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        USER MANUAL ISAR6 and DAQ4 System on the R/V MIRAI Version
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1.        Table of Contents     March 16  2014 ISAR6  amp  DAQ4 User Manual v5 21    9 START    9 1 DAQ ISAR File Structure    Note  The file structure is now different than it was in previous software  In particular     ISAR is now  ISAR4  and   isardaq is now  sw   Keep this in mind in the examples below           The    ISAR4    folder is shown in Figure 5   The top folders for data collection are    data  contains all data sets  A  data set    is all the data files and setup files for a particular data  collection run     sw  contains all software for the DAQ4     tools  contains the perl libraries  and copies of important files such as the bashrc file     9 2 The START Command  Enter the START command after all edits to the setup file are complete  Only enter START    to create a new time series folder with the current copy of the setup file     Definition of a    Data Set     A data set is a block of observations with the same setup files and  with the a common scientific purpose  A data set is defined by time  A data set is initialized by  the  START  command  When the START command is entered the following folder is created    ISAR4 data data_20140317T194516Z  When the STARTCAL command is entered a calibration data set is created  ISAR4 data datacal_20140317T194516Z     Table of Contents     March 16  2014 ISAR6  amp  DAQ4 User Manual v5 22    9 3 G  Begin data collection         G  COMMAND   START DATA COLLECTION       EI mI   AIRAN isardaat        mp PROGRAM G  s  VERS
2.       O USER  1  GG P 2 G I     In this example the current screen is OFUSER   O USER General user screen  Use for testing   1  GG P Reserved for GPS data collection   2  G I Reserved for ISAR data collection       MOVE TO SCREEN 2  ISAR DATA COLLECTION    Enter  a and 2 to go to screen 2    You will see the screen names at the bottom of the window    0  USER 1 GG P  2 G 1    If the DAQ is collecting data you will see   gt  gt 20140312T131925Z 1060 0 0  0 3  1 5  325  824    650  0 0  82   gt  gt 20140312T131926Z 1061 0 0  0 3  1 5  325  826    650  0 0  82   gt  gt 20140312T131927Z 1061 0 0  0 3  1 5  325  820    650  0 1  82    New lines each 2 3 seconds  These are the DAQ data collection lines  Described in the manual       MOVE TO SCREEN 0  CHECK ISAR OUTPUT    The command    ISARraw    shows the end of the raw data file and updates as new data come in from ISAR       ISAR4 sw    a O Screen label will read  O USER  1  GG P 2 G I    ISAR4 sw   ISARraw   2014 03 12 12 31 46   ISAR5  20140312T122506Z    303 7 0 06 10200  2014 03 12 12 31 48   ISAR5  20140312T122508Z    303 7 0 06 10200   C     ISAR4 sw      End with  C       DETACH FROM SCREEN SESSION    Detach from the session so it is available to other users     ISAR4 sw    ad Enter control a then d for detach      Table of Contents     March 16  2014 ISAR6  amp  DAQ4 User Manual v5 59    J Example Session 3     Start Data collection with Screen    1  START AT THE DAQ FOLDER From the Mac  PC  terminal window or remotely w
3.     C Kermit 8 0 212 Dev 26  20 Dec 2006  for Mac OS X 10 5 7        Quit kermit with the    quit    command    The TeXShop package is useful for upgrading documentation    TeXShop can be downloaded and installed from TexShop Home Page    Additional packages are needed  Create a folder in the Unix home directory     cd        called      tex      Copy the RMR Co folders texstyles and texinput into this folder  These are available from RMR Co     The statistics and plotting package called    R    is used in some presentation and processing software   The program can be downloaded from the R Homepage     Install the Tcl Tk package     March 16  2014 ISAR6  amp  DAQ4 User Manual v5 32    Sharing    Use the MacPorts to install the current version   From the Terminal window enter    sudo port install tchsh8 5     Check the install by entering    tclsh    and you should see the prompt           Enter   C  to quit     Certain system sharing packages must be configured  From under the Apple symbol opne    System Pref   erences    and then  under    Internet  amp  Wireless    open the    Sharing    folder     Set the Computer Name to    isar6      Turn    Screen Sharing    on          Under Screen Sharing go to    Computer Settings        word      and set the password to    isar06          select    VNC viewers may control screen with pass     Also set    Allow access for     to    All users     Next  under    Sharing     turn    Remote Login    on and    Allow access for     set to 
4.     Seiren          Logout    e Press the power control button to turn power  ON or OFF              NOTE  The ISAR has an internal power backup so the    Cycle Power    function is not useful to  reboot ISAR  Instead  to reboot ISAR     e Press the    Power Off    button   e Wait three minutes     e Press the    Power On    button     7 2 ISAR DC Power Control    The ISAR DC power passes through a DC relay  Adma 4017  so the operator can cycle power  to the ISAR alone without effecting other devices           ISAR 1sardaq s    lt  ISAR  isardan       ISAR  1sardaq S   SETUP FILE  Users7 TWTCO715AR  1s0rdoq setup sub6  txt EXISTS  485 network 128 28 8 12 100902 CONNECTEO   Isar Power is OFF    user Figure 14  Recycle DC power to ISAR       1SAR 1sar  sq S   S TSAR 1sardaq      1SAR  isardaa                Table of Contents     March 16  2014 ISAR6  amp  DAQ4 User Manual v5 20    8 Ping and Confirm Operation    Before beginning data collection a series of tests are used to assur that all of the different  modules are connected and operational     8 1 Ping commands    We    ping    each component to be sure the ethernet links are all working         gt  gt 20110806T171625Z  875 1 0  1 8  5 1  155  599 2812 2812 2813 2121     ISAR isardaq   ping 139 166 246 43 S    d  PING 139 166 246 43  139 166 246 43   56 data bytes Figure 15  Pinging a module on the network     64 bytes from 139 166 246 43  icmp_seq 0 ttl 64 time 8 098 ms 4    64 bytes from 139 166 246 43  icmp seq 1 ttl 64 
5.    All users     Install the open source Mac terminal program Zterm    We use the UC232A USB to RS232 driver  This is a popular and common piece of essential hardware     The UC232A requires a driver which can be found on line  The driver comes as a     rar    file and requires  a rar converter  Download the application UnRarX online      Table of Contents        March 16  2014 ISAR6  amp  DAQ4 User Manual v5 33  C DAQ Setup File  NO  TAG DESCRIPTION  16 SST INTERPOLATION CORRECTION Interpolation value from calibration   17 CALIBRATION OFFSET Offset value from calibration   21 SCAN VIEW ANGLES Scan angles  BB1  BB2  Sky  Sea  These must agree with the ISAR  configuration file   43 SERIAL HUB URL Hub IP number on the LAN   84 GPS HUB COM NUMBER The hub port number  1 5  plus 10000 for the GPS serial input     Actually  unless the ISAR position on the ship is moved  only lines 16  amp  17 need to be adjusted as a result of  calibration      Users rmr swmain apps ISAR4 isardaq setup su06 txt Page 1 of 5  Saved  11 08 12 900 40 15 Printed For  MIke                THIS FILE  su06 txt  110809  0343Z  I TE EXPERIMENT SETUP               This section identifies the experiment and the experiment parameters  The  instrument location   and orientation on its platform are identified   EXPERIMENT NAME  CINDY  GEOGRAPHIC LOCATION  MIRAI INDIAN OCEAN  PLATFORM NAME  MIRAI  LOCATION ON PLATFORM  FOREMAST  HEIGHT ABOVE SEA LEVEL  m   20 APPROX  SHIP TYPE  M V  SHIP NAME  MIRAI  CRUISE NAME  K
6.    NN  Bw    NNN N  ON AU    N  oi    30  31  32  33  34  35  36  37  38  39  40  41  42  43  44              THHHHHHHHE ISAR configuration file for isar linux v2 x x code base  HHHHHHHHH General format    comment followed by 1 line data  KEYWORD DATA   HHHHHHHHH DO NOT DELETE ANY LINES FROM THIS FILE       HHHHHHHHH   HHHHHHHHH 2011 06 08  W Wimmer Version 2 0 0  Revision 1       THHHHHHHHHHHHHHHHHHE Contact information       HHHHHHHHHHHHHHH       iHHHE Title for this deployment configuration stating purpose of this isarconf      file  str 255      TITLE ISAR6 OPERATION ON MIRAI  110809        ICF author name  e mail and telephone number  str 255     AUTHOR M  Reynolds   EMAIL michael rmrco com   PHONE  1 206 701 6659        Last Edit date of this icf file yyyy mm dd  str 15    EDITDATE 2011 08 10       LOGFILE_PATH  data    THHHHHHHHHHHHHHHHHHE General instrument configuration        HHHHHHHH            ISAR 5D serial number  int    ISARID 6    HHH Date and details of last ISAR 5D instrument calibration date  str 255    CALDATE Expected bath on Mirai 110809   iHHHE   USER FLAGS  1 condition set  O condition not set      LOG_DATA   log to flashcard  CALC_SST   compute SSTskin  START_DIAGN    diagnostic data at boot  RAW PNI   output onboard compass data      RAW GPS   output onboard GPS data  MEAN REC   output  IS5MR data record     CAL REC   output  I5CAL record  XTEMP   run BB crossing temperature routine     it ROLL PITCH STOP   shutdown ISAR if roll or pitch limits excee
7.   AVGGPS is ready     gt  gt 20140312T165556Z 1030 0 0  0 3  1 4  145       124 316  4 0  294   gt  gt NEXT SAMPLE  dt_samp 20140312 170000  dt1 20140312  165500   dt2 20140312  170500   gt  gt 20140312T165556Z 1025 0 0  0 3  1 4  145       124 316  4 0  294   gt  gt 20140312T165557Z 1025 0 0  0 3  1 4  145       124 316  4 0  294    7  GPS SCREEN AND GPS TIME SERIES     If it is desirable  a special GPS data collection program is available  GPS data are collected as part of the  ISAR record  but sometimes it is useful to collect GPS data as a standalone time series      Enter  a and 1 to go to screen 1      ISAR4 sw   P  SETUP FILE  Users rmrco ISAR4 sw setup su06 txt EXISTS    March 16  2014 ISAR6  amp  DAQ4 User Manual v5 61    SERIAL HUB URL  128 20 8 12   GPS PORT NUMBER  10003   Connected to hub   set host 128 20 8 12 10003   GPS CONNECTED    GPRMC  165649 A 3519 2193 N 13939 0040 E 000 2 082 4 120314 007 0 Wx61   GPRMC 165654 A 3519 2193 N 13939 0040 E 000 1 082 4 120314 007  0  W GE   GPRMC  165659  A 3519 2193 N 13939 0040 E 000 0 082 4 120314 007 0 W  62     ISAR4 sw       End this connection with  N and q as with the I command     8   GG  BEGIN GPS DATA COLLECTION      ISAR4 sw   GG    RUN PROGRAM Z_gps ex  VERSION 2  EDITDATE 120720    ARM REMOVED   SETUP FILE FROM CMD LINE   Users rmrco ISAR4 data data_20140311T050619Z su_20140311T050619Z txi  SETUP FILE  Users rmrco ISAR4 data data_20140311T050619Z su_20140311T050619Z txt EXISTS  DATAPATH    Users rmrco ISAR4 da
