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DataPaq™ 2.40 User Manual

1. Figure 36 Test Scan Time Export Results Page 34 of 86 DataPaq User Guide If the format is not correct an error will be shown this is detailed below Configure DataPaq LAL VL File Export fete eder t File Details Excel File format Text File format Text Export Template ed a soci lt if scanTimeQuestionsEnabled gt Scan Time Questions lt list scanTimeQuestions as question gt question shortName question answer lt list gt Date RackBarcode Row Col tubeBarcode OrientationBarcode lt list racks as rack gt lt list rack containers as container gt iscandate datetime rack barcode container textRow container col 1 contain lt list gt lt list gt Apply all changes and close window Cancel all changes and close window Figure 37 Test Scan Time Export showing error in format This has a list close missing to introduce an error the result is shown below E Export Failure OK Figure 38 Test Scan Time Export Results showing error in format Once this configuration is established it can be saved and the text export will now be used DataPaq User Guide Page 35 of 86 Linear 1D Barcode Scanner Configuration Should a linear barcode scanner be installed it can be configured via Configure gt Options VE File Configure Help Add Scanner Remove Scanner
2. cccscccsssecccsseccessceceeececsnececeneceeencessuecesaecessuecensneeeseaeess 64 2 ON FI EE RE EE EE EE E 65 COT EEE EE E E TT 65 Pl 66 Me 66 Page 40f70 DataPaq User Guide PL cane icc eter ares eres ected ek te cence ecto NE EE 67 PROS SIG CAV ONS asus cigs tesactnns cece cee spac E 67 APPENA gt EEE EE EEE EE 68 CUSTOMISIN EXPOTt TEXT FOT Luse een 68 DateFormat Nr 70 Vo os e h OE EEE MEN 72 We 72 APOENA DEE EEE aa ec aco dco andesite aaa 73 CEN Je 73 DataPaq User Guide Page 5 of 86 Table of Figures Figure 1 Linear Rack Barcode Scanner Version 2 attached to Ziath 2D barcode scanner 12 Figure 2 Licence Registration Dialogue cccccccsssccccceseccccesecceceeseceeeeeceeeeeeceeseuecessueceesaeseeetas 13 Figure 3 No Internet Connection Dialogue rrrrnrnnnnnnnnnnnrnnnnnnnrnnnnnnrnnnnnnrnnrnnnernnnnnernnnnnennnnnnnsnnnnnnseene 13 Figure 4 Manual Licence Registration Dialogue cccccccessccccessececeenececceesceeeeeseceseueeceeseneeeeeas 14 Figure 5 Manual Licence Registration Webpage cccccccsssecccessececeesececeeeeeeeeeeseceeseeceeseeneeetas 14 Figure 6 Manual Licence Registration DOWnlOad cccccsesccccessececeesececeeecceeeeseeessuecessuneceesees 14 Figure 7 Add Scanner Configuration ccccccccssccccessecccceseccecescceceusececeeeceeseesceesauecessegeceesaneeeetas 15 Figure 8 Main User Interface Ne
3. server is the name or IP address where the database is running and the port is where the MySQL server is listening The database is the name of the database to be connected to Note that this is not the defau t Microsoft server but an alternative Open Source version this is due to licensing restrictions from Microsoft 5 Username This is the username to use to connect to the database 6 Password This is the password to use to connect to the database note that it is stored on the hard drive in a non obvious format but still in a format which with determination can be read by a third party The Test Connection button will use the above properties and attempt to connect to the database in question If the connection is successful the following dialogue will appear a Connection Sees Connection successful To test the connection enter an SQL select query to retrieve information from the database select count barcode from rack Test Connection Figure 50 Successful Connection Dialogue 1 From here some SQL can be entered which will be executed against the database The results of the call will be displayed in a separate dialogue Connection confirmed Er Row 1 count 1 Figure 51 Successful Connection Dialogue 2 Page 44 of 86 DataPaq User Guide Database Script To access the configuration go to Configure gt Options as shown hj File Configure Help Add Scanne
4. Configure Scanner Add Rack Import Rack Figure 39 Menu Configuration Selection The following window will appear Configure DataPag mt r Ed Barcode Scanner database Export LAL tilt SF Default File Pattern Example file name Default export directory C Users Kay Desktop Browse File Details _ Append file data to existing file Does not apply to XML exports Automatic Export Export On Read Do not automatically export a file C Automatically Export File if no read errors occur C Automatically Export File even if read errors occur Export Type Excel Select this to export a single file for each scanned rack Open results file on save _ Open File After Saving Apply all changes and close window Cancel all changes and close window Figure 40 Configuration window Click on the Barcode Scanner icon Barcode Scanner Figure 41 Barcode Scanner Icon Page 36 of 86 DataPaq User Guide The following configuration options are shown E Configure DataPaq Linear 1D Barcode Scanner settings Select the type of scanner that you wish you use Ziath Linear Scanner y Ziath linear barcode scanner settings _ CODABAR VW CODE 128 CODE 39 C CODE 93 _ EAN 13 JEANS 20f5 CuPc A UPCE _ UPC EAN EXTENSION Apply all changes and dose window Cancel all changes and dose window Figure 42 Configure Barcode Dialogue There are fi
5. IE jarcode Scania Database Export File Details Excel File format Text File format File Name Default File Pattern Example file name Default export directory C Users Kay Desktop File Details Append file data to existing file Does not apply to XML exports Automatic Export Export On Read Do not automatically export a file C Automatically Export File if no read errors occur C Automatically Export File even if read errors occur Export Type Excel Select this to export a single file for each scanned rack Open results file on save Open File After Saving Cancel all changes and dose window Figure 47 Configuration Front Page DataPaq User Guide Page 41 of 86 To access the database configuration click on the Database Export icon and the following window will appear za Configure DataPaq AL Miki ee OP ee Barcode scanner File Export CAP Export On Read Do not automatically export to the Database O Automatically Export to the Database if no read errors occurr C Automatically Export to the Database even if read errors occurr SQL Script Preview and Test Script Figure 48 Database Configuration Front Page To access the configuration click on the Connection tab var LAL Configure DataPaq Idd File Fag ner Time out settings Pen ide Fidel Scan Time Questions Activators Database details Select database t
6. PRACTICAL INNOVATION DataPaq User Guide DataPaq Version 2 40 Manual Version rev 1 DataPaq User Guide All Rights Reserved Ziath and DataPaq are registered trademarks of Ziath Ltd No part of this publication in either its printed or electronic format may be copied reproduced or transmitted in any form or by any means electronic or mechanical for any purpose involving resale for profit or gain through any form of paid membership or subscription service without the express permission of Ziath Ltd DataPaq User Guide Copyright 2008 2009 2010 2011 2012 2013 2014 Ziath Ltd Revised 28 07 2014 This is Version 2 40 of the DataPaq User Guide Table of Contents MOGUO cease eestor cere pve ctr ps rie te cin ssc EE EE sae een ones 10 TO Connect DY Fenes desk 10 KN 10 Multirack Scanner Installation ZTS A4 rrrrrrnnnnrnnnnnnnnnnnnnnnnnnnrnnnnnnnernnnnnnnnernnnnnnnnennnnnnnnnnennnnnnnenenne 10 High Speed Scanner Installation ZTS A6 cccccccccessseccceceesecceceeeeseceseseeeeeceseeeeeeeeeeseueeeeeeeeees 11 Deep Focus Scanner Installation ZTS AV6 and ZTS AV62 runnrnnnnnnnnnnnnnnnnnnrnnnnnnrnnnnnnrnnnnnnsvnnnnnn 11 Express Scanner Installation ZIS EXP riseire rra E E OAE 11 Linear Rack Barcode Scanner Version 2 Installation ZTS 1DR2 ccessecccceeeseeceeeeeeeeeeeeeeees 12 RD 12 ORTI Ne 12 Manual REEI 0 EE EE EE eee 13 re RE ET 0 EEE 15 MINN 15 MENT 15 MoRo 16 R
7. C Automatically Export File even if read errors occur Export Type Excel Open results file on save Open File After Saving Select this to export a single file for each scanned rack Figure 66 Front page of Options Menu Auto Repeat can be accessed in Other Settings as shown below da EE EE ER e Export bar code scann Play sounds when scan in completed Sound on scan failure Sound on scan success Auto repeat settings Automatically carry out a repeat scan if there are failures Number of times to repeat Optical Notch Detection Settings Turn optical notch detection on Select COM port Datahace Evnort er Database Expor Configure DataPaq Cancel all changes and close window Figure 67 Other Settings Configuration To activate Auto Repeat click the check box and then select the number of times the scanner will repeat after a tube has failed to read This can be useful if the scanner is knocked halfway through a read DataPaq User Guide Page 55 of 86 Sound Settings DataPaq can be configured to play a sound when a rack is correctly scanned or scanned with a failed well The options are accessed by going to Configure gt Options and click on Other Settings in the configure panel Pr Configure DataPaq MiO g L sa MMII mar P File Export Barcode Scanner Database Export Time out settings Scan Time Sound settings Play sounds w
8. Description Deep Focus 2D Barcode Scanner Version 2 Model Number ZTS AV62 adheres to the requirements of 89 336 EEC for EMC and 73 23 EEC for low voltage safety based upon adherence to the following standards EN 55022 2006 A1 2007 EN 61000 3 2 2006 EN 61000 3 3 2008 EN55024 1998 A1 2001 A2 2003 IEC 61000 4 2 2008 IEC 61000 4 3 2008 IEC 61000 4 4 2004 IEC 61000 4 6 2008 IEC 61000 4 8 2009 IEC 61000 4 11 2004 Designed manufactured and distributed by Ziath Ltd Nuch p Neil Benn Director DataPaq User Guide Page 79 of 86 ROHS C Ziath Ltd The Studio High Green Great Shelford Cambridge CB22 5EG Registered as a limited company in England amp Wales Ziath Ltd certify with sole responsibility that the following equipment Description Deep Focus 2D Barcode Scanner Version 2 Model Number ZTS AV62 adheres to the requirements of Restriction of Hazardous Substances Directive European Directive 2002 95 EC RoHS and are considered to be verified as RoHS compliant Levels are beneath the stated maximums detailed below ROHS restricted Substance Cadmium and its compounds Mercury and its compounds Hexavalent Chromium and its compounds Lead and its compounds Polybrominated Biphenyls PBB Polybrominated diphenyl ethers PBDE 1000ppm 0 1 weight Designed manufactured and distributed by Ziath Ltd Nuch Pr Neil Benn Director Page 80 of 86 DataPaq User Guide Zia
9. The exports Scan Time Questions to the export file Line 3 This puts a blank line into the output file Line 4 This instructs the system to run through every question in the system The questions are listed in the same order as they are asked In the following section each question is called question Line 5 This retrieves each question and lists the short name followed by a colon and the answer to the question Line 6 This tells the system to go back to line 4 until all questions have been processed Line 7 This outputs a blank line into the file Line 8 This closes the if detailed in line 1 The templating system is an industry standard entitled called FreeMarker http freemarker org and has much more capability than described above it even allows the results to be exported as a webpage if required visit the FreeMarker site for more information Should any assistance be required for formatting requirements contact Ziath at support ziath com Date Format Symbols eter fbsteorlimecomponen Examples y hr ee O Mo Monthinyear ao rowno Jo Page 70 of 86 DataPaq User Guide normer a ownam Jo tour inam om iia 2 nemner 30 ss m o Millisecond Time zone Pacific Standard Time PST GMT 08 00 CE DataPaq User Guide Page 71 of 86 Z Appendix C Warranty This document sets out the repair service the warranty offered by Ziath Limited Ziath for the Z
