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Pollinator Data Portal

1. Commenn mes Countries Datasets Beebeomyia palbosa pa Pe p Desa Beebeomyia senilis ee on an di es oe as wie mo Dc we do ee ao o woe Common names No common names matching bee Countries Belgium interpreted fram Beernem Belgium Datasets Figure 17 Search Results page IABIN PTN Pollinator Data Portal lt http pollinators iabin net portal gt User Manual and Training Guide 25 Search results in the Scientific Names group are listed by genus and records for species names in that genus Click on a linked genus name scientific name or common name in the Common Names group to view the Genus overview or the Species overview page Section 4 1 1 for that species The Genus and Species overview pages include information about all registered data providers and datasets that contain data for the selected genus or species Click on the name of a country in the Countries group to view the Country overview page Section 4 2 1 IABIN PTN Pollinator Data Portal lt http pollinators iabin net portal gt User Manual and Training Guide 26
2. Geospatial Consortium services This map only shows records with coordinates 131 records from a total of 742 records This shows only records from the IABIN network and may not property represent the total distribution of Borrniurs atratus b View al ocurruncos of Barres ofratus within the vwewed aria EGON 4 e bp et PA LE 21 S 39 W 10 C a Resources providing data for Map Dataset Cole o Entomol gica Paulo Nogueira Neto 18 VSP Codo o Entomoal gue Pes Jesus Santiago Moure Hymonopters Cole o de Abelhas do Museu de Ci ncias e Tecnologia da PUCRS o o de Entomologia do Leboratono de Boloa Vegetal Figure 5 Species taxonomy overview page e g Bombus atratus The Occurrence Overview map is interactive Use the arrow buttons located on each of the four edges of the map the zoom e button in the top right corner of the map and the rectangular bounding box that appears when the mouse is hovered over the map to select and zoom in on regions on the map ONLINE TUTORIAL For more detailed information about maps in the PDP visit the online tutorial section About Maps in the Portal lt http pollinators iabin net portal tutorial maps gt IABIN PTN Pollinator Data Portal lt http pollinators iabin net portal gt User Manual and Training Guide 13 4 2 Data Sorted By Country Browse for data sorted by country in the Countries area of the PDP The Countries area can be access
3. PDP server After the test has been successfully completed the dataset will be published in the PDP and updates will be harvested and published periodically During this testing period members of the PDP implementation team will communicate regularly with data owners for more details please see the PDD Administrator Manual and Training Guide IABIN PTN Pollinator Data Portal lt http pollinators iabin net portal gt User Manual and Training Guide 10 4 BROWSING FOR DATA The PDP is a sophisticated tool that allows users to browse and search for pollinator data of interest Through the application of a number of different filters records that match specific geographic temporal and taxonomic criteria can be isolated and sorted for display download and further study 4 1 Data Sorted by Species Taxonomy Browse for data sorted by species or taxonomy in the Species area of the PDP The Species area can be accessed by clicking on the Species link in the navigation bar at the top of the Home page Browse for data by clicking on links in the taxonomic tree that is displayed under the heading All Kingdoms or type a scientific name into the Find a scientific name within this classification field and click on the Search button Figure 3 If the user searches for a specific species by scientific name the taxonomic tree will expand to HOME SPECIES COUNTRIES DATASETS OCCURRENCES CONTACTS SETTINGS ABOUT Classification
4. Pollinator Data Portal differs from the GBIF Data Portal in that the layout of the user interface and the harvesting process have been modified to accommodate species interactions data and additional resources for researching and displaying interaction data IABIN PTN Pollinator Data Portal lt http pollinators iabin net portal gt User Manual and Training Guide 5 2 1 Home page To access the Pollinator Data Portal Home page Figure 1 type the URL lt http pollinators iabin net portal gt into the address field of your Internet browser application and press the Enter key on your keyboard we a Explore Species Explore Datasets Explore Countries Find data for a species or other Find data from a data provider Find data on the species recorded tr group of organisms dataset or data network a particular country Species Datasets Countries Information on species and other Information on the data providers Information on the species recordec groups of plants animals fungi and datasets and data networks that in each country including records micro organisms including species share data through IABIN including shared by providers from throughoL occurrence records as well as summary information on datasets the IABIN network classifications and scientific and from data providers common names See data for Brazil Layout design E GBIF Data providers retain all rights to data Figure 1 Data Portal Home