8.   HINTBB_EMISSIVITY   internal BB emissivity  SELFHEAT CORR   self heating      correction on off     SEAVIEW_POS 3   SKYVIEW POS 2   EMISSIVITY 0 991635   RMR_CORR 1 0   VREF 0 0   RREF 10000 0   INTBB_EMISIVITY 0 9993   SELFHEAT_CORR 0   iHi Heated  Active  blackbody  1 or 2  Normally 2 unless changed by user   HOTBB 2       THHHHHHHHHHHHHHHHHHE External RS485 configuration        HHHHHHHH       iHHHE Up to 8 External RS485 devices can be sequentially defined      RS485 n NAME   label for device  RS485_ n ADDRESS   RS485 address       RS485 n COMMAND   device specific read command     HRS485_1 NAME RhoPD D1102 CM11 Solarimeter   HRS485_1 ADDRESS 4   HRS485_1 COMMAND  4RD        RS485_2 NAME RhoPD D1102 PIR Eppley  HRS485_2 ADDRESS T  SRSA85 2 COMMAND  TRD       SRSA85 3 NAME RhoPD D5132 PIR Eppley  HRS485_3_ADDRESS U  HRS485_3_COMMAND  URB        RS485_4 NAME RhoPD D5112 PAR  HRS485_4 ADDRESS A     Users rmr swmain apps ISAR4 isardaq setup cfg isarconf_run txt Page 3 of 7          Saved  11 08 21 13 24 42 Printed For  MIke  87   RS485_4 COMMAND  ARD  88 d  89 HRS485_5_NAME AD_Converter  90 HRS485_5_ADDRESS 01  91  RS485_5 COMMAND  01  92  HHHHHHHHHHHHHHHHHHHE PNI compass configuration     H  H HHHHHHHH  93    94 itt PNI sensor pitch warning limit  deg   float   95 PITCH_LIMIT 20 0  96 itt PNI sensor roll warning limit  deg   float   97 ROLL_LIMIT 20 0  98 iit PNI compass serial number  str 80    99 PNI_SN 9824  v2 82   100    101 IHHHHHHHHHHHHHHHHHHE ORG configuration     H
9.  0 05K intercahngable thermistor with      standard YSI calibration    iHHHE BB1 Thermistor 1 calibration coeficients  Range 268 16   gt 338 16K   1 0 not      Uused double 108      BB1_THERM1_COEFF 1 0271173e 3  2 3947051e 4    1 5532990e 7   1 0  1 0  1 0  1 0  1 0  1 0  1 0        BB1 thermistor 2 serial number  str 80     BB1 THERM2 SN ISAR TH11 11032        BB1 Thermistor 2 description  str 128     BBI THERM2 DESC YSI NASA grade 46041 0 05K intercahngable thermistor with      standard YSI calibration    iHHHE BB1 Thermistor 2 calibration coeficients  Range 268 16   gt 338 16K   1 0 not      used double 10      BB1_THERM2_COEFF 1 0271173e 3  2 3947051e 4   1 5532990e 7  1 0  1 0  1 0  1 0  1 0  1 0  1 0        BB1 thermistor 3 serial number  str 80    BB1_THERM3_SN ISAR TH12 11032        BB1 Thermistor 3 description  str 128     BB1_THERM3_DESC YSI NASA grade 46041 0 05K intercahngable thermistor with      standard YSI calibration    iHHHE BB1 Thermistor 3 calibration coeficients  Range 268 16   gt 338 16K   1 0 not      Uused double 108      BB1_THERM3_COEFF 1 0271173e 3  2 3947051e 4   1 5532990e 7  1 0  1 0  1 0  1 0  1 0  1 0  1 0       THHHHHHHHHHHHHHHHHHHHHHHHHE Black body  2 configuration         H HHHHHHHHHH           BB2 serial number  int    BB2_SN 12        BB2 description  str 128       Users rmr swmain apps ISAR4 isardaq setup cfg isarconf_run txt Page 6 of 7  Saved  11 08 21 13 24 42 Printed For  MIke          213  214  215  216  217    218  219  220  221  2
10.  145  146  147  148  149  150  151  152  153  154  155  156  157  158  159  160  161  162  163  164  165  166  167  168  169  170  171  172  173  174  175  176  177  178  179  180  181  182  183  184  185  186  187  188  189  190           CAL EMIS  O   field use  compute e from angle    1   calibration mode  CALIBRATION EMISSIVITY  0    SEA EMISSIVITY  UNCORRECTED   0 9870975  BLACK BODY EMISSIVITY   1 0  APERATURE EMISSIVITY   0 95       Determined during calibration  Adjusts the BB slope   CALIBRATION FILE  i04cal 101013 apl       set Vref to 0 and the values from the 2 adc12 7 will be used   BB THERM VREF  0  BB TEMP Ref R  10000    Resistances from testing with precision resistances  See notes 090909   BB RESISTORS  10000  10000  10000  10000  10000  10000    it Rref for wintemp and tt8temp  APPERATURE THERM REF RESISTOR  10000    REF VOLTAGE FOR 12 BIT ADC  4 0928   it Rref2 for four ysi apperature therms      ISAR 01  9995 9984 9997 9997      ISAR 04  10000 10000 10000 10000   APPERATURE THERMS REF RESISTANCES  10000 10000 10000 10000    RAW FILE RECOGNITION STRING  not case sensitive  recognize a raw data file     ISAR5       RAW    MAXIMUM NUMBER OF AVERAGES  Set to 1e20 for final run    1e20   MIN SAMPLES FOR AVG  2   SELF HEAT FLAG  1         SBD SETUP                        The sbd is connected to port 10003   If the RAD is not connected enter  oi  0 Simulate  1000x connected  SBD HUB COM NUMBER  0  SBD MODEL NUMBER  NAL_9601 D  The serial number is written on the
11.  15    16  16  16  17  17  17    18  18  19  19  19  19  20    20  21    22    March 16  2014 ISAR6  amp  DAQ4 User Manual v5    10 2 Compress archive the datas  lees a suse o e A oe Res  Robo Ren  10 3 lear data Tolder o uos ex e RERO RE m m UB RR A A A oe AR E Reed a    11 Calibration  11 1    Calibration System Dessripbiof acu acus vow xo Ie door deese cm ae ORE a    A PARTS    D    User Interface PC     Setup   Bi Techician Requirements  oca a shop A aR a Gee E ced A Rd ed  H 2 Pile strutture   oae dae eae Rh be bbe Rho o momo eee hha awa eee eb Pen  BS  Steps to Setupa New PO i e mab k iaces PAR Ee Oe aE HE RR Re wets    C DAQ Setup File  D ISAR Configuration File  E BASHRC Unix Setup File  F Miscellaneous Problems and Procedures  F 1 Shutter Gear Runs Off the End of the Belt     G Software Overview  H Example Session 1     Evaluate data collection  I Example Session 2     Using a screen session  J Example Session 2     Using a screen session    K Glossary    23  23    25    29  29  29  30    32    39    48    53  53    54    56    57    58    61    March 16  2014 ISAR6  amp  DAQ4 User Manual v5 4    1 System Description    The Infrared Sea Surface Temperature Autonomous Radiometer  ISAR   description on page 4  was developed at  Southampton Oceanographic Center and Brookhaven National Laboratory approximately ten years ago  Donlon  et al   2008  for the purpose of providing data for satellite validation and for algorithm development    This manual describes an installat
12.  D avgbath pl   D avggps pl      avgisar pl      avgtcm pl      ChangeCalSetup pl  D ChangeSetup pl    Gex     Cc bath ex   D Cc casots ex   D Gcex    13    Shared Folder    getip pl  Name   getsetupinfo pl  e  IsarPwr ex    Kai data  gt  DU kis Shared Folder      LastData pl Name   gt  tools C    E tal Ce    1 Set  plsar pl     PrepirecalRun pl   al MakeSetupArchive pl  E le Sal aga    a2 InsertSetupLine pl   gt     wick b E  bash   gt  E    proc cal   ta cfg    Z su06 v6 txt   gt  L3 simulate    suOG txt     TailCurrentAvg pi W  supert     TarDataSet       term to bath ex      term to gps ex      term to isar ex      term to sbd ex  tmp   BB tmpavgfile  tmpdatpath     2 gps ex             Figure 9  Setup file     The setup file controls almost all of the DAQ real time operation and real time data processing  View the file  with the Unix  less  program      ISAR4 sw   less  setup su06 txt    A typical setup file can be found in the Appendix  A setup record line has a    tag    followed by  a colon     followed by the datum for that line  Thus a line such as    SST INTERPOLATION CORRECTION  1 0033    has a tag     SST INTERPOLATION CORRECTION     and the datum  1 0033   Exact line  numbers are not important  The software searches for the tag string    Note  Software searches for the tag string only  Therefore there is no penalty for adding  comment lines in the file to help describe the data  The setup file shown in appendix C has  many comment lines and insertions     5 1 Ed
13.  DAQ4 system delivered to JAMSTEC    Isar instrument provided by SOES    3 thermistors  YSI46xxx  in each BB    Gold mirror    Thies Clima  modified by SOES    Lemo pigtail  length 3m  main plug  GPS  Ethernet  RS232   Lemo pigtail  length 3m  rain sensor plug   Uninteruptable circuit    Complete data and control interface manufactured by RMR co   Weatherproof enclosure mounted with isar   Garman GPS17X  NMEA GPRMC  10 sec rate   Provided with the GPS  Modified for 3 wire rs232    Schedule 40 PVC nipple    Polycarbonate  440x389x170 mm  twist latches  non metallic hinges  VJ 1614 ALUMINUM MOUNTING PLATE  MP1614A    316 SS   316 SS   316 SS   316 SS DIN rails  300 mm  300 mm  160 mm long    Three outlet power strip  International plug style  AC line filter  250 VAC  50 60 Hz   Serial to Ethernet  four RS232 and one RS485   RS485 relay module  RS485 controlled    Five port Ethernet switch   DC power module  15 V  0 67 A output   DC power module  24 V  2 5A output   Web enabled switch  one port    Din rail contact module  Din rail contact module    4 1 42  4 1 43  4 1 44  4 1 45  4 1 46  4 1 47  4 1 48  4 1 49  4 1 50    4 1 60  4 1 61  4 1 62  4 1 63  4 1 64    4 1 70  4 1 71  4 1 72  4 1 73  4 1 75    4 1 80    4 2  4 2 1    4 3  4 3 1  4 3 2    4 3 10  4 3 12  4 3 14    4 3 16  4 3 18  4 3 20  4 3 22  4 3 28    4 3 30    4 4    TERMINAL DIN ORANGE  3   TERMINAL DIN GREEN  3   TERMINAL DIN YELLOW  3   TERMINAL DIN BLUE  4   TERMINAL  DIN  GROUND  2   END CLAMPS  DIN  7   DISCO
14.  Do this if you are unsure if you have the current  config file in the DAQ PC     Use scp or fetch  section 6 3  to copy isarconf cfg from ISAR to the PC  Change the  name of the file on the PC to isarconf_run txt     2  Edit isarconf on the DAQ PC  Use VI or BBEdit   3  Copy isarconf run cfg to ISAR     4  Replace isarconf  cfg with the new version     cp isarconf_run txt isarconf cfg         swmain apps ISAR4 isardaq setup cfg      swmain apps ISAR4 isardaq setup cfg    cp isarconf_run txt isarconf cfg    swmain apps ISAR4 isardag setup cfg                     March 16  2014 ISAR6  amp  DAQ4 User Manual v5 18    6 5 2 Edit CFG file in ISAR     Edit the isarconf cfg file directly in the ISAR  Use ssh to connect to ISAR and move to the  folder with the config file  We use the text editor    vi    in this example     1  Move in ISAR to the cfg folder   2  Make a copy of the current cfg file     cp isarconf cfg isarconf_run txt  3  Edit using vi     vi isarconf_run txt    ES      After edit  close the ssh session     al      Copy the edited config file to the PC  Use fetch or scp to copy     6 6 An Alternate method of direct edit     A single command can be used to change a single line in the configuration file       A single line perl command will make the desired change to a single line   Generic form   perl  pi  e  s        1 5 g if   line title   filename    This example   perl  pi  e  s        1 5 g if   ORG MEAN LIMIT   isarconf run txt      Check using grep   grep  ORG M
15.  O  TUE G ex  Process control  avggps pl gpsavg txt  gpsraw txt    SOFTWARE    SIMULATION MODE  Figure 17  Software block dia     gpsraw txt gram     SimSbd pl SimGps pl    i G ex  Setup Simi Process control  avggps pl gpsavg txt    gpsraw txt    L JC     PROCESS FILE        Table of Contents     March 16  2014 ISAR6  amp  DAQ4 User Manual v5    SOFTWARE    CALIBRATION MODE    Bath Tref Readout    Kermit Kermit  Comms I O Comms I O    isarhdr txt    isaravg txt    Gc ex  EStup caldo Process control  avgbath pl bathavg txt    bathhdr txt  bath_raw txt isar_raw txt    SOFTWARE    CALIBRATION SIMULATION MODE    isarcal txt    bath_simulator pl isar_simulator pl    bathcal txt    isarhdr txt  i Gc ex  se Process control  avgbath pl bathavg txt    bathhdr txt    sw  colibration  110407       Figure 18  Calibration Software  block diagram     56    March 16  2014 ISAR6  amp  DAQ4 User Manual v5 57    H Example Session 1     Evaluate data collection    Example session  Evaluate the Isar Daq data processing     1  MOVE TO THE ISAR FOLDER  7   gtdaq    ISAR4 sw      Note  The new version is called  ISARA     2  IS A SCREEN RUNNING     ISAR4 sw   screen  1s  There is a screen on   80100  ttys002 miraikansoku   Detached   1 Socket in  var folders MA MAiD5aNGGzGBy5      Tmp   screen       TSAR4 sw      Yes  there is a screen running  Note  Do NOT enter the new screen command  Screen  if a screen exists     3  WHAT IS CURRENT PC UTC TIME     ISAR4 sw   date  u   Wed Mar 12 12 21 43 UTC 20
