簡易操作マニュアル1
Contents
1. WW 347 359 784 44 1566 87 1566 74 0 14 0 K DAFLGSFLYEYSR R Tons score 55 360 371 480 64 1438 90 1438 80 0 10 1 R RHPEYAVSVLLR L Tons score 16 375 386 752 81 1503 60 1503 57 0 03 0 Tons score 45 375 386 752 81 1503 60 1503 57 0 03 0 45 387 399 519 22 1554 65 1554 63 0 02 0 K DDPHACYSTVFDK L Tons score 10 387 399 519 23 1554 65 1554 63 0 03 0 K DDPHACYSTVFDK L Tons score 28 387 399 519 24 1554 70 1554 63 0 07 0 K DDPHACYSTVFDK L Tons score 19 402 412 1235 92 1304 73 1304 71 TonS score 20 0 K 402 412 435 93 1304 76 1304 71 0 05 0 0 Ions score 12 421 433 740 45 1478 88 1478 79 0 09 0 K LGEYGFONALIVR Y Tons 54 421 433 740 45 1478 88 1478 79 0 10 0 K LGEYGFQNALIVR Y Tons score 46 437 451 547 32 1638 95 1638 93 0 02 1 R KVPOVSTPTLVEVSR S Ions score 47 437 451 820 54 1639 06 1638 93 0 13 1 Ions 8 lt 898 46 4 Ions score 33 499 507 570 75 1139 48 12. 1 Option for Mascot Conversion Option for Mascot Conversion Option for Mascot Conversion 0 Calculate Mass 2 Charge Precursor m z On Of m z State of Precursor Ion Precursor m Selected Monoisotopic _ Output 5 Spectrum Precursor MS MS
3. Back Flush Time Gradient Pump gt Solvent names Gradient 2 2 90 120 lt Thermo gt Temperature Tolerance Bave Bave amp Apply 1 3 Control Panel
4. MS TIC 51 TIC MS MS 51 rc gt Add Remove Duplicate Active Trace ctive Traces Nr rc iq Histor S 8 T43 7 sares 151 8 9 288 MS MS TIC BPI 2 MS TIC MS MS MS TIC
5. System Status 5 10 gt On Off System Status Counter Gas Ionization AP Lens Instrument Setting File AP1 AP2 130 140 nanoESD Status Curtain Gas System Status 182 System Status _
6. Target Grouping Grouping Include Limt Exclude Limit Include Limit Target MS MS 1 Group 0 180 sec Exclude Limit mclude Target MS MS MS MS Group Grouping 0 180 sec Grouping MS MS Event Target Event MS MS Grouping Grouping
7. PC NanoLC Nano Flow Pump Status Pressure Flow Cyclic Time Active Valve Purge Back Flush Valve Injection Valve Gradient Pump Status Pressure Flow A B C Loading Pump Status Pressure Flow A B C D Nano Flow Pump Loading Pump LC LC Method Setting
8. Target 0 01 30 00 As Method 24 Target gt 2 2 1 Target Method Exclusion Condition Reject Acquired Mass by Last Data Of 2 Method 6 5 1 Exclusion Condition Reject Acquired Mass by Last Data 2 Method Target Target Table
9. Spray potential 47 NEw oBjECTIVE Technical Note PV 3 Background lons Electrospray Positive lm m z lon Compound m z lon Compound 101 DMSO 267 tributylphosphate 102 M Hr triethylamine 273 monomethoxytrityl calion MMT 1047106 M Cuy acetonitrile 279 tM HP dibutylphthalate plasticiser 105 2 acetonirile 282 plasticizer in polyethylene 120 MM4Na CHCN DMSO 301 dibutylphthalate plasticiser 122 Tris 317 MrKy dibutyiphthalate plasticisen 123 M H dimethylaminopyridine 336 tributyl tin formate 130 M HP diisopropylethy lamine DIPEA 338 M Hy 137 MTACN NHD DMSO 360 erucamide 144 M HY tripropylamine 371 Polysiloxane fellowed by 388 145 147 2 acetonitrile 391 Mr Hy diisoocty phthalate plasticiser 146 3Mr Nay 413 MtNay diisooctyt phthalate plasticiser 150 phenyidiethylamine 425 unidentified contaminant 153 Mr Hy 1 8 diazabicyclol5 4 0Jundec 7 plasticiser ene 429 M K disooctyt phthalate plasticiser 157 DMSO 445 polysiloxane fellowed by 462