5. all users must read and accept the IABIN Data Use Agreement lt http pollinators iabin net portal terms htm forwardUrl http 3A 2F 2F200 144 189 73 2Fport al 2Fdatasets 2F gt ONLINE TUTORIAL For more detailed information about data use visit the online tutorial section About Using Data from the Portal lt http pollinators iabin net portal tutorial services gt 2 4 Data Sharing Agreement The IABIN Data Sharing Agreement for data owners is available online at lt http pollinators iabin net portal tutorial datasharingagreement gt ONLINE TUTORIAL For more detailed information about data sharing visit the online tutorial section About Sharing Data through the Network lt http pollinators iabin net portal tutorial provider gt IABIN PTN Pollinator Data Portal lt http pollinators iabin net portal gt User Manual and Training Guide 7 3 PUBLISHING DATA THROUGH THE PDP Owners of pollinator specimen and observation data and plant pollinator interaction data are encouraged to publish their data through the PDP Plant pollinator interaction records can be represented by specimen or observation records or by statements in articles published in peer reviewed publications Note Before publishing data and other content through the PDP all data owners must read and accept the Data Sharing Agreement available online at lt http pollinators iabin net portal tutorial datasharingagreement gt 3 1 Require
6. system By facilitating access to and exchange of these data the IABIN PTN will support successful monitoring and management of pollinator populations throughout the Western Hemisphere 2 INTRODUCTION The Pollinator Data Portal PDP lt http pollinators iabin net portal gt allows data owners to publish and standardize digital pollinator observation specimen and interaction data online for scientific research and public access These data are generously made available through the IABIN by a wide range of institutions and organizations from around the world The types of data being shared through the IABIN PTN data portal are 1 Species occurrence records based on specimens and observations information about the occurrence of species at particular times and places pollinators and plants 2 Names and classifications of organisms information on the names both scientific and common used for species and on the classification of those organisms into taxonomic hierarchies 3 Species Interaction records information about interactions among pollinators and plants The PDP was developed based on the project and source code of the Global Biodiversity Information Facility GBIF Data Portal lt http www gbif org gt It uses the JAVA programming language and various OpenSource technologies including SpringFramework Hibernate DisplayTag JFreeChart Tiles Struts Quatz DWR XmlBeans Maven Server and MySql Databases The
7. to Spink CRIA Polnizadores Occurrence overview a r 34 23 41 Beta GBIF Open Geospatial Consortium services viewed aroa 1399W 5095 4504 40 N indexed data Occurrences records indexed 06 044 Number of records shared by provider 68 598 Occurrences with courdimatos 53 641 Occurrences with no geospatial issues 53 641 Number of species 0 Number of taxa J Information Mestre Cole o de abelhas do Dopertamenta de Biologia FECLAP USP How to cite this Splunk CRIA Polinzadores Cole o de Abelhas do Dopartamento de Biologia FECLRAP USP acenssod through Gataset data portal http 200 144 109 73 portal datasets resource 71 2009 12 02 Basis of record Specimen ACCESS point URL http srpollinator cna_org br provider DIGIR php Added to portal Aug 6 2009 Information updated Aug 6 2009 Contacts Name Kole Address Email Telephone Dr Jo o Maria Franco de Camargo Administrateve jmafcama at ffcirp usp br 55 16 602 3013 sloxandnt Marna Technical miarirea at yore ara bir Administrative contact the person to be contacted in all matters regarding scientific data content and usage of a specific dataset or data provider Technical contact the person to be contacted in matters regarding technical availability or resource configuration issues on the sede of the dataset or data provedor Figure 11 Dataset overview page e g Cole o de Abelhas do The Occurrence Overview map is interactiv
8. to be included in search Countries to be included in search Download Spreadsheet of results Darwin core maximum 100 000 Google Earth maximum 50 000 Species in results Create Niche Model Sample results Scientific Institution Collection Catalogue Basis of Nam Dataset Coda Cada Number Dacord Date Coordinates Country B o m b u s B C o le o En to m ol gica Paulo USP CEPANN 6460 Specimen Brazi View Drasmensis Nogueira NetO IE ee Cole o Entomol gica Paulo op CEPANN 6475 Specimen Brazi View Nogueira Neto pale fe C o le Ge o En to m ologica Paulo USP CEPANN 39305 Specimen Brazi View Noqueira Neto dera PR C 0 le o En to m ol gica Paulo USP CEPANN 39456 Specimen Brazi view Nogueira Neto Aii Bambi Cole Gao Entomol gica Paulo USP CEPANN 39457 S pec imen Brazi y i ew Nogueira Neto Figure 14 Sample results 4 4 2 Occurrence Details Page The Occurrence details page includes an Actions box Interaction area detailed information about individual occurrence records including the Dataset Taxonomy Geospatial coordinates and a Google map service that displays the location of the occurrence if the occurrence record is georeferenced Figure 15 The Actions box allows users to Find more records for the selected species Retrieve the original record from the data provider in XML format View taxonomic information and classification and Send Feedback about the dataset to the data provider The Interaction area displa
9. Page The Home page of the PDP includes descriptions a navigation bar and links to the main functional areas where users can access data sorted by species country dataset occurrences and on pollinator and pollination experts or contacts The Settings and About links in the navigation bar on the Home page include viewing and language settings and more information about the developers of the PDP 2 2 Settings Click on the Settings link in the navigation bar on the Home page to choose the appropriate option for your computer screen resolution and choose the display language English or Portuguese Note The preferred language options available in the PDP only affect text on the interface Text contained in records published through the PDP will be displayed in its original language IABIN PTN Pollinator Data Portal lt http pollinators iabin net portal gt User Manual and Training Guide 6 2 2 1 Browser Compatibility The standard layout for the PDP has been optimized for screen sizes of 1024 x 768 or larger If you are using a smaller display we recommend that you visit the Settings page lt http iabinptn pcs usp br portaldev settings htm gt and select the Smaller display recommended for displays 800x600 and larger option The Pollinator Data Portal is best viewed using Mozilla Firefox 3 0 Opera 9 0 or Internet Explorer 7 0 or later 2 3 Data Use Agreement Before accessing data and other content published through the PDP