16.  alias STARTCAL  cd  isarpath     PrepareCalRun pl  export RUNSETUPCALFILE Y  cat tm  53  54   RUN CALLS   55 alias G  cd  isarpath    G ex  RUNSETUPFILE    56 alias Gc  cd fisarpath    Gc ex  RUNSETUPCALFILE   57  58   EXPORT   59 alias Export  cd  MYDATAPATH  perl  MYDAQPATH TarDataSet pl    60  61   PROCESS CALIBRATION   62 ttalias ProcCal  cd  isarpath proc cal    0 ProcCal sh  export PROCCALPATH  cat tmp  63  64   TEST CALLS   65 alias I  cd  isarpath     term to isar ex  SETUPFILE    66 alias Ic  cd  isarpath    term to isar ex  SETUPCALFILE   67 alias N  cd  isarpath     term to nal ex  SETUPFILE    68 alias P  cd  isarpath     term to gps ex  SETUPFILE    69 alias B  cd  isarpath     term to bath ex  SETUPCALFILE     70   71 alias iBoot  Safari http   192 168 1 2    72 alias IsarOn  cd  isarpath    IsarPwr ex  Setup ON   73 alias IsarOff  cd  isarpath    IsarPwr ex  Setup OFF     74 alias IsarCycle  cd  isarpath    IsarPwr ex  Setup CYCLE   75 alias IsarState  cd  isarpath    IsarPwr ex  Setup state   76  77 alias PingHub  ping  IPHUB    78 alias PingiBoot  ping  IPIBOOT   79 alias PingCal  ping IPCAL    80 alias PingIsar  ping  IPISAR   81 alias PingMe  ping  IPPC    82  83 Hzzzzzzzzzzzzzzzczzzzczzc zzL zczz  zz2 zzz  zz zzz  zz2 zz2z  zz2 zcz2z  zz2  zz  zz   z      84  85  86   RUN APPS   87 alias Safari  open  a Safari    88 alias Bbedit  open  a  Applications BBEdit app   89 alias me  Bbedit    90 alias Finder  open  a Finder app  91 alias Finder4  open  a Finder
17.  app  isarpath   92  93 HH HELP FILES   94 alias mh  less   swmain Unix myhelp myhelp_ general   95  96   EDIT HELP FILES           Users rmr swmain apps ISAR4 isardaq setup bash bashrc_air txt Page 3 of 3  Saved  11 08 12 900 40 15 Printed For  MIke          97 alias rcedit  me    bashrc   98  99   UTILITIES  100 alias ll  ls  1tF   101 alias shutdn  expect   swmain expect misc Shutdown ex   102 alias reboot  expect   swmain expect misc Reboot ex   103 alias Top  top  u  s5   104 alias Ps  ps  axrf   more   105  106  107   NOTE FILES  108  notepath   Volumes mike6440 RMRCO NOTES     109  alias isar6notes  cd  Volumes mike6440 RMRCO PRODUCTS isar6 system  echo           110  111          March 16  2014    ISAR6  amp  DAQ4 User Manual v5    53     Table of Contents     March 16  2014 ISAR6  amp  DAQ4 User Manual v5 54    F Miscellaneous Problems and Procedures    F 1 Shutter Gear Runs Off the End of the Belt     There is a gap between the shutter belt and the rubber stopper  Sometimes  by accident  the shutter is run too  far and the gear moves into the gap  Then the gear spins     Solution  When the gear is turning  move the shutter by hand so it engages the belt  Actually this should  not happen in normal operation  In test mode it is possible to run the motor until this occurs      Table of Contents     March 16  2014 ISAR6  amp  DAQ4 User Manual v5 55    G Software Overview    SOFTWARE    OPERATION MODE    GPS  SBD Modem    Kermit Kermit Kermit  Comms I O Comms I O Comms I
18.  circuit board   UMiami unit   300034012200640  SBD SERIAL NUMBER  0       If you want to simulate SBD modem the say  YES      For standard processing with a real modem say  NO   SBD SIMULATE FLAG  NO     Users rmr swmain apps ISAR4 isardaq setup su06 txt  Saved  11 08 12 00 40 15    Page 5 of 5  Printed For  MIke          191  192  193  194  195  196  197  198  199  200  201  202  203  204  205  206  207  208          Set the SBD data TX time     When the time since the last tx  gt  sbdsecs we transmit     SBD TX TIME SECS  1700    Time in secs to wait before recording no data   SBD error messages at this rate    Typically 3600   NO DATA WAIT TIME  3600    SBD COMMENTS    Iridium SBD unit for DAQ4   There is no modem in daq4 at this time   END    END SETUP FILE    March 16  2014    ISAR6  amp  DAQ4 User Manual v5    39     Table of Contents     March 16  2014 ISAR   4 DAQ4 User Manual v5    D ISAR Configuration File    At startup the ISAR reads an internal configuration file named    isar software isarconf cfg   which is refered to here as the  config  file    IMPORTANT OPERATIONAL LINES       NO  TAG DESCRIPTION  52 SCAN POS3 Set the Sky view angle  35  and the number of sample to take   10     53 SCAN POSA Set the Sea view view angle  145  and the number of sample to  take  40     40     Users rmr swmain apps ISAR4 isardaq setup cfg isarconf_run txt Page 1 of 7  Saved  11 08 21 13 24 42 Printed For  MIke          KA OG VD DJ qu un    A A  Wn     HB  AB    HAHAHAHA  HOA Ou 
19.  server address    Gateway  128 20 1 240 Gateway address        Note  The IP numbers and ports are defined in the setup file       ISARA sw setup su06 txt     Table of Contents     March 16  2014 ISAR6  amp  DAQ4 User Manual v5 10    BC    10     Data Collection Quick Start      Check all connections  ISAR is in its frame  Rain sensor is connected  DAQ power and ethernet are    connected Check all connections are in place       AC on  Turn on AC power to the DAQ  Turn on the iBoot   Ref 7 1      Ping the hub  Use the PingHub command to confirm the DAQ hub is active   Ref 8 1      Ping Isar  Use the Pinglsar command to confirm the Isar is active       If the pings are NOT good then    o Double check all connections   o Cycle the power with the   Boot command and the web page controls  Ref 7 1        Check ISAR Serial  Enter the I command and be sure isar data lines are coming in correctly   Ref 8 2      Check GPS  Enter the P command and check the GPS data records are coming properly   Ref 8 3        Edit setup file  su06  Double check and edit the setup file   Ref 5 1      o edsu to edit key lines   o EDsu to edit the complete setup file using BBEdit   Note  Edit the setup file only as necessary       Create the data set folder  Finally  if all checks out enter the START command to create the data set    folder   Ref 9      Begin data collection  Enter the G command to begin data collection   Ref 9 3       Table of Contents     March 16  2014 ISAR    amp  DAQ4 User Manual v5 
20.  setup file to it  There is no need  to enter START unless the setup file has been edited   EDsu command   There is no harm in entering  START several times     March 16  2014 ISAR6  amp  DAQ4 User Manual v5 60      ISAR4 sw   START   HOME    Users rmrco   LIB    Users rmrco ISAR4 tools   DATA    Users rmrco ISAR4 data   MAIN DATA FOLDER   Users rmrco ISAR4 data   RUN DATA FOLDER    Users rmrco ISAR4 data data_20140312T165409Z   CURRENT SETUP FILE    Users rmrco ISAR4 sw setup su06 txt   NEW SETUP FILE    Users rmrco ISAR4 data data_20140312T165409Z su_20140312T165409Z txt       ENTER    G    TO BEGIN DATA COLLECTION      ENTER    quit    TO STOP DATA COLLECTION       OR     ENTER   C      Users rmrco ISAR4 data data_20140312T165409Z su_20140312T165409Z txt    ISAR4 sw       6  G   BEGIN DATA COLLECTION  Begin data collection with the G command     RUN PROGRAM G ex  VERSION 8  EDITDATE 140125   G ex arg 0   Users rmrco ISARA4 data data  20140312T165409Z su  20140312T165409Z txt  SETUP FILE  Users rmrco ISAR4 data data_20140312T165409Z su_20140312T165409Z txt EXISTS  DATAPATH    Users rmrco ISAR4 data data_20140312T165409Z   INFO FILE    Users rmrco ISAR4 data data_20140312T165409Z Info06 txt    OPEN ISAR PORT 10001   Launch kermit   OPEN PORT 10001   set host 128 20 8 12 10001   PORT 10001 CONNECTED   AVGISAR is ready    OPEN TCM PORT port  1    OPEN GPS PORT port 10003   Launch kermit   OPEN PORT 10003   set host 128 20 8 12 10003   PORT 10003 CONNECTED   GPS handle   exp22 
21. 1 0       THHHHHHHHHHHHHHHHHHHHHHHHHE Instrument Thermistor configuration  HHHHHHHHHHHHHHHHH HH            Window thermistor serial number  str 80     WINDOW_THERM_SN LOT   04A0423    H HH Window thermistor description  str 128     WINDOW_THERM_DESC Window  YSI NASA grade 46041 0 05K interchangable thermistor      with standard YSI calibration    iHHHE Window thermistor calibration coeficients  Range 268 16   gt 338 16K   1 0 not      Uused double 108      WINDOW_THERM_COEF 1 0271173e 3  2 3947051e 4    1 5532990e 7   1 0  1 0  1 0  1 0  1 0  1 0  1 0        Channel A thermistor serial number  str 80     THERM_A_SN LOT  04A0423        Channel A thermistor description  str 128     THERM A DESC Channel A  YSI NASA grade 46041 0 05K interchangable thermistor with      standard YSI calibration    iHHHE Channel A thermistor calibration coeficients  Range 268 16   gt 338 16K   1 0      not used double 10       Users rmr swmain apps ISAR4 isardaq setup cfg isarconf_run txt Page 7 of 7    Saved     11 08 21 13 24 42 Printed For  MIke          246  247  248    249  250    251  252  253  254  255  256  257  258  259  260  261  262  263  264  265  266  267          THERM_A_COEF 1 0271173e 3  2 3947051e 4       1 5532990e 7  1 0  1 0  1 0  1 0  1 0  1 0  1 0         Channel B thermistor serial number  str 80     THERM B SN LOT 04A0423        Channel B thermistor description  str 128     THERM B DESC THERM A SN Channel B  YSI NASA grade 46041 0 05K interchangable      thermistor with stan
22. 11    4 Preparation to Begin Operation    4 1 Turn ON the PC    The laptop for the DAQ4 is an Apple Mac Air  11     The computer software is written Unix with a BASH shell   The software work well in a Linux  Ubuntu  operating system using a BASH shell    Turn on the power switch  The computer boots the programs and ends as the screen below        di Terminal Shel  dr View Window Melo 4 aginn Tw21362  Q    a    Figure 5  The Unix terminal  screen  light yellow background  here  should be at the home  folder                 a a       al          THE DOCK    Figure 6  The DAQ Mac OS X Dock     The most important programs for general use are  BBEdit Terminal Safari Zterm  from left to right         BBEdit  An excellent text editor with many fea      PT DTI    A     Avo te i  i o Terminal  Opens a new UNix terminal window     o Safari  Internet browser   o Zterm  A serial terminal for RS232 connections              4 2 Sleepless Power Control    Normally the computer goes to sleep when the lid is closed or after a set time  Sleepless is a program that  disables the sleep action   The upper right menu will look approximately like this           BO    4  EJ  Charged  Wed 8 40 09 Q          Figure 7  The upper right side of the task bar   e Move the mouse pointer to the lightbulb on the left end of the menu above     March 16  2014    ISAR6  amp  DAQ4 User Manual v5             Allow sleep  Allow sleep timer               Prevent idle sleep  Prevent idle sleep  display can sleep    
