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RES-32XR3 Installation Manual - Configuration 1

1. LEDs Storage Power Power NIC1 NIC2 Overheat Power ON OFF Drives Fail Fail Fan Fail Button PS1 PS2 Left Power Right Power Supply Supply Rear Panel B i Wp d s AOAUONONONOOTONOTONNNI 2 STAT AAN HUTTE UUSREUUAETUAUEUEAELUAA Haars DADUA DINEE Ni i THEE n 1 0 Connectors F E m Dedicated LAN Wi 9 PS 2 Keyboard COM 1 Port VGA Port LAN 1 Port LAN 2 Port USB1 top Ore USBO bottom Gigabit Ethernet PS 2 Mouse Figure 1 5 RES 32XR3 System LEDs and I O Connectors Configuration 1 1 6 Themis Computer 1 Overview and Specifications System LEDs and I O Connectors Table 1 3 System LEDs LED Description Power e Indicates that the system is turned on Storage Drive e Indicates SAS SATA II Storage Drive activity pial NIC 1 Gb Ethernet e Indicates network activity on LAN 1 pa NIC2 Gb Ethernet e Indicates network activity on LAN 2 aos Overheat Fan Fail Normally OFF RED light when tem perature limits are ex ceeded e Warns that the system is exceeding specified temperature parameters The CPU overheat warning function must be enabled in the BIOS thus allowing the user to define an overheat temperature which when exceeded trig gers the overheat warning LED Symbol Rear Panel LED s Description N A LAN1 and LAN2 Each Ethernet port contains two LEDs e
2. 3399 WHE A SUPDOLU vaih eaa a Sa E E Ee aE ORAGES 3 24 3 3 10 Trusted Computing Available when a TPM device is detected 3 24 3 3 10 1 TCG TPM Trusted Platform Module Support 3 24 3 3 1 1 TIPMI Configuration soosiana diane eich ciate iste a Seen 3 25 3 3 11 1 IPMI Firmware Revision cs2cakeiccn eu tancanriiede nner 3 25 F312 Stat s f BMC arn e 0 secre e E A en 3 26 3 3 12 View BMC System Event Log 05 i5 ccssaiicrin coi ate aud 3 26 3 3 12 1 Cleat BMC System Event Log sscy ess cccvicssinceedsteceiss eictiauanrsctnss 3 26 3 313 Set LAN Configuration siessen conve al o E EE E 3 26 3 3 43 A Channel N mber nrernrnnonn aenur an 3 27 3 3 13 2 Channel Number Status s sseseeseesseessesseseessresseserssressessessresseese 3 27 33 133 IP Address Source eiii n nhe e arn i 3 27 3 3 13 4 BMC Watch Dog Timer Action 0 cecccecsseceseceseeeeeeeeeeenaeeees 3 27 3 3 14 Event Log Configuration stscei teases teil aie nieeo See newbs ie 3 28 33141 View Eyent Log le cces sated ta aca aiens dcsuteaeniooonann dene deans a eiaa 3 28 3 3 14 2 Mark all events as read sole sscc ances detiassoans dott ettnnsvareanelane aeoreeees 3 28 Boo CCAP CV EMU logni taka sasi en dee i ddd ahaa E a E 3 28 So LAA PCL Error Lop cscs siletaicsaedag no e ea a a tatoo esdods 3 28 3 3145 Memory ECC Error Log orrei caste eae vise elses ER 3 28 JA Sec rity Settings a2 asec anirien kenaii at e aT ES AE Ra ESA aaie Eiin 3 29 3 4 1 Supervisor Pa
3. South Bridge Configuration 3 3 3 17 USB Functions Select Enabled to use onboa rd USB connections The Op tions are Disabled and Enabled default 3 3 3 18 USB 2 0 Controller Available when the item USB Functions is disabled This feature displays the current USB controller used in the motherboard 3 3 3 19 Legacy USB Support Select Enabled to use Legacy USB devices If this item is set to Auto Legacy USB support will be automatically enabled if a legacy USB device is installed on the motherboard and vise versa The settings are Disabled Enabled and Auto default 3 3 3 20 Port 64 60 Emulation Select Enabled to enable 60h 64h emulation for complete USB keyboard support for operating systems that are not compatib le with USB devices The options are Enabled and Disabled default 3 3 4 IDE SATA Configuration When this submenu is selected the AMI BIOS automatically detects the presence of the IDE devices and displays the following items 3 3 4 1 SATA 1 Configuration If Compatible is selected it sets SATA 1 to legacy compatibility mode while select ing Enhanced sets SATA 1 to native SATA mode The options are Disabled Com patible and Enhanced default 3 3 4 2 Configure SATA 1 as This feature allows the user to select the drive type for SA TA 1 The options are IDE default RAID and AHCI When the option RAID is selected the item ICH RAID Code Base will appear When the option AHCTI is se lected the i
4. Themis Computer Index Multi Threading 3 8 N Noise 1 16 Noise baffle 6 Noise muffler 6 noise reduction 6 noise specification 7 16 Non Uniform Memory Access 3 24 Non Volatile Memory 3 17 NorthBridge Configuration Active State Power Management 3 12 DCA Prefetch Delay 3 2 DCA Technology 3 2 Intel VOAT 3 12 Intel VT d 3 12 IOH PCI E Max Payload Size 3 12 O Opening the RES 32XR3 Front Bezel 2 0 Operating temperature 1 2 Optional Remote On Off Switch D 1 Ordering the Remote On Off Switch D 2 Output Voltage 1 15 Overheat LED 7 P Packaging and Shipping 1 18 Packing Components E PCI cards 2 1 2 7 PCI PnP Configuration Boot Graphics Adapter Priority 3 18 Clear NVRAM 3 17 Load Onboard LAN1 Option ROM 3 18 Load Onboard LAN2 Option ROM 3 18 Load Onboard SAS Option ROM 3 18 Onboard LAN Options ROM Select 3 8 PCI Cache Size 3 17 PCI IDE BusMaster 3 17 PCI Latency Timer 3 17 PCI E Slots 1 7 x8 3 18 Plug amp Play OS 3 17 SR IOV Supported 3 17 Peripheral Support 2 PERR 3 28 pinouts Gigabit Ethernet LAN A 4 serial ports A 2 D 5 SVGA A 3 USB port A 2 PIO Mode Select Options 3 5 Plug amp Play 3 17 Plugging inandSecu ring the AC Power Cords 2 16 Port A and Port B D 3 POST 3 2 power button 4 button and LED 2 16 cord sockets 4 LED 2 17 power cords 2 16 power supply 1 2 2 1 installation 2 14 locking mechanism 2 3 Power Supply LED Behavior 1 8 Power Supply Module 8 PSM LED O
5. C 12 Themis Computer C Red Hat Enterprise Linux 5 Installation Installation Configure ethoO Advanced Micro Devices AMD 79c970 PCnet3s2 LANCE Hardware address 00 0C 29 42 45 96 F Use dynamic IP configuration DHCP Enable IPv4 support Enable IPv6 support fy Activate on boot Address Prefix Netmask X Cancel Jox Figure C 13 Edit Interface Pop Up Screen Click OK Step 14 Set your time zone by selecting the city closest to your computer s physical location Click on the map to zoom into a particular geographical region of the world see Figure C 14 on page C 14 From here there are two ways for you to select your time zone e Using your mouse click on the interactive map to select a specific city repre sented by a yellow dot A red X appears indicating your selection e You can also scroll through the list at the bottom of the screen to select your time zone Using your mouse click on a location to highlight your selection C 13 Themis Computer RES 12XR3 Installation Manual Configuration 7 Version 1 3 RED HAT ENTERPRISE LINUX 5 Please click into the map to choose a region America New_ York gt Easter Time System clock uses UTC GB Retease Notes Back a Next Figure C 14 Selecting Time Zone Click Next Step 15 Setting up a root account and password is one of the most important steps during your installation Your root account is s
6. Reset choose to install other D Engish iniae t stani languages itis possible to CI Enghtety ishippnes i change the default language O Engish gsp after tire installation ar igith eth alice ly Red Hat Linux can install and m HI support several languages To IO Engish Gimimas use more than ane Language on CI Esnimis Your yytiom choose specific C Famese Farse itlinds languages to be installed or O Fesi select all languages to Nave all Ir h meigum available languages installed lf z d Peete te Canala on the system C Peach pence Use the Reset butten te cancel Ra Feeney ears weriinuargy hornet alo etintyn f Iz Brem Dnne o m in SSS aS MO OaM OIM Figure C 4 Language Selection Once you select the appropriate language click Next to continue Step 5 Using your mouse select the correct layout type for example U S English for the keyboard you would prefer to use for the installation and as the system default see Figure C 5 on page C 5 Themis Computer C Red Hat Enterprise Linux 5 Installation Installation RED HAT ENTERPRISE LINUX 5 Qe Select the appropriate keyboard for the system Soventan Spanish Sweden Sanss french Swiss French latint Sss German Swiss German tating Tamil inscrpt Tamil Typewriters Turkish Ua Siler A US thteenational Ukrainian United Kingoom B Lammas notes oma Cone Figure C 5 Selecting Layout Typ
7. caution level since the CPU s Temperature Tolerance has been re ached or has been exceeded and may activate an overheat alarm The system may shut down if it continues for a long period to prevent damage to the CPU User intervention If the system buzzer and Overheat LED has activated take action immediately by checking the system fans chassis ventilation and room temperature to correct any problems 3 21 Themis Computer RES 32XR3 Installation Manual Configuration 1 Version 1 3 Notes 1 The CPU thermal technology that repor ts absolute temperatures Cel sius Fahrenheit has been upgraded to a more advanced feature by Intel in its newer processors The basic concept is each CPUis embedded by unique tem perature information that the moth erboard can read This Temperature Threshold or Temperature Tolerance has been assigned at the factory and is the baseline on which the motherboardtakes action during different CPU tem perature conditions i e by increasing Fan speed triggering the Overheat Alarm etc Since CPUs can have di fferent Temperature Tolerances the installed CPU can now send information to the motherboard what its Tem perature Tolerance is and not the other way around This results in better CPU thermal management Supermicro has leveraged this featur e by assigning a temperature status to certain thermal conditions in the pr ocessor Low Medium and High This makes
8. logging The options are Yes default and No 3 3 14 5 Memory ECC Error Log Use this option to enable ECC Memory Error logging The options are Yes default and No Themis Computer 3 BIOS Setup Utility 3 4 3 4 1 3 4 2 3 4 3 Security Settings The AMI BIOS provides a Supervisor a nd a User password If you use both pass words the Supervisor password must be set first BIOS SETUP UTILITY Change Sapyervisor Password Figure 3 3 Security Settings Supervisor Password This item indicates if a Supervisor password has been entered for the system Not Installed means a Supervisor password has not been used User Password This item indicates if a user passwor d has been entered forthe system Not Installed means that a user password has not been used Change Supervisor Password Select this feature and press lt Enter gt to access the submenu and then type in a new Supervisor Password Themis Computer 3 29 RES 32XR3 Installation Manual Configuration 1 Version 1 3 3 4 4 3 4 5 3 4 6 3 4 7 3 4 8 User Access Level Available when Supervisor Password is set as above The Options are Full Access View Only Limited and No Access e Full Access default This feature grants full User read and write access to the Setup Utility e View Only This feature allows the user to access the Setup Utility but the user is not allowed to change settings e Li