10. 4 Manual Licence Registration Dialogue Follow the steps provided and click on the link shown above Click Save Device ID and save the file to the Desktop Navigate to the link shown either by clicking on it or by typing it directly into your browser Select the file that was just created on the Desktop Enter the Licence Key Click submit Practical Innovation Ziath Licence Registration Please enter your licence file and licence key below Licence File Choose File No file chosen Licence Key submit Copyright 2013 Ziath Ltd Figure 5 Manual Licence Registration Webpage The browser will show this page Practical Innovation Ziath Licence Registration Please click here to download the licence file please note you may need to right click and select Save Link As or Save target as to receive the license text as a file Once you have downloaded the file enter it into the licence dialog of your product to complete the licence registration Copyright 2013 Ziath Ltd Figure 6 Manual Licence Registration Download Download the licence file by right clicking on the here link Select Save Link As Firefox and Chrome or Save Target As Internet Explorer Save the file to the Desktop Return to the DataPaq user interface Select Load Licence File Load the downloaded file from the last step DataPaq will register the installation If you do not have a licence key or
11. Settings Time Out Settings allows configuration on how long the scanner will attempt to re scan should there be some read fails Failure to read the barcodes is usually caused by damaged barcodes or when the scanner is being used in areas of high light To configure the settings go to Configure gt Options T Add Scanner Remove Scanner Configure Scanner Add Rack Import Rack Figure 56 Select options menu The following screen below will appear Configure DataPag LA w V G h Barcode Scanner Database Export Time out settings File Details Excel File format Text File format File Name Default File Pattern Example file name Default export directory C Users Kay Desktop Browse File Details Append file data to existing file Does not apply to XML exports Automatic Export Export On Read Do not automatically export a file C Automatically Export File if no read errors occur C Automatically Export File even if read errors occur Export Type Excel Select this to export a single file for each scanned rack Open results file on save Open File After Saving Apply all changes and dose window Cancel all changes and close window Figure 57 Configure dialogue DataPaq User Guide Page 49 of 86 Select the Time Out Settings option and the following window will appear Configure DataPaqg vnr HARE ru am
12. Then click on Configure gt Configure Scanner You will see the following Configure Scanner Name Twain connection Deep Focus Rack Scanner AVAG TWAIN w Swap Al position Cancel OK Figure 27 Configure Scanner Interface Fill in the name for the scanner and from the drop down menu Twain connection select the Multirack Scanner Where it previously displayed lt new scanner gt you will now see the name you gave the scanner 1 The types of racks that are being used will need to be added Click on Configure gt Add Rack TE File Add Scanner Remove Scanner Configure Scanner oad Rack gt Add a new rack to the scanner Figure 28 Adding Rack to the Multirack Scanner 2 A prompt appears to choose the mask that is being used on the scanner From the drop down menu choose the configuration of racks There is also a diagrammatical representation below the drop down menu Page 26 of 86 DataPaq User Guide or PN Figure 29 Choosing the mask type for the Multirack Scanner 3 Click on Choose rack types in the lower right corner of the window 4 Choose the rack types to be placed in each location Please note that only racks that fit into the location are displayed for the location Choose the racks type for each nest Choose rack type for nest 1 9x9 CryoRack Choose rack type for nest 2 lt Back Next gt Figure 30 Choosing the Rack Ty
13. be automatically exported The options are Text Excel and XML Open file after saving if this is selected the file will be opened directly after saving according to the type of file it is Excel will open excel files and Notepad will open text files The second tab entitled Excel File Format allows the editing of the Excel file format columns The dialogue shown below allows this function Page 30 of 86 DataPaq User Guide 4 Bim MANN File Configure DataPaq aim ger Database Export Time out settings Scan Time Questions Activators Other Settings stails Excel File format Tey File format Excel Export Template Data Type Header Text Cell Formatting DATETIME Scan Time d M yyyy HH mm RACK BARCODE Rack Barcode ORIENTATION BARCODE Orientation Barcode TUBE ROW TEXT Tube Row TUBE COLUMN Tube Column TUBE BARCODE Tube Barcode No error v Write Excel Header Add Column Remove Column Apply all changes and close window Cancel all changes and dose window Figure 34 Excel Export Template The details of the user interface are as follows Excel File Format Each line represents a column in the export file The first line represents the first column in the Excel sheet the second line as the second column and so on There are a limited number of parameters shown Should further Data Types wish to be entered click on Add Column and then cli
14. below w File Configure Help Add Scanner Remove Scanner Configure Scanner Add Rack Import Rack Figure 62 Accessing Options from the Configure menu The following window appears E Configure DataPaq miO Sg Idd Sa Barcode Scanner Database Export File Details Excel File format Text File format File Name Default File Pattern Example file name Default export directory C Users Kay Desktop Browse File Details Append file data to existing file Does not apply to XML exports Automatic Export Export On Read Do not automatically export a file C Automatically Export File if no read errors occur C Automatically Export File even if read errors occur Export Type Excel _ Select this to export a single file for each scanned rack Open results file on save Open File After Saving Figure 63 Configure Dialogue Click on the icon Activators When the Ziath Linear Reader attached to the system detects the linear barcode on the side of the rack the rack will automatically be scanned as shown below DataPaq User Guide Page 53 of 86 ua Configure DataPaq IILI i i a R Erea e r 6 a Dr rear e a o a R iae Ea ao oster AOT aea Activators Belte aeee Activator Settings Ziath Scanner Settings Ziath Scanner Active Plate Group to read Read Duplicate Barcodes Delay between Barcodes in seconds Cancel all changes and dose wind
15. compounds Lead and its compounds Polybrominated Biphenyls PBB Polybrominated diphenyl ethers PBDE Designed manufactured and distributed by Ziath Ltd Nuch Pr Neil Benn Director Page 82 0f 86 DataPaq User Guide Ziath Ltd The Studio High Green Great Shelford Cambridge CB22 5EG Registered as a limited company in England amp Wales Company number 05598930 Ziath Ltd certify with sole responsibility that the following equipment Description Multirack 2D Barcode Scanner Model Number ZTS A4 adheres to the requirements of 89 336 EEC for EMC and 73 23 EEC for low voltage safety based upon adherence to the following standards EN 55022 1998 Class B EN 55024 1998 EN 61000 4 2 1995 A1 1998 A2 2001 EN 61000 4 3 2002 A1 2002 IEC 61000 4 4 1995 A1 2001 A2 2001 IEC 61000 4 5 1995 A1 2001 IEC 61000 4 6 1996 A1 2001 IEC 61000 4 11 1994 A1 2000 IEC 61000 3 2 2000 IEC 61000 3 3 1995 A1 2001 EN60950 Designed manufactured and distributed by Ziath Ltd Nak p Neil Benn Director DataPaq User Guide Page 83 of 86 ROHS C Ziath Ltd The Studio High Green Great Shelford Cambridge CB22 5EG Registered as a limited company in England amp Wales Company number 05598930 Ziath Ltd certify with sole responsibility that the following equipment Description Multirack 2D Barcode Scanner Model Number ZTS A4 adheres to the requirements of Restriction of Hazardous Substances Dir
16. equipment Description Single Tube 2D Barcode Scanner Model Number ZTS S2 adheres to the requirements of Restriction of Hazardous Substances Directive European Directive 2002 95 EC RoHS and are considered to be verified as RoHS compliant Levels are beneath the stated maximums detailed below ROHS restricted Substance Cadmium and its compounds Mercury and its compounds Hexavalent Chromium and its compounds Lead and its compounds Polybrominated Biphenyls PBB Polybrominated diphenyl ethers PBDE 1000ppm 0 1 weight Designed manufactured and distributed by Ziath Ltd Nuch p Neil Benn Director Page 86 of 86 DataPaq User Guide
17. every well is either read or Automatically export even if read errors occur always export even if a tube is not read DataPaq User Guide Page 47 of 86 All the data which is uploaded will be in one single transaction Therefore if there is a problem with the update the entire update will be cancelled avoiding part racks from being uploaded Example We shall take an example of a 96 tube rack as follows Rack Barcode plate_pdev Well barcodes are from WELLBARCODE 0 Oto WELLBARCODE 7 11 Using the script of insert into rack id barcode values RACK_UUID LINEAR insert into tube id rack_id rack_col rack_row barcode values WELL_UUID RACK_UUID COL ROW BARCODE We would achieve the following sql statements insert into rack id barcode values 62d0a1c2 27e7 43d3 bf4a 3cOad6bb7b11 plate pdev insert into tube id rack_id rack_col rack_row barcode values f9c6cfee 803a 403d aee4 d8b57b03844e 62d0a1c2 27e7 43d3 bf4a 3cOad6bb7b11 0 O WELLBARCODE_0_0 insert into tube id rack_id rack_col rack_row barcode values b468147c cOc2 4e00 ad31 O0c50df4b976e 62d0a1c2 27e7 43d3 bf4a 3cOad6bb7b11 1 0 WELLBARCODE 0 1 insert into tube id rack id rack col rack row barcode values e10855a3 af8f 4c28 94f4 7bf035ada715 62d0a1c2 27e7 43d3 bf4a 3cOad6bb7b11 11 7 WELLBARCODE_7_11 Page 48 of 86 DataPaq User Guide Time Out
18. file Before plugging the scanner in or installing DataPaq install the driver from either of these two sources Double click setup exe to initiate the setup program and follow the on screen instructions Release the transport lock underneath the scanner Connect the scanner to the computer and install DataPaq Express Scanner Installation ZTS EXP 1 2 3 4 Install the controller and imager driver The driver for this will be on the installation disk in the folder Express Scanner Driver Alternatively to ensure the most current version is being used download it from http www ziath com index php downloads software manuals If downloading from the website extract the zip file Before plugging the scanner in or installing DataPaq install the driver from either of these two sources Double click setup exe to initiate the setup program and follow the on screen instructions Connect the DIN power cable from the controller to the Express Connect the HDMI cable from the controller to the Express Plug the power cable into the controller DataPaq User Guide Page 11 of 86 Plug the USB cable into the controller but not into the computer Connect the power supply to the mains Turn the controller on wait for the red lights to first flash and then go out Plug the USB cable into the scanner gt 6 T 8 g 10 Wait for the PC to detect and initialise the scanner Plug the USB cable into the PC 11 Ins
19. other equipment or persons or by failure to operate and maintain the product in accordance with the instructions set forth in this user manual 5 The costs of any repair or replacement made within the terms of this warranty will be borne by Ziath 6 Ziath has no liability or responsibility toward the purchaser of this product other than for repair or replacement of the original product as specified in this warranty Page 720f86 DataPaq User Guide Appendix D CE and RoHS Certificates Please see the following pages for the CE and RoHS certificates for all devices detailed in this manual Ziath Ltd The Studio High Green Great Shelford Cambridge CB22 5EG Registered as a limited company in England amp Wales Company number 05598930 Ziath Ltd certify with sole responsibility that the following equipment Description Single Linear Barcode Scanner Model Number ZTS 1DR2 adheres to the requirements of 2004 108 EC for EMC based upon adherence to the following standards EN 55022 2006 A1 2007 Class B EN 55024 1998 A1 2001 A2 2003 IEC 61000 4 2 2008 IEC 61000 4 3 2008 IEC 61000 4 4 2004 IEC 61000 4 5 2005 IEC 61000 4 6 2008 IEC 61000 4 8 2009 IEC 61000 4 11 2004 Designed manufactured and distributed by Ziath Ltd ap Neil Benn Director DataPaq User Guide Page 73 of 86 RoHS 2 Ziath Ltd The Studio High Green Great Shelford Cambridge CB22 5EG Registered as a limited co