23. 13  5 090  204832  147 48  0 6     ro DO 10624721 18082  wait  v 1 0  32   NULLUM D e  ES G    S   E  ISAR AVG  Miess yyyyMMdd Ken  t pich z  t roll ads emis   Ma ses Hi b      154A STERN  20810624 EIN Za emen  AER 0 ONID OIN  999 427 344  12 41  5  V BOIT  iA  EE E ani  ipaa  201  5 002  30 853                         L  en DIU DET   2075  19   199  Aer  5 098   245 078  2077 27 1998 190A  281     Ven  29     ami  3 080  29  2 140 0   na  1999  2011  5 000  20 813  147 480  7 8     es Tere sevi Tere cesa cime Seri a mem m m cat ms on en                 Data Collection Screen      Table of Contents     March 16  2014 ISAR6  amp  DAQ4 User Manual v5 23    10 Stop data collection  amp  Data Export    10 1 Terminate Data Collection    Stop data collection by entering  C or by entering the command    quit        10 2 Compress archive the data    1  Go to the ISAR folder   gtdaq Goes to the sw folder   cd        Backs up to the ISAR folder     2  Make a copy of the entire ISAR folder including all software and setup   cp  R ISAR4 isaryyyyMMddhhmmss    3  Tar and Zip the entire folder   tar  zcvf isaryyyyMMddhhmmss tar gz  ISARA Makes the archive                 Note  yyyyMMddhhmmss is the assigned time stamp for the archive file  Year yyyy  month MM   day dd  hour hh  minute mm  second ss           10 3 Clear data folder   The entire ISAR folder is archived and compressed and is named      isaryyyyMMddhhmmss tar gz   It is now important to delete all the data folder in order to av
24. 14    ISAR4 sw      4  SET THE TIME   if necessary    Set datetime  tag  set time  set clock      ISAR4 sw   sudo date  u 031212262014 30  Password    Wed Mar 12 12 26 30 UTC 2014     ISAR4 sw      Note  set the time ahead then enter password at the right second  Password is the PC admin password    ia   p       5  IS ISAR SENDING DATA       ISAR4 sw   ISARraw  2014 03 12 12 31 46   ISAR5  20140312T122506Z    303 7 0 06 10200  2014 03 12 12 31 48   ISAR5  20140312T122508Z    303 7 0 06 10200    RS    TSAR4 sw      Data lines from ISAR come each 2 3 sec approximately  End with control c     6  IS DAQ COLLECTING DATA    ISAR4 sw   ISARavg  114 2014 03 12 00 00 00 35 32032      178 2014 03 12 10 40 00 35 32035      179 2014 03 12 10 50 00 35 32034          ISAR4 sw       Table of Contents     March 16  2014 ISAR6  amp  DAQ4 User Manual v5 58    I Example Session 2     Using a screen session    1     START AT THE DAQ FOLDER  From the Mac  PC  terminal window or remotely with SSH  enter gtdaq to go to the ISARA folder     ISAR4 sw        IS A SCREEN RUNNING     First check to see if a screen is running     ISAR4 sw   screen  1s  There is a screen on     80100 ttys002 miraikansoku   Detached   1 Socket in  var folders MA MAiD5aNGGzGBy5      Tmp   screen     ISAR4 sw      Yes  there is a screen running and it is detached       OPEN THE SCREEN SESSION    If yes  re attach the screen with the  r option     ISAR4 sw   screen  r  You will see the screen names at the bottom of the window
25. 22  223  224  225  226  227  228  229  230  231  232  233  234  235  236  237  238  239  240  241  242  243  244    245          BB2_DESC See ISAR BB Configuration doc for history        BB2 thermistor 1 seriall number  str 80     BB2 THERM1 SN ISAR TH04 11032        BB2 Thermistor 1 description  str 128     BB2 THERM1 DESC YSI NASA grade 46041 0 05K intercahngable thermistor with      standard YSI calibration    iHHHE BB2 Thermistor 1 calibration coeficients  Range 268 16   gt 338 16K   1 0 not      used double 10      BB2_THERM1_COEFF 1 0271173e 3  2 3947051e 4    1 5532990e 7   1 0  1 0  1 0  1 0  1 0  1 0  1 0        BB2 thermistor 2 serial number  str 80     BB2 THERM2 SN ISAR TH05 11032        BB2 Thermistor 2 description  str 128     BB2 THERM2 DESC YSI NASA grade 46041 0 05K intercahngable thermistor with      standard YSI calibration    iHHHE BB2 Thermistor 2 calibration coeficients  Range 268 16   gt 338 16K   1 0 not      used double 10      BB2_THERM2_COEFF 1 0271173e 3  2 3947051e 4    1 5532990e 7   1 0  1 0  1 0  1 0  1 0  1 0  1 0        BB2 thermistor 3 serial number  str 80     BB2 THERM3 SN ISAR TH06 11032        BB2 Thermistor 3 description  str 128     BB2_THERM3_DESC YSI NASA grade 46041 0 05K intercahngable thermistor with       standard YSI calibration    iHHHE BB2 Thermistor 3 calibration coeficients Range 268 16   gt 338 16K   1 0 not      used double 1       BB2_THERM3_COEFF 1 0271173e 3  2 3947051e 4    1 5532990e 7   1 0  1 0  1 0  1 0  1 0  1 0  
26. 234 6     Calibration  SST INTERPOLATION CORRECTION   1 0033  CALIBRATION OFFSET  0 1085      Agree with the configuration   cfg  view angles   bb1  bb2  sky  sea   SCAN VIEW ANGLES  280 325 35 145    MINIMUM EXPECTED LATITUDE   90   MAXIMUM EXPECTED LATITUDE  90   HH make longitude in the range 0 360      we expect the ship to be in the range  min max  else missing  MINIMUM EXPECTED LONGITUDE  0   MAXIMUM EXPECTED LONGITUDE  360    COMMENTS   ISAR6 DAQ4 SYSTEM  Calibration i6 cal 110809  END         DATA ACQUISITION PROGRAM PARAMETERS           For testing save data with software  Normally  data can be saved in an archive folder   NOTE  To set this device one can  use a web browser  Go to the current IP  If you don t know the  current IP it is easiest to use a Windows PC and VXComm exe   You need to always know the current IP address    SERIAL HUB URL  128 20 8 12   SERIAL HUB OFFSET  10000         DATA FILES                           Users rmr swmain apps ISAR4 isardaq setup su06 txt Page 2 of 5  Saved  11 08 12 900 40 15 Printed For  MIke          48 Data are written into a subdirectory under the current  49 working directory  Usually this is called  data     50 DATA OUTPUT PATH  data   51 MISSING VALUE   999   52 ISAR RT OUT PATH  data   53  54      TCM SETUP                          55 NOTE  Set the tcm for 9600 baud  1 sec output  NMEA only string   56  HCHDM  310 0  MP5 4R0 1X7 75Y15 11Z251 87T25 6 2D    57   58 Hub number   10004  59  1 if no TCM   60 0 to simulate   
27. 40  141  142  143          GPS COMMENTS  The receiver is the GPS17X by Garmin   END           ADAM 4060 SETUP ON PDS752 HUB                     Adam 4060 is a relay switch that controls power to the Isar   Set the hub address to 10002   485 HUB COM NUMBER  10002         ISAR SETUP                       0 for simulate   10001 connected to hub port x   ISAR HUB COM NUMBER  10001    ISAR AVERAGING TIME  sec   600     Set up a tty port for logging data real time  TTY OUTPUT  YES    Which side is the Isar mounted on  PORT or STARBOARD  tUse this to compute actual viewing angle   PLATFORM SIDE  STARBOARD       0 1      index  Use for calibration case  CALIBRATION VIEW   3    We want to only process certain thermistors   PROCESSING BB1 THERMISTORS  1 2  PROCESSING BB2 THERMISTORS  1 2    ox dE E ISAR CALIBRATION AND INTERNAL PARAMETERS                ISAR SERIAL NUMBER  06    Verbose mode prints out test messages and data   VERBOSE   1  NOT VERBOSE   0    avgisar pl makes a file called data tmp txt   VERBOSE MODE  0    HIF you want to simulate then name a raw data file   SIMULATE FILE  simulate isar txt       Specifics on the Instrument      isarol   01  4832  kt15 filter 15854832 dat  I01V0555 txt     isar04   04  5339  kt15 filter 15855339 dat  I04V0355 txt  KT15 SERIAL NUMBER  10200   KT15 FILTER FILE  kt15 kti15 filter 158510200 txt    MISSING VALUE   999     Users rmr swmain apps ISAR4 isardaq setup su06 txt Page 4 of 5  Saved  11 08 12 900 40 15 Printed For  MIke          144 
28. 61  10004  for daq4    62  TCM HUB COM NUMBER   1   63 TCM MODEL NUMBER  GPS17X   64 TCM SERIAL NUMBER        65 TCM MIN SAMPLES FOR AVG  3   66 TCM AVERAGING TIME  120   67     FIXED POSITION  Under development         68 If HUB   0 then we can specify exact coordinates for a fixed position   69 TCM FIXED PITCH  47 60329   70 TCM FIXED ROLL   122 28797   71 TCM FIXED AZIMUTH  18 1   72  73  TCM COMMENTS   74  We are adding the TCM to the DAQ box   75 END   76  77       GPS SETUP                          78 NOTE  Use the Garmin supplied Windows program to set the 17x for  79 9600 baud  5 sec output  GPRMC only string    80 Hub number      81  1 if no GPS  Use fixed values below   82 0 to simulate a GPS   83  10003  for daq4    84 GPS HUB COM NUMBER  10003   85 GPS MODEL NUMBER  GPS17X   86 GPS SERIAL NUMBER        87 GPS MIN SAMPLES FOR AVG  3   88 GPS AVERAGING TIME  120   89     FIXED POSITION  Under development         90 If HUB   0 then we can specify exact coordinates for a fixed position   91 GPS FIXED LATITUDE  47 60329   92 GPS FIXED LONGITUDE   122 28797   93 Magnetic variation      East   94 GPS FIXED VARIATION  18 1   95           Users rmr swmain apps ISAR4 isardaq setup su06 txt  Saved  11 08 12 00 40 15    Page 3 of 5  Printed For  MIke          96   97   98   99  100  101  102  103  104  105  106  107  108  109  110  111  112  113  114  115  116  117  118  119  120  121  122  123  124  125  126  127  128  129  130  131  132  133  134  135  136  137  138  139  1
29. EAN LIMIT  isarconf run txt      swmain opps ISAR4 1sardaq setup cfg       swmain apps ISAR4 isardaq setup cfg   perl  pi  e  s        1 5 0 if  AORG_MEAN_LIMIT   isarconf run txt    swmain apps TSAR4 isardaq setup cfg        swmain opps ISAR4 1sardaq setup cfg      swmain opps ISAR4 isardaq setup cfa   qgrep  ORG_MEAN_LIMIT  isarconf run txt  ORG_MEAN_LIMIT 1 5       swmain apps ISAR4 1sardaq setup cfg         6 7 Reboot ISAR Operation    1  Quit the SSH connection and return to the DAQ terminal   Enter exit       Quit data collection if necessary  At the DAQ window  enter  c     From the command line     enter IsarOff  See figure 8 1       Wait 10 minutes for battery backup to discharge     CU e Ww N      Enter IsarOn     Table of Contents     March 16  2014 ISAR6  amp  DAQ4 User Manual v5 19    7 Power Control    7 1   Boot AC Power Control       To view this page  you must log in to area H SA H   iBoot G2  on 128 20 8 13 80  Figure 12  iBoot Log Orwindow  Your password will be sent unencrypted  e Enter the command iBoot    e Enter the command Safari http   128 20 8 12  or  e From Safari  enter URL http   128 20 8 12        Password      Remember this password in my keychain    Cancel   Cog In   Ex Name  user  Password  daq4                After entering the Name and Password the main iBoot menu will appear                   Attached to  New   Boot  CCE  Main a S  Expt BS E e Check the Main checkbox     Exp2  Power ON      iBoot       Figure 13  iBoot power control window 