10. MS MSZMS TIC MS MS AutoMSMS_sample dat 5 733 2 Intensity Retention Time SPEC AutoASAS_samnpla dg 2 Spec MS2 1274 1278 2 60 32 72 595 3 1148 595 assesassasss 951 4287 Intensity 1017 4585 MS MS MS MS MS2 MS MS MS MS MS MS 2 5 mgf Grouping Mascot mgf Mascot Grouping
11. Standby ON Standby 1 OFF 0 3 5 8
12. Z Y 1 X nanoESI MS Status ON Instrument Setting Window Spray Potential
13. Target 5 MS MS M6S Event 5 MS MS Instrument Low MS CID Mode M MS MS MS Target MS MS MS 2Event Eventl MS Eventl Event2 Auto MS Event 1 Segment Setting View Edit Setting Cordiional Event Parameter Impgft File View Edit 5 Bseryed Event MS Instrument Setting MS MS Event1 Accumulation Time Micro Sequence Event 2 Eventl
14. Nano LC system 1 2 NanoLC NanoLC NanoFlowPump GradientPump LoadingPump AutoSampler NanoFlowPump PC 20 NanoLC Nano Flow Pump IPurge On IPurge OfHI Pump On GradientPump LoadingPump UI UL A B urgd Purgd ina
15. A 898 48 898 48 1304 76 1304 71 1929 82 1929 74 2462 32 Process Mass Calibration Perform Calibration htier L Control C WManoFrontierVirapTofWBIC 20060626_NanoESI_ FNF Calibration Import Calibration Target Exclusion Table Export Calibration Mass Calibration 3 1 Mascot DK 359 Mass Calibration Select Calibralion Heference Fl ENNanoFrontie TrapTof Method posiref Calibrahion Peak Selection Ubserved Expected Mass Observed Mass Expected Mass Use Feak Mass Of Centroid NanoESI TOF 46 nanoL
16. 0 7 System Status Bystem Settings Iinstrument gt TOF Analyzer Mass System Settings Instrument Instrument Trap Target Mass Range Standard System Settings 2000 amu System Settings Analyzer Mass Max Analyzer Mass 2000amu Low MS CID gt MS MS v
17. Standby 30 System Settings Low MS CID On Of Low MS CID Low MS CID On Low MS CID CID Low MS CID Target Mass Standard 1002000 ENended 1004000 am System Settings System Settings Lens Setting Sensitivity Low MS CID i Of Instrument System Settings System Settings nstrument Low MS Low MS CID iv
18. Pause Seauence e Stop Sequence Stop Sequence NanoLC NanoLC 280 2 NanoFrontier eLD Method MASCOT mgf Mascot Generic Format File v 2 1 Grouping MS Target MS Target MSMS
19. OfF Standby 30 On Low MS Trap Lens Pole Lens Low MS 8 Standby OF Standby Stendby Of Standby Trap He TOF He 2 3 9 Ap1 Ap2
20. Data File 64 001 3 Full Data Path 384 Sample ID 128 Acquisition Duration 0 1 180 0 0 1 MS MS Settings bic MS msm Nano LC msm MS Settings 128 MS Control Panel Method LC Settings 128 Nano LC Nano LC Control Panel Method
21. Output Single Charge Spectrum Precursor MS MS Output Peptide Charge State Precursor MS MS 06 Output Monoisotopic 5 5 5 Spectrum _ Minimum Number of of 5 5 MS Spectra 28925 Fil Convert and Save Files for Mascot st TOF_Neg