20. 11131602 30011131659 40011131633 50011131639 6 0011131691 DataPaq User Guide Page 65 of 86 L Text The text output is formatted to an initial default format with the column headers defined for the output and the necessary information detailed as shown below Date RackBarcode Row Col tubeBarcode May 14 2009 9 46 68 PM BAR L A 1 1913589318 May 14 2009 9 46 08 PM BAR L A 2 1913589311 May 14 2009 9 46 08 PM BAR G1 A 3 16013589312 May 14 2009 9 46 08 PM BAR L A 4 19813589313 May 14 2009 9 46 08 PM BAR L A 5 19813589314 May 14 2069 9 46 68 PM BAR L A 6 1613589315 May 14 2069 9 46 08 PM BAR L 7 1613589316 May 14 2009 9 46 08 PM BAR L A 8 EMPTY May 14 2009 9 46 68 PM BAR AL A 9 1613589318 May 14 2009 9 46 08 PM BAR L A 19 1613589319 May 14 2009 9 46 88 PM BAR L A 11 1613589328 May 14 2009 9 46 08 PM BAR L A 12 1613589321 May 14 2009 9 46 08 PM BAR L B 1 16813589369 May 14 2009 9 46 08 PM BAR G B 2 1613589368 May 14 2009 9 46 08 PM BAR L B 3 EMPTY May 14 2009 9 46 08 PM BAR L B 4 1613589386 May 14 2009 9 46 68 PM BAR L B 5 1813589385 May 14 2009 9 46 08 PM BAR L B 6 1913589384 May 14 2069 9 46 68 PM BAR L B 7 1613589363 May 14 2009 9 46 08 PM BAR L E 8 1613589362 May 14 2009 9 46 08 PM BAR L B 9 16813589361 May 14 2009 9 46 68 PM BAR 1 6 10 16135893a0 May 14 2009 9 46 08 PM BAR L B 11 1613589298 May 14 2009 9 46 08 PM BAR L B
21. 12 19813589299 MARIA ARPA AURA PAPA AU AIP Pa A Figure 80 Example Text Output Should Scan Time Questions be enabled the answers to the questions will be displayed at the top of the file However should this format need to be changed see Appendix B for detailed instructions XML This format is used for integration and is a self describing fixed format Should Scan Time Questions be enabled the full details of the Scan Time Questions will be added as discrete elements at the top of the file Should further information be required on this format contact Ziath Page 66 of 86 DataPaq User Guide Appendix A Reserved Words In data export there are a number of words that are used to signify missing tubes tubes that could not be read column headers etc For backwards compatibility reasons these words will not change between versions of DataPaq and are listed below NOREADO As an output to signify a no read when a 1D Rack Barcode Scanner is attached NOREAD1 and the code cannot be read when DataPaq is running in headless mode NOREAD2 The number increases from 0 if the scanner has more than one rack NOREADn EMPTY As an output in the Excel and text output formats in the place of a container barcode to signify that no tube was detected DECODE FAILURE As an output in the Excel and text output formats in the place of a container barcode to signify that a tube was detected but the barcode could not be deco
22. 6 DataPaq User Guide Page 9 of 86 Introduction The following is a brief set of instructions on installing and configuring your DataPaq application To Connect by Remote Control Please refer to the manual DataPaq Remote Control User Manual This can be found on the supplied disk or downloaded from www ziath com Installation Successful set up of the scanner requires the installation of a A driver program to run the scanner device and b The DataPaq scanning software program These programs are provided on the installation disk alternatively the most current versions can be downloaded from the Ziath website Installation instructions are below Download and install the appropriate driver before connecting the scanner and installing the DataPaq software If Windows Vista Windows 7 or Windows 8 is the used operating system the installer will request permission to install onto the computer Ensure access is granted to allow DataPaq to install BEFORE INSTALLING DATAPAQ ENSURE THE TRANSPORT LOCK ON THE SCANNER IS IN THE UNLOCKED POSITION NOT APPLICABLE FOR THE DATAPAQ EXPRESS READER Multirack Scanner Installation ZTS A4 1 Install the driver The driver for this is on the installation disk in the folder Multiple Rack Scanner Driver alternatively to ensure the most current version is being used download it from http ziath com index php downloads software manuals Before pluggin
23. 995 A1 2001 EN60950 Designed manufactured and distributed by Ziath Ltd Nak p Neil Benn Director DataPaq User Guide Page 75 0f 86 ROHS C Ziath Ltd The Studio High Green Great Shelford Cambridge CB22 5EG Registered as a limited company in England amp Wales Company number 05598930 Ziath Ltd certify with sole responsibility that the following equipment Description High Speed 2D Barcode Scanner Model Number ZTS A6 adheres to the requirements of Restriction of Hazardous Substances Directive European Directive 2002 95 EC RoHS and are considered to be verified as RoHS compliant Levels are beneath the stated maximums detailed below ROHS restricted Substance Cadmium and its compounds Mercury and its compounds Hexavalent Chromium and its compounds Lead and its compounds Polybrominated Biphenyls PBB Polybrominated diphenyl ethers PBDE Designed manufactured and distributed by Ziath Ltd Nuch Pr Neil Benn Director Page 76 0f86 DataPaq User Guide Ziath Ltd The Studio High Green Great Shelford Cambridge CB22 5EG Registered as a limited company in England amp Wales Company number 05598930 Ziath Ltd certify with sole responsibility that the following equipment Description Deep Focus 2D Barcode Scanner Model Number ZTS AV6 adheres to the requirements of 89 336 EEC for EMC and 73 23 EEC for low voltage safety based upon adherence to the following stand
24. Col tubeBarcode lt list racks as rack gt lt ttlist rack containers as container gt S scandate datetime S rack barcode S container textRow S container col 1 S container barcode GN OOO A description line by line is shown below Line 1 These are the headers this text will be written out once for every file that is exported Whatever is added here will be exported at the top of any exported text file in addition extra lines can be added into this section if so required Line 2 This will perform the following lines for each of the scanned racks one by one the large scanner can scan three racks at the same time so in this case it will export all three racks scanned Note that the as rack section tells the outputter to use the name rack to refer to the rack currently being outputted Line 3 This processes the following lines for each tube in the specified rack Note that the as container section tells the outputter to use the name container to refer to the current rack being outputted Page 68 of 86 DataPaq User Guide Line 4 For each tube this will export the following information Vi scandate datetime scandate this will export the date in the default configuration as defined on the PC DataPaq is running on Entering a pattern to specify the date and time format can change the format of this for example entering scandate string yyyy MM dd HH mm ss
25. a INNI wall 4 Barcode Scanner Database Export Fe format Text File format Default File Pattern Example file name Default export directory C Users Kay Desktop Browse File Details _ Append file data to existing file Does not apply to XML exports Automatic Export Export On Read Do not automatically export a file C Automatically Export File if no read errors occur C Automatically Export File even if read errors occur Export Type Excel Select this to export a single file for each scanned rack Open results file on save Open File After Saving Apply all changes and close window Cancel all changes and dose window Figure 33 File Export Configuration Dialogue On this dialogue there are three tabbed sections File Details The first tab entitled File Details has a few options for the file details e Default File Pattern this is the default file name which will appear in the Save as file chooser or will be saved automatically if automatic export is selected see below Note the substitution for the special elements as follows o lt date gt places the date in the file name o lt time gt places the time in the file name DataPaq User Guide Page 29 of 86 o lt n gt places the rack number or ALL if all racks are exported in the filename o lt barcode gt places the barcode in the filename if all racks are exported the barcodes are separated with an under
26. ad every well however if the rack has not been placed on the scanner correctly DataPaq may take some time to read the rack the precise time is detailed according to the parameters set in the Abort Policy If this is clearly a human user mistake the read can be cancelled clicking the Cance button shown in the decoding ticker as shown below DataPaq User Guide Page 59 of 86 th DataPag File Configure Help Deep Focus 96 vial SBS rack 54 of 96 Figure 71 Cancel Dialogue After scanning the results of the codes are shown if a tube is correctly read it will be outlined green if missing it will be boxed grey and if present but damaged it will be boxed red mh Results of scan and decode 0 qs Save as Excel Save as text A Save as XML Save Image Scan Complete Scan Time Question Answers Production date 28 07 2014 Expiry date 26 07 2015 Images Barcode Lists Barcode Tables ZIATH DOOS Location C10 Barcode 0011131625 gt Figure 72 Result Window Page 60 of 86 DataPaq User Guide Should Scan Time Questions be enabled the results of the Scan Time Questions will also be displayed as shown below Images Barcode Lists Barcode Tables ZIATH D009 A01 A02 2030 204 20504 soci 407 9 soci Aos Atom Ati A12 801 20288 50308 80404 605 605 B07 sosi sosi s10 3110 812 c01 cO2M cosi coa
27. aq User Guide Figure 69 Sound Configuration in Other Settings cccccccccccsssecccesececeeeeceeeeesecesseeceeeeeneeeten 56 Figure 70 Main Operation Dialogue ccccccsccccsssececeesecceceseceeeesececeeececeegeceeseuseeeseunecesseneceesees 59 Figure 71 Scan Time Questions Dialogue rrrrrnnnnnnrrrnnnnnnnnrrnnnnnnnrrnnnnnnnnernnnnnnnnrrnnnnnnnesrnnnnnnsssennnnnnee 59 Figure 72 GielDAF aasacd essa sinncnccaisesataete namaste gene cniee res sacamonce eemananadeanscaeiamnrsestanonasemsnnenacecoraaeeioes 60 Figure 73 Result WV OW Loren 60 Figure 74 Results window showing Scan Time Questions cccccccccssseececceeeseeceeseeeeeeeessaassees 61 Figure 75 Orientation Rack Dialogue Menu cccccccsseccccesscccceesececeusececeeueceeeeeseeeesuaeceseuneceeeees 62 Figure 76 Adding Orientation Barcodes ccccccesecccssecccsecceescecaececeeceeeneceeescessencessecensneeeneneets 62 Figure 77 Choosing a different location for the orientation barcode ccccccccccesseeeeeeeeeeeees 63 Figure 78 Orientation Barcode Error MeSSage cccssccccssccccsscecsnececeneceeeneceeenceseescessecessneeeeeaeees 64 Figure 79 The red error mark shows where DataPaq was trying to read the code 64 Figure 80 Example Excel Output rrrrnronrrrnnnnnrrnnnnnnrnnnnnnrrnnnnnrrnnnnnernnnnnnrnnnnnnennnnnnennnnnnsvnnnnnesennnnsssennn 65 Feen 6
28. ards EN 55022 2006 A1 2007 EN 61000 3 2 2006 EN 61000 3 3 2008 EN55024 1998 A1 2001 A2 2003 IEC 61000 4 2 2008 IEC 61000 4 3 2008 IEC 61000 4 4 2004 IEC 61000 4 6 2008 IEC 61000 4 8 2009 IEC 61000 4 11 2004 Designed manufactured and distributed by Ziath Ltd Nad Neil Benn Director DataPaq User Guide Page 77 of 86 ROHS C Ziath Ltd The Studio High Green Great Shelford Cambridge CB22 5EG Registered as a limited company in England amp Wales Company number 05598930 Ziath Ltd certify with sole responsibility that the following equipment Description Deep Focus 2D Barcode Scanner Model Number ZTS AV6 adheres to the requirements of Restriction of Hazardous Substances Directive European Directive 2002 95 EC RoHS and are considered to be verified as RoHS compliant Levels are beneath the stated maximums detailed below ROHS restricted Substance Cadmium and its compounds Mercury and its compounds Hexavalent Chromium and its compounds Lead and its compounds Polybrominated Biphenyls PBB Polybrominated diphenyl ethers PBDE 1000ppm 0 1 weight Designed manufactured and distributed by Ziath Ltd Nuch p Neil Benn Director Page 78 of 86 DataPaq User Guide Ziath Ltd The Studio High Green Great Shelford Cambridge CB22 5EG Registered as a limited company in England amp Wales Ziath Ltd certify with sole responsibility that the following equipment