10. Use the arrow buttons located on each of the four E A edges of the map the zoom e button in the top right corner of the map and the rectangular bounding box that appears when the mouse is hovered over the map to select and zoom in on regions on the map ONLINE TUTORIAL For more detailed information about maps in the PDP visit the online tutorial section About Maps in the Portal lt http pollinators iabin net portal tutorial maps gt 4 3 Data Sorted By Data Provider and Dataset The Datasets area of the PDP can be accessed by clicking on the Datasets link in the navigation bar at the top of the Home page An alphabetical list of data providers and datasets is displayed in the Datasets area along with the number of Georeferenced Occurrence records Taxa and Species records published by each data provider or in each dataset Figure 8 IABIN PTN Pollinator Data Portal lt http pollinators iabin net portal gt User Manual and Training Guide 15 Click on a letter in the alphabetical list at the top of the page to display a list of data providers and datasets whose names start with that letter Click on a data provider or dataset name to view more information about the selected data provider Data Provider overview page Section 4 3 1 or dataset Dataset overview Page Section 4 3 2 x au pd aa HOME SPECIES COUNTRIES DATASETS OCCURRENCES CONTACTS SETTINGS ABOUT Datasets Rc C Data Providers O
11. a according to The Inter American Biodiversity Information Network IABIN Data Portal Classification based on Catalogue of Life Annual Checklist with provisional additions from specimen and observation data resources Find a scientific name within this classification All Kingdoms Kingdom Animalia see overview page Kingdom Archaea see overview page Kingdom Bacteria see overview page Kingdom Chromista see overview page Kingdom Fungi see overview page Kingdom Plantae see overview page Kingdom Protozoa see overview page Kingdom Viruses see overview page Figure 3 Species Classification page display a hyperlinked taxonomic tree for the species Figure 4 A gt see overview page link corresponds with each level in the taxonomic tree Click on the gt see overview page link to view more information on a Species taxonomy overview page Section 0 Note Many of the pages in the PDP include an Actions box at the top of the page This Actions box contains links that allow the user to View and Explore the data in different ways Figure 4 The Actions box also includes a link to a Feedback form that can be used to send feedback to the Data Owner about the selected record or dataset IABIN PTN Pollinator Data Portal lt http pollinators iabin net portal gt User Manual and Training Guide 11 Actions for Species Bombus atratus Franklin 1913 view Information about Bombus atratus Explore Occurrenc
12. aasereanaseea 23 Figure 16 Species record details page Interaction area ccccccsssececesseccccescceeeeseceeeeeeceeeeueeeesauseses 24 US BSAC Te UNS PACO asia AB SS GUS O O 25 IABIN PTN Pollinator Data Portal lt http pollinators iabin net portal gt User Manual and Training Guide 3 1 BACKGROUND 1 1 About this Manual This manual provides an introduction to the Pollinator Data Portal PDP developed by the Pollinators Thematic Network PTN of the Inter American Biodiversity Information Network IABIN It describes the main features of the PDP user interface and includes instructions on how to prepare and publish digital specimen observation and interaction data through the PDP Additional detailed user interface instructions and examples are available in an online tutorial Links to specific sections of the online tutorial are included throughout this manual 1 2 Inter American Biodiversity Information Network IABIN The Inter American Biodiversity Information Network IABIN is a forum to foster technical collaboration and coordination among countries of the Americas in collection sharing and use of biodiversity information relevant to decision making on natural resources management and conservation and education to promote sustainable development in the region Goals 1 Build up an infrastructure for biodiversity information exchange 2 Strengthen technical capacity to exchange biodiversity information and expe
13. ate status Coordinate issues and Protected Area Note If the user chooses the Bounding box option from the Geospatial subgroup in the first drop list an interactive map will display on which they can draw a bounding box that is used as a search filter Datasets Data provider Dataset Name and Host country Other Details Occurrence date Year range Year Month Institute code Collection code Catalogue number Basis of Record and Image URL Note The Geospatial subgroup of criteria available from the first drop list in the Add search filter area includes two options for selecting countries and protected areas These options will be used in the future to integrate the Pollinator Data Portal with other IABIN thematic networks After choosing search criteria or search filters click on the Add Filter button In the example in Figure 13 the search criteria Scientific name is Bombus atratus or Scientific name is Bombus brasiliensis and Country is Brazil has been added to the Your Current Search area Multiple filters can be added to the Your Current Search area and they can also be removed from that area by clicking on the minus signs When ready click on the Search button to apply the filters Occurrence search P Please add filters and click Search to perform a search for occurrences records Specify more filters to narrow your search to get more accurate results for the species area or time period that is o