22. Curtain Flow 1400V 1600 1800V 1400V TIC nano ESI AP1 AP1 22 5 bic Instrument Setting File bic Trap nanoESI Spray Potential i4oo is00 GpeleREvetage os 5 000 1200 Ex Potential ioocu
23. v System Status 3 2 1 Waiting Minor Fault NanoFrontier L LD 3 2 2 Instrument Status Shut OFF Standby ON OK Waiting MinorFault MajorFault System Status Instrument Mode Trap Standard Trap Extend Trap Std LCID Trap Ext LCID Status ON Micro ESI Nano ESI Semi Micro IS
24. Exclusion Peak Number SMS MS MS Target _ 1 Target 2 Target Exclusion Condition Exclusion Condition 9 Peak Threshold Exclusion 30 100 1 10000 MSMS MS MSMS
25. 3 O 5 6
26. CID CID Event2 Event Conditional Event Conditional 0 509 0 CID Condition Condition 9 MS MS MS Mass Range 1 Target MS MS Event2 1 Event3 2 Event4 3 __ Mass range Charge Method Setting Exclusion Target Method Setting Exclusion
27. Target MsS MS 1 150 10000 100000 Target MSMS 1 100000 Integrated Intensity 29302 Exclusion Time min 3 00 5 00 Analysis Time min MS Analysis Time min Exclusion Time min
28. Ionization 14 Standby On 5 Standby On strumen nstrument On On gt nanoESI MS ai AP1 Spray Potential Counter X Y v
29. MS MS He CUD MS CID TOF MS MS MS MS MS CUD Low MS Low MS MS Method Low MS CID Low MS CID bic Import Method CUD MS CID He
30. Spray Potential Counter KYA BSA Spray Potential nanoESI 10
31. MS PC Shutdown 43 TOF MS TOF X ESI
32. On Exclusion Target Use RT Information Off Exclusion Target Of m z 0 1 0 5 0 1 10 0 Target Table On Of RT Tolerance 1 0 3 0 0 5 10 0 Add Update Target Table Target Table Target
33. MS2 Group MS MS Target Target Calculate Mass Charge of Precursor Ion List Precursor lon Target Groupng 233 4 Grouping Grouping Data Processing Grouping Grouping Grouping Grouping 34 Retention Time
34. 1 10000 MSMS Target MS MS MS 2 3 4 5 MS2 Threshold MS2 Charge Target Exclusjon Control Target On 4 Off Target Analysis Time LC MS MSMS 0 01 10 00 nas Analysis Time min 2 5
35. m z 7 0 1 2 0 0 5 10 0 Combination file MGF Output Conversion Option MGF MS3 spectrum js included RT Tolerance Data Sing Matrix Science Mascot generic fle format mgf 4 MS2 mg mgf mgf Ego ev
36. MS Type MS Instrument Setting Micro Sequence Eyent Param Accumulation Time Accumulation Mass _ Accumulation Gain MS Event 1 Event 2 Event2 ional Observed Event 1 Instrument Configuration Event2 Event Parameter Instrument Setting Eventl Event 2 MS MS Event Conditional Observed Event Event 1 MS MS Event2 MS MS AutoMS Event Parameter M
37. NanoESI NanoESI 31 Mascot Mascot ProteinView 0 05 0Da 0 15 0 1Da Error 2000 RS error 34 pp Mass 0
38. Current Entry 1 100 Elapsed Duration 0 180 min File Name 64 MS Method 128 MS LC Method 128 Nano LC lt gt MS General 5equence Parameters HookDirectom_ ENNanoFrontier TrapTof 54 Direct Optons Standby End of Sequence Immediately Contact Close Delay min 1 00 Author FStopOn Root Directory 256 Directory 128 Options