29. atting column details the format which the scan date and time will be shown Below is the description of the patterns which can be defined The third column Cell Formatting details how the data will be shown in the excel sheet The exact details of the formatting for each Data Type are as below Letter Date or Time Component Presentation Examples G Text y Year Month Number Number Number Number F Number E Text Text Number O Number Number 0 Number Number Number Number General time zone RFC 822 time zone 0800 Some examples are detailed below vyyy MM dd G at HH mm ss z 2001 07 04 AD at 12 08 56 PDT Page 32 of 86 DataPaq User Guide EEE MMM d yy Wed Jul 4 01 12 08 PM yyMMddHHmmssZ 010704120856 0700 vyyy MM dd T HH mmiss SSSZ 2001 07 04T1T12 08 56 235 0700 Date presents the scan date all formatting characters which refer to the time are not allowed in the formatting string Time presents the scan date all formatting characters which refer to the date are not allowed in the formatting string o No Error Should there be a problem with the cell formatting string while editing this will explain the problem o Write Header If this is selected the column header will be written into the Excel sheet which is the name of the data type being written o Add Column This will add an extra column to the export template for the specified data o Remove Column This will remov
30. camera the higher the exposure the brighter the image This might need to be altered if using a custom rack or an unusual situation such as very bright light Page 20 of 86 DataPaq User Guide Calibration On first use the High Speed scanners need to be calibrated to detect the rack and the locations of the tubes in the rack This only needs to be done once for that rack group NB only the High Speed scanners need to be calibrated though the deep focus can be forced to calibrate and both scanners need to be calibrated for 384 well racks Automatic Calibration 1 The first time a rack is scanned DataPaq will calibrate the rack group To do this either click the rack image the first time after the rack has been added or right click the rack and select Calibrate rack tH DataPaq File Configure Help Select Scanner 2 Deep Focus Export rack Add orientation code Figure 19 Calibrate Rack Group 2 As prompted place a full rack on the scanner and click Start Calibrating DataPaq User Guide Page 21 of 86 DataPaq Calibration Wizard Calibration Instructions You are about to calibrate a 96 vial SBS rack You only need setup and calibrate any given rack template ONCE Even if you intend to scan plates from different manufacturers Please place a full rack on the scanner nest and then press the Start Calibrating button Figure 20 Calibration Instructions The scanner w
31. cccesseccceesececeeeeeceeeuseceseueceeseneeeetas 39 Figure 47 Select Option Menu csscscssssesscsosssscncossvectcussscueussscnsossecsenssscneussscseoussestenssseneussrenee 40 Figure 48 Configuration Front Page cccccccsssccccessececeesecccceeececeuseceeeeneceeseuseceseesecessegeceesaneeeetas 41 Figure 49 Database Configuration Front Page ccccccscccccsssecccesececeesececeeeseceeeuseceseeeceeseeneeetas 42 Figure 50 Database Connection Configuration cccccccccsssecccsesececeesececeenecceseeseceesueceseuneceesees 42 Figure 51 Successful Connection Dialogue 1 ccccccccccssseecceceeesecceeeeeeecceeseeesecceeseueneeeeeseeenes 44 Figure 52 Successful Connection Dialogue 2 cccccccccssseeccceeeeseccceeeeeeeeceeeeeeeeeceeseueseceeeeeeenes 44 Figure 53 Option Menu Selection vciviesinceccssiccsscscaccescrroossvvacdeieasesdesnssiedorascnsdecerbedsechisesdevansavanausueentes 45 Figure 54 Configuration Front Page ccccccccsscccccsseccceeseccceeseceesesececsueceeeeeeceeseenecessuecessegeceetees 45 Figure 55 Database Connection Script Editor rrrrnrnnrrrnnnnnrrnnnnnnrnnnnnnrnnnnnnrrnnnnnernrnnnnrnnrnnerrnrnneseennn 46 Figure 56 Script Preview cccccccsscccsscccsecccseccenecceuccesucceeceeuseseueeseucesaecesneessueeseueeseeeseaeeseneesanseneess 47 Figure 57 Select options MENU ccccccccssseccccesscceceesececeeecec
32. ceuecceceusececeunecesseesceessuecessegeceesaneeeetas 49 Figure 58 Configure dialogue L r 49 Figure 59 Time Out Settings cccccescccsscccsecceseccesecceuccseuceseucceeecceeeseucessucesaucesaeesseeeseusensusesaeeeaaes 50 Figure 60 Select Options Menu rrrrnrnnnnnnrnnnnnnrnnnnnnnrnnnnnerennnnnnnnnnnnsnnnnnnnsnnnnnnsnnnnnnesnnnnnesnnnnnnsnennunesene 51 Figure 61 Configure Dialogue rrrrnnrrrnnnnnnrnnnnnnrnnnnnnrrnnnnnernnrnnnnrnnnnnernnnnnnnnnnnnsvnnnunennnnnesnnnnunsnnnnnnesene 51 Figure 62 Scan Time Questions Dialogue rrrrrrnnnnnnrnnnnnnrrnnnnnnrnnnnnernnnnnnrnnnnnnsvnnnnnernnnnneennnnnnsnnnnnneeene 52 Figure 63 Accessing Options from the Configure menu rrrrrrrnnrrrrrrnnrrrnrnnnrrrrnnnerrnrnnerrnrnnnernnnnneeene 53 Figure 64 Configure Dialogue rrrrnnrrnnnnnnrrnnnnnnrnnnnnnrnnnnnnrrnnnnnnrnnnnnernnnnnnrnnnnnnsennnnnsnnnnnnesennnnesennnnessenen 53 Figure 65 Activator Options Configuration rrrrrnnnrrrnnnnrrrnnnnnrrnrnnnnrnnnnnnrrnrnnnnrnnnnnernnnnnnennrnuneennnnneeene 54 Figure 66 Configure Me nu cccccccssscccccsseccccensccccsusececseseceeseeeececsuecessenececseeeeeetsuecessugeceeseneeeetes 54 Figure 67 Front page of Options MeNu cccccccsssecccesececcesscceceesececeeeceeseeseeeeeuecesseneceesaeneeetas 55 Figure 68 Other Settings Configuration cece ccesecccesseccecesseceeeeececeueceesegeceeseeseeessuecessenecessees 55 Page 80f70 DataP
33. ck col rack row barcode values WELL UUID RACK_UUID COL EROWE BARCODEG Preview and Test Script Apply all changes and close window Cancel all changes and dose window Figure 54 Database Connection Script Editor The window above shows a sample script A script defines the SQL statements which will be executed after a rack has been scanned Variables can be used to represent a value which is enclosed between two at symbols The available variables are shown below RACK_UUID this is a unique id which is generated for every rack that is scanned WELL_UUID this is a unique id which is generated for every tube that is scanned LINEAR this is the barcode of the scanned rack ORIENTATION this is the 2D barcode on the underside of the rack BARCODE this is the barcode of the scanned tube COL this is the column of the scanned tube ROW this is the row of the scanned tube NUM_ROWS the number of rows in the rack NUM_COLS the number of columns in the rack For each well a query with the available variables will be executed however if a query would be exactly repeated it is not executed twice An example script follows Page 46 of 86 DataPaq User Guide Execution insert into rack id barcode values RACK_UUID LINEAR insert into tube id rack_id rack_col rack_row barcode values WELL_UUID RACK_UUID COL ROW BARCODE This would
34. ck on the new cell in Data Type and choose the type from the drop down box The first column Data Type details the information that is to be exported Rack Barcode barcode of the rack which has been read Tube Barcode barcode of the tube which has been read Orientation Barcode barcode on the underside of the rack Tube Position location of the tube note that this has a dependent formatting string Date date of the scan note that this has a dependent formatting string The second column Header Text details the header text which is displayed in the Excel file Rack Barcode The cell formatting column is not used The rack barcode is simply written into the Excel sheet DataPaq User Guide Page 31 of 86 Tube Barcode The cell formatting column is not used The tube barcode is simply written into the Excel sheet this is classified as a text column so that barcodes with leading zeros are not truncated Orientation The cell formatting column is not used The tube barcode is simply written into the Barcode Excel sheet this is classified as a text column so that barcodes with leading zeros are not truncated Excel sheet Excel sheet Text Excel sheet Tube Position The cell formatting column defines how many digits will be used to denote the column Input an to write the column as A1 ann to write the column as A01 annn to write the column as A001 and so on Datetime The cell form
35. ded plate1 As an output in the Excel text and headless outputs to signify that no barcode plate2 was provided If more than one rack is scanned and no barcode is entered the plate3 1 will increment platen As an output in the Excel text and headless mode to simulate demo mode when a 1D Rack Scanner option is installed However these words can be changed A configuration file called keywords xml is located in the DataPaq installation directory on English Windows 7 it is at C ProgramData Ziath DataPaq keywords xml This contains the above words and they can be changed to other values as required DataPaq User Guide Page 67 of 86 Appendix B Customising Export Text Format While there is a suitable default for exporting it is recognised that an individual organisation may wish to change the export format for a variety of reasons including for example interaction with existing systems or for local language compatibility For this reason the text file format is totally flexible The textual export is created using a technology called a templating language specifically Freemarker with this technology it is possible to change the headers the exported data the format of the columns and rows and even the format of the date US EU date formats are one example As an illustrative example the current default text output format is detailed below Line Number Line Text Date RackBarcode Row
36. e Import Rack Configuration If there is a pre configured import file for a rack group select Configure gt Import Rack from the menu This also configures the scanner Te File Configure Help Add Scanner Remove Scanner Configure Scanner Add Rack Import Rack Figure 10 Configuration Menu Browse to the rack group XML file Import Rack Group v T pr gt ThisPC Documents Ziath gt v Search Ziath p Organise v New folder v fil ee 5 Name Date modified Type a MN Desktop di Adverts 31 10 2013 08 53 File folder dg Downloads di AVA6 V600 20130816 27 11 2013 11 37 File folder 3 Dropbox Brochures 28 07 2014 14 16 File folder E Recent places di Business Cards 29 05 2014 11 35 File folder amp SkyDrive di CAD 31 10 2013 08 54 File folder Competitors 08 01 2014 14 39 File folder di Compliance Documentation 08 01 2014 14 39 File folder 4 fm OneDrive pm Cryovials 06 11 2013 14 21 File folder d Documents d DataPaq 31 10 2013 13 04 File folder Pictures Distributors 31 10 2013 08 54 File folder di DMSO 14 01 2014 14 39 File folder 4 4 Homegroup Emailers 13 06 2014 05 55 File folder v FA Kav Pemberton Y lt gt File name v XML document v Cancel Figure 11 Browse Menu Page 16 of 86 DataPaq User Guide Click Open and the rack group is added The rack and the scanner are pre calibrated x DataPaq Fil