14. cccccccsssssssesseeceecccccccscceeeeseeeeeeeesseeeeeecececessseeeeeseuuaeeennseeeeeess 11 Figure 4 Species Classification page Expanded taxonomy e g Bombus atratus sa 12 Figure 5 Species taxonomy overview page e g Bombus atratus scccccccsssseccceceeeecceeeaeeeeeeeeeneees 13 Figure 6 Data Sorted By Country List of Countries ccccceeecccceeseccceesececceescceceeseceeseneceeeaeseeesaeneess 14 Figure 7 Country overview page e g Brazil ccccccesscccccsseccccesseccceesececeuececceesecessueceseueeceeseneeeessuneess 15 Figure 8 List of Data Providers and Datasets cccccccssseccccsseccceesececeesecccceescceseuecesseneceesenesessugeees 16 Figure 9 Data Provider overview page e g SpLink CRIA Polinizadores ccceeeccceesecceeeeseceeeeeeees 17 Figure 10 Data Provider overview page e g Catalogue of Life 2009 Annual Checklist 18 Figure 11 Dataset overview page e g Cole o de Abelhas do Departamento de Biologia CECERP USD ars cere ee cet ects nc nce O coe TEA E A T 19 Figure 12 Occurrence search page e g Bombus brasiliensis ccccsecccccesccccceesecceaeseceeeeecceeauseceeauneees 20 Figure 13 Occurrence search page Add search filter Your Current search 21 Fal US amplie SS CHES sos rain is nasais adia das i siutanesasecasesedamnraausa EEEE 22 Figure 15 Occurrence Details page e g Bombus brasiliensis teeeeeeeereneeereraaeeerea
15. ccurrences Georeferenced Occurrences Georeferenced Tone Species 17 295 16 287 8 493 7 629 170 314 159 294 66 644 53 641 26 18 960 4 229 508 344 24 326 24 201 565 336 9 532 9 513 132 75 18 091 18 031 97 49 Figure 8 List of Data Providers and Datasets ONLINE TUTORIAL For a more detailed description and examples of data sorted by Dataset visit the online tutorial section About Finding information about a dataset lt http pollinators iabin net portal tutorial dataset gt 4 3 1 Data Provider Overview Page For data providers that publish datasets that contain georeferenced records the Data Provider overview page includes an Actions box Occurrence Overview map list of Indexed Data including Event Logs Section 4 3 3 and Indexing History descriptive information about the data provider and a list of other datasets published by the data provider Figure 10 Click on the name of a dataset in the list of datasets to view a Dataset overview page Section 4 3 2 IABIN PTN Pollinator Data Portal lt http ollinators iabin net portal gt User Manual and Training Guide 16 Data Provider SpLink CRIA Polinizadores Actions for SpLink CRIA Polinizadores Explore Occurrences Download Darwin Core records One degree cell density overlay for Google Earth Occurrence overview 180 180 Count one degree cell 65 55 180 180 This map only sh
16. ck Thank you for taking the time to provide feedback which is encouraged to improve data quality please be aware that there may be some delay before feedback is addressed Feedback relating to http pollinators iabin net portal species browse taxon 19221217qs Bombus atratus Feedback type Feedback relating to a scientific name or classification Data provider Catalogue of Life 2009 Annual Checklist Dataset ITIS World Bee Checklist Scientific name Bombus atratus Your name Your email address Feedback Submit feedback Figure 2 Feedback form e g Feedback about taxonomy of Bombus atratus 3 2 3 Dataset Mapping Data owners will need to map the fields of their pollinator dataset to the fields of the PDD Detailed instructions on how to do this are available in the PDD Administrator Manual In addition to mapping the fields of their dataset to those of the PDP data owners must prepare their dataset for publishing by defining which fields will be made available through the PDP and configuring the system to index them correctly Detailed instructions on how to do this are available in the PDP Administrator Manual and Training Guide 3 3 Testing and Data Harvesting Data owners should contact Pedro Luiz Pizzigatti Corr a pedro correa usp br in order to test the harvesting and publishing of their data in the PDP During this test the fields in the dataset that were selected for publishing will be copied to the
17. d Infrastructure In order to publish digital data through the PDP data owners will need to have access to a local cyberinfrastructure with Internet access and the ability to host their database including access to an Internet server http that will be available to the PDP for periodical data harvesting If you do not have the cyberinfrastructure or ability to host your dataset please contact Antonio Mauro Saraiva Saraiva usp br to arrange an alternative hosting solution 3 2 Dataset Preparation 3 2 1 Digitizing Data If your data is not available in digital format use the freely available Pollinator Data Digitizer available online at lt http pollinators iabin net digitizer gt or another software application to digitize specimen observation and plant pollinator species interaction data The Pollinator Data Digitizer was also developed by the IABIN PTN Instructions for downloading and operating the Pollinator Data Digitizer PDD are available in the PDD Administrator Manual and Training Guide Examples of other specimen and observation data digitizing software applications include the Integrated Publishing Toolkit IPT made available by GBIF and the Specify application made available by the University of Kansas USA 3 2 2 Data Quality The IABIN PTN will publish datasets from individuals and organizations in the PDP if the dataset and or data owners meet certain standards for data quality Datasets should be reviewed by data owne