9. motherboard on the X8DTH 6F only X PCI Express 2 0 x8 slot 20 50 8 cm deep X Dual Power Supplies PCI Express 2 0 x8 slot PS1 PS2 Rear View PCI Express 2 0 x8 slot PCI Express 2 0 x8 slot Power Supply rs ati ares s AAAONOOAUAOOAIONA TAMANI TE E AC Power Socket UT ie 3 prong NEMA 15 n TTT i Tn ion gt Nd MNN zO ima i A i pisses Slot 7 PCI Express 2 0 x8 slot PCI Express 2 0 x8 slot Rear I O Panel see Figure 1 5 page 1 10 Note All PCI Express x8 slots are in X16 slots PCI Express 2 0 x8 slot Figure 1 3 External Features of RES 32XR3 Configuration 1 Front and Rear The RES 32XR3 front panel houses eight removable Storage Drive bays see Figure 1 3 In addition the front panel suppo rts a CD RW DVD ROM combo slim line drive and a 1 44 MB 3 5 floppy disk drive optional or a single 2 88 MB DA T drive optional Both motherboards support SA TA II drives but the X8DTH 6F motherboard also supports SAS 2 0 drives hence a combination of both SATA and SAS drives may be installed Drive requirements should be specified at the time the system is purchased Also included on the front panel is a system power ON OFF button and LEDs see Figure 1 5 page 1 6 The rear panel contains I O faceplates for seven PCI cards of which only six are used graphics RAID NIC etc two AC power supplies with latch locks and power cord sockets and all I O connectors Figure 1 5 on page 1 6
10. 1 Version 1 3 xxiv The 3RU high 5 25 RES 32XR3 has been designed to fit into a standard 19 rack and is provided with rack mount brackets with handles Optional rack mount slides are also available The RES 32XR3 is rugged enough to withstand extreme shock up to 35G temperature and EMI as that associated with such demanding markets as the military aerospace and telecommunications industries Intel Processors supported by RES 32XR3 include either Two Intel 5500 Series Xeon Quad Core CPUs or e Two Intel 5600 Series Xeon Quad Six Core CPUs which operate at a QPI Quick Path Interconnect up to 6 4 GT s and support a total memory capacity of 192 GigaBytes 12 16 GB DIMMs using 1066 MHz DDR3 ECC Registered memory modules Changing memory speed 1333MHz and 800 MHz is supported by lower capacity DIMMs hence lower total memory capacity RES 32XR3 is based on the functionality and capability of the following Intel Chip sets e Intel 5520 Tylersburg chipset e ICHIOR 2x IOH 36D An overview of RES 32XR3 design and specifications is given in Chapter 1 Over view and Specifications of this manual This manual is intended for an experien ced system administrator with a knowledge of both networking and high speed server systems Website Information Themis Computer corporate and product information may be accessed on the World Wide Web by browsing the website http www themis com Your Comments are
11. 15 Table 3 2 DMA Mode Select Options secsccccscadyccaccasbeaateduceee ee edastvaeaadsenscarneiaGebaees 3 16 Table A 1 PS 2 Keyboard Mouse Pinout and Signal Descriptions cceeceeeeeeteees A 1 Table A 2 USB Connector Pinout Signal Descriptions 000 000 ecccecceeeeeeceeteceteeeeeeeenees A 2 Table A 3 COM 1 Serial Connector Pinout Signal Descriptions 0 ceeeeeeeeeeeee A 2 Table A 4 RES 32XR3 SVGA Connector Pin Signals ccecceeceeesceeseeeteceeeeeeeeenseees A 3 Table A 5 RJ45 Ethernet Pinout Signals 2 ssclia5u0s octet st bs cet ast ores tane uta es teags A 4 Table E 1 Dual USB Connector Pinout Signal Descriptions J10 eee eeeeeeteeees D 4 Table E 2 COM1 Serial Connector Pinout Signal Descriptions J8 and J9 D 5 Table E 3 Stereo Audio Out Connector Pinout Signal Descriptions J1 0 D 6 Themis Computer Version 1 3 Preface This document entitled RES 32XR3_ Installation Manual Configuration 1 pro vides instructions on how to install configure power up and boot the Themis Rug ged Enterprise Server RES 32XR3 Configuration 1 see Figure 1 below which is based on two 64 bit Intel 5500 Series Xeon Quad Dual Core CPUs or two Intel 5600 Series Xeon Quad Six Core CPUs RES 32XR3 Configuration 1 supports one of two motherboards in a 20 deep chas sis e SuperMicro X8DTH iF e SuperMicro X8DTH 6F a matrix describing 20 deep chassis configurations is given in Table 1 pa
12. 2 16 Figure 3 1 Main BIOS Setup Screen vjascescacssasiaaphsistasaesstapbivaisesvamadecnamacasardessediaglion 3 3 Figure 3 2 Advanced Settings iriteso eia aiana aE A OAE TERESA 3 5 Figure 3 3 Security Settings sesseesesessesseseresressessresresseestesresseeseesrrsstesreseessessesrtssresseest 3 29 Figute3 4 gt B t Settings ianen E E a a a antes iiaia 3 31 Figur 3 5 Exit Optlons ca asrctseccs atin side Ans Gains esta aes a Gad 3 33 Figure 3 6 AMI FLSH HyperTerminal 0 0 cece ceccceceeeceeneeceseceeeeeeeeeeseeesaeenteeeees 3 38 Figure 3 7 ROM File Extraction il Sioa SS eg st oh aed Sood Sa Soe ag cota se ala 3 38 Figure 5 8 Flash Recovery isso esto Sealus a sveiacsa seas taecays a a a Murase 3 39 Figure A 1 USB Connector PinOlsegccat sauce neestd nates woncd tc ews seed hela dd ete ta ee A 2 Figure A 2 COM 1 Serial Connector Pinout cece cccccecesscecesececesececeeceesseeeesseeeesseeees A 2 Figure A 3 RES 32XR3 SVGA Connector Pinout 00 eee eccceesceceteceneeeeeeeeseeesaeeneensees A 3 Figure A 4 Ethernet Connector Type RJ45 ooo ccceccceceseceeeeeeseeceaeceseeneeeenseeesaeeneenanes A 4 Figure B 1 Screw Locations for Rack Mount Slides 0 ccccccessccssssecssseeceseeecsseeeesseeeees B 1 Figure B 2 RES 32XR3 Rack Mount Slide Installation eee eeceeseeeteceteeeeeeeeaees B 3 Figure C 1 Power On after Linux DVD is Inserted into Drive eee eeceeeeteeeeeeeeees C 2 Figure C 2 Skip Key sachet e e E adsense C 2 Figure 3 W
13. 3 5 Quiet Boot 3 5 Restore on AC Power Loss 3 7 Wait For F1 if Error 3 6 Watch Dog Function 3 6 Boot Sector Recovery from a Serial Port Requirements 3 36 Boot Settings Screen 3 3 C CD RW DVD ROM drive 1 2 Chipset 7 2 COM serial port header 1 9 components major 1 5 Configuration 1 2 1 Configuration system 2 17 Console Redirection 3 19 CPU 1 Temperature CPU 2 Temperature High 3 21 Low 3 21 Medium 3 21 CPU Bridge Configuration Bank Interleave 3 11 Channel Interleave 3 11 Demand Scrubbing 3 11 Memory Frequency 3 10 Memory Mode 3 11 Patrol Scrubbing 3 11 QPI Frequency 3 10 QPI LOs and L1 3 10 QPI Links Speed 3 10 Throttling Closed Loop 3 11 CPU Overheat Alarm Default Alarm 3 21 Early Alarm 3 21 CPU System Temperature Fan Speed Control Modes 3 22 Fan Speed Readings 3 22 System Temperature 3 22 Themis Computer Index Voltage Readings 3 23 D DAT drive 1 4 DDR3 3 10 DDR3 Frequency 3 0 Dimensions chassis 2 Direct Cache Access 3 12 DMA Mode Select Options 3 16 DVI connector 2 17 Dynamic Host Configuration Protocol 3 27 E E 3 Instructions for Re Packing E 2 ECC SDRAM 1 2 EIST 3 9 Electrical Specifications 17 15 Electromagnetic Interference 3 7 Electrostatic Discharge 1 16 Energy Saving ES 3 23 Environmental Specifications 1 16 error correction 3 11 ESD grounding techniques 2 7 protected mat 2 7 Ethernet A 4 Event Log Configuration Clear event log 3 28 Mark all events as rea
14. 333 Serial Port Mod ssonissiiisrsiiars esistere titien 3 19 JITA FOW Control enuiar iis n a a a Sea E 3 19 3 3 7 5 Redirection After BIOS POST sscssdscstesecinncetasccpeceseccrssbiecdeeccses 3 19 3 3 1 6 Terminal Type isn eeen a a as 3 20 3 3 7 7 VT UTF8 Combo Key Support ssssssssessesssessessesseessessessssresseese 3 20 3 3 7 8 Sredir Memory Display Delay sesssssssssssesssessesessseessesessrssseesee 3 20 3 3 8 Hardware Health Monitor s ss sessssessesessssessesseserssessesrrssressessessressessessees 3 20 3 3 8 1 CPU Overheat Alarm sssssesoessssseessessessessseesesresseeseesessresseeseese 3 20 3 3 8 2 CPU 1 Temperature CPU 2 Temperature System Temperatur roneiren na E a R RRE 3 21 3 3 8 3 Voltage Readings s sssessseessessssseessessrsseossessessresseeseesessresseesees 3 23 3 3 9 ACPI Configuration grer enn E a es E EE E E 3 23 3 3 9 1 ACPLAWAaTE O S aeee e A eat eet claa alles 3 23 3 3 9 2 ACPI Version atures ceceseiscenirionouniiirnieni inani 3 23 3 3 9 37 PS2 KB MS Wake UP ti Aunucsccstaakinea ced ules iaeneaseed 3 23 3 3 9 4 ACPI APIC Support iste vecece i hedacec ables siedousteecelsPoaeanstete 3 23 3 3 9 5 APIC ACPTSCLIRG 223 tcendei ona ich a IERTA 3 23 3 3 9 6 Headless Mode ereire a ar aa E EEE RAARO 3 24 3 3 9 7 High Performance Event Timer siccunassessn aceon nina 3 24 3 3 9 9 NUMA SUD PORE 2251s cose ee a EEE E a E 3 24 xi Themis Computer RES 32XR3 Installation Manual Configuration 1 Version 1 3
15. LAN 2 IPMI Dedicated LAN Port e Standard RJ45 connector to attach a dedicated IPMI LAN line 1 9 Themis Computer RES 32XR3 Installation Manual Configuration 1 Version 1 3 1 3 1 10 1 3 1 Chipset Overview Built upon the functionality and capabili ty of the Intel 5520 platform RES 32XR3 Configuration 1 provides the performance e required for dual processor based high end systems including optimal configuration options for communications high end CAD systems or database applications Configuration 1 supports up to two quad core 5500 series or two quad six core 5600 series intel 64 bit Xeon processors with a QPI up to 6 4 GT s The Intel chipset consists of e the Intel 5520 Tylersburg chipset and e the ICHIOR IOH 36D With the Intel QuickPath Interconnect QP I controller built in the processor the 5500 Series Processor platform is the first dual processing platform to offer the next generation point to point system interconn ect interface replacing the current Front Side Bus Technology providing substantial system pe rformance enhancement by utilizing serial link interconn ections allowing increased bandwidth and scalability The IOH connects to each processor through an independent QuickPath Interconnect link Each link consists of 20 pairs of unidi rectional differential lanes for transmis sion and receiving in addition to a differential forwarded clock A full width Quick Path int
16. MB s S M A R T For Storage Drives Self Monitoring Analysis and Reporting Technology SMART can help predict impending drive failures Select Auto to allow the AMI BIOS to automa tically detect Storage Drive support Select Disabled to prevent the AMI BIOS from using the S M A R T Select Enabled to allow the AMI BIOS to use the S M A R T to sup port the storage drive The options are Disabled Enabled and Auto default Themis Computer 3 BIOS Setup Utility 3 3 5 3 3 5 1 3 3 5 2 3 3 5 3 3 3 5 4 3 3 5 5 3 3 5 6 Advanced Setup Configurations 32 Bit Data Transfer Select Enable to allow the function of 32 bit IDE data transfer The options are Enabled default and Disabled PCI PnP Configuration Clear NVRAM This feature clears the NVRAM Non Volatile Memory used for Flash ROM during system boot The options are No default and Yes Plug amp Play OS Selecting Yes allows the OS to configure Plug amp Play devices This is not required for system boot if your syst em has an OS that suppor ts Plug amp Play Select No default to allow the AMI BIOS to configure all devices in the system PCI Latency Timer This feature sets the latency Timer of each PCI device installed on a PCI bus Select 64 to set the PCI latency to 64 PCI clock cycles The options are 32 64 default 96 128 160 192 224 and 248 PCI Cache Size Use this feature to select PCI Cache size The option
