CopyDataII_UserManua..
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1. Version 2 0 April 16 2013 G GubbsInc WebSite GubbsInc GubbsInc03 files CopyDatall_UserManual_002 doc2. Save Log as PDF C XPS Figure 11 Misc Tab 4 7 1 Keep log files text box Enter 0 here to keep all log files If a number other than 0 is entered log files whose age is greater than the number of days entered will be deleted at the end of a Copy event 4 7 2 Minimize to System Tray check box If checked Copy Data II will be automatically minimized to the System Tray after a Copy event 4 7 3 Additional Log Options check box Log files are saved as txt files If this box is checked users can additionally have the log files saved as Portable Document Format pdf or XML Paper Specification xps These file types are un editable files Version 2 0 April 16 2013 G GubbsInc WebSite GubbsInc GubbsInc03 files CopyDatall_UserManual_002 doc vers Gubbs Copy Data II 1 x x User Manual Page 18 of 23 4 8 Top Level Buttons ur ATT Figure 12 Top Level Buttons 4 8 1 Minimize to System Tray button Users click this button to manually minimize Copy Data II to the system tray Users will be prompted with the following dialog box Minimize to tray This action will minimize CopyData II to the System Tray to a Gubbs Inc icon Do you wish to continue Figure 13 Minimize to System Tray dialog box 4 8 2 Execute button Users click this button to manually execute a Copy event Users will be prompted with the following dialog boxes Are you sure you wish to Exe
3. 23 4 2 Excluded Directories Table The Excluded Directories Table lists the directories that will be ignored when copying files Xcalibur QuickQuanCannedDemo PK curve dataCo _ Excluded Directory lt Add X Dir gt Remove X Dir Figure 5 Excluded Directories Table 4 2 1 Add X Dir Click the Add X Dir button to add directories to be excluded 42 2 Remove X Dir To remove directories from this table select one or more rows and click the Remove X Dir button 4 3 Action Type There are two types of Copy Actions that can be performed by Copy Data II o Copy o Copy then Move to Temp Location Figure 6 Action Types Version 2 0 April 16 2013 G GubbsInc WebSite GubbsInc GubbsInc03 files CopyDatall_UserManual_002 doc vee Gubbs Copy Data II 1 x x User Manual Page 11 of 23 4 3 1 Do not copy files box Enter 0 to ignore this feature This box applies to both Copy and Copy then Move action types If Copy Data II is being run on a schedule and the Action Type is Copy then Move it is possible that the event may occur during an active data acquisition event on the data acquisition workstation It would not be desirable to Move files during an active data acquisition event because movement of files may cause the data acquisition system to fail Users can tell Copy Data II to ignore files that are older than say I day old which would most likely ignore f
4. SSE ED 23 Table of Figures Figure FIGURE COPYDATA II WINDOW INITIAL VIEW c cccscsssssesesssessseseseseseseceseseseseseseseseresesesevesesesesesesesesesecesesesereseresesesesenens FIGURE 2 INCLUDED DIRECTORIES sje see eee FIGURE 3 CREATE ROOT DIRECTORY WINDOW cccccsesesesssssssesssesesesesesesessseseceseseseseseseseseveseseseseseseseseseseseseseresereseresenesenenens FIGURE 4 CREATE ROOT DIRECTORY WINDOW MODIFIED CHOICE FIGURE 5 EXCLUDED DIRECTORIES TABLE FIGURE 6 ACTION TYPES coocoococcnncnccononnnnnnnonons FIGURE 7 THERMO VENDOR ACTIONS cccsessessenciieessnsseosooreecrsssnoenotecestersoseccnecenssvoovsnetcesensrsdesnonecsnessnssnstnervessondenencasserssesnoce FIGURE 8 ETE BX CHUSTONS TAB NNN FIGURE 9 SCHEDULE TAR skrent FIGURE 10 COPY DATA II SCHEDULER dakiske svein babas FIGURE MSCTABA Avesta OO ela FIGURE 12 TOPLEVELBUTTONS dise FIGURE 13 MINIMIZE TO SYSTEM TRAY DIALOG BOX FIGURE 14 EXECUTE DIALOG BOX I FIGURE 15 EXECUTE DIALOG BOX 2 FIGURE 16 CLOSE DIALOG BOX rrrrnennrorvvnrrrnrnn Version 2 0 April 16 2013 G GubbsInc WebSite GubbsInc GubbsInc03 files CopyDatall_UserManual_002 doc QVEE Gubbs Copy Data IT 1 x x User Manual Page 3 of 23 Table of Figures Figure Page Number FIGURE 17 THERMO XCALIBUR PROCESSING SETUP ccccsccccccecsessssececececsesssececececeessaeeecececeeneaeaeseeecseseaeaeeeeeesesesneaeeeeeeeeeenees 21 FIGURE 18 THERMO XCALIBUR SEQUENCE SETU