39. Grouping Grouping Group Off Groupmg Group Grouping Retention Time Grouping Retention Time Precursor lon m z Grouping Target m z Grouping option for MS MS MS MS Peak Detection Display Sort Option for MSn Group Export Option for Grouping Result Grouping Target Precursor Ion List Precursor Ion List Browse pPrecursor List LExport Precursor List MS2 Group Only Precursor List
40. bic TOF bic Trap bic 1 17 1 4 Method Method Segment Instrument Setting bic Method 1 Trap Standard Extended TOF Instrument Setting 0
41. Target Grouping MS MS MS Event Auto MS 1 Auto MS TIC MS MS MS Grouping 2 Grouping 1 SE _ Grouping MS MS Grouping Tareet Target Grounp 0 10 Threshold for Precursor Ion Intensity Target
42. On Reject Acquired Mass by Last Data Mass Tolerance amu Use RT Information 25 1 5 AutoSequence Sequence NanoFrontier LD Nano LC MS 1 Nano LC 2 Nano LC MS Nano LC MS Autosampler Auto Sequence lt gt Status Acquiring Waiting LC MS Ready Fault Nano LC MS error Paused
43. MS Standby On MS Standby Nano LC Standby 5 Nano Flow Pump Gradient Pump Loading Pump Standby 50 nL min 0 01 1 _ 50 50 Start On Immediately Contact Close Nano LC 0 0 10 0 0 1 Author 128 Comment 256 lt gt ID MS Nano LC
44. Target MS MS Precursor Ion TIC 4 amp amp TIC MS RT0 02 60 02min Even1 Segment1 9 52 RT16 48 16 73min 14 9sec Precursor mjz 489 Evenk2 Segment1 9 9 MS2 RT19 16min Precursor mjz 749 Event2 Segment1 9 52 20 07 20 32 14 9 Precursor mjz 435 Even2 Segment1 Hb MS2 RT20 38 20 59min 12 3sec Precursor mjz 488 Event2 Segment1 MS2 RT20 42 20 63min 12 3sec Precursor m z 325 Event3 Segment1 9 09 52 RT20 69 21 00min 18 4sec Precursor mz 300 Event2 Saoment1 8 9 52 RT20 73 21 10min 22 1sec Precursor miz 450 Event2 3 5 1 9 09 MS2 RT21 04 21 34min 18 4sec Precursor 518 Event2 3 Segment1 9 0 MS2 RT21 14 21 45min 18 4sec Precursor miz 346 Event2 3 Segment1 89 MS2 RT21 41 21 57min 9 9sec Precursor mjz 395 Event2 Segment1 9 MS2 RT21 63 22 00min 22 1sec Precursor mjz 386 Event2 3 Segment1 9 Ms2 RT21 67 22 06min 23 5sec Precursor 411 Event2 3 Segment1 9 52 RT21 90min Precursor m z 411 Event2 Segment1 Ms2 RT22 13 22 29min 9 9sec Precursor 723 Event2 eqmen
45. Comment 256 Vial Number 1 384 1 Injection Volume 0 99 9 nL 0 1 0 22812 NanoLC Sample 3 Blank Standard Unknown 3 Standard Ratio 0 00001 100000 00000 1 1 5 10 50 0 2 0 1 0 02 Unknown Ratio 0 00001 100000
46. Loading Pump gt Solvent names lt Flow Pump gt Nano Flow Pump Flow Data Acquisition Time Target Pressure Equilibrium Time Sample Loading Time NanoLC Lul 3 4
47. 8552 R28 19 28 239ec eyeor S85 Evert3 MSZ RT25 35 28512 Precursar miz 519 Event2 Scomertt 9 PEz RT26 50 28 76mwW15 eec Precursor mz 778 Evert2 3 Segmerkl 372P MS2 5 2 RT29 21 29 46man 16 0ser Precursor 481 Event2 3 Segmert RT29 42 29 6Bmww16 0sec Frecursow mfz 547 Event2 3 Segmerd1 129 Samen Precurscr miz 639 Evert3 Seomert1 ED 52 RT 40 30 81 24 Sec Precurzor ms 382 Evert3 Soomertt MS lt 47 30 87mmwWz4 55 Procursor miz 572 Evert2 Seomortt 1 61 31 22 2 Procursor ms 789 Event2 3 Segnertl RT31 79mw miz 583 Evert2 MS2 92 52 1 16 0 ye S21 2 5 MS2 2 Praoursor iz 674 Evert3 Seomert 52 RTS2 13mwn Precursor fz 532 Evert3 5eomertl MS2 732 23 32 49 16 