17. The options are Auto default 0 1 2 3 and 4 Select Auto to allow the AMI BIOS to automatically detect the PIO mode Use this value if the IDE storage drive support cannot be determined Select 0 4 to allow the AMI BIOS to use PIO mode 0 4 It has a data transfer rate of 3 3 MB s 16 6 MB s See Table 3 1 PIO Mode Select Options below Table 3 1 PIO Mode Select Options Option Selected PIO Mode Max Transfer Rate 0 PIO Mode 0 3 3 MB s 1 PIO Mode 1 5 2 MB s 2 PIO Mode 2 8 3 MB s 3 PIO Mode 3 11 1 MB s 4 PIO Mode 4 16 6 MB s 3 15 Themis Computer RES 32XR3 Installation Manual Configuration 1 Version 1 3 3 16 DMA Mode Select Auto to allow the BIOS to automatically detect IDE DMA mod e when the IDE disk drive support cannot be determined The options are Auto default SWD MAn MWDMAn and UDMAn See Table 3 2 DMA Mode Select Options below Table 3 2 DMA Mode Select Options Option Selected DMA Mode Max Transfer Rate SWDMA 0 Single Word DMA 0 2 1 MB s SWDMA 1 Single Word DMA 1 4 2 MB s SWDMA 2 Single Word DMA 2 8 3 MB s MWDMA 0 Multi Word DMA 0 4 2 MB s MWDMA 1 Multi Word DMA 1 13 3 MB s MWDMA 2 Multi Word DMA 2 16 6 MB s UDMA 0 Ultra DMA 0 16 6 MB s UDMA 1 Ultra DMA 1 25 MB s UDMA 2 Ultra DMA 2 33 3 MB s UDMA 3 Ultra DMA 3 44 4 MB s UDMA 4 Ultra DMA 4 66 6 MB s UDMA 5 Ultra DMA 5 100 MB s UDMA 6 Ultra DMA 6 133
18. Third IDE Master and Fourth IDE Master cee PCI PnP Configuration vcueisictisccennoveteuccave usttade ce sagas anceincabatatoees acta Themis Computer Table of Contents S30 Clear NVRAM a Zshccs leks sp a E R AE A Ra 3 17 33 5 gt Plug amp Play OS ane aaea nae n a aT 3 17 3 0007 PCI Latency Timer eorsenana a a a aie 3 17 33 34 PCl Cache Size naaa na a ariaa 3 17 3 3 5 5 PCLIDE BusSMAaster liegien nnan ai 3 17 3 3 5 6 SR IOV Supported aauc cas sec cued ccssceceualeeecteoncdteaseneaadadaeeeuapeaensiens 3 17 Be RENAE SIOS ISTRE iera a retest a e e ae 3 18 3 3 5 8 Onboard LAN Options ROM Select ss nosssseseeseesesssessesersseesee 3 18 3 3 5 9 Load Onboard LAN1 Option ROM Load Onboard WAN Option ROM C5 inn oe AO Verh ei eal alas 3 18 3 3 5 10 Load Onboard SAS Option ROM 0 cceeceeceeseceeeeeeeeeeteeenneeees 3 18 3 3 5 11 Boot Graphics Adapter Priority 0 ccc cececceceseceeeeeeeeeeteeenseeees 3 18 3 3 6 Super IO Device Configuration occ 0 ssc saesacesgioeacesestceassavsedauteatecouaaeess 3 18 3 3 6 1 Serial Portl Address sts a eso ce ceencec cas ueracaasaseseenecetadeeceausene Gans 3 18 33 02 SetialPort2 Attrib te cscs Seiten eaa a o decane 3 19 3 3 7 Remote Access Configuration s ccc sccacotvechast aged seshencduandeceansahaerenanes acer 3 19 Dios isl Remote ACCESS ae aca dssseua tee E sg seas AAE neonates 3 19 332 Serial Port NUMBEE f a2iesc240cc tact dtdaacsevueiastsayiiast r a Eaa lace 3 19
19. This item displays the status of TPM Enabled Disabled state TPM Owner Status This item displays the status of TPM Ownership IPMI Configuration Intelligent Platform Management Interface IPMI is a set of common interfaces that IT administrators can use to monitor system health and to manage the system as a whole from a remote site For more info rmation on the IPMI specifications please visit Intel s website at www intel com IPMI Firmware Revision This item displays the current IPMI firmware revision 3 25 Themis Computer RES 32XR3 Installation Manual Configuration 1 Version 1 3 3 3 11 2 Status of BMC Baseboard Management Controller BMC manages the interface between system management software and platform hardware This is an informational feature which returns the status code of the BMC micro controller 3 3 12 View BMC System Event Log This feature displays the BMC System Ev ent Log SEL It shows the total number of entries of BMC System Ev ents To view an event se lect an Entry Number and pressing lt Enter gt to display the information as shown in the screen e Total Number of Entries e SEL Entry Number e SEL Record ID e SEL Record Type e Timestamp Generator ID e Event Message Format Version e Event Sensor Type e Event Sensor Number e Event Dir Type e Event Data 3 3 12 1 Clear BMC System Event Log Select OK and press the lt Enter gt key to clear the BMC system log Select Cancel t
20. Welcome We are interested in improving our documentation and welcome your comments and suggestions You can email your comments tous at docfeedback themis com Please include the document part number in the subject line of your email Themis Computer Preface Notes Cautions Warnings and Sidebars The following icons and formatted text are included in this document for the reasons described Note A note provides additional information concerning the procedure or action being described the equipment This may involve but is not restricted to heavy equipment or 1 Caution A caution describes a procedure or action that may result in damage to sharp objects To reduce the risk follow the instructions accompanying this symbol to the operator To reduce the risk follow the instructions accompanying this sym 5 Warning A warning describes a procedure or action that may cause injury or death bol Sidebar A sidebar adds detail to the section within which it is placed but is not absolutely vital to the description or procedure of the section XXV Themis Computer RES 32XR3 Installation Manual Configuration 1 Version 1 3 xxvi Themis Computer General Section Chapter Overview and Specifications 1 1 Overview The RES 32XR3 Configuration 1 see Figure 1 1 below a block diagram is given in Figure 1 2 page 1 3 is a rack mounted hi gh performance system desi
21. a P Cl Express slot see Figure 2 5 and connect a multiscan monitor to the SVGA or DVI connector 3 Attach a PS 2 keyboard and mouse to the appropriate connectors on the rear 1 O panel of the RES 32XR3 see Figure 1 5 on page 1 6 4 Turn the system on see previous section 2 3 3 2 Linux Installation The subject of installing the Linux operating system onto the RES 32XR3 is detailed in Appendix C Red Hat Enterprise Linux 5 Installation 2 3 4 Turning the System Off Caution Before turning your system off make sure to save all open files properly close applications and broadcast a warning to all users on any active networks 1 To turn the RES 32XR3 power of f press and hold the system power on of f button see Figure 2 15 page 2 16 for at least four 4 seconds This will shut down the system and turn of the POWER LED as well as the rear power supply module LED As an alternative a modern opera ting system Windows 9x or newer and Linux for example can turn of f the system after a graceful OS software shutdown Themis Computer RES 32XR3 Installation Manual Configuration 1 Version 1 3 2 18 Themis Computer Installation Section Chapter BIOS Setup Utility 3 1 3 1 1 Introduction This chapter de scribes the AMI BIOS Setup Utility for the RES 32XR3 mother boards Note For BIOS recovery please refer to the AMI BIOS Recovery posted at http www supermicro com s
22. chassis is given in Table 3 page xxii This chassis design makes it more convenient to install cables to the system and demands no access to the rear of the chassis except to replace a fan Figure 2 shows the front view of a standard rear I O RES 32 chassis Figure 3 on page xxiii shows the rear view Figure 4 shows the front view of a front I O RES 32 chassis Figure 5 shows the rear view Table 3 Front I O 16 Deep Chassis Manual Matrix CPU Mother Soc RES 32XR3 FIO Manual P N RES 22XR3 FIO Manual P N board kets X8DAH F 2 117611 024 X8DTU F 2 117664 024 Naming Key X8uvwxyz System RES x2XR3S and RES x1XR3 where X 3 2 0r1 RES 32XR3 FlO motherboard X8DAH F supports both audio and video however the naming key does not contain a T in the title u D Double CPU sockets S Single CPU socket v A Sound chip no graphics chip T Graphics chip no sound chip w Not applicable SATA only SAS 1 0 SAS 2 0 y LN4 Extra gigabit Ethernet controller for two extra ports z F IPMI blank No IPMI i 3 6 si LIN ik AA ASN i j amp Q Jj Bi EH Figure 2 Front View of a Standard Rear l O RES 32 Chassis Doors Removed Themis Computer Preface I T Figure 4 Front View of a Front l O RES 32 Chassis Figure 5 Rear View of a Front l O RES 32 Chassis xxiii Themis Computer RES 32XR3 Installation Manual Configuration
23. drive 1 4 120 mm fan housing 2 240 pin DIMM sockets 1 2 3RU form factor 1 2 5500 5600 Series Xeon processors 1 1 5520 chipset 7 10 A AC power cord 8 2 16 power LED 2 17 power socket 2 16 power supply 1 4 accessory kit 8 ACPI Configuration ACPI APIC Support 3 23 ACPI Aware O S 3 23 ACPI Version Features 3 23 APIC ACPI SCI IRQ 3 23 Headless Mode 3 24 High Performance Event Timer 3 24 NUMA Support 3 24 PS2 KB MS Wake Up 3 23 WHEA Support 3 24 Adaptec s SATA RAID 3 14 Advanced Settings Screen 3 5 AMIBIOS 3 1 AMI FLSH HyperTerminal Screen 3 38 AMIBIOS flash chip 3 35 antistatic bags 2 1 antistatic wrist strap 2 ATA 133 IDE controller card 3 15 audio connectors D 3 Audio USB Serial Port Custom Module D COMI Serial Connector Pinout D 5 COM1 Serial Connector Pinout Signal Index B Descriptions D 5 header connectors D 3 I O cables D 2 I O headers D 2 installation D 2 ordering D 7 PCB and Carrier D rear audio connectors D 3 Stereo Audio Connector Pinout D 6 Stereo Audio Out Connector Pinout Signal Descriptions D 6 Stereo Audio Out jack D 6 USB Connector Pinout Signal Descriptions D 4 USB Connector Pinouts D 4 Baseboard Management Controller 3 26 bezel 2 9 BIOS Setup Utility 3 Advanced Setup Configurations 3 5 ACPI Configuration 3 23 Advanced Chipset Control 3 10 CPU Bridge Configuration 3 10 NorthBridge Configuration 3 2 South Bridge Configuration 3 13 Boot Features 3 5 Ev
24. except X8DTN and X8DAH F which are 13 68 W x 13 L XX Themis Computer Preface Table 2 RES x2XR3S RES x1XR3 17 Deep Chassis Manual Matrix Mother ee RES 32XR3S RES 22XR3S RES 12XR3S RES 31XR3 RES 21XR3 RES 11XR3 board kets Manual P N Manual P N Manual P N Manual P N Manual P N Manual P N X8DTL 6F 2 117408 024 117412 024 117416 024 X8DTL 6 X8DTL 3F 2 117409 024 117413 024 117417 024 X8DTL 3 eee 2 117410 024 117414 024 117418 024 X8DTL i oe 2 117411 024 117415 024 117419 024 X8DAL i X8SAX 1 117420 024 117421 024 X8ST3 F 1 117385 024 117422 024 X8STE ee X8STi carted 1 118188 024 117423 024 X8STi LN4 X8STi 3F Naming Key X8uvwxyz System RES x2XR3S and RES x1XR3 where x 3 2 or 1 u D Double CPU sockets S Single CPU socket v A Sound chip no graphics chip T Graphics chip no sound chip w Not applicable x SATA only 3 SAS 1 0 6 SAS 2 0 y LN4 Extra gigabit Ethernet controller for two extra ports z F IPMI blank No IPMI a tThe 17 deep RES XR3 chassis actually measures 17 07 deep but for simplicity will continue to be referred to as being 17 deep through out these manuals xxi Themis Computer RES 32XR3 Installation Manual Configuration 1 Version 1 3 xxii A matrix describing RES chassis that are configured for front I O connector and front PCI card access in a 16