5. certain extensions may be configured to be ignored in the Copy or Move event Note that wildcards may be used e g use x1 to account for xIs xlsx xlsm etc File Exclusions Schedule Misc File extensions to be excluded from Copy Data events wildcard allowed at the end of the extension e g m i lt Add Extenstion Remove Extenstion s Figure 8 File Exclusions Tab 4 5 1 Add Extension button Users can click this button to add file extensions to be ignored in the Copy or Move event 4 5 2 Remove Extension s button To remove extensions from the list select one or more items and click this button Version 2 0 April 16 2013 G GubbsInc WebSite GubbsInc GubbsInc03 files CopyDatall_UserManual_002 doc vaar Gubbs Copy Data II 1 x x User Manual Page 15 of 23 4 6 Schedule Tab Copy Data II can be minimized to the System Tray and ran automatically according to a schedule File Exclusions Schedule Misc MV Run automatically on a schedule Schedule Last Copy Event Starting 17 Jan 2013 at 01 45 Recurring every weekday Copy Event Type Scheduled Configure Schedule Mon April 15 2013 13 12 Next Scheduled Copy Event Tue April 16 2013 01 45 Figure 9 Schedule Tab 4 6 1 4 6 2 4 6 3 4 6 4 4 6 5 Run automatically on a schedule check box Check this box if users wish to run Copy Data II on a schedule Note In order to minimize
6. 6 2013 G GubbsInc WebSite GubbsInc GubbsInc03 files CopyDatall_UserManual_002 doc vee Gubbs Copy Data II 1 x x User Manual Page 20 of 23 5 Command Line Switches Copy Data II has several switches that allow users to call Copy Data II from an external program e g the command line or from a Copy Data II shortcut Note that any combination of switches may be included in the argument string passed to Copy Data II 5 1 5 2 5 3 5 4 ini switch Copy Data II settings are saved in a ini file named C GubbsInc CopyDatalIMni CopyDatall ini Users can create different settings and save them as different ini files and call these different ini files in a command prompt For example a shortcut to the CopyDatall exe file may be placed on the desktop with the following argument string in the Target box of the shortcut Properties Window C Program Files Gubbs Inc CopyDatalI CopyDatalIL exe C GubbsInc CopyDatalIMIni CopyDatall_Long ini When the shortcut is run the settings from the ini file CopyDatall Long ini will be loaded DoAuto switch If CopyDatall exe is called from the command line with the switch DoAuto contained in the argument string Copy Data II will o Open o Immediately execute a Copy event o Close or minimize to the system tray if so configured For example C Program Files Gubbs Inc CopyDatalI CopyDatall exe DoAuto S switch Users can pass a Source Directory to Copy Dat
7. Manual Page 6 of 23 3 Gubbs Inc Copy Data II software solution Gubbs Inc Copy Data II has all the features described in the proposed workflow As well it contains the following additional features Accepts command line switches that can be used to call Copy Data II from an external application o Different copy scenarios may be stored in different ini files and called from different desktop shortcuts o Copy Data II may be called with different command line switches to perform specific instructions Log files are created detailing each copy move delete sld modification action o For regulated environments logs may be saved as pdf or xps Exclude files with user defined file extensions or user defined locations Has raw file vendor specific features o Thermo Automatically update sequence file sld Path Processing Method Calibration Method and Instrument Method columns gnore copying Thermo date time stamped sequence audit files Version 2 0 April 16 2013 G GubbsInc WebSite GubbsInc GubbsInc03 files CopyDatall_UserManual_002 doc Tver Gubbs Copy Data II 1 x x User Manual Page 7 of 23 4 Copy Data II Operation Below is a figure showing the Copy Data IT main window A description the general operation of Copy Data II follows G CopyDatall v1 0 11 0 e A oeaan E Source Directory Destination Directory Temporary Location Directory C CopyDataPrac Xcalibur C C
8. P scssssssccececsesssececececsesssaeceeececseseseeecececseseaeaesececeeseaeaeeeeeceesesseaeeeeeeeesenees 22 FIGURE 19 THERMO XCALIBUR RUN SEQUENCE ccccsesssceeececsesssececccecseseaececececsesesaeeecececsensaeaesececeesesaeaeeeecceeseneaeeeeeeeesenees 23 Version 2 0 April 16 2013 G GubbsInc WebSite GubbsInc GubbsInc03 files CopyDatall_UserManual_002 doc vee Gubbs Copy Data II 1 x x User Manual Page 4 of 23 1 Abstract An age old problem with scientific data acquisition is local workstation hard drive raw data administration Local data acquisition workstation hard drives become full and require transfer archival backup or deletion of data acquisition raw data and related files This is