30. HHHHHHHHHH  102    103   H H  Optical rain guage serial number  str 80    104 ORG SN 0508501  105 mn SCTI Optical rain guage description  str 128    106  ORG MODEL Thies 5 4103 20 041  107      Optical rain guage rain voltage threshold below which shutter is closed      float   Lab 1 0  Field  40 054  108 ORG MEAN LIMIT 1 5  109      Optical rain guage rain voltage standard deviation above which shutter is      Closed  float   Lab 1 0  Field   0 002  110 ORG_SD_LIMIT 0 25  111      ORG history  str 128    112  ORG_COMMENT new model  113    114 IHHHHHHHHHHHHHHHHHHE A2 Encoder configuration       H HHHHHHHH  115    116 mp US DIGITAL A2 Encoder serial number  str 80    117 ENCODER SN 21363  118      A2 encoder reference position  float deg   119 ENCODER_REF 0 0  120  mn A2 encoder park angle  normally over lower blackbody   float deg   121 ENCODER PARK 280 0  122 ENCODER BAUD 9600  123 ENCODER RESOLUTION 14400  124    125 HHHHHHHHHHHHHHHHHHHE Optical component configuration HHHHBBBBBBBBHHE  126    127      ISAR 5D mirror serial number  str 80    128 MIRROR SN OFR MR 25 20  2011 05 30   129      ISAR 5D window serial number  str 80    1309 WINDOW_SN CRYSRTAN ZNSE bbar batch 24827  2011 07 22   131    132 HIHHHHHHHHHHHHHHHHHHHHHHHHHE Motor configuration      HHHHHHHHHHHHHH           Users rmr swmain apps ISAR4 isardaq setup cfg isarconf_run txt Page 4 of 7          Saved  11 08 21 13 24 42 Printed For  MIke   133     134 mn ISAR 5D scan drum drive motor and gearbox serial number  
31. ION    POLTDATE 130617   rates    Darwin   Ke arg PE  Very rareo 1948  EVA Oot 2L UM PTUS   4 20  UAR 2T LOS    SETUP FILE  QGRFE rerco ISAA Gate  Gata  282 10824 T EDOETL  bu PEDIATR ann en  DATABATH   erf renne ICAA data data 281 LOTA TLMIDO77     cM OPEN ISAR POAT 192 168 1 3     mm  peus perl s  simalate iyar simulator pl   AVGISAR 14 resty    cies SUN CPS PORT 102  144 2  0  port 8 nteesencesturs  Met pari ap hat   pgn simulator  gl      m  r is rendy     92011942412044427  9 0  1  1 0  e  gt  300   999 2  4 2 14 2 96 17   2  704  1720  4 904  Wei  ep A  7 4  374  Aeigt gei  107900  C1 27011874  206308     3M  MAA DITA 7374  07H  104  104  1701  4 404  30 288 91  2 4  298    Bee  09 2   2974  7976  1998  12   170  4 908  DOOR    ias 221  7 4  271   ng  mg  23H  28 1771  17 03 1798  4 906  38 004  245 321  1 1  ITI       Calibration  Gc     To stop data collection   c or quit lt cr gt              G Command         h    AE DR an FIELD NAMES    STEEN   gt  TOLLOGIATIMASITZ  RR AR             e x Ws  iu  es           e201 1062472845232  698  1 8     20118624T2045257  686  1 8         71 2175  2275  2376  1771  3772  2775   718 2375 2375  2376  1771  172  3778     nen fe seen PPSW Titt KT      BBi        BB2       ae  38 086  144 927   998  38 886   144 927        d  1 0     AVERAGE RECORDS              20110624721 4547  71 0 1  E AA   365  2826  2877  785  1999  1999  2011  5 092  29 011  147 487  6 0  264  Se 10620T2 114862  KEAN 323  _766  2876  2877  2873  1999  1999  20
32. LA  Seb te ISA IPSE o op EG E d wok eR Teese ed OS a as  6 2 Kithe ISAR PTOS  RER e ob Rok A 9 go cm a De ede ee A ande RE eet A  6 3 Exchange Files using Fetch  gt   s sca sese kom oe eoe ee Re ee  G4 ISAR Tools Test Program  439 xo  er Er EE Er DE T ec RUE E endo  65  BAR Configuration  Mile     JsarbonLelE o iois g add a koX dk OR ROW RO POR X Gore EUR do d  6 5 1 Edit CFG file in PC and Move to ISAR o    pui    e     052 Edit CPG nein BAR o f 2 ao be et Bae rada Say a a a ds ees  6 0 An Alternate method al direct edits  sa sore sig aoe A we ee ee e ROO eed n  6 7 Reboot ISAR Operation  lt  eosa s ook ee eae A X 4 e E OR eoe RR a Re ede a ea    7 Power Control  Til iBoot AC Power Control os o s xh be ew eo mex Exo x omo ee we om RUE ded dum oon  1 2  AR DG Power Control cnc E dor  Ree ox Ree e Be tae ls a A LA ee ee GE a    8 Ping and Confirm Operation  Bl  Ping commands 60440  xe R9 AAA RRS REED a  S OS AR RG d  8 2 T    Direct Gonnect to ISAR   lt  sasa s e ea a om EE RR dede de etn  8 amp 3  P    Direct Connect to GPS oon Ro RO xia v ee ee ee i REP Oe A A    9 START  Og DAQ ISAR File SERGIO 20x 9oLoe o9 Row x mo Ro Rog MERA REPS ROSE ROM CR E  03  The START Command ouem dee ob eee Al ERN pee a ee a Late tee me UR A ee  923 G  Begin data Collection    uuu uem o Eu 94e xoxo  Eee UR Y Ed eee AO d    10 Stop data collection  amp  Data Export  10 1 Terminate Data Collection      2 4044 244 ra a a EEN ADR ER RR ee a    10  10  10  11  11    12  12    13  13    14  14  14  14 
33. NNECT  DIN TERMINAL  DISCONNECT END SECTION  JUMPERS  TERMINAL    SCREW  DIN FASTENER  10   WASHER FLAT  10   WASHER  SPLIT LOK  10   NUT  DIN FASTENER  20   MOUNTING CLIP  DIN    RECEPTACLE  ETHERNET  RECEPTACLE POWER   CABLE FEED THROUGH  2 EA   CABLE  AC POWER  PIGTAIL  CABLE  ETHERNET  EXTERNAL    IRIDIUM MODEM  option     UI   USER INTERFACE    COMPUTER  LAPTOP    CI   CAL INTERFACE    BATH  CASOT  CABLE I2    READOUT TEMPERATURE  PROBE  THERMISTOR  CABLE  SERIAL READOUT    HUB  SERIAL TO ETHERNET  CABLE  CAT5  HUB   CABLE  CAT5  COMPUTER  SWITCH  ETHERNET  POWER SUPPLY  24V    DIN RAIL    MOUNTING FRAME    Din rail contact module  Din rail contact module  Din rail contact module  Din rail contact module  Din rail contact module  Din clamp  screw down     Short DIN terminals together     316SS  M4  316SS  M4  316SS  M4  316SS  M4  Din rail mounting clip for terminal strip    Waterproof RJ45 receptacle   Underwater Impulse MCBH 3MP  male pins    Heyco   Liquid Tight Cordgrips Straight Thru  PG Hubs    Molded MCIL 3FS Impulse  1 m short pigtail to spplice onto ships cable   Weatherproof mate for RJ45 receptacle     Computer and network interface components operates the RU   Mac Air laptop  OS X  Unix    Temperature probe  network components   Mates with the CASOTS bath   Water bath  from SOES   Lemo pigtail  length 3m  same as 1 1 3 but no GPS     Hart digital readout    Hart precision probe  RS232 cable  DB9 to pig tail for HUB    Ethernet cable connect hub to switch  Eth
34. Remote Measurements  amp  Research Company  214 Euclid Av    Seattle WA 98122   michael rmrco com       TR1106 v5          USER MANUAL  ISAR6 and DAQ4 System on the R V MIRAI    Version 5  March 2014  Modified for ISAR4 upgrade after March 2014        Left  ISAR6 mounted on the foremast  Right  The DAQ4 remote unit  RU      March 16  2014 ISAR6  amp  DAQ4 User Manual v5    Contents    1 System Description  1 1 General Description of ISAR  lt e o co oiu su ea Aa oO  ee EE E Rec We  1 2  Ram Sensor  PPT  222526 AR A e Mee ae dg  13 The Data Acquisition System  DAQ    o i cca wa e oo Ry Rm yr Red    2 Installation  24 Installation Buggien sucede me   A we 63 Xo 44 3 we ee 40399 x 3253 Go WR wt woo    3 Data Collection Quick Start    4 Preparation to Begin Operation  Zl uen ON me Pacos dex Udo wy al Gem RB RUE E WR PRU ASIE CUR i  A  sleepless Power Control cs  se 4465 254 4 rub RP Rem P db eb he Raw e dos re d  2 3  Set the Ethernet addresses  lai 2 Boke RAH aE EGE ee RU ROS SOEUR A RR  dla  Goto the DAO Polder   423m on enm Rede  ee wae ae OP BRE gee    5 DAQ Setup File     su06 txt  5 1 Editthe DAQ Set  p Hle   uo ono hh a eR e erer e Zar Rm RR eee eG  HLI Ds BBEdE 2225590 oboe cmo X AOD AEN oho oe Ad ee SOR ek Oe og  blc Idas dul A c3 ng RU Se utor Deere EUR 1    9 s  la BUsu      Backup Setup  File sce db a awk ee ee a a veh de    6 Working with the ISAR  D L SSH TO IBAH  222 a e dox a Xd A A A TR de Pe a  6 1 1    To Monitor ISAR Raw Data with SSH    oc s eoe oc sees mms  G
35. a file     e Read the last line of the data file   tail  f fname The display will update each time a  new data string comes in from ISAR     e To exit tail   lt control gt  C    e To exit SSH  exit or sequentially enter   return       and      6 1 2 Set the ISAR IP   This is not necessary unless the installation IP changes   e SSH to ISAR     e nano  etc network interfaces     to edit this configuration file     March 16  2014 ISAR6  amp  DAQ4 User Manual v5 16    e Set the desired IP  and close   e sudo  etc init d networking    e Restart the system to set the new configuration     6 2 Kill the ISAR Program       Enter ps  ax  2  Select the first pid  figure 10 left panel    3  kill the program  right panel                    KILL COMMAND       Xr Ep  ie e patax ii ene m 11 978  E   o repre A  im Si KEN bat oe Confirm with ps command  ann Zb Hp P zen  Ek m 4m Hoen  F   E iem Go  ka ZS  FE F  i  Et E FE  E Kach NOTE  To restart turn the  rn g E  HE     Ep E EE E Eat power off with  Si m EE    Ss Si mc de IsarOff  cr    am m Lm Wait 10 min for UPS  Ss E SS Si uinum ait 10 min for  GEZ   Select top  isar KS Ste to die   mum o m  i ye fast E  mum au note pid  792 here  Huh ami nat renun    SS m SS NAT e emt Then restart with  MA nat ANES asha metet Ma rset DEE aiat O imer unm  mu Ser  Se Le   cr    Ea Lu kill  9 792 lt cr gt  i LY IsarON lt cr  A n Me                Figure 10  Kill the ISAR program     6 3 Exchange Files using Fetch    Use the fetch command to the config file fr
36. able of Contents   Indented Part List   Full Parts Spreadsheet   Test Full Parts Spreadsheet    ISAR6  amp  DAQ4 User Manual v5    26    ISAR6 DAQ4 INDENTED PART LIST 2011 08 15  pn ECCN 123456   ISAR DAQ COMPLETE SYSTEM   ISAR6 SYSTEM   1 ISAR  AH BLACK BODY ASSEMBLY  sel THERMISTORS  1 1 2 HEATER  IES BLACK CONE  1 1 4 PLASTIC SLEEVE  TES CONNECTOR  3 2 SHUTTER ASSEMBLY  1 2 1 SHUTTER MOTOR  122 SHUTTER GEAR  Es DRIVE BELT  1 2 4 SHUTTER SWITCH ASSEMBLY  1 2 4 1 SWITCH BLOCK  1 2 4 1 SWITCH  HALL EFFECT  1 2 4 2 MAGNETS  1 3 SCAN DRUM ASSEMBLY  1 371 SCAN DRUM MOTOR  1 3 2 ENCODER  SCAN DRUM  13 3 ENCODER  1 3 4 CONNECTION CABLE  115849  MIRROR  1 4 INFRARED RADIOMETER  ES ELECTRONICS PACKAGE  3 53 COMPUTER STACK  PC104  1 5 2 CONNECTION BOARD  1 5 3 POWER CONTROL BOARD  1 5 4 ANALOG  THERMISTOR BOARD  1 6 SYSTEM THERMISTOR SET  i TILT FLUXGATE COMPASS  1 8 GPS  1 9 PRECIP SENSOR  1 10 CABLE l1  SUN  CABLE 12  w2 UPS BOARD  1 13 ANTENNA  GPS  1 14 WINDOW  IR  4 DAQ4 DATA INTERFACE  4 1 RU   REMOTE UNIT  4 1 1 GPS  4 1 2 GPS cable  4 1 3 POLE GPS MOUNTING  4 1 4 ENCLOSURE  4 1 5 MOUNTING PLATE  4 1 6 BOLT  PLATE FASTENER  4   4 1 7 WASHER  FLAT  4   4 1 8 WASHER  LOK  SPLIT  4 1 9 DIN RAILS  3 EA   4 1 21 POWER STRIP  4 1 23 FILTER  LINE  4 1 24 HUB  ETHERNET  4 1 25 DC RELAY  4 1 26 SWITCH  NETWORK  4 1 27 POWER SUPPLY  15 VDC  4 1 28 POWER SUPPLY  24 VDC  4 1 29 AC POWER SWITCH  4 1 40 TERMINAL DIN BLACK  6     4 1 41 TERMINAL DIN RED  2     DESCRIPTION  Complete Isar6 and
37. are available     Installation Guidelines    View to the sea surface  The ISAR must be able to view the undisturbed sea surface at an angle  from  downward  of approximately 15 55    The view must be ahead of the ship wake  The most common view  is directly to port or starboard     AC Power  A stable AC power source  100 240 VAC  50 60 Hz     2A   Research vessels usually provide  a UPS stable power for science and this should be used     Ethernet  An Ethernet connection to the Ul PC is either a direct connection or via router into the  ship LAN  Note  Before beginning the installation a set of IP addresses are required  This can be either  assigned by the R V network  best  or as a direct closed LAN  Table 1 is the set up for the MIRAI      Table of Contents     March 16  2014 ISAR6  amp  DAQ4 User Manual v5 9    Table 1  A table of IP addresses for R V MIRAI        DEVICE IP PORT DESCRIPTION   PC 128 20 8 10 Central DAQ computer    ISAR 128 20 8 11 Ethernet connection to the ISAR    Hub 128 20 8 12 Five port Serial to Ethernet Hub   ISAR   10001 Serial connection to ISAR  9600 bps  8n1   Relay s 10002  RS485 connection to the Adam 4017 DC relay   GPS a 10003 Serial connection to the GPS  9600 bps  8n1   Tilt S 10004 Serial connection to backup tilt sensor   Spare i 10005 Unused port  Setaside for future telemetry    iBoot 128 20 8 13 AC power switch    Cal Hub  128 20 8 14 Three port Hub for the calibration system    Mask 255 255 0 0 LAN mask    DNS 128 20 1 240 Domain name