25. handle hardware errors on Windows platforms in order to reduce system crashes and to enhance system recovery and health monitoring The default setting is Enabled Trusted Computing Available when a TPM device is detected 3 3 10 1 TCG TPM Trusted Platform Module Support Select Yes on this item and enable the TPM ju mper on the motherboard to enable TCG TPM 1 1 1 2 TPM support in order to improve data inte grity and network security The options are No default and Yes If this feature is set to Y es the fol lowing items will display Themis Computer 3 BIOS Setup Utility 3 3 11 3 3 11 1 Advanced Setup Configurations Indicate Physical Select Yes for a TPM device to be detected by the system at each system boot The options are Yes and No default TPM Deactivated Select Set to activate a TPM device at bootup Select Clear to deactivate a TPM device The options are Set Clear and Don t Change default TPM Owner Select Enable Install to set up a TPM ownership Select Clear to void a TPM owner ship Select Disable Install to disable TPM ownership setup support The options are Don t Change default Enable Install Disable Install and Clear Execute TPM Command Select Enabled to allow the user to change executable TPM commands and TPM set tings Select Don t Change to keep the current TPM settings The options are Don t Change default Enabled and Disabled TPM Enable Disable Status
26. it easier for the user to unde rstand the CPU s temperature status rather than by just simply seeing a temperature reading i e 250C The information provided above is for your reference only For more information on thermal management please refer to Intel s Web site at www Intel com 2 To avoid possible overheating be sure to provide adequate airflow to the sys tem and regularly check fans and chassis ventilation for blockage System Temperature The system temperature will be displayed in degrees in Celsius and Fahrenheit as it is detected by the BIOS Fan Speed Readings This feature displays the fan speed readings from Fan1 through Fan8 Fan Speed Control Modes This feature allows the user to decide how the system controls the speeds of the onboard fans The CPU temper ature and the fan speed ar e correlative When the CPU on die temperature increases the fan speed will also increase for effective sys tem cooling Select Full Speed FS to allow the onboard fans to run at full speed for maximum cooling The FS setting is recommended for special system configuration or debugging Select Performance PF for better system cooling The PF setting is recommended for high power consuming and high density systems Select Bal anced BL for the onboard fans to run at aspeed that will balance the needs between Themis Computer 3 BIOS Setup Utility 3 3 8 3 3 3 9 3 3 9 1 3 3 9 2 3 3 9 3
27. the RES 32XR3 Figure B 2 RES 32XR3 Rack Mount Slide Installation B 3 Themis Computer RES 32XR3 Installation Manual Configuration 1 Version 1 3 B 4 Themis Computer Appendix Red Hat Enterprise Linux 5 Installation C 1 Introduction Welcome to the Red Hat Enterprise Linux Installation Guide This guide contains useful information to assist you during th e installation of Red Hat Enterprise Linux via DVD device From fundamental concepts such as installation preparation to the step by step installation procedure C2 Installation Step 1 Insert the Redhat Enterprise Linux 5 DVD and Power on the system you will see the first installation screen wi th a boot prompt pres s ENTER to begin installation see Figure C 1 on page C 2 C 1 Themis Computer RES 12XR3 Installation Manual Configuration 7 Version 1 3 RED HAT ENTERPRISE LINUX 5 To install or upgrade in graphical mode press the To install or upgrade in text mode type Use the function keys listed below for more information Fi Main F2 Options F3 General F4 Kernel F5 Rescue Figure C 1 Power On after Linux DVD is Inserted into Drive Step 2 Press the tab key to move focus to the Skip key then press Enter key to Continue see Figure C 2 Bed Hat Enterprise To begin testing the CD media before installation press OK Choose Skip to skip the media test and start the Installat
28. to Full Speed This selects the desired QPI frequency The options are Auto default 4 800 GT 5 866GT 6 400 GT QPI LOs and L1 This enables the QPI powe r state to low power LOs and L1 are automatically selected by the motherboard The options are Disabled default and Enabled Memory Frequency This feature forces a DDR3 to runata frequency other than wh at the system has detected Select Force SPD Serial Presence Detect to force the memory to run at a frequency based on the SPD S tandard Table The available options are Auto default Force DDR 800 Force DDR 1066 Force DDR 1333 and Force SPD Themis Computer 3 BIOS Setup Utility 3 3 3 5 3 3 3 6 3 3 3 7 3 3 3 8 3 3 3 9 Advanced Setup Configurations Memory Mode The options are Independent default Channel Mirror Lockstep and Sparing e Independent All DIMMs are available to the operating system e Channel Mirror The motherboard maintains two identical copies of all data stored in channel 1 and 2 memory for redundancy e Lockstep The motherboard uses two areas of memory to run the same set of operations in parallel e Sparing A preset threshold of correctable errors is used to trigger fail over The spare memory is put online and used as active memory in place of the failed memory Demand Scrubbing A memory error correction scheme where the Processor writes corrected data back into the memory block from where it was read b
29. to install a memory module Storage Drive drive PCI card 120 mm fan power supply and lithium battery e Rack mount brackets and slides e How to turn the RES 32XR3 on and off 2 1 Installation Procedures components Wear an antistatic wrist strap and use an ESD protected mat Store ESD sensitive components in antistatic bags before placing them on any surface Handle all IC cards by the front panel or edges only t Caution Use industry standard ESD grounding techniques when handling all To install or replace a Storage Drive fan or power supply skip the next section and proceed directly to page 2 9 page 2 12 or page 2 13 respectively Replacement of motherboard components requires removal of the protective cover 2 1 1 Remove Protective Top Cover To access a motherboard component open the RES 32XR3 as follows Themis Computer RES 32XR3 Installation Manual Configuration 1 Version 1 3 1 Loosen the two captive Phillips scravs holding the protective top access cover to the rear of the RES 32XR3 chassis see A Figure 2 1 2 Both the front and sides of the cover have flat hooks or tabs underneath that fit under slots on the chassis top edges see B Figure 2 1 Remove the cover by sliding it toward the rear until it is free of these chassis slots 3 Store the cover in a safe place until it is replaced Rear View TTL ELLAELL an A Loosen the 2 captive access cover screws Chassis slot C
30. you ll need to use a third party boot loader such as Partition Magic or Microsoft s TLDR Unless you want to set up a Boot Loader Password or Configure Advanced Boot Loader Options see Figure C 10 on page C 10 C 9 Themis Computer RES 12XR3 Installation Manual Configuration 7 Version 1 3 C 10 RED HAT ENTERPRISE LINUX 5 The GRUB boot loader will be Installed on devisda No hoot loader will be installed You can configure the boot loader to boot other operating systems it will allow you to select an operating system to Boot from the list Tb add additional operating Systems which are not automatically detected click Add To change the operating system booted by default select Default by the desired operating system Defauit Labet Device Add Red Hat Enterprise Unux Server Mev VoiGroup00 Logvel00 Ealt Qelete A boot loader password prevents users from changing options passed to the kernel For greater system security it 15 recommended that you set a password Use a boot loader password Contigure advanced boot loader options B Release Notes Back a gt Next Figure C 10 Setting Up Boot Loader To configure more advanced boot loader options such as changing the drive order or passing options to the kernel be sure Configure advanced boot loader options is selected before clicking Next Step 11 Now that you have chosen which boot loader to install you can also deter mine where yo
31. 0 3 Using the depth of the e quipment rack adjust and attach the front and rear slide brackets to the outside slide section using the screws washers and nuts provided with the slide kit 4 With all slide brackets securely attached to both the right and left outside slide sections install both sections to the inside right and inside left of a 19 rack with two bolts per bracket making sure there is adequate room for the 3 RU height 5 25 of a RES 32XR3 system 5 Carefully insert the RES 32XR3 system into the 19 rack so that the inside slides on both sides of the chassis travelsmoothly into the channels of the out side slide sections Push the system into the rack until the mounting brackets on the front of the chassis are flush with the front of the rack 6 Secure the RES 32XR3 system to the 19 rack with two bolts on each side B 2 Themis Computer B Wide Rack Mount Slide Installation Outside slide section C Attach the rear long slide bracket to the outside slide section with screws washers and nuts included in slide kit B Attach the front short slide bracket to the outside slide section with screws washers and nuts included in slide kit A Attach both inside slide sections to the left and right sides of the RES 32XR8 chassis with 8 32 screws included in slide kit Note Graphic shown above is for slide placement only chassis shown is not an accurate representation of
32. 1 4 Themis Computer 1 Overview and Specifications Overview Major features of the RES 32XR3 are described in Table 1 2 Major internal compo nents can be seen in the open top view cover removed of Figure 1 4 below Power Supply 1 of 2 Air Flow Deflector pply 12 DIMM Memory Modules and 2 CPUs underneath Rear I O Slots 1 to 7 a ra ra WA mascara gt 7 a ek a PCI Slot 1 PCI Express 2 0 x8 2 PCI Express 2 0 x8 3 PCI Express 2 0 x8 4 PCI Express 2 0 x8 5 PCI Express 2 0 x8 6 PCI Express 2 0 x8 7 PCI Express 2 0 x8 Note All x8 PCI Express slots are in x16 slots PCI Card Retainer Bracket TU 5 tog 1 EELDA LEEENA Lithium Battery 120 mm Fan 1 of 2 Front ff CD DVD N Storage Drive 1 of 8 Combo Drive Housing Figure 1 4 Major Components of RES 32XR3 Configuration 1 Open Top View 1 5 Themis Computer RES 32XR3 Installation Manual Configuration 1 Version 1 3 1 2 System LEDs and I O Connectors All RES 32XR3 system LEDs are located on the front panel see A Figure 1 5 all T O connectors are located on the rear panel see B Figure 1 5 LEDs are describedin Table 1 3 on page 1 7 I O conne ctors are described in Table 1 5 page 1 9 Front Panel Doors Removed A memen wunnannananeney OOODONODAODODODOODOOODDMNN a _ AMT RT HUA WUNVONDENONINOT WENO N z SEE PSST i i ii E IEI aa A A N Dimes f f L_ Os S eeh v