especially true for full scan mass spectrometry workstations whose raw data files can be huge Manual data file backup archive workflows most often to a network shared drive may be implemented but can be troublesome and tedious e Manual copy paste actions completed using Microsoft Windows Explorer can be exceedingly slow especially when trying to copy tens of gigabytes of data There is a significant amount of overhead associated with the use of Windows Explorer e If an error occurs during a Microsoft Windows Explorer copy event Windows Explorer terminates and it is unknown which data files have been copied and which have not been copied Many commercial off the shelf COTS software application file copy tools are avai
9. a II that will override the Source Directory s defined in Copy Data II For example C Program Files Gubbs Inc CopyDatalII CopyDatall exe DoAuto VS C Xcalibur 00021 If this argument string is passed Copy Data II will o Open o Immediately execute a Copy event o The Source Directory s configured in Copy Data II will be overridden with C Xcalibur 00021 o Close or minimize to the system tray if so configured sld switch Thermo Xcalibur has a feature that allows users to call an external application after the execution of a processing method pmd This feature has a switch S that will pass the path of the sequence file sld to the external application Version 2 0 April 16 2013 G GubbsInc WebSite GubbsInc GubbsInc03 files CopyDatall_UserManual_002 doc vaar Gubbs Copy Data II 1 x x User Manual Page 21 of 23 Copy Data II can interpret the sld path passed to it and use it to override the currently configured Source Directory s The following is a suggested workflow to automatically execute Copy Data II using the sequence path passed to Copy Data II from the Xcalibur pmd 1 The user would configure a special pmd that has enabled a Run Program action Activate the Programs window from the menu View Programs Check the Enable box in the first column so that the value changes to Yes Action is Run Program The Program or Macro Name is the path to the installed Copy Data lL
10. ails of sld events Sometimes large numbers of these audit files are created and clutter the data acquisition directory If users check this box Copy Data II will ignore sld audit files and not include them in the Copy event and will not modify their paths Check Modify Paths in Destination Directory button The very first time Copy Data II is run manually on a Source Directory the entire process can be long if the Source Directory has a large amount of data e g tens to hundreds of gigabytes and the user may have to kill the process in order to free up the instrument to acquire data Killing the process can leave some sld files in a not modified state Users can click this button to inspect all the sld files located in the Destination Directory s to check if the sld paths have been updated and modify if needed Clean up temporary GubbsABC files button In the sld modification process Copy Data II must make a temporary file whose file name contains the fragment GubbsABC These files are deleted at the end of the process In the scenario describe above in Section 4 4 1 4 these temporary files may not get deleted Users can click this button to delete all instances of GubbsABC sld files Version 2 0 April 16 2013 G GubbsInc WebSite GubbsInc GubbsInc03 files CopyDatall_UserManual_002 doc TLVERS Gubbs Copy Data II 1 x x User Manual Page 14 of 23 4 5 File Exclusions Tab Files with
11. cute this CopyData action Figure 14 Execute dialog box 1 Version 2 0 April 16 2013 G GubbsInc WebSite GubbsInc GubbsInc03 files CopyDatall_UserManual_002 doc vaar Gubbs Copy Data II 1 x x User Manual Page 19 of 23 If the Do not copy files less than text box contains a value other than 0 the user will be asked if this setting is to be overridden i e copy or move all files no matter their age Ignore files CopyDatall has been configured to ignore files that are less than 1 day old Do you wish to ignore this setting Cancel Figure 15 Execute dialog box 2 4 8 3 Close button Users click this button to close Copy Data II If the Minimize to System Tray check box see Section 4 7 2 is checked users will be prompted with this dialog box F Minimizing to System Tray a CopyData I has been configured to minimize to the System Tray This action will not close CopyData I the app will be minized to the System Tray Figure 16 Close dialog box 4 8 4 Edit button Users click this button to put Copy Data II in the edit mode to make changes to settings 4 8 5 Save button Users click this button to save any changes made to Copy Data II settings 4 8 6 Cancel button Users click this button if users make changes to Copy Data II settings while in edit mode and wish to discard all changes Version 2 0 April 1