05 Precurson 633 Event2 3 Segmerk 1 RT32 15 32 66mnd13 35ec Precursor mVr 582 Event2 Segrment ME2 RT32 60mn Precursoe miz 527 Evert3 Seagertl MS2 RT32 70 32 90min 12 3sec Precursor 590 Evert3 Sagrmart i DD ME2 2 76 32 6min 6 1 20c Pecursr 596 2 Seqmentl MS2 RT32 80mw Prewzcr miz 401 Everk3 Segmert1 52 732 97 15 11 Precursor mW 62 Event2 Segmertl 2 RT33 19 39 40minC12 Precursor mz 468 Evenk3 Seomertl 52 RT33 26 33 60mn20 65ec Precursor 475 Event2
48. Instrument Setting Method Method MS Method Editor Segment MS Method Editor Untitled Event Event Event Method Event lt MS gt Auto MS Auto MS MS MS Target MS MS M6 Event MS MSMS MS MS MS MS
49. TOF Control Panel System Status Instrument Status OFF NanoFrontier LD MM Shut NanoFrontier LD Instrument Instrument Shut 10 OFF MS MS ON
50. 00000 Unknown 1 10 0 1 Imternal Standard Amount 0 001 100000 000 29 1 6 Start Sequence Full Sequence Ll Start Sequence Partial Sequence 27 Start Sequence Full Sequence Start Sequence Partial Sequence Auto sequence rontier Seguence Untitled1 Status Start Sequence Full Sequence e gt Start Sequencel Partial Sequence
51. 139 46 0 02 0 score 62 499 507 570 77 1139 53 1139 46 0 07 0 Ions score 41 508 523 627 99 1880 96 1880 90 0 06 0 Ions score 16 508 523 628 00 1880 98 1880 90 0 09 0 R RPCFSALTPDETYVPK A score 11 548 557 381 58 1141 72 1141 71 0 02 1 Tons 23 548 557 381 58 1141 73 1141 71 0 02 1 K KQTALVELLK H Tons score 34 548 557 571 88 1141 74 1141 71 0 03 1 K KOTALVELLK H Tons score 46 548 557 571 88 1141 75 1141 71 0 04 1 K KQTALVELLK H Tons score 59 569 580 700 41 1398 80 1398 69 0 12 5 5 1 0 598 60 501 80 1001 58 1001 58 0 01 0 35 598 607 501 80 1001 59 1001 58 0 01 0 Ions score 38 RNS error 50 ppm Mass Da Mascot ProteinView Mascot Mascot 3 ABC
52. 159 Mi Nay sodium trifluoroacetate 449 2M HF dicyclohexyl DCU 179 M Nay DMSO 454 M NarCHiCN dissooctyl phthalate plasticiser 186 M Hy tributylamine 522 Unknown 214 Unknown surfactant 550 Unknownt 217 Unidentified contaminant 798 QMINHF disooctyl phthalate tplasticiser 225 dicyclohexyl urea 803 2M Nay disooch l phthaiate plasticiser 231 M NHiP Unknownt polymers exhibit 44 239241 HM HCD2 CH friethylamine 242 M tetrabutylammonium C4Hs aN Adducts 243 frityl cation MI NH 18 257 3M HY DMSO M 23 MT KYY 39 background of 50 0 1 Formic Acid Andreos Schlosser and Kudof Volkmes ngert Yolatiie Specirom 2003 38 523 525 or information on these The information con4oiped m this docvmen beeved rekobAe ond however herein conafites ey Gocuole nothing worranty or represantation of kind or in the gmblenf iaboratory ldenfiiad as source of extreme bockground in common background nanoESI Newobjective 48 gt
53. 3 2 RT33 46 33 tman 20 6sec Precursor 600 Event2 3 DD MGz RT33 71 34 01 18 4 Pr ocursor mWs 583 Event2 3 Segmertl OD MS2 RTI3 91 94 1 minl12 35ec Precursor 867 Event2 3 Segmert1 RT31 08 31 16mmn6 1zec Precursor m z 474 Evert2 Segnerti MS2 RTI4 22 34 42min 1 2 3sec Precursor 815 Event3 MS2 RT34 26 34 59mwm 18 452c Precursor ms 711 Event2 Segment MS2 RT34 52 4 79 16 Osec Precursor mfz 480 Event2 3 Segnentl RT34 73 35 0 18 7 Precursor mWz 508 Event2 3 Seqgmert1 Target Segment Event TIC 2862 2 2 MS MS MS Auto MS MS MS MS v MS MS MS MS MSMS MS MS MS