18. dated The IABIN PTN recognizes that valid taxonomic authorities for many species of pollinators may not be available but recommends the Integrated Taxonomic Information System ITIS lt http www itis gov gt as a taxonomic authority ONLINE TUTORIAL For a more detailed description of the treatment of taxonomy in the PDP visit the online tutorial section About Scientific names and classification in the Portal lt http pollinators iabin net portal tutorial dataset gt Georeferences Data owners are required to check the geographic coordinates in their datasets to ensure that species occurrences based on specimen and observation records are valid Recognized standards for georeferencing and geographic coordinates should be used Error Detection and Reporting An advantage of publishing pollinator specimen and observation data through the PDP is that it becomes available for peer review increasing the probability that errors will be discovered At times users of data accessed through the PDP may identify errors in records The Data Sorted By Species Species overview and Dataset overview pages each include a link to a Feedback form that can be used to send comments and corrections back to data owners This service will help to improve the quality of data available through the PDP for data owners and future users IABIN PTN Pollinator Data Portal lt http pollinators iabin net portal gt User Manual and Training Guide 9 Feedba
19. e Use the arrow buttons located on each of the four RA edges of the map the zoom e button in the top right corner of the map and the rectangular Departamento de Biologia FFCLRP USP IABIN PTN Pollinator Data Portal lt http pollinators iabin net portal gt User Manual and Training Guide 19 bounding box that appears when the mouse is hovered over the map to select and zoom in on regions on the map ONLINE TUTORIAL For more detailed information about maps in the PDP visit the online tutorial section About Maps in the Portal lt http pollinators iabin net portal tutorial maps gt 4 3 3 Dataset Event Logs Dataset event logs can be accessed by clicking on the View event logs for dataset name link on the Dataset overview page Section 4 3 2 Dataset event logs provide a list of the events that have occurred in relation to the selected dataset including harvesting events These logs can be downloaded by clicking on the Download these logs link in the gray Log console area 4 4 Data Sorted by Occurrence Much of the data shared through the PDP is georeferenced so it can be displayed on maps This makes the data amenable to a vast array of analyses and therefore useful to many sectors of society The Occurrences area or Occurrence search page of the PDP can be accessed by clicking on Occurrences in the navigation bar at the top of the Home page The Occurrence search page consists of two areas the Add search
20. ecklist gt Information Name Website Description Address Email Telephone Added to portal Information updated Datasets 44 118 378 6466 Aug 4 2009 4ug 4 2009 gt A World Catalogue of Centipedes Chilopoda for the Web AlgaeBase Aphid Species File Bacteriology Insight Orienting System BioSystematic Database of World Diptera Figure 10 Data Provider overview page e g Catalogue of Life 2009 Annual Checklist 4 3 2 Dataset Overview Page The Dataset overview page includes an Actions box Occurrence Overview map list of Indexed Data including Event Logs and Indexing History descriptive information about the dataset and Contacts and addresses for those responsible for the dataset The Actions box allows users to Explore List Download and Send Feedback about the dataset to the data provider For datasets that do not contain georeferenced occurrence data the Dataset overview page displays the Occurrence Overview map area with the message No georeferenced records currently available IABIN PTN Pollinator Data Portal lt http pollinators iabin net portal gt User Manual and Training Guide 18 Dataset Cole o de Abelhas do Departamento de Biologia FFCLRP USP A provided by Splunk CRIA Polinizadores Actions for Cole o de Abelhas do Departamento de Biologia FFCLRP USP Explore List Download Semad Occurrences Names and classification Foodback
21. ed by clicking on the Countries link in the navigation bar at the top of the Home page An alphabetical list of countries is displayed along with the number of Georeferenced Occurrence records and Species records available from data owners in each country Figure 6 Click on a letter in the alphabetical list at the top of the page to display a list of countries whose names start with that letter Click on a country name to view more information on a Country Overview page Section 4 2 1 about the data available for species found in that country or from data owners located in that country gt aj pe i E HOME SPECIES COUNTRIES DATASETS OCCURRENCES CONTACTS SETTINGS ABOUT Countries f j ABCDEFGHIIKLMNOPQRSTUVWY Z gt gt A Country Occurrences Georeferenced Species Afghanistan 0 0 0 9 0 American Samoa O 0 O ME Angola 27 1 Anguilla Antarctica J i Argentina 711 176 Armenia are ES Aruba OinNnin oo on ao od ait i To 5 q m w 5 co wn Figure 6 Data Sorted By Country List of Countries ONLINE TUTORIAL For a more detailed description and examples of data sorted by Country visit the online tutorial section About Finding information about a country lt http pollinators iabin net portal tutorial country gt 4 2 1 Country Overview Page The Country overview page includes an Actions box an Occurrence Overview map and a list of Resources providi