38. ashrc_air txt  Saved  11 08 12 00 40 15    Page 1 of 3    Printed For     MIke          coo UN Bb un          export PS1   w             bashrc    executed by login and subshells    alias myalias  less    bashrc       The path might be to the mem stick    Volumes TD 4 ISAR   export ISARFOLDER    Volumes TD04 ISAR     it NETWORK   export IPPC  128 20 8 10   export IPISAR  128 20 8 11   export IPHUB  128 20 8 12   export IPIBOOT  128 20 8 13   export IPCAL  128 20 8 14   export MYMASK  255 255 0 0   export MYGATEWAY  128 20 1 240   export MYDNS  128 20 1 1       PERL LIBRARY   export MYLIB  ISARFOLDER  tools    export MYDATAPATH  ISARFOLDER  data   export MYDAQPATH  ISARFOLDER  isardaq4       SETUP FILE NAME      c  is a calibrate version   export SETUPFILE  MYDAQPATH  setup su06 txt   export SETUPCALFILE  MYDAQPATH  setup suO6c  txt   export RUNSETUPFILE  SETUPFILE       PATH CALLS  isarpath  MYDAQPATH   alias gtisar  cd  isarpath   alias gtdaq4  cd  isarpath       SETUP EDIT CALLS     BACKUP SETUP   alias BUsu  cp  SETUPFILE  SETUPFILE bu    alias EDsu  open  a BBEdit app  SETUPFILE   alias edsu  cd  isarpath    ChangeSetup pl   alias EDsuc  open  a BBEdit app  SETUPCALFILE   alias edsuc  cd  isarpath    ChangeCalSetup pl       HOME ISAR      Users rmr swmain apps ISAR4 isardaq setup bash bashrc_air txt Page 2 of 3  Saved  11 08 12 900 40 15 Printed For  MIke          49  50   START CALLS   51 alias START  cd  isarpath    PrepareForRun pl  export RUNSETUPFILE NV cat mp     52
39. dard YSI calibration    iHHHE Channel B thermistor calibration coeficients  Range 268 16   gt 338 16K   1 0      not used double 10      THERM_B_COEF 1 0271173e 3  2 3947051e 4   1 5532990e 7  1 0  1 0  1 0  1 0  1 0  1 0  1 0        Channel C thermistor serial number  str 80     THERM C SN LOT 04A0423        Channel C thermistor description  str 128     THERM C DESC Channel C  YSI NASA grade 46041 0 05K interchangable thermistor witr      Standard YSI calibration    iHHHE Channel C thermistor calibration coeficients  Range 268 16   gt 338 16K   1 0      not used double 10      THERM_C_COEF 1 0271173e 3  2 3947051e 4   1 5532990e 7  1 0  1 0  1 0  1 0  1 0  1 0  1 0        Channel D thermistor serial number  str 80     THERM D SN LOT 04A0423   KT15            Channel D thermistor description  str 128     THERM D DESC Channel D  YSI NASA grade 46041 0 05K interchangable thermistor witr  standard YSI calibration        Channel D thermistor   THERM_D_COEF 1 0271173e 3  2 3947051e 4   1 5532990e 7  1 0  1 0  1 0  1 0  1 0  1 0  1 0       HHHHHHHHHHHHHHHHHHHHHHHH EOF  HHHHHHHHHHHHHHHHHHHHHHHHHHHH HHH    March 16  2014    ISAR6  amp  DAQ4 User Manual v5    48     Table of Contents     March 16  2014 ISAR6  amp  DAQ4 User Manual v5 49    E BASHRC Unix Setup File     Go to Table of Contents   The DAQ software makes much use of the  gt bashrc setup file  A set of alias commands and environmental  variables are used for the software      Users rmr swmain apps ISAR4 isardaq setup bash b
40. ded  FREEZING        shutdown ISAR if ambient temp falls below 273 15K     it ORG WARMING   wait 30 measurement cycles before measurement loops starts    For more details see manual section 7 x   LOG DATA 1   CALC_SST 0   START_DIAGN 0   RAW_PNI 0   RAW_GPS 0   MEAN_REC 0   CAL_REC 1   XTEMP 0   ROLL_PITCH_STOP 0   FREEZING 0   ORG_WARMING 1        Number of cycles  n  to wait after rain event has finished  time is  n 2     Users rmr swmain apps ISAR4 isardaq setup cfg isarconf_run txt Page 2 of 7  Saved  11 08 21 13 24 42 Printed For  MIke          44     45  46  47  48  49  50  51  52  53  54  55    56  57  58  59  60  61  62  63  64  65  66  67  68  69  70  71  72  73  74  75  76  77  78  79  80  81  82  83  84    85  86          secs  Lab 60 Field  4350   int    ORG OPEN DELAY 100   iHHHE Number of scan samples when closed on BB1  amp  BB2   ORG SCAN SAMPLES 500   HHHH Configure ISAR measurement angles  angle in degrees  number of samples   Up      to 10 positions can be sequentially set       Angles 280 0     325 0 must be set for BB on position 1 and 2    SCAN POS 1 280 0 30   SCAN POS 2 2325 0 30   SCAN POS 3z35 0 10   SCAN POS 4 145 0 40   iHHHE Defining variables that will be used to calculate SSTskin temperature   it SEAVIEW POS   seaview scandrum position  SKYVIEW POS   skyview scandrum      position  EMISSIVITY   seawater emissivity  RMR CORR   RMR x correction factor       VREF   reference voltage  0 if using internal voltage   RREF   reference      resistance   
41. ernet cable connect switch to PC or Ship network    Power for the isar    Mounting hardware and components for calibration    March 16  2014    ISAR6  amp  DAQ4 User Manual v5    29     Table of Contents     March 16  2014 ISAR6  amp  DAQ4 User Manual v5 30    B User Interface PC     Setup     Go to Table of Contents    This document provides a general overview of the complete installation of the Infrared Seasur   face Temperature Autonomous Radiometer  ISAR  instrument and data acquisition hardware  and software for the R V MIRAI     B 1 Technician Requirements    The DAQA PC is basically a Unix application  The operators need to be familiar with the  following     e Unix Linux and specifically the BASH shell   e Mac OS X  e Basic networking principals using Unix Linux     e Decome familiar with the text editor program BBEdit     B 2 File structure      Go to Table of Contents   The UI PC file structure should be as follows     home   data Data folders    data 20110612T041450Z Typical data folder name    export Tar zip archive of data folders    data_20110610T094232Z tar gz Typical name of a compressed data folder    sw A11 software and setup files   kt15 Heitronics bandpass data    proc Post deployment processing code    proc_cal Post calibration processing code    setup DAQ setup files  su06 and su06c    cfg  isar  operation configuration files    bash Unix  bashrc files    simulate Simulation software and simulate data files    tools Processing software modules   perltool
42. he arbitrary data length limits of many contemporary Unix tools  facilitating easy manipulation  of text files    The RU is the remote Unit of the DAQ4  It is located in an unsheltered area close to the ISAR  and provides an interface between the ISAR and the User Interface  UI      Southampton Ocean and Environment School  The company that makes the ISAR     Sea surface skin temperature  The temperature of the  approximately  104m of the ocean surface     A network switch or switching hub is a computer networking device that connects network seg   ments     The User Interface  UI  is the part of the DAQ4 that controls the RU  collects and processes data   and computes SSST for the data system     62     Table of Contents     March 16  2014 ISAR   E DAQ4 User Manual v5 63    References    Donlon  C   I  Robinson  M  Reynolds  W  Wimmer  G  Fisher  R  Edwards  and T  Nightingale  An infrared sea surface temperature  autonomous radiometer  isar  for deployment aboard volunteer observing ships  vos    Journal of Atmospheric and Oceanic  Technology  25 1   93 113  2008      Go to Table of Contents     
43. ion for the JAMSTEC R V MIRAI which includes a second generation ISAR   interface electronics  and data collection software    Note  details on the ISAR instrument are provided in the ISAR User Manual that was provided with the  instrument  The manual is available on line at http   www rmrco com proj isar6daq4 isarmanual pdf     REMOTE UNIT  RU     wee Ethernet         RS232    E  T  H  E  R  N  E  T    PC  UNIX  AC 100 240 VAC    Figure 1  The system block diagram        e ISAR  The instrument that looks at the sea surface and measures the sssT from the emitted infrared  radiation     e PPT  A sensitive percipitation sensor that is used by ISAR to close its shutter in case of rain   e GPS  A GPS sensor to record exact position as part of the data record  The ISAR also has a GPS position     e REMOTE UNIT  RU   The electronic interface to the ISAR  The RU provides power control  ethernet  connectivity  and serial connectivity to the different components     e PC  A laptop running BASH Unix  Software in the PC collect and log raw data from the different devices   Ten minute statistics on SSST  position  rain  and ISAR status     e AC  The system runs on external AC power  100 240 VAC  amp  50 60 Hz  Current drain is  lt  2 amps      Table of Contents     March 16  2014 ISAR    amp  DAQ4 User Manual v5 5    1 1 General Description of ISAR    This section is one page description of ISAR  See the ISAR manual for information on service and operation        Infrared Sea Surface Ski
44. it the DAQ Setup file    The setup file is a simple text file and it can be edited easily using Unix edit apps such as VI  or nano  Included with the PC is a powerful editor app called BBEDIT     March 16  2014 ISAR    amp  DAQ4 User Manual v5 14    5 1 1 On BBEdit    Most of the working files in the DAQ4 system are text  ASCII  files and can be edited easily  using BBEdit  To begin the editor simply double click on any menu item with the BBEdit  icon  Any files of type text   txt   hypertext   html   perl   pl   or Expect   ex  will open with  the BBEdit text editor  We recommend highly that the operator here become familiar with  BBEdit    A complete manual   BBEdit  10 User Manual pdf   is provided for for reference  However  the  easiest way to learn the editor is just to use it        5 1 2 Edsu     Full Edit    Brings up VI for a full edit of the setup file     5 1 3 BUsu     Backup Setup File    Makes a backup     Table of Contents     March 16  2014 ISAR6  amp  DAQ4 User Manual v5 15    6 Working with the ISAR    6 1 SSH to ISAR    1  Open a DAQ terminal window        Step 1  OPEN A TERMINAL WINDOW    Terminal  Unix   n            Go to the cfg folder   cd   ISAR setup cfg             2  SSH to ISAR      a  From DAQ terminal command line prompt              enter  sshisar  Or  ssh root0128 20 8 11     b  password      arcom      c  cd  home isar software  6 1 1 To Monitor ISAR Raw Data with SSH  e Go to the data folder  cd  data raw  e Use    1s    to see the last dat