37. e 0 ANE RICE 6 B 0 EEE EE Oe Oe 17 CI EE E 21 CD ONOI ETO EE ER 25 Configuration Of Multirack Scanner ccccccccsseccceecccesecccsceceecsceeceeeueceeeeceseuacsseueceeeueseeeneeeagars 25 BOLD BET TEXt Configuratio harr 29 Linear 1D Barcode Scanner Configuration ccccccsescccccccssseccccceesecccceeeeseccceeeeeeccessueeeeceeeeeeeeeeeeeaees 36 DataPaq User Guide Page 3 of 70 Manual Linear Scanner as rnasnnnnnrnnnnnnnnssnnnvrnnnnnnnssrnnnvnnnnnnnsssnnnnsnnnnnnnssennnsnnnnnnsnsssnnnsrnnnnnnsssnnensnnnn 37 External Linear SCcanner rnarrnnnrrnnnnnnnssrnnnnrnnnnnnssssnnnsnnnnnnnsssnnnssnnnnnnnssnnnnsrnnnnnnnsssnnnsnnnnnnnsssnnensnnnn 37 internal Mirror SN 38 ETE Barcode SCANNET dn 39 Sem Balers NE 40 Database Export Configuration rrrarnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnennnnnnnnnnnnnnnnnnnnnennrnnnnnnnnnnnnnnnnnnnnnnnnnsnennne 40 ENN E One eee re Cae nee eee cern ar ere 40 Ble or se 0 FRE nan men Re ornare eS ee Oe re ee ere 45 KEN ascechecsce enepides ooeesaueiesen bauecatensteenepeaewesnanen esas boeeieeeceees 47 Me 49 Scan Time Questions Configuration arrrnrunnnnnunnnnnnnrnnnnnnnnnnennvnnnnnnnnnnnnnnnnnnnnnnnnnnnnvnnnnnnnnennnnnnnnnnsnnnnnenene 51 TN 53 TN NM 54 Sound CUS EEE PR 56 INNEN 56 DL EE EE EE NE 58 DP TN 59 Configuring Decoding of Racks with Orientation Barcodes rrrnrunnnnnunnnnnnnnnnnnnnnnnnnnnnnnennnnnvnnnnnnnnnnenenn 62 Error in Reading Orientation Barcode
38. e Configure Help Figure 12 Example of Rack group image for an imported rack Add New Rack Group A rack group sets the template and configuration of the particular rack types to be scanned E g Standard SBS with 96 tube positions SBS layout with 48x2ml tube positions etc 1 Toadda rack group select Configure gt Add Rack from the menu ik File Configure Help Add Scanner Remove Scanner Configure Scanner Add Rack Import Rack Options Figure 13 Configuration menu DataPaq User Guide Page 17 of 86 2 From the list select the appropriate rack group the rack orientation is automatically set for the type of scanner chosen in New Scanner Configuration above In addition only racks available for that scanner type are shown Here we have selected the 96 vial SBS rack as shown in the second row down and on the left of the following figure Rack Types Choose a rack type 384 vial SBS rack FCR 384 vial SBS rack Thermo HA HH HTH 3223 Errr 48 vial SBS rack Nunc Star 24 vial SBS rack Thermo 24 vial SBS rack Micronic 12 vial SBS rack Figure 14 Select Rack Type User Interface 2 A prompt appears to Configure the scan Refer to Figure 15 a Enter a name for the rack group b The unique ID is used for remote interaction If this feature is being used select an ID to use for the remote interface ensure the system integrator and or automation scienti
39. e the selected row from the export template o Up Arrow This will move the selected row up the table o Down Arrow This will the selected row down the table Text File Format The third tab is labelled Text File format using this tab the export can be configured The format is written in a system called a mark up language specifically Freemarker this is explained in greater detail in Appendix B The export can be prepared for both scan results and scan time questions The fields shown below can be typed in DataPaq User Guide Page 33 of 86 wE Configure DataPaq Mi S I Tur hace Fynor sttinas File Details Excel File format Text File format Text Export Template Data Export Template lt if scanTimeQuestionsEnabled gt Scan Time Questions lt list scanTimeQuestions as question gt question shortName question answer Date RackBarcode Row Col tubeBarcode OrientationBarcode lt list racks as rack gt lt list rack containers as container gt scandate datetime rack barcode container textRow container col 1 contain lt list gt lt list gt Apply all changes and dose window Cancel all changes and dose window Figure 35 Text Export Template Once a field has been edited the result can be tested by clicking the Test Data Export button which will display the results including any changes made as shown below E Export Success
40. ective European Directive 2002 95 EC RoHS and are considered to be verified as RoHS compliant Levels are beneath the stated maximums detailed below ROHS restricted Substance Cadmium and its compounds Mercury and its compounds Hexavalent Chromium and its compounds Lead and its compounds Polybrominated Biphenyls PBB Polybrominated diphenyl ethers PBDE Designed manufactured and distributed by Ziath Ltd Nuch pi Neil Benn Director Page 84 0f 86 DataPaq User Guide Ziath Ltd The Studio High Green Great Shelford Cambridge CB22 5EG Registered as a limited company in England amp Wales Company number 05598930 Ziath Ltd certify with sole responsibility that the following equipment Description Single Tube 2D Barcode Scanner Model Number ZTS S2 adheres to the requirements of 2004 108 EC for EMC based upon adherence to the following standards EN 55022 2006 A1 2007 Class B EN 55024 1998 A1 2001 A2 2003 IEC 61000 4 2 2008 IEC 61000 4 3 2008 IEC 61000 4 4 2004 IEC 61000 4 5 2005 IEC 61000 4 6 2008 IEC 61000 4 8 2009 IEC 61000 4 11 2004 Designed manufactured and distributed by Ziath Ltd Nak p Neil Benn Director DataPaq User Guide Page 85 of 86 ROHS C Ziath Ltd The Studio High Green Great Shelford Cambridge CB22 5EG Registered as a limited company in England amp Wales Company number 05598930 Ziath Ltd certify with sole responsibility that the following
41. experience problems with this step contact support ziath com Page 140f86 DataPaq User Guide Trial Version To use the software as a Trial Version click Create Trial Licence on the Licence Registration Dialogue This will allow DataPaq to be used without requiring a licence Note that DataPaq will only deliver a partial read whilst in Trial Version mode 10 of the read barcodes will be obscured with the text TRIAL Configuration Add Scanner 1 Configure gt Add Scanner from the menu te File Configure Help Add Scanner Remove Scanner Configure Scanner Add Rack Import Rack Options Figure 7 Add Scanner Configuration DataPaq will add a new scanner to the configurations DataPag File Configure Help lt new scanner gt Figure 8 Main User Interface New Scanner DataPaq User Guide Page 15 of 86 2 The scanner will need to be configured go to Configure gt Configure Scanner DataPaq shows a list of the available imaging devices on your system Select from either the High Speed Rack Scanner Deep Focus Rack Scanner Express Scanner or Multirack Scanner Note that the High Speed Scanner Multirack Scanner or Express Scanner are not displayed unless they are connected to the computer and powered up Configure Scanner Name Twain connection Deep Focus Rack Scanner AVA6 TWAIN Swap Al position Cancel OK Figure 9 Add New Scanner Interfac
42. g the scanner in or installing DataPaq install the driver from either of these two sources 2 Release the transport lock on the scanner top of the scanner in the top right position 3 Connect the scanner to the computer and switch on using the button at the back by the power and USB ports DataPaq User Guide Page 10 of 86 4 Install DataPaq High Speed Scanner Installation ZTS A6 1 2 3 Install the driver the driver for this is on the installation disk in the folder Single Rack Standard Focus Driver alternatively to ensure the most current version is being used download it from http www ziath com index php downloads software manuals If downloading from the website extract the zip file Before plugging the scanner in or installing DataPaq install the driver from either of these two sources Double click setup exe to initiate the setup program and follow the on screen instructions Release the transport lock at the back of the scanner next to the power and USB ports Connect the scanner to the computer and install DataPaq Deep Focus Scanner Installation ZTS AV6 and ZTS AV62 1 2 3 Install the driver The driver for this will be on the installation disk in the folder Single Rack Deep Focus Driver Alternatively to ensure the most current version is being used download it from http www ziath com index php downloads software manuals If downloading from the website extract the zip
43. generate one SQL statement 96 identical copies of the same statement mean that the statement would only be executed once to insert the rack and assuming a 96 tube rack 96 SQL statements to insert the well data For testing purposes Preview and Test Script button on the script interface can be clicked This will display the exact SQL statements which will be executed as follows Script Preview insert into tube id rack id rack col rack row barcode values Zelat4cl 9653 ibce b833 J cBatBf9se77 GRACE UUID 10 7 TESTWELLBARCODE 7 10 insert into tube id rack id rack col rack row barcode values ab 3eaS62 cd81 4a8a51 a756 b dcfe7bfc75 RACK UUID 11 7 TESTWELLBARCODE 7 11 Figure 55 Script Preview If the Execute button at the top left of the window is clicked the SQL will be executed against the host database The data which is loaded in will have the barcodes beginning with TEST so they can be identified and purged from the database after the test For operation the system can be configured to automatically execute when a rack is scanned as long as no read failures occur by clicking the Automatically Export checkbox on the script entry dialogue The available options are below circumstances marked as empty Do not automatically export to the Database the export will not happen under any Automatically export if no read errors occur only export if
44. hen a scan in completed Sound on scan failure Sound on scan success Auto repeat settings Automatically carry out a repeat scan if there are failures Number of times to repeat Optical Notch Detection Settings Turn optical notch detection on Select COM port Cancel all changes and dose window Figure 68 Sound Configuration in Other Settings The sounds will play according to the tick boxes Optical Notch Detection Express scanners have an optional feature known as Optical Notch Detection This allows the system to inspect a small cut out present on the side of racks from Micronic Ziath and Thermo If this is activated and the rack is placed on the wrong way round DataPaq will warn you The driver is the same driver as the controller driver the Optical Notch Detection installs a COM port which needs to be configured Select the COM port and click the Test button this will then connect to the scanner and report the results Page 56 of 86 DataPaq User Guide TN UIL Tar Scanner Database Expor me out settings eee Other Settings Sound settings Play sounds when a scan in completed Sound on scan failure Sound on scan success Auto repeat settings Automatically carry out repeat scan if there are failures Number of times to repeat repeat 2 times Optical Notch Detection Settings Turn optical notch detection on Select COM port Apply all changes and close window Cancel all changes and clo
45. iath DataPaq Scanner the product referenced in this manual For purposes of this warranty the product refers to both hardware and software and other peripheral items as supplied by Ziath but specifically excludes any consumable items Ziath provides warranty on the product on the following terms 1 The terms of this warranty apply to the product as purchased and are for the benefit of the original purchaser only Ziath makes no express or implied warranty on the product in the event the product is sold on or transferred to any third party 2 Ziath will repair or replace defective parts and or equipment within a reasonable time period up to one year and within the service levels applicable to original or extended warranties 3 As part of the warranty offered by Ziath part of or the entire product may be replaced In order to take advantage of this service you will be required to confirm that you have not transferred any rights in the product to a third party You also agree that Ziath may remove the product from your location in order to effect the repair as necessary which determination of necessary removal will be made at Ziath s sole discretion The repair or replacement of the product will not extend the original warranty period selected at the time of purchase 4 Warranty service will be void in the event unauthorized modifications have been made to the product This warranty does not cover faults or damage caused by