22. es of Bombus atratus Classifications of Bombus atratus Send GJ Feedback to Catalogue of Life 2009 Annual Checklist on the classification of Bombus atratus Find a scientific name within the classification from ITIS World Bee Checklist All Highest Taxa Kingdom Animalia see overview page amp Phylum Arthropoda see overview page Class Insecta see overview page Order Hymenoptera see overview page Superfamily Apoidea Family Apidae see overview page Genus Bombus see overview page gt Species Bombus atratus see overview page Figure 4 Species Classification page Expanded taxonomy e g Bombus atratus ONLINE TUTORIAL For a more detailed description and examples of data sorted by Species visit the online tutorial section About Finding information about a species lt http pollinators iabin net portal tutorial species gt For a more detailed description of the treatment of taxonomy in the PDP visit the online tutorial section About Scientific names and classification in the Portal lt http pollinators iabin net portal tutorial dataset gt 4 1 1 Species taxonomy Overview Page The Species taxonomy overview page includes an Actions box a Names and Classification area an Occurrence Overview map and a list of Resources providing data for Map Figure 5 The Actions box and other links on the overview page allow users to Explore List and Download data associated with the selected species or taxonomic gr
23. f interest Add search filter Your current search Scientific name vj is Bombus brasiliensis Ciitoro eon ho ramara Av ctlicbing am riiters con be removed oY CHOCKIT Gy Of the minus signs Enter a scientific name and click Add Filter Scientific name is Bombus atratus amp or is Bombus brasiliensis This filter will return any records that have a matching name given for the identification of the organism regardless of how the organism is classified Country is Brazil Figure 13 Occurrence search page Add search filter Your Current search IABIN PTN Pollinator Data Portal lt http pollinators iabin net portal gt User Manual and Training Guide 21 Search results are displayed in the lower half of the Occurrence search page The search results display includes an Actions box and a Sample results area Figure 14 The Actions box includes links that allow users to View the results as a table or on a map Specify data providers datasets and countries to be included in the search Download the results in spreadsheet Darwin core Google Earth or Species in results formats and Create a niche model Details about each record in the Sample results area can be viewed by clicking on the View link on the right hand end of each record This search matches over 1 000 occurrence records Actions View Matching records as table Matching records on map Specify Data providers to be included in search Datasets
24. filter area and the Your Current Search area Figure 12 The Add search filter area is described below The Your Current Search area displays your current search criteria after you have defined them in the Add search filter area Occurrence search Please add filters and click Search to perform a search for occurrences records Specify more filters to narrow your search to get more accurate results for the species area or time period that is of interest Add search filter Your current search Add Filter Your current search is empty Scientific name v is v Bombus bra Bombus braccatus Bombus brachycephalus Enter a scientific name and click Add Filt Sombus branickii Bombus brasiliensis This filter will return any records that ha ation of the Example searches organism regardless of how the organism is classified p Observations of Strix aluco in Poland Observations of Puma concolor in pn North America Figure 12 Occurrence search page e g Bombus brasiliensis IABIN PTN Pollinator Data Portal lt http pollinators iabin net portal gt User Manual and Training Guide 20 4 4 1 Add search filter Search for occurrence data using the Add search filter section on the Occurrence search page Search criteria in the first drop list include Taxonomy Scientific name Common name Classification and Type Status Geospatial Country Region Bounding Box Latitude Longitude Altitude Depth Coordin
25. labin Inter American Biodiversity Information Network Pollinators Thematic Network PTN The Pollinator Information Network of the Americas Pollinator Data Portal User Manual and Training Guide Version 1 0 Editors Pedro Luiz Pizzigatti Corr a Paulo Venancio Lopes Elizabeth Sellers Ant nio Mauro Saraiva Cassandra Harrison Laurie Davies Adams Date June 2010 PARTNERSH i gt Sb TIS Ue oB abn OAE nformati Herwark 1 Laboratory of Agricultural Automation Polytechnic School University of Sao Paulo lt http www laa pcs poli usp br gt United States Geological Survey USGS National Biological Information Infrastructure NBII lt http www nbii gov gt The Pollinator Partnership P2 lt http www pollinator org gt 1 TABLE OF CONTENTS BA C KOROUND acao ir sea idas a ET E 1 1 About this Manua lessenreeks anita EEEn 1 2 Inter American Biodiversity Information Network IABIN 1 3 IABIN Pollinators Thematic Network IABIN PTN ccccccssssseceeeeeeseeeeeeeeeees INTRODUCIMO Nossas sacia nao pass E E senasacnes sovasmctmecaosenaracn 2 1 HOME DALO srein RAR RO ERR E ASPIRE RR E E 2 2 ET EIS A con thaanees De 2 3 Data Use Agreement ae ee dia ne US ae tee rere een renee 2 4 Data Sharing Agreement sedscvdcsescencccsvsentesadctecssavindsesscbedueievaedanebeeisesoexinocessues PUBLISHING DATA THROUGH THE PDP sscssscsscssccsscnsccsccssssss
26. ng data for Map Figure 7 The Actions box and other links on the overview page allow users to Explore List and Download data associated with the selected country IABIN PTN Pollinator Data Portal lt http pollinators iabin net portal gt User Manual and Training Guide 14 Country Brazil of m A e Sout America Actions for Brazil Explore Occurrences Species recorded in Brazil List Datasets with occurrences in Brazil Download 16 degroe coll density ovortay for Google Earth Placemarks for Google Earth limit 10 000 Darwin Core records Darwin Core records for data from providers in Brazil Metadata for data providers in Braz Occurrence overview y Bears GRIF Open Geaspatial Consortium services This map only shows ret ords with coordinates 157 998 records from 3 total of 205 047 records here are 157 905 occurrences withes the viewed arna 94 W 340S 14 W 6 N View all occurrences in Brazil within the viewed arta 94 W 34 S 14 W OPN Resources providing data for Map show hide Dataset Count Cole o de abelhas do Departamento de Biologia FFCLRPAISP s 143 Cole o de Abelhas do Museu de Ci ncias Tecnologia tha PUCRS 3 it gt 4 229 Cole o de Entomologia do Laborat rio de Biologia Vegetal Ea Cola o Entomol gica do Depto de Sistem tica a Ecologia 1 e nai 9 512 View 4 more Gatasets Figure 7 Country overview page e g Brazil The Occurrence Overview map is interactive