33. 1 7 page 1 17 and remove the baf fle Rear Sound Baffle Rear Rear Left Side Right Side BS lt B BP lt B Figure 1 7 RES 22XR3 with Rear Sound Baffle Installed Rear View Rear Access Accessing the I O connectors and PC I card I O on the rear of the RES 32XR3 requires opening the rear sound baffle door To do this loosen the four 4 captive knurled Phillips screws A holding the baffle door to the chassis see A in Figure 1 7 and swing the door downward away fr om the chassis exposing the rear connectors and PCI cards Removing the protective top cover for acces s to the interior requires that the rear sound baffle be totally removed this can be done with the baffle door closed To do this five 5 M3x4 flathead Phillips screws B must be removed two on each side of the baffle and one captive in the middle on the top see Figure 1 7 After removing the rear baffle the top cover can be removed as described in Section 2 1 2 Memory Modules on page 2 3 Chapter 2 Installation and Operation 1 17 Themis Computer RES 32XR3 Installation Manual Configuration 1 Version 1 3 1 9 Packaging and Shipping The RES 32XR3 is packaged in a reusable shipping container Approximate weight of an empty container and two AC power cords is 8 8 pounds 4 kg The approximate weight ofa RES 32XR3 loaded with eight Storage Drives six PCI cards a CD RW DVD ROM drive and two power supplies is under 42
34. 3 3 9 4 3 3 9 5 Advanced Setup Configurations system cooling and power sa ving The BL setting is re commended for regular sys tems with nor mal hardware configurations Select Energy Saving ES for best power efficiency and maximum quietness The Options are Full Speed FS Perfor mance PF Balanced BL and Energy Saving ES default Voltage Readings The following voltage readings will be displayed CPU1 Vcore CPU2 Vcore CPU Vtt CPU2 Vtt C PU DIMM CPU2 DIMM 1 1V 1 5V 1 8V 3 3V 12V 5V 3 3 Vsb and VBAT ACPI Configuration Use this feature to configure Advanced Configuration and Power Interface ACPI power management settings for your system ACPI Aware O S Enable ACPI support if it is supported by the OS to control ACPI through the Oper ating System Otherwise disable this feature The options are Yes default and No ACPI Version Features The options are ACPI v1 0 ACPI v2 0 default and ACPI v3 0 Please refer to ACPI s website for further explanation http www acp1 info PS2 KB MS Wake Up Select Enable to wake up the system using either th e PS2 keyboard or mouse if equipped when the system is in S3 Sleep or S4 Hibernate state The options are Enabled and Disabled default ACPI APIC Support Select Enabled to include the ACPI APIC Table Pointer in the RSDT Root System Description Table pointer list The options are Enabled default and Disabled APIC ACPI SCI IRQ When thi
35. 77 80 Fax 33 476 14 77 89 Copyright 2010 Themis Computer Inc ALL RIGHTS RESERVED No part of this publication may be reproduced in any form by photocopy microfilm retrieval system or by any other means now known or hereafter invented without the prior written permission of Themis Computer The information in this publication has been carefully checked and is believed to be accurate However Themis Computer ass umes no resp onsibility for inaccuracies Themis Computer retains the right to make changes to this publication at any time without prior notice Themis Computer does not assume any liability arising from the application or use of this publication or the product s described herein RESTRICTED RIGHTS LEGEND Use duplication or disclosure by the United States Government is subject to the restrictions set forth in DFARS 252 227 7013 c 1 ii and FAR 52 227 19 TRADEMARKS and SERVICEMARKS Themis is a registered trademark of Themis Computer Inc Intel and Xeon are registered trademarks of Intel Corporation Red Hat is a registered trademark of Red Hat Inc Linux is a registered trademark of Linus Torvalds All other trademarks service marks or registered trademarks used in this publication are the property of their respective owners CE Marking CE This product complies with the European EMC Directive 2004 108 EC and the European Low Voltage Safety Directive 2006 95 EC Safety Precaution
36. B Serial Port Custom Module the Custom Module must be spec ified on the purchase order for your RES system E 7 Themis Computer RES 32XR3 Installation Manual Configuration 1 Version 1 3 E 8 Themis Computer Appendix Re Packing Instructions F 1 Re Packaging for Shipment If it becomes necessary to return equipmen t to Themis Computer it is very impor tant that the equipment be shipped in packaging that provides adequate protection against crushing and moisture invasion The or iginal packaging is best for this pur pose provided the packaging is retained in serviceable condition If the original packaging is no longer serviceable or no longer available care should be taken in repackaging for shipment so that the equipment is protected from damage in transit Equipment should be wrapped in a moisture resistant covering and placed either in double boxes or in boxes with crush resistant insulation between the equipment and the outer walls of the contai ner If using the original packaging the clear plastic membrane should be placed next to the equipment i e up against the bottom or down against the top The following instructions assume the original packing components are still avail able and in serviceable condition F 2 Packing Components The original packing components are shown in Figure F 1 page E 2 They com prise a packing box bottom crush resistant la yer and top crush resist
37. D 6 storage drive installation 2 71 Storage drives 2 1 Storage Drives Front Doors Removed 2 0 storage drive adapter functions super I O 1 13 Super I O 1 13 Super IO Device Configuration Serial Port 2 Attribute 3 19 Serial Port Address 3 8 Super VGA pinouts A 3 SVGA connector 2 17 system LEDs 1 6 NIC Gb Ethernet 1 7 Overheat 1 7 Power 1 7 Power Fail LED 1 8 Power Fail LED Left 8 Power Fail LED Off 8 Power Fail LED Right 8 SAS SATA II storage drives HDD 1 7 System Power 5 T TCG TPM Execute TPM Command 3 25 TPM Enable Disable Status 3 25 TPM Owner Status 3 25 Indicate Physical 3 25 TPM Deactivated 3 25 TPM Owner 3 25 Technical Support 8 Temperature Threshold 3 22 Temperature Tolerance 3 22 TOE components 3 2 Trusted Computing TCG TPM 3 24 TTYA COM1 A 2 Turning the System Off 2 17 Turning the System On 2 16 U UARTs 7 13 Ultra320 SAS SATA storage drives 4 USB Ports D 4 USB ports A 2 D 4 USB Serial Ports 7 9 USB Signal Descriptions A 2 User Access Level Full Access 3 30 Limited 3 30 No Access 3 30 View Only 3 30 Vv Version Revision History iii Version 1 0 iii Version 1 1 iii Version 1 2 iii Index 7 Themis Computer RES 32XR3 Installation Manual Configuration 1 Version 1 3 Version 1 3 iii View BMC System Event Log Clear BMC System Event Log 3 26 Virtualization Technology 3 8 W Windows Hardware Error Architecture 3 24 X Xeon processors 1 2 XMod
38. Drive alanen ineeie a a E E 2 9 2 1 5 1 Opening the RES 32XR3 Front Doors sssessessesessessesesesesesesse 2 10 2 1 5 2 Storage Drive Removal ksiccuaesscistasvcaasaciiaesicaecasiar dachoaeestasians 2 10 2 1 5 3 Storage Drive Installation scccsclentiuinticnanstiyededeinay 2 11 2 1 6 Removable 120 mm Fan ss ssessssssessessesseesseesssresseesresresseeseesresseesseseesressee 2 12 2 1 6 1 Removing and Installing a 120 mm Fan eee eee eeteees 2 12 DOVE POETS UD LY ad ceetacesteaue te cues a a neat A a 2 13 2 1 7 1 Removing a Power Supply cccecccceeseeeeeceteceseeneeeenseeesaeens 2 13 2 1 7 2 Installing a Power Supply scrviessiccs sess ns aes eavsedentasercdenstatasenciaes 2 14 22a Rack MOUNIS soncu eet eset teat hic are techn E coset cdl atuaee tie cuca acca tate tas 2 15 2 2 1 Mounting Brackets ous dcsdiameee diane Geen tassse Aelia Aaa Nites Rew edes 2 15 2 2 2 Rack Mount Slides Optional ccccecccceccessceeseecseceeeeeeeeeeseecseeeneeeeees 2 15 De Se Operaio lap seek otek Ma tasia ys le maine dele ad cy gtinesess naa E E E a E A shee Aste 2 16 2 3 1 Plugging in the AC Power Cords 0 cceccceeccessceeseeeseceeeceeeeenseeesseeneensaes 2 16 2 3 2 Turning the Syston On uragon n a atietenwueina nus e etd 2 16 2 3 3 Getting Started aeneae n a e e a E E 2 17 ZS Sl o Conhg ratio m inean a a i a r 2 17 23 3 2 Levi TS ta be OI jrscctsetes yaecy enema dun beaaaveaevecet vane eatentad seu saveaass 2 17 2 3 4 T
39. E 1 2 1 USB Ports A and B The RES Audio USB Serial Port Cust om Module supports two USB Universal Serial Bus port connectors see Figure E 4 for pinouts USB A and USB B on the front I O panel USB pinout descriptions are listedin Figure E 4 pinout signal descriptions are described in Table E 1 USB A USB B Header J11 USB2 5V To J10 Pin 2 At Bt USB1 5V To J10 Pin 1 USB2 DM To J10 Pin 4 A2 B2 USB1 DM To J10 Pin 3 USB2 DP To J10 Pin 6 A3 B3 USB1 DP To J10 Pin 5 USB2 GND To J10 Pin 8 A4 B4 USB1 GND To J10 Pin 7 Figure E 4 Dual USB Connector Pinouts Table E 1 Dual USB Connector Pinout Signal Descriptions J10 Pin Signal Name Pin Signal Name 1 5V 2 5V 3 DM Data Minus 4 DM Data Minus 5 DP Data Plus 6 DP Data Plus 7 Ground 8 Ground 9 Cut Off for Keying 10 No Connection E 4 Themis Computer E Optional RES Audio USB Serial Port Module RES Audio USB Serial Port Custom Module E 1 2 2 Serial Port COM1 The RES Custom Module supports one male DB9 serial port connector J9 on the front I O panel see Figure E 5 COM1 The COM1 pinout is listed in Figure E 5 pinout signal descriptions are described in Table E 2 which also shows the serial header J8 connections to serial port J9 Serial Port COM1 1 5 may 6 9 J8 Header Figure E 5 COM1 Serial Connector Pinout Table E 2 COM1 Serial Connector P
40. IMM 2A a Mi P1 DIMM 3B Branch 2 TU P1 DIMM 3A Bi hens TITT Figure 2 3 Memory Module Slot Locations 2 If a module is already seated in the slot you have selected for installation remove it by gently pressing down and outward on the latches at both ends of the slot see Figure 2 4 on page 2 6 then pulling the old module directly up from the slot until it is free of the connector see Figure 2 4 on page 2 6 2 5 Themis Computer RES 32XR3 Installation Manual Configuration 1 Version 1 3 Press latch downward amp outward at each end Figure 2 4 Memory Module Removal 3 Before inserting a new memory module in to the vacant slot make sure that the two latches are pulled outward away from the center of the slot With the latches in the outward position gently insert the new module verti cally into its slot and press firmly downward until it snaps into place ing the alignment notch at the bottom edge with its counterpart ridge at f Note Make sure the memorymodule has the proper orientation by align the bottom of the slot 4 If all the memory modules have been re placed in the system replace the air flow diverter and secure it with the eight screws previously removed 5 Replace the PCI card retainer bracket and secure it with the single screw removed in Step 1 on page 2 4 2 6 Themis Computer 2 Installation and Operation Installation Procedures 2 1 3 PCI Cards RES 32XR3 Configura