46. ill scan the rack for the first time th DataPaq Calibration Wizard Performing first scan Image 1 Transfering Mode Native Memory Scanning Page es Elapsed Time 00 00 07 Received Size 0 Bytes Total Size 0 Bytes Cancel Figure 21 Scan progress 3 The scanner will scan once more to locate the rack and tubes If calibration is successful click Finish Page 22 0f 86 DataPaq User Guide DataPaq Calibration Wizard Rack successfully calibrated 4 Ge av alae NOE DON ye pi i gt y p FE gt amp gt N ra 3332 OG Figure 22 Successful Calibration 4 On rare occasions a rack may not be calibrated correctly due to environmental lighting missing tubes or damage to the rack The scanner will need to be manually calibrated DataPaq User Guide Page 23 of 86 Manual Calibration 1 If the automated calibration has not detected the rack click Yes Manually Calibrate SPT 2 The automatic calibration failed Would you like to manually calibrate _ Cancel Figure 23 Manual Calibration Dialogue 2 Aprompt will appear to start Calibration again Click Start Calibrating to begin 3 The scanner will scan to locate the rack The image of the rack will be shown with a white overlay to show where the software thinks the rack is placed DataPaq Calibratio
47. ing squares Figure 76 Choosing a different location for the orientation barcode All the options will be flashing in blue as above Click whichever location is right for your rack and click on Finish Even after you have chosen a different location you are still able to change your mind and go through the process of re choosing Now that the orientation barcode has been configured the scanner can be used as normal see DataPaq Operation for instructions The orientation barcode will be decoded and exported into the file DataPaq User Guide Page 63 of 86 Error in Reading Orientation Barcode If DataPaq cannot read the orientation barcode once the scan has completed this window will appear Error x The orientation barcode was not read please check that you have put the plate on the correct way around Figure 77 Orientation Barcode Error Message The scan result will show a red fail area where DataPaq was trying to read the barcode E Results of scan and decode 0 N amp Save as Excel Save as text i Save as XML Save Image Scan Complete Scan Time Question Answers Production date 02 05 18 Expiry date 03 05 19 Images Barcode Lists Barcode Tables 123456 01 02 03 04 05 06 07 08 09 10 11 12 Location Barcode Figure 78 The red error mark shows where DataPaq was trying to read the code If this happens check the rack being used and that it is n
48. l cosi cosi cori cosi cos ciom ciii c12 004 0020 00308 004 fl Dosi pos fl 007 posi pos il 01088 011 012 019 E02 Eosi E04 cos Eosi 07 Eosi Eos E10 E11 12 FO F02 Fooi roa Fosi Fos i Fo iE Fosil ros il Fio rs F12 H01 Hoz Hos ii Hos il Hosil kos il Ho7ii Hosil kos il H10 H110 H12 Figure 73 Results window showing Scan Time Questions Location DOS Barcode 0011131682 DataPaq User Guide Page 61 of 86 Configuring Decoding of Racks with Orientation Barcodes The orientation barcode will need to be configured prior to scanning a rack Right click the image of rack rather than left clicking This menu will appear Move Up Move Down Remove rack Calibrate rack Edit rack Figure 74 Orientation Rack Dialogue Menu Click on Add orientation code and the scan will start A new window will open showing where DataPaq is looking for the orientation code Add orientation barcodes Ea An orientation barcode is selected for this rack If you wish to change the existing selection click on the image of the existing barcode to deselect it Figure 75 Adding Orientation Barcodes If the rack you are using has an orientation in a different location click on the image of the selected location in green and a new window will appear Page 62 0f 86 DataPaq User Guide W Add orientation barcodes No orientation barcode is selected Please select an orientation barcode from the flash
49. mpany in England amp Wales Company number 05598930 Ziath Ltd certify with sole responsibility that the following equipment Description Single Linear Barcode Scanner Model Number ZTS 1DR2 adheres to the requirements of Restriction of Hazardous Substances Directive European Directive 2002 95 EC RoHS and are considered to be verified as RoHS compliant Levels are beneath the stated maximums detailed below ROHS restricted Substance Cadmium and its compounds Mercury and its compounds Hexavalent Chromium and its compounds Lead and its compounds Polybrominated Biphenyls PBB Polybrominated diphenyl ethers PBDE Designed manufactured and distributed by Ziath Ltd Nah Neil Benn Director Page 740f86 DataPaq User Guide Ziath Ltd The Studio High Green Great Shelford Cambridge CB22 5EG Registered as a limited company in England amp Wales Company number 05598930 Ziath Ltd certify with sole responsibility that the following equipment Description High Speed 2D Barcode Scanner Model Number ZTS A6 adheres to the requirements of 89 336 EEC for EMC and 73 23 EEC for low voltage safety based upon adherence to the following standards EN 55022 1998 Class B EN 55024 1998 EN 61000 4 2 1995 A1 1998 A2 2001 EN 61000 4 3 2002 A1 2002 IEC 61000 4 4 1995 A1 2001 A2 2001 IEC 61000 4 5 1995 A1 2001 IEC 61000 4 6 1996 A1 2001 IEC 61000 4 11 1994 A1 2000 IEC 61000 3 2 2000 IEC 61000 3 3 1
50. n Wizard Performing first scan Figure 24 Image of the Rack with a White Overlay 4 Move the cursor over the white overlay and drag so it is overlaid over the rack Page 24 0f 86 DataPaq User Guide th DataPaq Calibration Wizard Performing first scan Figure 25 Overlay corrected 5 Then click Next and the scanner will scan the rack again It will again show the rack image and the white overlay reposition the white overlay This process is teaching the software where the tube positions are and creating the correct offset Do not be alarmed when on the second scan the white overlay is not positioned directly over the tubes this is deliberate 6 Click Finish The manual calibration is now complete Calibration of Express The express unit is delivered pre calibrated so there is no need to perform the calibration step You only need to create the plate group and the Express reader is ready to be used Configuration of Multirack Scanner Due to the many varied ways in which a Multirack scanner can be configured the setup for this is different than for the single rack scanners The method to add the scanner is the same as for the single rack scanners Configure gt Add Scanner Once this is done the screen will now showing the following E DataPaq File Configure Help lt new scanner gt Figure 26 New scanner has been added DataPaq User Guide Page 25 of 86 VA
51. ot back to front on the scanner Page 64 0f 86 DataPaq User Guide Export Formats There are three export formats that can be selected Excel Text and XML Excel The Excel file that is generated is a true Excel file rather than a csv file The format of this is fixed so as to ensure reproducibility between DataPaq versions The header is coloured in red and the data is in rows beneath as shown here Should Scan Time Questions be enabled the questions and the shortname will be shown as an extra B C D E F EEE SEERE 2 28 7 2014 19 02 28 7 2014 19 02 28 7 2014 19 02 28 7 2014 19 02 28 7 2014 19 02 28 7 2014 19 02 28 7 2014 19 02 28 7 2014 19 02 28 7 2014 19 02 28 7 2014 19 02 28 7 2014 19 02 28 7 2014 19 02 28 7 2014 19 02 28 7 2014 19 02 28 7 2014 19 02 28 7 2014 19 02 28 7 2014 19 02 28 7 2014 19 02 column in the Excel file ZIATH D009 ZIATH D009 ZIATH D009 ZIATH D009 ZIATH D009 ZIATH D009 ZIATH D009 ZIATH D009 ZIATH D009 ZIATH D009 ZIATH D009 ZIATH D009 ZIATH D009 ZIATH D009 ZIATH D009 ZIATH D009 ZIATH D009 ZIATH D009 Figure 79 Example Excel Output none none none none none none none none none none none none none none none none none none DOUDODOUDOrrrrrrrrrrrr r 10011131613 270011131644 30011131620 470011131678 50011131650 60011131631 70011131641 80011131619 90011131680 100011131675 110011131606 12 EMPTY 170011131666 2700
52. ow Figure 64 Activator Options Configuration The available options are Ziath Scanner Active this turns on the Activator e Plate Group to Read the scan to execute when the rack is detected e Read Duplicate Barcodes if the same barcode on a rack will be read twice in a row e Delay between barcodes the gap in between reads for a rack to be automatically scanned by the Activator when reading the same rack barcode twice Auto Repeat Settings Due to external factors a tube may sometimes not decode correctly but can be decoded with another scan Therefore if DataPaq scans a tube which is not detected it can be configured to rescan the rack a number of times to attempt to decode the tube again This can be configured in the options menu Go to Configure gt Options menu as shown below File Help Add Scanner Remove Scanner Configure Scanner Add Rack Import Rack Options Figure 65 Configure Menu Page 54 0f 86 DataPaq User Guide The following window will appear NAL Configure DataPaq Barcode Scanner File Details Excel File format Text File format File Name Default File Pattern Example file name Default export directory C Users Kay Desktop File Details Append file data to existing file Does not apply to XML exports Automatic Export Export On Read Do not automatically export a file C Automatically Export File if no read errors occur
53. p MG gt dm File Export Barcode Scanner Database Export Time out settings Scan Time Questions Activators Other Settings oP Fail fast settings Activate fail fast 0 5 gt Percentage of failed wells for fail fast Time out settings Activate time out Number of seconds before abort 30 seconds Percentage effort setting Percentage effort to decode 100 The decode will be aborted if the proportion of failed decodes becomes too high if the decode takes more that 30 seconds the entire rack decode will be aborted 100 effort will be put into decoding the rack Apply all changes and dose window Cancel all changes and dose window Figure 58 Time Out Settings The settings have three different options 1 Fail fast The percentage of tubes that have failed to scan before the scanner stops 2 Time out settings The number of seconds the scanner will wait without having completed the scan before aborting 3 Percentage effort setting How much effort the scanner will put into decoding the rack before it aborts A time out in milliseconds for a decode is not practical for the time spent on each tube The time taken to decode could be affected by such things as the computer processor speed or any other processes that the computer is performing at the same time Page 50 0f 86 DataPaq User Guide Scan Time Questions Configuration The Scan Time Questions configuration allows the system to prompt the user
54. pe for the Multirack Scanner 5 Click Next 6 Configure the racks a Enter a name for the rack group b The unique ID is used for remote interaction If this feature is being used select an ID to use for the remote interface ensure the system integrator and or automation scientist knows what this ID is DataPaq User Guide Page 27 of 86 c Either Old style REMP tubes or All other tube types must be selected This is needed as REMP racks need to be scanned in colour whereas the other rack types are scanned in black and white Fill in the details for this plate group General Settings Name for this scan ands 9 by 9 and Nunc Star Unique ID optional mann cryoandnunc Figure 31 Rack Group Configuration for Multirack Scanner 7 Click Finish The scanner is now ready to be used Please note the Multirack scanner does not need to be calibrated the High Speed Single Rack Scanners do need separate calibration The above instructions include all the configuration the scanner requires Page 28 of 86 DataPaq User Guide Export to Excel or Text Configuration To access the Export Configuration Options go to Configure gt Options from the top menu VE File Help Add Scanner Remove Scanner Configure Scanner Add Rack Import Rack Figure 32 Configuration Menu The following dialogue is shown Configure DataPag Bi sv k