54. C MS gt 0 1 or 3 NanoESI nanoLC ESI m z445
55. NanoFrontier e 1 1 NanoFrontier eLD MS Sequence Auto Sequence Control Panel LC Desktop LTC Connect 1DLC 2D Connect 2DLC Nano LC Control Panel 20 jm 5
56. a_Marker_10min_001 dat TOF_Posi_Marker_001 dat TOF_Posi_Marker_10min_001 dat Trap S_M52_Reserpine_001 dat Nega_Marker_001 dat Grouping set mgf Mascot MS On MS Of MS MS File combination is used 1 MGF 8 Precursor m z Mass Tolerance
57. ee MS2 5 1 2 1017 1019 22 92 22 99 ASCs gt RS45000 gt CT BP 235 1 2 55 404 5248 INTENSITY 126 8473 CHARGE 3 5 0637 5006 BEGIN TONS TTTI Fs4RGC21 Sner MS2 lt 1 21 1036 1042 23 39 234 071 ASFasEY4SOO0axTTTRP 02 7 lt mg gt BEGIN IONS MS MS TITLE MS MS PEPMASS MS MS m z CHARGE MS MS 5 PERMASS m z 235 0637 1 5006 MS MS m z 610 2288 0 5000 END IONS MS MS i lt gt nanoLC Conditioning Window Of Sequence LC Disconnect Close Auto Sequence
58. iew Edit Event Parameter Setting Dialog MSn Setup DK Eyent Parameter Setting FT Event Parameter Setting Dialog MSn Setup MS MS Target AutoMS Isolation Time Isolation Width 3 7 Isolation Tereet FNF AutoMS Target Mass CID Time Eee CID 5 10 ms Gain CID _ Mass CID Level Target Mass 3 ET 6
59. o Qpole Offset Potential 5 9 Temperatuer Deflection 1 0 1 0 Temperature Einzel Potential _ i0 50 AP2 Potential 45 55 Vane Potential 2 Temperature i140 RearVane Potential 610 Octa RF Voltage 10 Pulse Potential 550600 Inter Ofset 35 45 Pul Potential 300350 Slit Potential 15 25 Bias Potential 50250 Trap Offset 2035 Potential 4000 Trap Offset Potential 16 Reflector Potentia 1050 Endcap Potential 60 Detector Potential 2000 2100 Micro Sequence 51 Count Threshold 0 Accumulation Time 20 First Mass 100 00 Accumulation FNF Gain 0 Last Mass 2000 00 Accumulation Mass 2000_2000 Spray Potential ES AP1
60. t1 9 52 RT22 23 22 43min 12 3sec Precursor 731 Event3 Segment1 6 52 RT22 33min Precursor mjz 482 Event3 Segment1 6D 52 RT22 39 22 54min 8 5sec Precursor mjz 417 Event2 3 Segment1 6 MS2 RT22 50 22 64min 8 5sec Precursor mjz 512 Event2 3 Segment1 52 RT22 60 22 74min 8 5sec Precursor m z 527 Event2 3 Segment1 9 00 52 RT22 70 22 80min 6 1sec Precursor m z 462 Event2 Segment1 9 0 MS2 RT22 84 23 25min 24 6sec Precursor mjz 470 Event3 Segment1 6 52 RT22 91min Precursor m z 571 Event2 Segment1 9 52 RT22 95min Precursor miz 478 Event3 Segment1 9 Ms2 RT23 01 23 11min 6 1sec Precursor mjz 541 Event2 Segment1 a ee Target Sesment GxQuping MSMS Event 52 2916 2640 1 lt Precursor 548 Event2 Seent 52 RT2622min Precursar m z 542 Event4 Segment1 jnP m z 821 Eyent4 Segment1 TCS2 0 MassSpectrum MS2 Average 3min Precursor m z 542 Eyent2 Segment 6 78Bmin Precursor m z 575 Event4 Segment1 MS2 RT2711 2726min 89sec Precursor m z 821 Event2 Segment1 TIC
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