12. d by Destination Directory pres lt lt OK Cancel Figure 4 Create Root Directory window modified choice If it is desired that the portion of the C Xcalibur QuickQuanCannedDemo portion of the Original Directory is to be replaced by the path defined in the Destination Directory then the user would click the blue gt gt arrow see Figure 4 above Define Destination Directory Users must define the Destination Directory by selecting a row and clicking the blue Define Destination Dir button located above the Destination Directory column The Destination Directory is the root directory to which files will be copied or moved For example in the configuration shown in Figure 1 files located in the Source Directory C Xcalibur QuickQuanCannedDemo PK curvedataCopyData will be copied to the Destination Directory C CopyDataPrac Xcalibur Since the Root Directory is defined as C Xcalibur the new path of files will be C CopyDataPrac Xcalibur QuickQuanCannedDemo PK curvedataCopyData Define Temp Location If Action Type is set to Copy then Move to Temp Location then users must define the Temporary Location by clicking the Define Temp Location button located above the Temporary Location Column Version 2 0 April 16 2013 G GubbsInc WebSite GubbsInc GubbsInc03 files CopyDatall_UserManual_002 doc Iver Gubbs Copy Data II 1 x x User Manual Page 10 of
13. drugs 3 Unknown steroids02 Sample3 C Xcalibur SimS ov Coeur SinSouceD ae GubbsSilC Kenan uge sad CoppData 8 l For Help press F1 NUM 4 15 2013 9 35 Figure 18 Thermo Xcalibur Sequence Setup Version 2 0 April 16 2013 G GubbsInc WebSite GubbsInc GubbsInc03 files CopyDatall_UserManual_002 doc vaar Gubbs Copy Data II 1 x x User Manual Page 23 of 23 3 When starting acquisition the user would check Programs in the Processing Actions section Note Quan does not need to be checked Run Sequence Acquisition Options User Gubbs Instrument Start Instrument Simulation MS Yes Run Rows 1 3 Priority Sequence V Start When Ready Change Instruments Processing Actions Instrument Method i e v Start Up Browse MI Quan p Qual Shut Down Browse H Reports Programs 7 Programs Pre Acquisition Browse E a Create Wuan Summary Post Acquisition Browse Run Synchronously Pre Acquisition After Sequence Set System On Standby 5 Off Figure 19 Thermo Xcalibur Run Sequence 4 Copy Data II will open execute and close All this is done in the background transparent to the user 6 System Specifications Item Requirement Operating System Windows 7 SPO or SP1 32 bit or 64 bit DotNet DotNet 4 0 supplied in Copy Data II installer If Thermo Actions Xcalibur 2 0 7 or newer Thermo XDK MUST be installed Drive Space 1 Gb RAM 250 Mb
14. es CopyDatall_UserManual_002 doc vaar Gubbs Copy Data II 1 x x User Manual Page 12 of 23 4 3 3 2 Delete Files in Temporary Location checkbox Enter 0 to ignore this feature Entering 0 means that files located in the Temporary Location will never be deleted automatically by Copy Data II Files can be deleted manually in Windows Explorer or by clicking the Copy Data II Delete All Temporary Location Files Now button Files located in the Temporary Location that are older than the entered number of days will be deleted The deletion event occurs at the end of any Copy event 4 3 4 Delete All Temporary Location Files button Click this button to manually clear all files located in the Temporary Location Directory 4 4 Vendor Actions Copy Data II can perform actions that are unique to specific vendor files 4 4 1 Thermo V Perform Thermo Actions SLD Action Modify Paths C DONT Modify Paths Vv Ignore time stamped sid audit files Check Modify Paths in Destination Directory Clean up temporary GubbsABC files Figure 7 Thermo Vendor Actions A desirable action for users is to copy all acquired data to a network location and process data there This allows the user to take advantage of company level backup procedures to automatically backup and or archive processed data A problem with Thermo data is that data is processed according to acquired raw and processing method pmd instru