41. Mount Slide Installation Caution Any screws used to mount a slide to a RES 32XR3 chassis must not ex ceed a length of 3 8 to prevent excessive penetration of the chassis Themis Computer RES 32XR3 Installation Manual Configuration 1 Version 1 3 2 3 Operation 2 3 1 Plugging in the AC Power Cords Before powering on the RES 32XR3 plug in the AC power cords as follows 1 On the rear of the RES 32XR3 plug an AC power cord shipped with unit into the AC power socket on each power supply see Figure 2 14 Figure 2 14 AC Power Socket and LED on the RES 32XR3 Rear 2 3 2 Turning the System On 1 Plug the AC power cord from each of the RES 32XR3 power supplies into a live AC outlet 2 On the front of the RES 32XR3 pushthe system power on off button see Fig ure 2 15 This will cause the system POWER LED to light green as well as the rear power supply module LED to light green Power LED System Power On Off Button I nnaapannsnanann gt TTT i DARAAARARAANOT i LLN a Figure 2 15 System Power Button and LED on the RES 32XR3 Front 2 16 Themis Computer 2 Installation and Operation Operation 2 3 3 Getting Started 2 3 3 1 Configuration 1 Make sure all storage drives are installed see SAS SATA II Storage Drive page 2 9 Drive ID numbers are shown in Chapter 1 Changes may be made through the BIOS 2 Make sure that a graphics card is installed in
42. R3 12 1 Right rack mount bracket 2 15 ROM File extraction 3 38 Index 6 ROM File Extraction Screen 3 38 RSDT 3 23 RTC 3 24 S S M A R T 3 16 S3 Sleep 3 23 S4 Hibernate 3 23 Safety Instructions iv Electrostatic Discharge ESD v Instructions for the Lithtum Battery vi Operation of Laser Source Devices v SAS 3 18 SATA 3 13 screw locations for rack mount slides B SEL 3 26 Serial Flash 3 36 Serial Over LAN 3 19 Serial Port D 3 Serial Port COM1 D 5 Serial Port Number Base Address IRQ 3 19 serial ports A 2 D 5 Set LAN Configuration BMC Watch Dog Timer Action 3 27 BMC Watch Dog TimeOut 3 28 Channel Number 3 27 Channel Number Status 3 27 IP Address Source 3 27 Gateway Address 3 27 IP Address 3 27 Mac Address 3 27 Subnet Mask 3 27 Shock 7 16 Shock endurance 2 slimline drive 2 Sound Baffle Installed front 1 16 rear 1 17 South Bridge Configuration Legacy USB Support 3 13 Port 64 60 Emulation 3 13 Themis Computer Index USB 2 0 Controller 3 13 USB Functions 3 3 Southbridge 2 Specifications Altitude 7 14 BTU Rating 1 15 Dimensions 7 14 Electrostatic Discharge 1 16 Input Current 1 15 Input Frequency 1 15 Input Leakage 1 15 Input Power 5 Input VA Rating 1 15 Input Voltage 1 15 Maximum Wet Bulb 17 14 Noise 7 16 Packaging and Shipping 1 18 Plug Type 5 Power Factor 1 15 Relative Humidity 4 Shock 1 16 Temperature 1 14 Weight 14 SR IOV 3 17 Stereo Audio Jack D 3 Stereo Audio Ports
43. T OAS assert ater elas Anetra Ae Gs ed tah lace ha 33 3 12 DCA Technology sive cske reich a r ees 3 3 5 03 DCA Prefetch Delay ican niece Geedaaaewas Bd SoA ntel V Td kn five es taht scree a Aap areata signees 3 3 3 15 Active State Power Management 0 0 00 ccecceeseeeseeeteeeeeeteees 3 3 3 16 IOH PCI E Max Payload Size cccccssccsetscseccsscesncesensenees 3 3 3 L7 USB FUnci Ons lt j 2 accssasdnoantaensstucghatelcatayatiaatsndexxesaretaasiatontial 3 3 3 18 USB 2 0 Controller Available when the item USB Functions is disabled 33 3 19 Legacy USB Support medicinerna ir baci i 3 3 3 20 Port 64 60 Emulation sssssseesessesessssseseesseseesesseseesessessesseseesesse IDE SATA Configuration s ssessssseessessesseossesseesresseestssresseeseesressressesese 3 3 4 1 SATA 1 Configuration 0 c ccc ccccccesceesceceeeeeceeeecsseeeseeeeees S342 Configure SATAH LN AS sertes ea iassa ea Ssa Aa EALER Eain 3 3 4 3 ICH RAID Code Base This feature is available when the option RAID is selected 5 ccisedbesasdederansyseaucasecsestaventusersess 3 3 4 4 ICH AHCI Code Base Available when AHCI is selected for Configure SATA 1 as c ccccescssscsosccesscsentesesccesessecsens 3 3 4 5 SATA 2 Configuration This feature is available when the option IDE is selected for SATA 1 oo ceeeeeeteeeteees 3 3 4 6 IDE Detect Timeout sec 2 3 ooaita iiss hn ASS 3 3 4 7 Primary IDE Master Slave Secondary IDE Master Slave
44. The color of the left LED when facing the port indicates the LAN connection speed Off 10 MHz Green 100 MHz Amber 1 GHz The right LED when lit indicates LAN activity a NIC Network Interface Controller Themis Computer RES 32XR3 Installation Manual Configuration 1 Version 1 3 1 8 Table 1 4 Power Supply LED Behavior Symbol LED Power System LED Description On Power Fail LED e If system is powered on e red LED Left Power Supply warns that the upper power 679 supply has failed or has lost Note system is powered on AC input On Power Fail LED e If system is powered on s red LED Right Power Supply warns that the lower power A supply has failed or has lost Note system is powered on i 5y P AC input Off Power Fail LED e System is powered on e Left amp Right Power supply and power supply modules Z are functioning normally or Note system is powered on system has been shut down And and there has been no inter z ruption to the AC power W On Power Fail LED e AC power has been e red LED Left or Right Power Supply interrupted to both power SF supply modules When Note system is powered off power is restored but sys Or tem is still of f one of the two indicator lights will be lit W Rear On Green LED e System is receiving DC Power Supply green adj
45. The device must be used in accordance with the instructions for use e Electrical installations in the room must correspond to the requirements of respective regulations e Take care that there are no cables part icularly mains cables in areas where persons can trip over them e Do not use a mains connection in sock ets shared by a number of other power consumers Do not use an extension cable e Only use the mains cable supplied e The unit is completely disconnected from the power source only when the power cord is disconnected from the power source Therefore the power cord and its connectors must always remain easily accessible e Do not set up the device in the proximity of heat sources or in a damp location Make sure the device has adequate ventilation e All connection cables must be screwed or locked to the chassis housing e The device is designed to be used in horizontal position only e The device is no longer safe to operate when the device has visible damage or the device no longer functions e In these cases the device must be shut down and secured against unintentional operation e Repairs may only be carried out by a person authorized by Themis Computer e The device may only be opened for the installation and removal of extension PCI cards memory modules storag e drives fan housi ngs power supplies Themis Computer RES 32XR3 Installation Manual Configuration 1 and the lithium bat
46. a tacit oe C 1 C22 installation cag ccgstecs ecto deco ected E a O E E E eed ine desea ee eas C 1 Appendix D Optional Remote On Off Switch 0 00 c cece ececeteceteeeeeeeeeeeeneees D 1 Dil Remote On Off Configuration sssssessssseesseesrsseesseesresresseesresressesseeseesresseesesressre D 1 D 2 Remote On Only Configuration esessssseesseeseeseesseesrssresseesresresseeseeseesresseesesressee D 2 D 3 Ordering the Remote On Off Switch sessoesnessessseesesseesseeseseessesseeseesresseeseeseessee D 2 Appendix E Optional RES Audio USB Serial Port Module 0 cc eee D 1 E 1 RES Audio USB Serial Port Custom Module ccccceececceeeseeeteceeeeeeeeeeeeenaeees D 1 E1 Attach VO Caples seinusiousieniernen srra e E EE D 3 Beal 2 Connector PIM OUTS oiha nnn e e arnie eana e OE ai D 4 Bac2 Ai USB Ports Aand vacate cians ar e EK ets D 4 xiii Themis Computer RES 32XR3 Installation Manual Configuration 1 Version 1 3 E22 S ttal Port COMI Josssie duster it ai a E A EER Na D 5 E 1 2 3 Stereo Audio Ports Optional ssssesessseessessssseosseessesrssseessesess D 6 E 2 Ordering the RES Audio USB Serial Port Custom Module eee ceceeeeeeeeeeeeees D 7 Appendix F Re Packing Instructions 0 0 0 0cccccccccccesscecesscecesececssececsseeeesseeeesseeeeaees E 1 F 1 Rez Packaging for Shipment wip ursesewadelti da enicncopektuvrancrvndsetesuacdiechbedaesarenadas E 1 E2 Packing Components ois sede se ia
47. acent to AC input power 3 3V 5V 12V Modules LED from the power supply Note system is powered on module Off Green LED e System is off and not adjacent to AC input Note system is powered off receiving DC power from the Power Supply module a This LED behavior indicates only that AC power has interrupted to both power supplies and does not indicate which power supply module lost power first or regained power first b This LED behavior indicates that DC power is not being used and the system is off It does not indicate a loss of AC power to the power supply module Themis Computer 1 Overview and Specifications System LEDs and I O Connectors Table 1 5 O Connectors Connector Description PS 2 Mouse e 6 pin mini DIN female connector to attach a PS 2 mouse device PS 2 Keyboard e 6 pin mini DIN female connector to attach a PS 2 keyboard device USB 0 and USB 1 Hi Speed USB 2 0 Serial Ports e Two 4 pin USB connectors to attach serial devices to USB Port 0 and USB Port 1 Note Five additional USB ports can be accessed directly from the motherboard COM 1 Serial Port e One DB9 male connector on rear panel to attach a serial device to the COM 1 port Super VGA Port e 15 pin VGA connector to attach a monitor device Ethernet LAN Ports e Standard RJ45 connectors to attach one or two gigabit Ethernet LAN line s LAN 1 and
48. ant layer The bottom and top crush resistant layers are id entical components placed so that the F 1 Themis Computer RES 32XR3 for X8DTH iF 6F Installation Manual Version 1 3 side with the plastic membrane is against the equipment Top Layer Membrane pas Pay _ Figure F 1 Packaging Components F 3 Instructions for Re Packing Re assemble the packing material about the equipment in accordance with the fol lowing instructions See Figure F 2 page E 3 e Inspect the original packing materials for serviceability e Place one crush resistant layer open side down membrane side up in the bot tom of the box e Place the equipment on top of the bottom layer right side up Themis Computer F Re Packing Instructions Instructions for Re Packing e Place the other crush resi stant layer membrane side down open side up on top of the equipment e Press down on the top laye r to firmly compress th e layers around the equip ment and allow for the box flaps to be closed e Seal the top of the box with strong packing tape wrapping the tape completely around the box both lengthwise and crosswise e Prepare for shipment in accordance with the instructions received from Themis Computer Ra s Figure F 2 Order of Assembly F 3 Themis Computer RES 32XR3 for X8DTH iF 6F Installation Manual Version 1 3 F 4 Themis Computer Numerics 1 44 MB 3 5 floppy