55. pen the window If there are no ports available the text No COM ports detected will be shown Internal Mirror Scanner This is used for scanners with an internal mirror to reflect the rack barcode onto the scanning glass Selecting this option brings up the following dialogue Page 38 of 86 DataPaq User Guide Linear 1D Barcode Scanner settings Select the type of scanner that you wish you use internal Mirror Scanner Mirror barcode scanner settings V UPC EAN EXTENSION Figure 44 Internal Mirror Scanner A number of different types of linear barcodes are shown If only one type of barcode will be used it is recommended to deselect the other types This is especially important for barcodes without checksums such as Interleved 2 of 5 as there is an outside chance random noise could be detected as a barcode and without a checksum there is no way no knowing if it is a true barcode or not Ziath Linear Barcode Scanner This is a camera based scanner selecting this option brings up the following dialogue da ot s w doge Barcode Scanner EEren gam a aaa a e ler AE ae ig EE Ziath linear barcode scanner settings V CODABAR V CODE 128 CODE 39 V CODE 93 V EAN 13 V EAN 8 20f5 V UPC A Z UPCE V UPC EAN EXTENSION Figure 45 Ziath Linear Barcode Scanner Options DataPaq User Guide Page 39 of 86 A number of different types of linear barcodes are
56. pply all changes and dose window Cancel all changes and dose window Figure 61 Scan Time Questions Dialogue A Scan Time Question has three sections e Short Name a brief identifier which is used to categorise the answer e Full Question the text of the question which is displayed to the user at runtime e Answer the answer given by the user when the rack is scanned The user interface features are detailed below e Edit Question to change the short name or the Full question double click the text to be changed edit the text and press return e Add Question this adds a question to the bottom of the list of questions e Remove Question to remove a question click the row detailing the question to delete Click Remove Question and the question will be removed e Change Question Order click the row detailing the question to delete To adjust the order which the question appears in click the up and down arrows to move the question up and down in the order e Enable Scan Time Questions select the check box to ensure the questions are asked when scanned Page 52 0f86 DataPaq User Guide Activator Configuration The activator allows a rack to be automatically scanned when a rack is placed on the scanner This works with the Ziath Linear Reader attached to the system and detects the linear barcode on the side of the rack To access the Activator Configuration go to Configure gt Options as shown
57. r Remove Scanner Configure Scanner Add Rack Import Rack Figure 52 Option Menu Selection After clicking this the following window will appear Configure DataPaq Barcode Scann atab enort e scan se Numme File Details Excel File format Text File forma File Name Default File Pattern Example file name Default export directory C Users Kay Desktop Browse File Details Append file data to existing file Does not apply to XML exports Automatic Export Export On Read Do not automatically export a file C Automatically Export File if no read errors occur C Automatically Export File even if read errors occur Export Type Excel Select this to export a single file for each scanned rack Open results file on save Open File After Saving Cancel all changes and close window Figure 53 Configuration Front Page DataPaq User Guide Page 45 of 86 To access the database configuration click on the Database Export icon E Configure DataPaq LAL ali MM ASe a ee e Database Export Miu areae e r Gm Script Connection Export On Read Do not automatically export to the Database O Automatically Export to the Database if no read errors occurr C Automatically Export to the Database even if read errors occurr SQL Script insert into rack id barcode values RACK UUIDE LINEARG insert into tube id rack id ra
58. re 35 Excel Export Ten vprvjvrv4vrv4v4rvr4v4 r4v rrr ee ee 31 Figure 36 Text Export Template arrrrnnnnrrnnnnnnrrnnnnnrrnnnnnnrrnrnnnrrnnnnnenennnnennnrnnnsnnnnnnennnnnnssnnnnnnsnnnnnnesene 34 Figure 37 Test Scan Time Export Results rrrrnrnnnrrnnnnnrrrnnnnnrrnnnnnnrnnnnnnrrnnnnnrrnnnnnernnnnnnennnnnnsnnnnnnnenne 34 Figure 38 Test Scan Time Export showing error in format ccccccsseccccsssececeesececeeeceeeaeeeeeees 35 Figure 39 Test Scan Time Export Results showing error in format 35 Figure 40 Menu Configuration Selection ccccccsccccssseccccesecceceesececeeseceeseeeeceeaeseceeseneceeseneeeetas 36 Figure 41 Configuration window cccccccccccssscccceesececeeseceeceusececausececeeecesseueccessuecesseeceeseaeeeetan 36 Figure 42 Barcode Scanner ICON xsciccdsssnicdcccesesdinsacineceasvsiddeicunasinensned dadtvoensecesicadssavendsueereadiesavanaderaveceues 36 Figure 43 Configure Barcode Dialogue cccccccssseccccsececceesececeuseceeeesececeeesecesauecesseneceeseneeeetas 37 Figure 44 External Linear Barcode Scanner Options ccccccccssseccceeseceeceeseceeeeseceeseeceeeaeeeeeeas 38 Figure 45 Internal Mirror Scanner cccccccessccccesececeesececceescceceuececseeceeseeeeeeseusecessueceesaneeeetas 39 DataPaq User Guide Page 7 of 86 Z Figure 46 Ziath Linear Barcode Scanner Options cccccccsssc
59. s have differing requirements A brief summary of the types is detailed below d HSQL Embedded jdbc hsqldb lt database gt In this case enter the name of the embedded database to use This is only of use if DataPaq is embedded into a larger Java system MySQL jdbc mysql lt server gt lt port3306 gt lt database gt The server is the name or IP address where the database is running and the port is where the MySQL server is listening The database is the name of the database to be connected to JAVA ODBC Bridge jdbc odbc lt datasource gt The datasource is the name of the ODBC connection which has been setup on the local machine If possible it is preferable to configure a direct connection but this option is available should it be required Postgres SQL jdbc postgresql lt server gt lt port5432 gt lt database gt The server is the name or IP address where the database is running and the port is where the Postgres SQL server is listening The database is the name of the database to be connected to Oracle Thin jdbc oracle thin lt server gt lt port1521 gt lt sid gt The server is the DataPaq User Guide Page 43 of 86 name or IP address where the database is running and the port is where the Postgres SQL server is listening f Other This is detailed above g SQL Server idbc jtds sqlserver lt server gt lt port1433 gt DatabaseName lt database gt The
60. score text o lt groupname gt gives the name of the group of samples being scanned o lt uniqueid gt unique ID given to the scan An automatic extension is shown beneath as the text is entered In addition be aware this pattern excludes the extension for the file name if exporting a text file for an Excel file the extension x s will be added if one is not already present and for XML xml will be added Default Export Directory this is the default save directory which will be used in the Save as file chooser or will be saved automatically if automatic export is selected see below File Details if the file to be saved to already exists data will be appended to the file instead of being overwritten and or a dialogue warning of being overwritten is displayed If the export is text the data will be written at the end of the file and if the export is Excel a new Excel sheet will be written Note that this is ignored if export type is XML as it is not possible to append to an XML file Automatic Export if this is selected after scanning the resulting data from the scan will automatically be saved using the options in this dialogue There are two choices for the export either to write the data if there are no read errors detected only empty of confirmed reads are detected or to always write the data regardless of the results in the read Export Type if automatic export is selected this determines the format which will
61. se window After this the optical notch detection will be used if it is connected DataPaq User Guide Page 57 of 86 Dev Using the dialog below oe MIT at MI File Export Barcode Scanner Database Export Time out settings Scan Time Questions Activators Other Settings Add scanners for development purposes A6 scanner AV6 scanner Express scanner Multitack scanner Cancel all changes and dose window The user can add in scanners that are not plugged into the computer This is only needed for testing purposes and should be used unless you are setting up DataPaq for integration Page 58 of 86 DataPaq User Guide DataPaq Operation DataPaq is now ready to use Simply place the rack or racks in the scanner and click the rack image to read the rack E DataPaq File Configure Help Select Scanner Deep Focus Deep Focus Figure 69 Main Operation Dialogue If a linear barcode scanner has been installed the barcode scanner will attempt to read the rack barcode If it fails to do this it will prompt for a rack barcode If the scan time questions have been enabled a dialogue prompting the questions to answer will be shown as in the example below mv Please provide the infor Scan Time Questions podicten dete Figure 70 Scan Time Questions Dialogue Answer the questions and click OK or press enter in the last answer box While scanning DataPaq will attempt to re
62. seeeeeeteuecesseeceeseneeetes 23 Figure 24 Manual Calibration Dialogue rrronrrrnnnnnrrnnnnnrrnnrnnnrrnnnnnernnnnnnrrnrnnnernnnnnerennnnennnnnnnennnnnnneene 24 Figure 25 Image of the Rack with a White Overlay rrrrnrnnrrrnnnnnrrnnnnnrrrnnnnnrrnnnnnernnnnnnrrnrnnnernnnnnenene 24 Figure 26 Overlay CON CC CC arias access casacinaas tas enaaccaiopacusesenasaseananiatodunnascasescouaestnenessmnnosenannaninacpscaueas 25 Figure 27 New scanner has been added ccccccssseccceseccccesseccceusececeeseceeeeusceeeeeneceseeneceeseeeeeetas 25 Figure 28 Configure Scanner Interface cccccccccssseccceesececcescceceesececeeececseeneeeseusecesseneceeseeeeeetas 26 Figure 29 Adding Rack to the Multirack Scanner cccccccsssccccessececeeeececeeescceeauseceseeaeceeeeeeeeetas 26 Figure 30 Choosing the mask type for the Multirack Scanner cccccccssseccceeseceeeeseceeeeeeeeeees 27 Figure 31 Choosing the Rack Type for the Multirack Scanner cccccccsssecceesececeeseceeeeeeeeeees 27 Figure 32 Rack Group Configuration for Multirack Scanner cccccseeccccesseeceeseceeeeneceeeaeeeeeeas 28 Figure 33 Configuration Menu cccccccsseccccssscccceesececsesececceeececeuseceseegeceeseeeeeetsueecesseneceesegeeeetas 29 Figure 34 File Export Configuration Dialogue ccccccccccsssccccesececeeseceeeeesececeeseceseeneceeeaeeeeetas 29 Figu
63. shown If only one type of barcode will be used it is recommended to deselect the other types This is especially important for barcodes without checksums such as Interleaved 2 of 5 as there is an outside chance random noise could be detected as a barcode and without a checksum there is no way no knowing if it is a true barcode or not Note that should you wish to view the image of the barcode scanner this is available in the help menu No Linear Scanner Select this option if there a linear scanner is not being used all barcodes will be reported as plate1 Database Export Configuration The database interaction feature allows for the results of a read to be inputted directly to a database The results will be sent to the database system as long as no tubes fail to read Configuration A database connection can be setup either directly to the most common database systems Oracle Postgres MySQL SQL Server by an ODBC connection configured on the computer running DataPaq or a compatible driver can be uploaded to communicate with another database system e g Derby SQLite To access the configuration go to Configure gt Options as shown w File Configure Help Add Scanner Remove Scanner Configure Scanner Add Rack Import Rack Options Figure 46 Select Option Menu After clicking this the following window will appear Page 40 of 86 DataPaq User Guide Configure DataPaq P h