15. exe Parameter DoAuto tells Copy Data II to execute and close Parameter S passes the path of the sld to Copy Data II to override the Copy Data II Source Directory s mo aonp r DE y Thermo Xcalibur Processing Setup Programs drugx_CopyData_DoAuto_pS pmd Int Std File View Options GoTo Help Desa amp Programs E Sample type E Enable Std QC Unk Other Action Program or Macro Name Sync Parameters 1 Yes Yes Yes Yes Yes Run Program C Program Files x86 Gubbs Inc Cc Yes E Yes Yes Yes Yes Run Program Yes NUM Figure 17 Thermo Xcalibur Processing Setup Version 2 0 April 16 2013 G GubbsInc WebSite GubbsInc GubbsInc03 files CopyDatall_UserManual_002 doc vaar Gubbs Copy Data II 1 x x User Manual Page 22 of 23 2 The user would then configure an additional blank sample at the end of the sequence that contains the Copy Data pmd fa dy Thermo Xcalibur Sequence Setup CopyData_001 sld File Edit Change Actions View GoTo Help LA mm S sWe Oe Ren MASAN DPE EN y Sample Type File Name Sample ID Path Inst Meth Proc Meth Status Acquisition Queue 1 Unknown steroids02 Sample1 C Xcalibur SimSou C YXcaliburySimS ourceD ata GubbsSir C XcaliburSimSourceD ata drugs E Run Manager 2 Unknown steroids03 Sample2 C Xcalibur SimSou C Xcalibur SimS ourceD ata GubbsSir C Xcalibur SimS ourceD atar
16. iles included in an active data acquisition event Of course if typical data acquisition includes sequences lasting longer than 2 days then the number should be set to 2 When performing a manual Copy event clicking Execute button the user is given the option to override the Do not cope files setting and copy or move everything Copy Action Type If Copy is chosen then files will be copied to the Destination Directory and WILL NOT be moved from the Source Directory Copy then Move to Temp Location Action Type If Copy then Move to Temp Location is chosen files will be copied to the Destination Directory and then MOVED to the Temporary Location defined in the Included Directories table o Files located in Excluded Directories will be ignored 4 3 3 1 Delete empty directories in Source Directory checkbox If checked Copy Data II will attempt to delete empty directories located in the Source Directory To maintain a certain level of directory subdirectory structure do this Place a text file named KeepDir dnr or some file extension of your choice in the directory whose structure you wish to maintain In the File Exclusions tab of Copy Data II add the file extension dnr Since the directory will have a file after Copy Move events have completed the directory subdirectory will not be deleted Version 2 0 April 16 2013 G GubbsInc WebSite GubbsInc GubbsInc03 fil
17. lable and can be readily found in an internet search Software solutions for file copy workflows because they use Windows API calls to copy delete which execute much more quickly than through Windows Explorer However few 1f any COTS file copy tools exist that can account for the nuances involved in scientific data file maintenance e Itis often not advisable to immediately delete raw data files from the data acquisition workstation after a copy event in case it is required in the future to go back to the original raw data file e g copy paste event was corrupt or copied file was corrupted in the future for some reason e Some vendor data e g Thermo sequence files contain sample specific path columns that have referenced file paths and or directory paths hardcoded in the column cell If this type of data is moved and it is desired to continue to process the files the path columns of the sequence file must be updated to the new directory paths and or the referenced file paths after the data files have been moved e It is often desirable to maintain a certain directory structure in the new location that has meaning to the user E g a data directory structure may be C Vender Data Department Year Month If would be desirable to have this data structure mimicked in the new directory location of the transferred data files e A scheduled data copy event should allow users to NOT copy move data less than a certain number of days old With