27. oup Note The Names and Classification area of the Species taxonomy overview page includes a link to a Feedback form that can be used to send feedback to the data owner about the selected species IABIN PTN Pollinator Data Portal lt http pollinators iabin net portal gt User Manual and Training Guide 12 Species Bormbus atratus Franklin 1913 A oKingdorm Animalia Phyluen Arthropoda wo Class Insecta s rder Hymenoptera sSsperfamily Apoidea wFamily Apidae atratus Ganis Samius Species Bomaus Actions for Bombus atratus Explore Occurrences 742 records Names and classification List Countnes with occurrences Datasets with occurrences Download Darwin Core records One deoree cell density overlay for Google Earth Placemarks for Google Earth limit 10 000 Names and classification According to Catalogue of Life 2009 Annual Checklist ITIS World Bee Checklist Name Sombus atratus Frankin 1913 Classification Kingdom Arnmala Phylum Arthropoda Chess Insecta Order Hymenoptera Supertamdy Apoios XF arnety Apidae Genus Bombus Species Bombus atratus Status Accepted name Record ITS 714864 edermtrisar Record WPL http www ales gov serviet SinglePpt SinglehptTsearch lopic TSNB lt earch value 714864 Review dati 31 Sep 2008 Feedback JF Foodback ti Catalogue of Life 2009 Annual Checklist on the classibeation of Ecvrrines atratus Franklin 1913 Occurrence overview Seta GBIF Open
28. ows records with coordinates 161 929 records from a total of 195 860 records It includes records from all datasets shared by this data provider Indexed data Datasets 8 Occurrences records indexed 195 860 Occurrences with coordinates 161 929 Information Name SpLink CRIA Polinizadores Description Provedor de dados de Polinizadores do CRIA SpLink Datasets Figure 9 Data Provider overview page e g SpLink CRIA Polinizadores The Occurrence Overview map is interactive Use the arrow buttons located on each of the four edges of the map the zoom button in the top right corner of the map and the rectangular bounding box that appears when the mouse is hovered over the map to select and zoom in on regions on the map ONLINE TUTORIAL For more detailed information about maps in the PDP visit the online tutorial section About Maps in the Portal lt http pollinators iabin net portal tutorial maps gt For data providers that publish datasets that do not contain georeferenced records the Data Provider overview page only includes descriptive information about the data provider and a list of IABIN PTN Pollinator Data Portal lt http pollinators iabin net portal gt User Manual and Training Guide 17 other datasets published by the data provider Figure 10 Click on the name of a dataset in the list of datasets to view a Dataset overview page Section 4 3 2 Data Provider Catalogue of Life 2009 Annual Ch
29. rs for common problems such as spelling errors in scientific and vernacular names and invalid georeference data Data Providers and Datasets Although it is the intent of the IABIN PTN to provide free and unrestricted assistance to data owners IABIN PTN Pollinator Data Portal lt http pollinators iabin net portal gt User Manual and Training Guide 8 who wish to share their pollinator data the consortium recognizes the need to ensure a level of quality for both data owners and users of the PDP The IABIN PTN will accept datasets contributed by recognized organizations such as museums universities and research organizations Datasets will also be accepted from individual data owners if the data owner can demonstrate the validity of the dataset and their expertise in collecting curating the dataset to the satisfaction of the IABIN PTN Consortium Each data owner will be evaluated on a case by case basis Accepted evidence for an individual data owner s expertise includes a degree or other certification in the biological computer natural or library sciences conferred by a recognized tertiary or other educational institution and or evidence of experience including at least three professional references who can attest to the applicant s expertise experience in relation to the dataset Taxonomic Authority Data owners are encouraged to select a taxonomic authority against which the scientific and vernacular names in their dataset can be vali
30. rtise across political linguistic and institutional boundaries 3 Provide access to biodiversity information useful to decision makers to improve biodiversity conservation 4 Enhance capacity to store use and distribute scientifically sound and update biodiversity information 5 Produce or adapt information products for decision makers tools for decision making so they formulate effective environmental management policies and promote sustainable development in the region 1 3 IABIN Pollinators Thematic Network IABIN PTN The IABIN Pollinators Thematic Network IABIN PTN is one of six thematic networks of the IABIN It is developing a Western Hemisphere network for access to and exchange of pollinator information Bees bats and hummingbirds are some of the most important pollinators of wild and cultivated plants in the Western Hemisphere Pollinators provide an essential ecological service to wild and cultivated plants However we do not yet have the basic knowledge required to design a comprehensive action plan to monitor manage and conserve wild pollinators IABIN PTN Pollinator Data Portal lt http pollinators iabin net portal gt User Manual and Training Guide 4 We need to know how many pollinating species there are their names where they live and what plant species they pollinate Without this information we will not be able to link the scattered biological ecological and agricultural data in an efficient retrieval