49. cate the drive to be removed 3 Insert the barrel lock key into the hard drive you want to remove and turn it 45 degrees clockwise presuming the storage drive is locked see A in Figure 2 10 on page 2 11 4 Firmly push in the latch lock until the latch handle releas es away from the drive see B in Figure 2 10 5 Grab the latch handle and pull the drive completely away from its slot see C in Figure 2 10 2 10 Themis Computer 2 Installation and Operation Installation Procedures Caution When pulling the Storage Drive from the chassis hold it at the bot tom to prevent it from falling and damaging the drive A Insert key into barrel lock and turn 45 degrees clockwise Latch Handle Figure 2 10 RES 32XR3 Storage Drive Removal 2 1 5 3 Storage Drive Installation To install a storage drive 1 Make sure the latch handle of the drive to be installed is in the open position 2 Properly orient the new driv e and insert it into the vacant drive slot If the drive cannot be inserted into the slot rotate it 180 degrees 3 Push the drive toward the rear DO NOT CLOSE the latch handle while push ing until the drive is flush with the front of thechassis The handle will swing closed when it comes into contact with the RES 32XR3 chassis 4 When the drive is fully inserted in its slot insert the key into the barrel lock and turn it 45 degrees counter clockwise The drive is now locked chassi
50. d 3 28 Memory ECC Error Log 3 28 PCI Error Log 3 28 View Event Log 3 28 Exit Options Screen 3 33 Expansion slots 2 F flanges 2 15 Flash Recovery Screen 3 39 Flash ROM 3 17 floppy disk drive 1 4 form factor 3RU 1 2 front bezel 2 9 front panel 1 4 FSB Frequency 3 7 fused AC 1 15 G General Specifications 4 Gigabit Ethernet A 4 graphics card 2 17 graphics controller 3 8 Grounding Methods v H Hardware Health Monitor CPU 1 Temperature 3 21 CPU 2 Temperature 3 21 CPU Overheat Alarm 3 20 System Temperature 3 21 hot keys 3 2 HPET 3 24 Hyper Terminal 3 36 I I O Acceleration Technology 3 12 T O Cables attaching D 3 T O Connectors Ethernet LAN Port 1 9 PS 2 keyboard 1 9 PS 2 mouse 1 9 Serial Port 1 9 USB Serial Ports 1 9 T O connectors 1 6 I O faceplates 1 4 ICH10R Southbridge 7 2 IDE Master Slave 3 14 32 Bit Data Transfer 3 17 Block 3 15 DMA Mode 3 16 LBA Large Mod 3 15 PIO Mode 3 15 S M A R T For Storage Drives 3 16 Type 3 14 Index 3 Themis Computer RES 32XR3 Installation Manual Configuration 1 Version 1 3 IDE SATA Configuration Configure SATA 1 as 3 13 Fourth IDE Master 3 4 ICH AHCI Code Base 3 4 ICH RAID Code Base 3 4 IDE Detect Timeout 3 14 Primary IDE Master Slave 3 14 SATA 1 Configuration 3 3 SATA 2 Configuration 3 14 Secondary IDE Master Slave 3 14 Third IDE Master 3 14 Installation procedures 2 installing rack mount slides B memory modules 2 4 PCI ca
51. d Core 5500 Series or Quad Six core 5600 Series Xeon CPUs up to 6 4 GT s each tered ECC DDR3 1333 1066 800 MHz 72 bit SDRAM Chipset e Intel 5520 Tylersburg chipset e ICH10R and IOH 36D Memory e Twelve 12 240 pin DIMMs supporting up to 192GB 16GB DIMMs of Regis Expansion slots e See Table 1 1 for details Rear Panel I O See Table 1 5 on page 1 9 for details Peripheral Support Five SATA storage drives directly from motherboard with one SATA CD RW DVD ROM slimline drive additional SATA support is provided by an op tional PCl card installation which can also be used to provide SAS support Eight SAS 2 0 storage drives directly from motherboard 1 combination CD RW DVD ROM slimline IDE drive Operating temperature e 0 up to 65 C 32 up to 149 F Shock endurance e 35G 25 msec duration 3 axis Dimensions 20 43 2 cm deep 5 25 8RU high 17 43 4 cm wide 19 48 3 cm with mounting brackets slides Rack mount brackets and e Left and right rack mount tabs are attached to the chassis Left and right rack mount slides are optional Dual power supplies 750 watts each auto ranging 100 265 VAC Load sharing N 1 redundant hot pluggable Optional Choice of 750 watt 48V or 500 watt 28V DC Power supply a System has a maximum of eight drive bays b SAS 2 0 is only supported directly from the motherboard on the X8DTH 6F configu
52. d at the time of purchase The RES 32XR3 chassis contains six threaded screw holes on each side to accommodate 8 32 size screws included with the r ack mount slide kit steel sl ides require four mounting holes and aluminum slides require three mounting holes see Figure B 1 202 4 424 9 24 9 Legend Screw Hole Size 8 32 Figure B 1 Screw Locations for Rack Mount Slides B 1 Themis Computer RES 32XR3 Installation Manual Configuration 1 Version 1 3 Dimensions of the screw hole patterns on the sides of the RES 32XR3 chassis for installing rack mount slides are shown in Figure B 1 Holes for steel slides are marked A and holes for aluminum Jonathan slides are marked B Caution Any screws used to mounta slide to a RES 32 chassis must not exceed a length of 3 8 to prevent excessive penetration of the chassis The rack mount slide installation kit includes the following items a Two inside slide sections b Two outside slide sections c Two front short slide brackets d Two rear long slide brackets e Assorted screws washers and nuts Follow these steps to install a steel rack mount slide to the RES 32XR3 chassis 1 Attach the inside slide section see Figure B 2 on page B 3 to both sides of the RES 32XR3 chassis using four 8 32 screws per side 2 Measure the depth of the 19 equipment rack into which the RES 32XR3 sys tem will be installed this can vary from 24 to 3
53. d to th e system You can choose for the system to remain powered off in which case you must press the power switch to turn it back on or for it to automatica lly return to a power on state See the Advance ed BIOS Setup section to change this setting The default setting is Last State 1 5 1 5 1 1 5 2 PC Health Monitoring This section describes the PC health monitoring features of the RES 32XR3 mother boards All have an on board System Hardware Monitor chip that supports PC health monitoring An on board voltage monitor will scan these on board voltages continu ously CPU Cores 1 8V 3 3V 5V 12V 3 3V Standby 5V Standby VBAT Mem ory and Chipset Voltages Once a voltage becomes unstable a warning is given or an error message is sent to the screen Users can adjust the voltage thresholds to define the sensitivity of the voltage monitor Fan Status Monitor with Firmware Control The PC health monitor can check the RPM status of the cooling fans The on board chassis fans are controlled by Thermal Management in the BIOS under Hardware Monitoring in the Advanced section Environmental Temperature Control The thermal control sensor monitors the CPU temperature in real time and will turn on the thermal control fan whenever the CPU temperature exceeds a user defined threshold The overheat circuitry runs independently from the CPU Once it detects that the CPU temperature is too high it will automatically t
54. dapter Priority This feature allows the user to specify which graphics controller is to be used as the primary boot graphics controller The options are Onboard VGA default Off board VGA and PCI E Slot 7 Super IO Device Configuration Serial Porti Address This option specifies the base I O port address and the Interrupt Request address of Serial Port 1 and Serial Port 2 Select Disabled to prevent the serial port from access ing any system resources When this option is set to Disabled the serial port physi cally becomes unavailable Select 3F8 IRQ4 to allow the serial port to use 3F8 as its T O port address and IRQ 4 for the interrupt address The options for Serial Port are Disabled 3F8 IRQ4 default 3E8 IRQ4 2F8 IR Q3 and 2E8 IRQ3 The options for Serial Port2 are Disabled 2F8 IRQ3 default 3E8 IRQ4 2E8 IRQ3 and 3F8 IRQ4 Themis Computer 3 BIOS Setup Utility 3 3 6 2 3 3 7 3 3 7 1 3 3 7 2 3 3 7 3 3 3 7 4 3 3 7 5 Advanced Setup Configurations Serial Port 2 Attribute This feature allows the user to set COM 2 as a normal serial port or a virtual COM port used for SOL Serial Over LAN The options are SOL default and COM Remote Access Configuration Remote Access This allows the user to enable the Remote Access feature The options are Disabled and Enabled default If Remote Access is set to Enabled the following items will display Serial Port Number This feature allow
55. default 3 3 2 15 C State package limit setting Available when Intel C State Tech is enabled If set to Auto the AMI BIOS will automatically set the limit on the C State package register The options are Auto default C1 C3 C6 and C7 3 3 2 16 C1 Auto Demotion When enabled the CPU will conditionally demote C3 C6 or C7 requests to C1 based on un core auto demote informat ion The options are Disabled and Enabled default 3 9 Themis Computer RES 32XR3 Installation Manual Configuration 1 Version 1 3 3 3 2 17 C3 Auto Demotion When enabled the CPU will conditionally demote C6 or C7 requests to C3 based on un core auto demote information The options are Disabled and Enabled default 3 3 2 18 ACPI T State 3 3 3 3 3 3 1 3 3 3 2 3 3 3 3 3 3 3 4 Select Enabled to report Processor throttling in the ACPI The options are Disabled default and Enabled Advanced Chipset Control The items included in the Advanced Settings submenu are listed below CPU Bridge Configuration QPI Links Speed This feature selects the QPI data transfer speeds and enables disables QPI Frequency selection If Slow mode is selected QPI Frequency will remain slow safe mode and cannot be selected by the user If Full speed is selected the following item will be available for the user to select the QPI frequency The options are Slow Mode and Full Speed default QPI Frequency Available when QPI Links Speed is set
56. des can be mounted on each side of the RES 32XR3 for the purpose of sliding the unit in and out of a rack Mounting slid es are optional and can be ordered at the time of purchase To learn how to install rack mount slides refer to A ppendix B Rack Mount Slide Installation Table 1 8 Approximate Weights of the RES Series Weight CPU ae Model Approximate Sockets Depth Description RES 12XR3 19 5 Ibs 8 9 kg 2 20 Includes e All CPU sockets filled e 6 DIMMs RES 12XR3 S 17 lbs 7 7 kg 2 17 e 2 storage drives e 2 PCI cards e 1 CD RW DVD ROM drive RES 11XR3 16 5 Ibs 7 5 kg 1 17 e 2 power supplies RES 22XR3 25 Ibs 11 4 kg 2 20 Includes 7 e All CPU sockets filled RES 22XR3 S 23 Ibs 10 4kg 2 17 e 6 DIMMs e 2 storage drives e 2 PCI cards RES 22XR3 FIO 25 3 lbs 11 5kg 2 16 e 1 CD RW DVD ROM drive e 2 power supplies RES 21XR3 22 5 lbs 10 2 kg 1 17 RES 32XR3 28 5 Ibs 12 9 kg 2 20 Includes z e All CPU sockets filled RES 32XR3 S 26 5 Ibs 12 kg 2 17 e 6 DIMMs e 2 storage drives e 2 PCI cards RES 32XR3 FIO 29 Ibs 13 2 kg 2 16 e 1 CD RW DVD ROM drive e 2 power supplies RES 31XR3 26 Ibs 11 8 kg 1 17 1 19 Themis Computer RES 32XR3 Installation Manual Configuration 1 Version 1 3 1 20 Themis Computer Installation Section Chapter Installation and Operation This chapter describes e How