18. ment method meth and calibration xcal files whose locations paths are defined in the sequence sld at the time of acquisition If all required data files are moved to a new location users must user Xcalibur to manually open the sld file and re define the paths of the raw pmd meth and xcal files Version 2 0 April 16 2013 G GubbsInc WebSite GubbsInc GubbsInc03 files CopyDatall_UserManual_002 doc vee Gubbs Copy Data II 1 x x User Manual Page 13 of 23 Copy Data II can if desired automatically open the sld and modify the raw pmd meth and xcal files to reflect their new location 4 4 1 1 4 4 1 2 4 4 1 3 4 4 1 4 4 4 1 5 Perform Thermo Actions checkbox Users check this box to activate Thermo specific features in Copy Data II SLD Action option group box 4 4 1 2 1 Modify Paths option button Users select this button if they want Copy Data II to modify the paths of the raw pmd meth and xcal files to reflect their new location after a copy event 4 4 1 2 2 DON T Modify Paths option button Users select this button if they DON T want Copy Data II to modify the paths of the raw pmd meth and xcal files to reflect their new location after a copy event Ignore time stamped sld audit files check box Xcalibur and Xcalibur controllers such as Aria Transcend sometimes create Sld copies that are date time stamped and are meant to be audit tr
19. opyDataTemp Xcalibur Thermo IV Perform Thermo Actions SLD Action Modify Paths DONT Modify Paths Check Modify Paths in Destination Di Figure I Copy Data II window initial view Vv Ignore time stamped sid File Exclusions Schedule Misc File extensions to be excluded from Copy Data events wildcard allowed at the end of the extension eg ar Version 2 0 April 16 2013 G GubbsInc WebSite GubbsInc GubbsInc03 files CopyDatall_UserManual_002 doc Tver Gubbs Copy Data II 1 x x User Manual Page 8 of 23 4 1 Included Directories Table The Included Directories lists the directories from which files will be copied or moved i Included Directories eu dave Lance Define Source Root Dir Define Destination Dir Define Temp Location Source Directory Source Root Directory Destination Directory Temporary Location Directory lt Add Source Der gt C Xcalibur IQuickQuanCannedDemo PK curve dataCopyData C Xcalibur C CopyDataPrac Xcalibur C CopyDataTemp Xcalibur gt Remove Source Dir Figure 2 Included Directories 4 1 1 Define Source Directory Users define one or more Source Directories directories from which files are to be copied moved by clicking the blue Add Source Dir button located to the right of the Included Directories table o Once configured the Source Directory may be modified by selecting a row and clicking the blue Modify S
20. ource Directory button located above the Source Directory column Users may remove one or more Source Directories by selecting the directory s and clicking the red Remove Source Dir button located to the right of the Included Directories table 4 1 2 Define Source Root Directory Users must define the Source Root Directory by selecting a row and clicking the blue Define Source Root Dir button located above the Source Root Directory column The Root Directory is the portion of the directory path that will be replaced by the Destination Directory when files are copied When the button is clicked the user is presented with the window shown in Figure 3 below r Create Root Directory Original Directory of Data pa a curve dataCopyDatal Root Directory of data to be replaced by Destination Directory gt a em Version 2 0 April 16 2013 G GubbsInc WebSite GubbsInc GubbsInc03 files CopyDatall_UserManual_002 doc vaar Gubbs Copy Data II 1 x x User Manual Page 9 of 23 Figure 3 Create Root Directory window In the example above the user has chosen that the C Xcalibur portion of the Original Directory is to be replaced by the path defined in the Destination Directory portion of the Included Directories table see Section 4 1 3 r Create Root Directory Original Directory of Data p curve dataCopyDatal Root Directory of data to be replace
21. out this type of feature actively acquiring or required data files will be copied moved which may interfere with the operation of the data acquisition system e g an actively acquired Sciex Analyst wiff file or scheduled Thermo Quick QuanQ daughter directory sequence files e Some data files e g template instrument method files should never be moved because they may be needed in the normal operation of the data acquisition instrument Version 2 0 April 16 2013 G GubbsInc WebSite GubbsInc GubbsInc03 files CopyDatall_UserManual_002 doc vee Gubbs Copy Data II 1 x x User Manual Page 5 of 23 e Some levels of data directory structure may need to be maintained in order to aid in data acquisition E g All the data and empty directories in the underlined portion of this data directory may be allowed to be deleted but the non underlined portion may be required to remain for future data acquisition events C Xcalibur QuickQuan Data Microsomal Metabolic Stability 2010 01 29 RLM 01252010_145128 01_ MS012510 1N 2 Proposed Workflow From a high level the following would be a desirable workflow for an automated data acquisition workstation backup software solution either manually executed within the software or ran using a scheduler within the software 1 COPY files from one or more user defined directories on the local data acquisition workstation to the network a A defined portion of the data file path will be