31. s Specimen 1 2001 S o Paulo S o Paulo Instituto de Bioci ncias Universidade de S o Paulo IB USP 23 5475 46 6361 Sante SPto21 7 y l ae Wawa SE SP 077 sch S o Paulo Pod Mogi das y Sales p a AoE NS ee K ETA A Cruzes Birtiba Mirim AS E ama Figure 15 Occurrence Details page e g Bombus brasiliensis ollinators iabin net portal gt User Manual and Training Guide 23 4 5 Plant Pollinator Species Interaction Data The Occurrence details page 4 4 2 for each record contains an Interaction area that displays plant pollinator species interaction records associated with the selected taxonomic group or species In the example in Figure 16 the interaction record indicates that the species Cephalotrigona capitata has interaction Visits with the species Impatiens balsamina The Impatiens balsamina species is represented by a specimen record which is indicated by specimen being displayed after the scientific name Actions Find Records of Cenhalotrigona capitata from Webbee s specimens data provider Retrieve Retrieve original record from data provider View View information for Cephalotrigona capitata Classification of Cephalotrigona capitata according to Webbee s specimens data provider Send Feedback to Webbee Specimens Interaction Visit Impatiens balsamina specimen Figure 16 Species record details page Interaction area 4 6 Experts Pollina
32. sccsscessascees 3 1 Reguired VETS Ur NC CUS esera 3 2 Dataset Preparation siuinsccudantorntaniwuetedankonneotumaenedentoontoniateaedantisnensdturindactontones 3 3 Testing and Data Harvesting siccsscsdccssvevsidestvearinuisbudecesceedcendeeniasasceneseisesviaceteend BROWSING FOR DATA wsscsitdessceccnsncsetedcnsenseccececcanuds stpdeuseeeceerocndedcsastcsawececcesnecns 4 1 Data Sorted by Species TaxONOMY cccccccccsssseccccceseeccceeueeeeceeseeeeeeceesenenes 4 2 Data Sorted BY County nieces eeann satedencedavsanseancegeansenurens 4 3 Data Sorted By Data Provider and Dataset c cccccceesceseccenestenseeeeseeeeeeees 4 4 Data Sorted by Occurrence ccsccccesseccceessccecausececeusececseueceeeeesecessuecetsunesss 4 5 Plant Pollinator Species Interaction Data cccccccecccscessecseeeeeeseeseeesseeeneess 4 6 Experts Pollinator and Pollination cccccccessccccccesseecceeeeeeeceeeeeeeeeeeeseeeees SEARCHING FOR DATA jissasnagaisss adro verearmsesscue sauce a AEON Ea 5 1 SGC HI PRES UIC eeo E E E E E A A IABIN PTN Pollinator Data Portal lt http pollinators iabin net portal gt User Manual and Training Guide 2 TABLE OF FIGURES Figure 1 Data Portal Home Pa eG viccedescicsedscerseivect n a bend dada Dos ind nao E sediada anda nos assinar 6 Figure 2 Feedback form e g Feedback about taxonomy of Bombus ATIATUS ccccceeseccceeeseeeeeeseees 10 Figure 3 Species Classification page
33. tor and Pollination The Experts link in the navigation bar at the top of the Home page provides access to the IABIN PTN Pollinator and Pollination Contacts Database lt http pollinators iabin net contacts html gt an online database of people located in or with knowledge of pollinators and pollination in South Central and North America and the Caribbean The Pollinator and Pollination Contacts Database will open in a new Internet browser window IABIN PTN Pollinator Data Portal lt http pollinators iabin net portal gt User Manual and Training Guide 24 5 SEARCHING FOR DATA The Pollinator Data Portal PDP includes a Search function that indexes data by Scientific Name Common Name Country and Dataset The Search box is available in the top right hand corner of each page of the PDP Users can search the PDP by typing keywords into this box and pressing the Enter key on their keyboard or by clicking on the Search link The PDP will search the Scientific Names Common Names Country names and Datasets for a match including words that contain the search keyword s e g A search for bee will retrieve results for Webbee 5 1 Search Results The Search Results page displays results grouped according to records whose Scientific names Common names Countries or Datasets matched the search term s Figure 17 Each result is linked to records and datasets that contain the search term s Search Results for bee Fa AE
34. ys any known species interaction records associated with the selected occurrence record It will be empty if there are no interaction records available The Google map service map is interactive Figure 15 Use the arrow LJ buttons located in the left corner of the map to pan up or down and left or right The and buttons to zoom or out on regions on the map Click on the Map Satellite or Hybrid buttons to view different map formats ONLINE TUTORIAL For more detailed information about maps in the PDP visit the online tutorial section About Maps in the Portal lt http pollinators iabin net portal tutorial maps gt IABIN PTN Pollinator Data Portal lt http pollinators iabin net portal gt User Manual and Training Guide 22 asi Occurrence Details USP CEPANN 27970 Bombus brasiliensis Actions Find Records of Bombus brasiliensis from Cole o Entomol gica Paulo Nogueira Neto IB USP Interaction Dataset Data Provider Dataset Institution code Collection code Catalogue No Basis of record Collector name Date collected Taxonomy Scientific name IABIN classification Kingdom Phylum Class Order Family Genus Species Geospatial Continent Country County State Province Locality Latitude Longitude Coordinate precision Altitude Depth aap SUSU IABIN PTN Pollinator Data Portal lt http SPLink CRIA USP CEPANN 27970 S interpreted a

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