64. st knows what this ID is Configure the scan General Advanced General Settings Name for this scan 96 SBS rack Unique ID f 965bs ox Cancel Figure 15 Configure the scan Page 18 of 86 DataPaq User Guide 3 The first tab in the figure above shows the General Settings There is a second tab which if clicked displays the following options E Configure the scan General Advanced All other tube types induding new style REMP tubes Old style REMF tubes Figure 16 Advanced settings for configuring the scan If old style REMP tubes are being used the bottom option must be checked This is because REMP tubes need to be scanned in colour whereas all other tubes can be scanned in black and white 4 The layout for this rack group will be displayed NB the following image is for the Deep Focus and High Speed Scanners The Express Rack Group Image is shown in Figure 18 x DataPaq JE EA File Configure Help Figure 17 Rack Group Image for a Deep Focus and High Speed Scanner DataPaq User Guide Page 19 of 86 Figure 18 Rack Group Image for the Express Scanner Additionally the Express has a further setting in the scan configuration under the Advanced tab where the user is able to set the exposure of the camera The Express will automatically be detected by DataPaq and the option given to change the setting As the Express is a
65. tall DataPaq Linear Rack Barcode Scanner Version 2 Installation ZTS 1DR2 Figure 1 Linear Rack Barcode Scanner Version 2 attached to Ziath 2D barcode scanner The appropriate bracket for the scanner needs to be attached to the scanner This has a strong magnet to accurately locate the linear scanner This does not need a driver simply attach the scanner to a USB port Registration Automatic Registration The first time the software is run it this screen will appear Install Sofware License Activate your software If you have a software license key please press the Activate software now button If you do not have a license key please either contact your vendor or press the Create trial license button Cancel Activate software now Create trial license Click on Activate software now and a new window will appear Page 12 0f 86 DataPaq User Guide Install Sofware License lt Back Please provide the following details Software Licence key Activate software now Cancel software activation Figure 2 Licence Registration Dialogue Ensure the computer is connected to the internet and enter the licence key enclosed with the scanner Click Activate software now and DataPaq will start to register the installation If DataPaq cannot connect to the licence server perhaps due to a local security restriction on your system for example it will prompt for manual registration Manual Registra
66. th Ltd The Studio High Green CB22 5EG UK Registered as a limited company in England amp Wales Company number 05598930 Ziath Ltd certify with sole responsibility that the following equipment Description Express 2D Barcode Scanner Model Number ZTS EXP adheres to the requirements of 89 336 EEC for EMC and 73 23 EEC for low voltage safety based upon adherence to the following standards EN 55022 1998 Class B EN 55024 1998 EN 61000 4 2 1995 A1 1998 A2 2001 EN 61000 4 3 2002 A1 2002 IEC 61000 4 4 1995 A1 2001 A2 2001 IEC 61000 4 5 1995 A1 2001 IEC 61000 4 6 1996 A1 2001 IEC 61000 4 11 1994 A1 2000 IEC 61000 3 2 2000 IEC 61000 3 3 1995 A1 2001 EN60950 Designed manufactured and distributed by Ziath Ltd Nak p Neil Benn Director DataPaq User Guide Page 81 of 86 ROHS C Ziath Ltd The Studio High Green Great Shelford Cambridge CB22 5EG Registered as a limited company in England amp Wales Company number 05598930 Ziath Ltd certify with sole responsibility that the following equipment Description Express 2D Barcode Scanner Model Number ZTS EXP adheres to the requirements of Restriction of Hazardous Substances Directive European Directive 2002 95 EC RoHS and are considered to be verified as RoHS compliant Levels are beneath the stated maximums detailed below ROHS restricted Substance Cadmium and its compounds Mercury and its compounds Hexavalent Chromium and its
67. tion If the following window appears there is a problem registering the licence automatically this is usually caused by security software on the computer Install Software License x Back No internet connection detected Please check that your computer is connected to the internet and that your local security settings are not blocking access from this program If you are NOT able to fix this problem you may proceed by pressing the Manual Key Validation button Alternatively if you have fixed the problem please click the Activate Software Now button Activate software now Manual Software Registration Figure 3 No Internet Connection Dialogue Click on Manual Software Registration and the following window will appear Enter License Code Cannot register Licence this is typically due to a firewall blocking access to the licence server You will need to register your software manually Please follow these steps Step 1 Click the Save Device ID button below Step 2 Save the file to your computer Step 3 Visit http www ziath com licencemanager getLicence html a Step 4 When prompted by the web browser select the file that you created in step 1 and fill in all the other details as requested Step 5 Finally press the Load Licence File button and select the licence file that you saved using your web browser Save Device ID Load Licence File Cancel DataPaq User Guide Page 13 of 86 Figure
68. to input a series of defined questions to the user scanning a rack To configure the questions go to Configure gt Options as shown in figure 48 Add Scanner Remove Scanner Configure Scanner Add Rack Import Rack Figure 59 Select Options Menu The following screen below will appear Configure DataPag IL y an HIL dn Barcode Scanner Database Export Time out settings Scan e Questons File Details Excel File format Text File format ms File Name Default File Pattern Example file name Default export directory C Users Kay Desktop Browse File Details Append file data to existing file Does not apply to XML exports Automatic Export Export On Read Do not automatically export a file C Automatically Export File if no read errors occur C Automatically Export File even if read errors occur Export Type Excel Select this to export a single file for each scanned rack Open results file on save Open File After Saving I Apply all changes and dose window Cancel all changes and dose window Figure 60 Configure Dialogue DataPaq User Guide Page 51 of 86 Select the Scan Time Questions icon and the following screen will appear Configure DataPaq ILLA sv am o gt li Ss Sg i eee ere geo e a e ord nog L a Taaa Scan Time Questions Mi Waat logs _ Enable Scan Time Questions Short Name Full Questi ion Add Question I A
69. ve options Manual Linear Scanner This is where the linear barcode is typed in by the user manually or scanned in with a handheld scanner External Linear Scanner This is an external laser based scanner selecting this option brings up the following dialogue DataPaq User Guide Page 37 of 86 r nail ale p pone F ledd Barcode Scanner feler a a a eel a terse cle A cielo e ae e S A E Linear 1D Barcode Scanner settings External Linear Barcode Scanner settings No COM ports detected Select the com port for the scanner unset v Test barcode scanner Awaiting Results Figure 43 External Linear Barcode Scanner Options Plug the linear scanner into a USB port It should be automatically detected once it has loaded onto the PC usually indicated by a beep e Test This will trigger the barcode scanner Before testing place a barcoded rack on the scanner and click the button If the scanner successfully reads the barcode the text will be green the text will be red if it cannot talk to the scanner or the scanner cannot read a barcode If the scanner does not automatically load check the options below e Select Com Port This is needed to determine the address the software needs to use to talk to the barcode scanner If this is not known it can be determined by plugging the scanner in and out of the machine and inspecting the ports to refresh the ports just close and o
70. w SCannel cccccccssseccccessececeesececeeeceeseuseeeeausecesseneceeeeeeeeetas 15 Figure 9 Add New Scanner Interface rrrrrnnnnnrrnnnnnnrnnnnnrrnnrnnnrrnnnnnnrnnnnnnrnnnnnnennnnnnevnnnnnssnnnnnnsennnnnesene 16 Figure 10 Configuration NE 16 Figure L1 Browse Ment ecesenerienna a a E E 16 Figure 12 Example of Rack group image for an imported rack cccccccsseecccesececeeeeceeeeeeeeeees 17 Figure 13 Configuration Menu 4hvvvrvrvvrvvvvvvvvrrr eee 17 Figure 14 Select Rack Type User Interface rrrrnnnnnnrnnnnnnrnnnnnnnrnrnnnnrnnnnnnrnnnnnnnrnnnnnernnnnnsennrnnnsnnnnnnesene 18 Figure 15 Configure the SCAM wisiiseescdvcoasiinisdeajananesaddocedsanccdieensntiosabsandeesenndbiachstedagwanendsianenssaanmsiadaunosaedeaees 18 Figure 16 Advanced settings for configuring the scan cccccccssseccceesececeeeeeeeceesececseneceesaeneeeees 19 Figure 17 Rack Group Image for a Deep Focus and High Speed Scanner ccccccsseeeeeeeseeeees 19 Figure 18 Rack Group Image for the Express Scanner cccccccsseccceesececeeeeccecaeseceseeneceeseeseeetes 20 Figure 20 Calibrate Rack Group PRS 21 Figure 21 Calibration Instructions cccccccccsseccccesececseneccecesccecauseceeeegecesseeseceseuecesseeceeseneeetes 22 Figure 22 SS 22 Page 60f70 DataPaq User Guide Figure 23 Successful Calibration cccccccccsssccccessececeeseceecesececeuececseecec
71. will output 2009 06 08 21 24 44 for the scan date time For full details see the table in Date Format Symbols in the second part of this appendix S rack barcode the barcode of the rack the tube is in S container textRow the row of the tube from A H or more if the format is more than 96 wells Should the row be required in numeric format enter container row Note that this will count the first row as zero to count from 1 enter Sfcontainer row 1 S container colmun 1 the column As above the counting is from zero here 1 is used for counting from 1 S container barcode the barcode of the container Line 5 instructs the outputter to stop cycling through all the tubes in the rack Line 6 instructs the outputter to stop cycling through all the racks In addition to the result file output there is also a template for ScanTimeQuestions output The default of this is as follows Line Number Line Text lt if scanTimeQuestionsEnabled gt Scan Time Questions E 4 iist scanTimeQuestions as question gt S 6 ems C 8 f o O The lines are detailed as follows DataPaq User Guide Page 69 of 86 Line 1 scanTimeQuestionsEnabled is set if the enable check box is selected in the configure Scan Time Questions Dialogue The if section ties with the if on line 8 This ensures that this section will only be executed if the scan time questions have been enabled Line 2
72. ype Other Choose jar file Choose driver dass Connection Details Connection URL url format unknown Username Password Cancel all changes and close window Figure 49 Database Connection Configuration This window allows for the configuration of the connection to the database The input elements are described below 1 Select Database Type in this option the main database systems can be selected a HSQL Embedded Page 42 of 86 DataPaq User Guide g MySQL JAVA ODBC bridge Postgres SQL Oracle Thin Other see below SQL Server 2 Choose Jar File this is only active if Other has been selected in the previous option In this case locate a JDBC compatible driver for your database which is packaged in a jar file to use Ensure that this file is locatable in the future for example store it on the hard drive of the machine running DataPaq Should there be difficulty in locating a driver for your database system contact Ziath at support Qziath com 3 Choose Driver Class this is this is only active if Other has been selected in the previous option In this case select a driver class to use Should there be more than one option consult the documentation from the driver manufacturer Should there be difficulty in locating a driver class for your database system contact Ziath at support Qziath com Connection URL this will differ from system to system as different database system

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DataPaq™ 2.40 User Manual