22. preserved in the network location b Ignore data files that are older than a user defined number of days This will prohibit the software from attempting to copy move actively acquiring raw data files e g wiff or sld c Ignore files located in user defined Excluded Directories E g Data acquisition system required template files etc d Automatically modify any Thermo sequence file sld path columns to reflect the new location of the data 2 MOVE the just copied files from the data acquisition workstation to a temporary location preferably on the local data acquisition workstation a This action cleans up the data acquisition directories but the raw data files have been moved not deleted Ignore files that are older than a user defined number of days Ignore files located in user defined Excluded Directories Ignore files with user defined file extensions Delete the production directory s files and empty directories except for Excluded Directories after a certain level of directory structure can 3 DELETE the files located in the temporary location that are older than a certain number of user defined days a The user defined number of days can be set at such a number that it is highly probable that there would be no need to access the original raw data file Version 2 0 April 16 2013 G GubbsInc WebSite GubbsInc GubbsInc03 files CopyDatall_UserManual_002 doc veg Gubbs Copy Data II 1 x x User
23. to the system tray after a scheduled copy event users must check the Minimize to System Tray check box located in the Misc Tab of Copy Data II see Section 4 7 2 Schedule text box This text box describes the currently defined schedule If the Run automatically check box is unchecked this text box will be empty or contain None Last Copy Event text box This text box lists the last time any Copy event occurred Copy Event Type text box This text box lists the type of Copy event that last occurred e g Scheduled or Manual Next Scheduled Copy Event text box This text box lists the next scheduled Copy event Version 2 0 April 16 2013 G GubbsInc WebSite GubbsInc GubbsInc03 files CopyDatall_UserManual_002 doc Svea Gubbs Copy Data II 1 x x User Manual Page 16 of 23 4 6 6 Configure Schedule button Users click this button to configure a schedule see Figure 10 below Copy Data II Scheduler Thursday January 17 2013 Figure 10 Copy Data II Scheduler Version 2 0 April 16 2013 G GubbsInc WebSite GubbsInc GubbsInc03 files CopyDatall_UserManual_002 doc vaar Gubbs Copy Data II 1 x x User Manual Page 17 of 23 4 7 Misc Tab Copy Data II has several miscellaneous settings File Exclusions Schedule Misc Keep log files for this number of days 30 0 to keep all log files Minimize to System Tray Y Additional Log Options
24. vaar Gubbs Copy Data II 1 x x User Manual Page I of 23 Gubbs Copy Data II 1 x x Copy Data II 1 x x and earlier User Manual Gubbs Inc 265 Blue Spruce Circle Alpharetta G 30005 P 770 573 0169 F 508 453 1338 gubbs gubbsinc com www gubbsinc com Version 2 0 April 16 2013 G GubbsInc WebSite GubbsInc GubbsInc03 files CopyDatall_UserManual_002 doc vaar Gubbs Copy Data II 1 x x User Manual Page 2 of 23 Table of Contents Section Page Number 1 ABSTRACT Ne 4 2 PROPOSED e na a A a A A EEEE EENES 5 3 GUBBS INC COPYDATA II SOFTWARE SOLUTION ssssssssessseseessssssenesessseuenessessseenesesesssenenesesssesenesseosssenenesessseseneseessesss 6 4 COPY DATA ITOPERATION aa a a a aa RIERA AR ESA EEES 7 4 1 INCLUDED DIRECTORIES TARE 8 4 2 EXCLUDED DIRECTORIES TABLE ccccccscsssessecececnecssessecesecuenseecseececusssseececesuecuesseecesecseuseessecesecuegunessecesseuegusesceeessenagaseeseees 10 4 3 ACTON TV Penitencia 10 4 4 VENDOR ACTIONS Kai ansees 12 4 5 FILE EXCLUSIONS TAB krans a gerne du fres aiii 14 4 6 SCHEDULE Tee 4 7 MISC TAB ccccececeseeeeeeees 4 8 Top LEVEL BUTTONS 5 COMMAND LINE SWITCHES sasdscccsssscacesscdesscsscscasscevdosescescsasscessssccccsacesccusicsccdssoncssivacdedsseacasbccueasbecdsssiescanesssccssscceseevee 20 5 1 SIN oS WHICH TTS 20 5 2 DOAUTO SWITCH ee er 20 5 3 ES A KE NR EE A MESSE NES GP NE techs 20 5 4 SLD SWITCH rennende dades 20 6 SEEL ee SE NS
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