45. ith SSH  enter gtdaq  to go to the ISARA folder    ISAR4 sw      2  IS A SCREEN RUNNING   First check to see if a screen is running       ISAR4 sw   screen  ls  No Sockets found in  var folders MA MAiD5aN       screen       ISAR4 sw      No  there are NO screens running     3  OPEN A NEW SCREEN SESSION  If NO  create the screen session with the Screen command       ISAR4 sw   Screen     You will see a new session with the different working screens at the bottom of the window       miraikansoku    0  USER 1 GG P  2xG I     2014 03 12 17 08      In this example the current screen is 0 USER     0  USER General user screen  Use for testing   1  GG P Reserved for GPS data collection    2 G 1  Reserved for ISAR data collection   Active     NOTE  This is the only time to use Screen with an uppercase S  Only when you want to create a screen  session  There should never be more than one session     4  MOVE TO SCREEN 2  T for ISAR RAW OUTPUT  Screen 2 is active       ISAR4 sw   I   SETUP FILE  Users rmrco ISAR4 sw setup su06 txt EXISTS   SERIAL HUB URL  128 20 8 12   ISAR PORT NUMBER  10001   Connected to hub   set host 128 20 8 12 10001   ISAR CONNECTED     ISAR5  20140312T164641Z  144 98     292 3 302 7 0 06 10200   ISHCG  20140312T164641Z  3 5292  0 1336 0 1341 0 1314 06 10200     End this connection with  N and q  That is hold down the control and backslash key  release  then press  the q key     5  START COMMAND    The START command creates a new data folder and copies the current
46. le of Contents     March 16  2014 ISAR6  amp  DAQ4 User Manual v5 6    1 2 Rain Sensor  PPT   Manufacturer  Thies Clima precipitation sensor  Model 5 4103 20 041    Modifications  Added to it are 12 24 V converter and 1200 ohm resistor for the 4 20 mA output     Other notes  Heaters are not used  Future models might add temperature control      Table of Contents     March 16  2014    1 3 The Data Acquisition System  DAQ     ISAR6  amp  DAQ4 User Manual v5        15 VDC PWR  NTWORK SWITCH     24VDC PWR       PWRPLUG GPS ISAR ETHERNET                DAQA4   ISAR     heno        COMPUTER  MacBook Alr  11          SWIICH   Ethernet     a  SCIENTIFIC AC vc       Figure 2  The DAQ4 Remote  Unit  RU   The RU enclosure  uses AC power and an Ethernet  connection to the DAQ PC  Fea   tures include AC line filter  AC  power control via the iBoot mod   ule   15  amp   24 volt DC power  modules  DC power control to  ISAR via the Relay module  and  a five port Serial to Ethernet hub   ISAR  Relay  GPS  Spare tilt   open      Figure 3  The DAQA User Inter   face  UI   The UI for this installa   tion is simply a Mac Air 11    PC   Data collection software is writ   ten in Unix BASH shell  PERL   EXPECT  and Kermit      Table of Contents     March 16  2014 ISAR    amp  DAQ4 User Manual v5 8    2 Installation    2 1       Figure 4  The DAQ4 installation on the top of the foremast on MIRAI  The rain sensor is at the upper left  and the GPS at the upper right  The power and Ethernet connections 
47. n Temperature Radiometer  ISAR        The Infrared Sea Surface Skin Temperature Radiom   eter  ISAR  is designed to provide sea surface skin  temperature  SSST  measurements in support of sat   ellite calibration and validation activities  ISAR  will be deployed on volunteer ships in a global net   work and its operational goals are to make observa   tions autonomously from a ship at sea for six months  and with an accuracy of    0 1 C     The tiny hole in the inner scan drum looks into a 45  degree mirror that reflects incoming infrared radia   tion into the infrared thermometer inside a water   proof housing  through a transparent window  The  scan drum can be pointed to the sea surface at a vari   ety of angles  at the sky  and back into two high   precision black body cavities  This cycle allows cor   rection for sky contamination and the system is self  calibrating  A small amount of contamination can be  tolerated by this open air design     ISAR incorporates a pitch roll sensor  a flux gate  compass  and a GPS and thus is completely self   contained  A measurement cycle can be completed  as often as once per minute  The optical rain gauge   shown on the upper left side of the instrument  is an  extremely sensitive detector of precipitation  and The outer panel is retracted and the  when any droplets in the air are encountered  the scan drum is rotated for viewing the  scan drum immediately rotates inward and the outer seg surface or sky    door closes               Tab
48. n which one program   the client  makes a service request from another program  the server  which fulfills the request   Although the client server idea can be used by programs within a single computer  it is a more  important idea in a network     The data acquisition hardware and software developed by RMR Co to support installation of ISAR6  and provide computed SSST to local data collection     DIN is an acronym for Deutsche Institute fuer Normung  a German standardization body and  member of the International Standards Organization  ISO   DIN rails and mounting hardware are  standard mounting equipment for a variety of electronic components  including terminal blocks  to connect wiring  DIN rails and DIN mounting hardware are internationally approved  industry  standard hardware for a vast array of components made by computer manufacturers  DIN rail  terminal blocks also offer grounding and disconnecting capability and provide self locking clamps  to ensure a tight connection     A DIN rail is a metal rail of a standard type widely used for mounting circuit breakers and industrial  control equipment inside equipment racks  The term applies to multiple similar standards     Expect is a Unix automation and testing tool  written by Don Libes as an extension to the Tcl  scripting language  for interactive applications such as telnet  ftp  passwd  fsck  rlogin  tip  ssh   and others  It uses Unix pseudo terminals to wrap up subprocesses transparently  allowing the  automation 
49. of arbitrary applications that are accessed over a terminal     A HUB in the DAQ is a device that concentrates several serial communication lines  RS232  RS422   RS485  into a single Ethernet IP port     Infrared Seasurface Temperature Autonomous Radiometer  ISAR   The particular ISAR system introduced after ISAR SN  6     Kermit software offers interactive and scripted file transfer and management  terminal emulation   Unicode aware character set conversion  and or Internet security    Matlab is a numerical computing environment and fourth generation programming language  De   veloped by MathWorks  MATLAB allows matrix manipulations  plotting of functions and data   implementation of algorithms  creation of user interfaces  and interfacing with programs written  in other languages  including C  C    and Fortran     The    modem    is an interface to the Iridium SBD data system  The DAQ4 has all connectors and  software to add the NAL 9602 modem    The National Institute of Standards and Technology  NIST   known between 1901 and 1988 as  the National Bureau of Standards  NBS   is a measurement standards laboratory which is a non   regulatory agency of the United States Department of Commerce    Perl is a high level  general purpose  interpreted  dynamic programming language  Since it was  developed in the mid eightys  it has undergone many changes and revisions and become widely  popular amongst programmers  The language provides powerful text processing facilities without  t
50. oid excessive build up of old data     Clear the data folder ONLY after the above cp and tar commands     1  Move into the ISAR folder   cd ISAR4    2  Remove all data files in the data folder   rm  r data x     Table of Contents     March 16  2014 ISAR    amp  DAQ4 User Manual v5 24    11 Calibration    11 1 Calibration System Description    CASOTS 40001 hr  671 min   16 gpm  with 24 VAC 50 Hz  50 Hz is important  A transformer  to convert 100 VAC to 24 VAC   Probe Thermometrics  225 Hart  1504   Tweener Readout 1504 Tweener Thermistor Readout If you need more accuracy in a limited  temperature range  the Model 1504 Tweener gives it to you as a thermistor readout  Thermis   tors are less fragile than PRTs and less likely to be impacted by mechanical shock  Thermistors  are more sensitive to temperature  have faster response times  and come in many shapes for  different applications    Typical accuracy of a 1504 is 0 002 C with a resolution of 0 0001 C     Model 5642   Diameter x Length 3 18 x 229 mm  0 125 x 9 in   Range 0 60 C   Drift 0 002 C Year   Accuracy  Mfr     Wires    Nominal Resistance at 25 C       Figure 16  Calibration electronics                 Prepare for the Calibration     1  Remove ISAR from the foremast  Leave all cables  Wrap unconnected cables in a plastic  bag to protect from weather       Service ISAR as needed  See service procedure     Place the ISAR in front of the CASOTS bath       Connect the ISAR test cable  Make sure all connections to the cal 
51. om the PC to ISAR   Start fetch to ISAR  fetch isar 128 20 8 11    Password  arcom     Table of Contents     March 16  2014 ISAR6  amp  DAQ4 User Manual v5 17    6 4 ISAR Tools Test Program       ISAR TOOLS Menu    ol Open shutter   a  Close shutter     cl Dpen   Close shutter n times 1 H   fel Read scen encoder   Kill  isar program    IE  Point Scan drum to angle   lo  Read GPS    kl Send command to KT15     Il Send std boot sequence to KT15   cd  home isar software   i Faceplate LEDs   A Read AD channels H A  IRI RS4B5 commands from config file   Figure 11  ISAR Tools menu   Ir  Write Read RS4BS channels    isartools   151 Scon test with individual scan angles   isl Standard scan test   tm Thernistor Teapertures    ivi Supply voltoges    lal vit  Enter option    LI             6 5 ISAR Configuration File     isarconf cfg  The ISAR configuration file is located in the software folder in the ISAR computer    home isar software isarconf cfg    This file contains information on the ISAR and ISAR operation  When the program boots up it  reads the config file    Data lines in the configuration file are constructed like the lines in the DAQ setup file except  an equal sign           is used instead of the colon as a separator  E g     START_DIAGN 0    is a typical line in the ISAR config file   A copy of the configuration file is located on the DAQ PC as   HOME ISAR4 sw setup cfg isarconf_run txt    6 5 1 Edit CFG file in PC and Move to ISAR     1  Copy isarconf cfg to the DAQ PC 
52. s PERL code modules    socket Code for TCP IP socket     WWW Web page for quick reference   parts Parts spreadsheets and information    AllParts All information on parts listed in the part list    1 ISAR ISAR parts  manuals  etc    4_DAQ4 DAQ4 parts  manuals  etc   daq4  spreadsheet   pdf Complete spreadsheet for the DAQ4 system   ISAR DAQ4 IndentedParlList pdf Indented  quick look  spreadsheet    refs Reference documents  papers    slideshow Slideshow describing the DAQ4 system and operation    training Training slide show      UserDocs All user documentation used in the web pages     March 16  2014    B 3  User files    Xcode Tools    Xcode installer    Reboot  MacPorts     Terminal    Kermit    e   TeXShop    Tc           ISAR6  amp  DAQ4 User Manual v5 31    Steps to Setup a New PC    install the latest user files  These can be obtained from RMR Co  It is suggested that these be provided  directly from RMR Co by email ftp data transfer     The programmer   s package    Xcode Tools    must be downloaded from the Apple Xcode Web site  It costs  a small amount for the package   10   The download file is very large  approx 800 MB  so allow plenty  of time for the transfer     After the Xcode Tools package is installed  and this could take a few hours  you must run the installer  package  Go to the Applications folder and double click the    Install Xcode    application     At this time reboot the computer so the Xcode package is loaded into the operating system     The MacPor
