com qualityeclipse favorites  Software Projects Softw   end center  1  EI com qualtyecipse favorites test En este men   u   escribimos  textit src  en el campo  texti   B WN Sa    EI Conpatibity  V copia  I Copy of com gen plinguaphugin  EJ Copy of org gcn pinguaplugin copy3     Ei crrentGUID6 10 09  Software Projects Software Proj  56 jid org gcn plinguaplugin  Software Projects software Pr  EI org gcn pinguaplugin copy  EI org gcn pinguaplugin copy  1 org aen plnguaplugin copy  EI org gcn pingueplugin copy  E  i org gcn plinguaplugin memo  Software Projects  Softw   Gi imagenes  E Gy tmp  B arbo membranas eps 196 26 04 09 20 42 manu    celula eps 196 26 04 09 20 42 manu  estructura entorno externo eps 196 26 04 09 20              pulsamos el bot   o n  textit Finish          begin center   Vincludegraphics sid h i0cw  image
    
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