53. str 80     135   SCAN_MOTOR MAXON A Max 110926 Installed on  2011 04 21   136      ISAR 5D shutter drive motor and gearbox serial number  str 80     137  SHUTTER MOTOR MAXON A Max 110926 Installed on  2011 04 21   138     139 IHHHHHHHHHHHHHHHHHHHHHHHHHE GPS configuration     HHHHHHHHHHHHHHH   140     141 mn Trimble GPS board serial number  str 80     142 GPS_SN 85843798  Lassen SK8    143 GPS BAUD 4800   144     145 HHHHHHHHHHHHHHHHHHHHHHHHHHE KT15 configuration DO NOT ALTER    HBBHBBHBBBBBBBBBBBHHHHE   146     147      KT15 85D Serial number  int    148 KT15 SN 10200   149 mn Date and details of KT15 85D last calibration  str 255     150 KT15 CAL 2010 27 11  Polynomials for R2T     T2R  TJ Nightingale   151   H H  KT15 emissivity setting command  0 001   gt  1 000   str 15     152 KT15 CMD EMISIVITY EPS 1 000   153   H H  KT15 response setting command  0 05  0 1  0 3  1 3 or 10 seconds   str 15     154 KT15 CMD RESP RESP 1 0   155 mn KT15 analog output setting command  DO NOT ALTER WITHOUT CONSIDERATION TO     CONSEQUENCES   str 30     156 KT15 CMD ANALOG ANALOG  100 0 50 0 C 3   157      KT15 serial interface setting  DO NOT ALTER WITHOUT CONSIDERATION TO     CONSEQUENCES   str 20     158 KT15 CMD SERIAL COM 96 8 1n   159 mp KT15 Temperature to Radiance coefficients based on kt15 filter response   1      not used   double 9     160 KT15 COEFF T2R  22 925646e0 65 196703e0   81 215855e0 56 792568e0   21 105313e0 3     12575460e0   1 0  1 0  1 0   161      Radiance to Temperat
54. system are correct     CU e WwW N      Turn on AC power to the calibration system  Check the lights on the switch  hub to be  sure power is on to all devices     March 16  2014 ISAR6  amp  DAQ4 User Manual v5 25    10     11   12     13   14     15       Connect the Mac Air  or a calibration PC if different  ethernet connection to the network    switch on the calibration circuit       Ping the calibration hub with the PingCalHub command  The ping must be successful       Connect to the ISAR with the Ic command  The ISAR data lines should be correct  Note     For the calibration the ISAR view angles are 325  280  25  and 90 degrees       Turn on the Hart temperature readout  Check that the probe is inserted into the bath    properly  Check that the temperature readout is degC     Check the temperature probe with the B terminal command  The readout should produce  temperature records each 2 seconds     Begin the Calibration   Add ice to the bath water to cool the bath to at least 10 degC     Use the B terminal command and check the start temperature is low enough  End the  connection with  lt control gt    followed by Q     If everything checks out enter STARTCAL to setup the calibration data folder  datacal         Begin data collection with the terminal command Gc   Ending the Calibration     End the calibration when the water temperature exceeds 35 degC  Enter  lt control gt  C to  terminate the data collection      Table of Contents     March 16  2014    A PARTS     Go to T
55. ta data_20140311T050619Z   GPS INFORMATION FILE   Users rmrco ISAR4 data data_20140311T050619Z gps_info txt  INFORMATION FILE   Users rmrco ISAR4 data data_20140311T050619Z gps_info txt   OPEN GPS PORT 128 20 8 12  port 10003Launch kermit   OPEN PORT 10003   set host 128 20 8 12 10003   PORT 10003 CONNECTED   GPS handle   exp14   AVGGPS is ready  id exp15    DAY CHANGE   RAW FILE NAME    Users rmrco ISAR4 data data  20140311T050619Z gps  raw  140312  txt  GPSRW 2014 03 12 16 58 32 35 32031 139 65006        165834   GPSRW 2014 03 12 16 58 37 35 32031 139 65006        165839     lt  lt GPSAV 1 2014 03 12 16 58 00 35 32031 139 65006 0 03 82 4  7 0        The GPSAV line is printed each minute      9  DETACH FROM SCREEN  Detach from the session so it is available to other users       ISAR4 sw    a d     Enter  a  control a  then d for detach     Now the screen processes are operating in the background      Table of Contents     March 16  2014    K Glossary    ASCII    CASOTS    CLIENT SERVER    DAQ4    DIN    DIN Rail    EXPECT    HUB    ISAR  ISAR6  KERMIT    MATLAB    MODEM    NIST    PERL    RU    SBD  SETUP FILE  SOES  SSST    SWITCH    UI    ISAR6  amp  DAQ4 User Manual v5    The American Standard Code for Information Interchange is a character encoding scheme based  on the ordering of the English alphabet  The same as a    text    file     The portable water bath calibration system developed by SOES     Client server describes the relationship between two computer programs i
56. time 0 528 ms The ping command can be entered in a command    64 bytes from 139 166 246 43  icmp seq 2 ttl 64 time 0 540 ms window simply as  in the case of the hub   64 bytes from 139 166 246 43  icmp seq 3 ttl 64 time 0 658 ms  64 bytes from 139 166 246 43  icmp seq 4 ttl 64 time 0 657 ms  64 bytes from 139 166 246 43  icmp seq 5 ttl 64 time 0 568 ms ping 128 20 8 12  64 bytes from 139 166 246 43  icmp seq 6 ttl 64 time 0 641 ms  64 bytes from 139 166 246 43  icmp seq 7 ttl 64 time 0 522 ms          64 bytes from 139 166 246 43  icmp_seq 8 ttl 64 time 0 605 ms where the IP address is the one assigned and  y   bytes from 139 166 246 43  icmp_seq 9 ttl 64 time 0 658 ms shown in table 1        PingHub Pings the hub module    PingiBoot Pinfs the iBoot AC power module    PingCal During a calibration setup pings the Hart Readout module   Pinglsar Pings the ISAR instrument ethernet connection    PingMe Pings the DAQ PC     8 2 I     Direct Connect to ISAR    The    I    command runs a kermit program to make a direct connection to the ISAR via its RS232  serial connection  The raw output from the ISAR will be displayed    This connection can be used to terminate the ISAR operation by entering    T       Terminate an I session by entering     lt control gt       followed by    Q        8 3 P     Direct Connect to GPS    Enter  P  to connect to the GPS  The output should be a GPRMC string every ten seconds   Terminate a P session by entering     lt control gt       followed by    Q  
57. ts package is a method for downloading and installing software packages     ports     automatically  and easily  Go to the MacPorts download page and follow the instructions  A good user guide is available  on line     Check the install is successful by entering    port and the reply should look like    MacPorts 1 9 2    followed  by a prompt  Enter    quit    to end the port application     Configure the Terminal  Unix shell  application     Run the Terminal window  In preferences  under the    Window    tab  set    Window Size    to Columns 155  and Rows 32  Number of rows set to 10000     Under the    Shell    tab  Startup Run Command field is blank   All other settings such as color or keyboard settings can remain default     From a terminal window use the    nano    application to edit the file named       profile    so the last line  containes the command    bash        Install the Kermit software  A good site for this is via the MacUpdate site    Download the Kermit package  kermit80212  and place it in the   sw  folder    cd to the kermit folder and run    make macosx       Next run the command    cp wermit  usr bin kermit    to place the program in the correct location   Using    nano    or other text editor create a file    kermrc in the home directory with the line    prompt Kaz      Check the install by entering    kermit    in a terminal window  You should see a prompt     k gt  gt      Enter     version    and the reply should include a line with something like 
58. ure coefficients based on kt15 filter response   1 not      used   double 9     162 KT15_COEFF_R2T 273 15973e0 54 529628e0 10 634341e0 2 0172007e0 3 6480705e 1 5       7776974e 2 6 5293295e 3 3 5814663e 4  1 0   163     164 IHHHHHHHHHHHHHHHHHHHHHHHHHE Electronics configuration DO NOT ALTER      HBHHHHHHHHHHHHHHHHEE   165      CPU BOARD   166 CPU BOARD DESC ARCOM TITAN   167 CPU BOARD SN 2   168      COM BOARD   169 COM BOARD DESC DIAMOND SYSTEMS EMM   170  COM BOARD SN 2   171      AD BOARD   172 AD BOARD DESC DIAMOND SYSTEM DMM    173          AD BOARD SN 2     Users rmr swmain apps ISAR4 isardaq setup cfg isarconf_run txt Page 5 of 7  Saved  11 08 21 13 24 42 Printed For  MIke          174  175  176  177  178  179  180  181  182  183  184  185  186  187  188  189  190  191  192    193  194  195  196    197  198    199  200  201  202    203  204    205  206  207  208  209  210    211  212          HHHH POWER BOARD   POWER BOARD DESCZNOCS   POWER BOARD SNzP2 RevB   HHHH THERM BOARD   THERM BOARD DESCZNOCS   THERM BOARD SN T2 RevB        Serial number of CFCard  char 10   e g   SOCOe1   FLASHCARD NOC005F       THHHHHHHHHHHHHHHHHHHHHHHHHE Black body  1 configuration         HHHHHHHHHHH           BB1 serial number  int    BB1_SN 11        BB1 description  str 128     BB1_DESC See ISAR BB Configuration doc for history        BB1 thermistor 1 serial number  str 80    BB1_THERM1_SN ISAR TH10 11032        BB1 Thermistor 1 description  str 128     BB1 THERM1 DESC YSI NASA grade 46041
59. v Prevent sleep with lid closed  displays will sleep   xr Prevent sleep with lid closed  displays will NOT sleep  1 110 Preferences  gt    2  xt   201 Safe Sleep now  Hibernate   if 201 Open Energy Saver      110 About SleepLess 13  10615    Quit       Dr o od OS ZS    f    n          4 3 Set the Ethernet addresses     Refer to table 1 or one like it for the installation  Each of the devices must be set to the correct IP  mask  and    router if needed  The DAQ PC must be set to the PC address     e Open Apple  gt System Preferences  gt Network     12    Figure 8  The Sleepless Menu   The sleepless icon in the menu  bar as shown above has a red tag  when it is set properly     e In the menu select    Prevent  sleep with lid closed  displays will  sleep    as shown     e Set up a Location for the installation   Check to be sure a proper Location has not been already set up    The IP assignment should be manual     e Set the IP address  Mask  and Router if that has not been assigned     4 4 Goto the DAQ Folder    Open a terminal window and enlarge it  by dragging the corner  to almost full screen size     Jump to the DAQ software folder by entering the alias gtisar     7   gtdaq    ISAR4 sw      NEW  NEW     Table of Contents     March 16  2014    5 DAQ Setup File     su06 txt    The DAQ setup file full name is  HOME ISAR4 sw setup su06 txt  It contains information for data collection and computation of SSST     ISAR6  amp  DAQ4 User Manual v5       Shared Folder    Nam  dame   
    
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