57. e Once you have made your selection click Next to continue Step 6 Enter the installation nu mber if you don t have an installation number select the Skip Entering Installation Number Radio Button Click OK and if you did not enter an installation number you ll be given a warning Click Skip to continue see Figure C 6 on page C 6 Themis Computer RES 12XR3 Installation Manual Configuration 7 Version 1 3 C 6 RED HAT ENTERPRISE LINUX 5 Sesect the appropriate keyboard for the system a Sovenan Spanish Sreown Swiss French Th instat tre ful set of supported packaipes jncilased ii Our Subscription please enter your instatiation Number Seles Freonen aun yuan pi ve Swiss German lostatiabon Murriteet Swiss Geran NARLI Sap entering instaitatvon Nurntver Tmi ieacripey Tamus Typewriter x Cone Por Turkish cate 7 m 2 Zi US intematronal Ubracian Unvted tingdom Berne Notar S beck gt Next Figure C 6 Enter Installation Number Click Next to continue Step 7 Partitioning allows you to divide your st orage drive into isolated sections where each section behaves as its own storage drive Partitioning is particularly use ful if you run multiple operating systems On this screen you can choose to create the default layout or choose to manual parti tion using the Create custom layout option of Disk Druid The first three options allow you to perform an a
58. e 19 rack mountable e 20 50 8 cm deep Weight e Under 42 pounds 19 kg includes 6 full length up to 12 25 PCI cards 1 CD RW DVD ROM drive 8 SAS SATA II Storage drives and 2 power supplies e Add 8 8 pounds 4 kg for the shipping container and two AC power cords e The manual and associated shipping paperwork weighs ap proximately 1 Ib 0 5 kg 19 Rack Mountable with Slide capability e Left and right rack mount tabs attached to chassis e Left and right rack mount slides are optional Temperature Operating Non Operating e 0 up to 65 C 32 up to 149 F e 40 to 70 C 40 to 158 F Relative Humidity Operating Non Operating e 8 to 95 non condensing e 5 to 95 non condensing Maximum Wet Bulb Operating Non Operating e 55 C non condensing e 70 C non condensing Altitude Operating Non Operating e 0 to 10 000 feet above sea level e 0 to 40 000 feet above sea level a Specifications are dependent on the configuration in this manual Themis Computer 1 Overview and Specifications Specifications 1 8 2 Electrical Table 1 7 lists the electrical specifications for the RES 32XR3 Table 1 7 RES 32XR3 Electrical Specifications Description Parameter AC 120 volts 750W DC 48 volts 750W DC 28 volts 500W Input Power typical e 420 watts typical e 420 watts typical e 450 watts typica
59. ed aa suse ceed a A E Sohn dace a ae eee awed ea aes 1 1 1 2 System LEDs and I O Connectors is steivalatintientitsantaseedsie a by aR aunties 1 6 1S CHIPSEE OVERVIEW enaere nies a Renton ecu teal E ah tue teen 1 10 1 3 1 The 5500 5600 Series Processor and 5520 Chipset ccceceeeseeseeteees 1 10 1 4 Special Features cn earnan ae iden RE RER ATAS 1 11 1 4 1 Recovery from AC Power Loss o5iosisctassh acca uctiaiees eecaa bes aoatseeteaah eas 1 11 1 5 PC Health Monitoring xi accede vis sacs eetan iie o e Ea A E R E cipodudone 1 11 1 5 1 Fan Status Monitor with Firmware Control ccccceceesseeeteceeeeeeeeeeeees 1 11 1 5 2 Environmental Temperature Control cecccesceeecceeeeeneeceteceeeeeeeeenseees 1 11 15 3 System RESOULCE Alert usich secede mednaiaa aattinisoisnwpaaliavtaas naan 1 12 EO ZAR PIC AUCs Sac cascesaces ceugetaateacechem aut tecabaancs ae E a O e Scene 1 12 1 6 1 Slow Blinking LED for Suspend State Indicator 0 0 0 eee eeeeeeeeteees 1 12 1 6 2 Main Switch Override Mechanism ccccccecsseceteceeeeeeeeeeeeeeeeeeeeenseees 1 13 it S per lO Controller sirenaren uretran a ERT TaN AT eaters 1 13 158 Specifications zene a a a a n a a a aa 1 14 18 1 General cieni aa E RE Gentle ER RTE 1 14 TZ Electricals dents eann t ae E a O E A EES 1 15 18 2040 System POWE arina so ionic E E E cage a 1 15 1 8 2 2 Output Voltage renon inion E Seiten bees aaa ts 1 15 1 8 3 Environmental ccszsiccssatou
60. elcome Sereen sesas22ssacsducstarguzesdavieistansselalneshwa dates E aah wadegiuineedacstatousesdaniea C 3 Figure C 4 Language Selecting 3siehe Jains ond io ces enesteeedaesseaagd eesasts Ahead C 4 Figure C 5 Selecting Layout Py pei aici acacedoaccelst acs vaecesant a bedea a oaedtesniel aoauerncesecamncas C 5 Figure C 6 Enter Installation Number i ss5 2ssaccasvcaceus etadasec ashe a Saaees seaseceahedestes heal dae C 6 Figure C 7 Parton eso ccasesee i dtc htdcces fs Scenes Bon austere teste i sane aa neste Rae C 7 Figure C 8 Reviewing Options icc stasis assdaes dasaa ins cts veav eda nces aad cas ateand Gude dessin eae C 8 Figure C 9 Creating a Custom Layout iat asut aecictavestd genset ean uautntndearciesl asta mesa C 9 Figure C 10 Setting Up Boot boaderwcaowsne Anadis Senne ea C 10 Figure C 11 Master Boot Record VIB Visas iescche ners caecieomatd oaahacsgstdeed A eediewersaedeceivoned one C 11 Figure C 12 Network Devices List cea titesetasenscedd nteiasiniad dds a eteudd k Ratan eda ease C 12 Figure C 13 Edit Interface Pop Up Screen sca bencsudcanesicresdcadutighavsachiaeleahamiediadehdicisataeie C 13 Themis Computer Version 1 3 Table of Contents Figure C 14 Selecting Time 7 0ne ci061 c3s cat vel ates tied asta ive eee Rees C 14 Figure C 15 Setting Up Root Account and Password eccessseeseeseeeeecesecneeeseeeneeeeeenees C 15 Figure C 16 Package Installation Default Screen ee ecceseeneeeeeeeceteceseceeeaeeeneeereeae
61. em protocol 3 37 Index 8 Themis Computer Place Stamp Here Themis Computer 47200 Bayside Parkway Fremont CA 94538 Attn Publications Department _ lt e SINSHL Reader Comment Card We welcome your comments and suggestions to help improve the RES 32XR3 Installation Manual Configuration 1 Please take time to let us know what yo u think about this manual Information provided in the manual wascomplete Agree Disagree __ Not Applicable Information was well documented and easy to follow Agree Disagree __ Not Applicable _ e Information was easily accessible Agree Disagree __ Not Applicable _ e The manual was useful Agree Disagree __ Not Applicable _ e Please write down any comments you may have about this manual including how it can be improved Name Title Company Address
62. ent Log Configuration 3 28 Hardware Health Monitor 3 20 IDE SATA Configuration 3 3 IPMI Configuration 3 25 PCI PnP Configuration 3 17 Processor and Clock Options 3 7 Remote Access Configuration 3 19 Set LAN Configuration 3 26 Super IO Device Configuration 3 18 Trusted Computing 3 24 Index 1 Themis Computer RES 32XR3 Installation Manual Configuration 1 Version 1 3 View BMC System Event Log 3 26 BIOS Recovery 3 35 Boot Sector Recove ry froma Serial Port 3 36 Boot Sector Recovery from a USB Device 3 35 Boot Sector Recovery from an IDE CD ROM 3 36 How to Recover the AMIBIOS Image 3 35 Boot Configuration 3 3 Boot Device Priority 3 31 CD DVD Drives 3 32 Removable Drives 3 32 Storage Drives 3 3 Exit Options 3 33 Discard Changes 3 34 Discard Changes and Exit 3 33 Load Fail Safe Defaults 3 34 Load Optimal Defaults 3 34 Save Changes and Exit 3 33 Main Setup 3 3 Processor 3 4 Supermicro X8DTH 3 4 System Memory 3 4 System Time System Date 3 3 Security Settings 3 29 Boot Sector Virus Protection 3 30 Change Supervisor Password 3 29 Change User Password 3 30 Clear User Password 3 30 Password Check 3 30 Supervisor Password 3 29 User Access Level 3 30 User Password 3 29 Boot Configuration CD DVD Drives Retry Boot Devices 3 32 Boot Features AddIOn ROM Display Mode 3 6 Bootup Num Lock 3 6 Hit Del Message Display 3 6 Index 2 Interrupt 19 Capture 3 6 Power Button Function 3 6 PS 2 Mouse Support 3 6 Quick Boot
63. erconnect link pair provides 84 signals Each processor supports two QuickPath links one going to the other processor and the other to the 5520 chip The 5520 chipset supports up to 36 PCI Express Gen2 lanes peer to peer read and write transactions The ICH1OR provides up to 7 PCI Express ports 6 SA TA ports and 10 USB connections In addition the In tel 5520 platform al so offers a wide range of RAS Reliability and Serviceability features These features include mem ory interface ECC x4 x8 Single Device Data Correction SDDC Cyclic Redun dancy Check CRC parity protection out of band register access via SMBus memory mirroring memory sparing and Hot plug support on the PCI Express Inter face The 5500 5600 Series Processor and 5520 Chipset e Four 5500 to six 5600 processor cores in each CPU with 8MB shared cache among the cores e Two full width Intel QuickPath interconnect links up to 6 4 GT s of data transfer rate in each direction e Virtualization Technology Integrated Management Engine supported e Point to point cache coherent interconnect Fast narrow unidirectional links and Concurrent bi directional traffic e Error detection via CRC and Error correction via Link level retry Themis Computer 1 Overview and Specifications 1 4 1 4 1 Special Features Recovery from AC Power Loss BIOS provides a setting for you to determine how the system will respond when AC power is lost and then restore
64. es C 16 Figure C 17 Optional Packages eis scce Ni 65 os coaccecsa te us Massa sities cas ecucestec aed ecsate ies atic C 17 Figure C 18 Option to Review or Continue cc cccccceceseceseceesceeseeceseceeeeeeeeeeaeeesseeneeesees C 18 Figure C 19 Installation Begins 4 isiccsdes ne hissce Mee teaneduatin sian ceneiiats ances C 18 Figure C 20 Installation is Complete ccccccsscsssecssssscssccesceseccssscssenseecessacsenneseacesacss C 19 Fi u re C 21 Login Soreness a aed ee a Pal Na ak A ck So ales Bal ae tet a C 20 Figure C 22 Ready to use th Desktopnia asic accideain edie ad eee ee eae C 20 Figure D 1 Remote On Off Switch Module cee ccccccessecesscecesececeseeecsseeeesseeeesseeeesas D 1 Figure E 1 RES Audio USB Serial Port Custom Module 00 ccecceeeceeseeseeeteeeeeeeeees D 1 Figure E 2 Install the RES Audio USB Serial Port Custom Module ceeeeeeeees D 2 Figure E 3 Attach the Appropriate I O Cables 00 cccecceceeseceseceeeeeeeeeeseeceteeneeneeeenneees D 3 Figure E 4 Dual USB Connector Pinouts 00 0 ccccecesscecssscecssececseceesseeeesseeeeseeesaeesenas D 4 Figure E 5 COMI Serial Connector Pinout cece ceccceeesseceteceeeeeeeeeeseecaecneeneeeenseees D 5 Figure E 6 Stereo Audio Connector Pinout 0 c ec cecceseceeseesseceseceeeeeeeeeeseecueeneeseeeeeaeees D 6 Figure F 1 Packaging Components 4 csnsetnaticendecrs oars GaneaGa E 2 Fig ure F 2 Order OF Assembly op 2is42615sesaces shaven te
65. es abhevecegtansestesesd cansadowaiadaesttentaniasteosueethietantedeenias 1 16 ESZT gt SHOCK ncia en ase etl ue ane A tne canal ed i 1 16 1 8 3 2 Electrostatic Discharge 5 045 5 sev uaetessatin suscaarecbas avon Gadus 1 16 eB Sid Noisean naar a ti sos ater a guawwinte de aes ota aa 1 16 1 9 Packaging and Slipping 0 c1ci nessa 2e cstv la tael acu Wae dancin a 1 18 EIT Accessory KA cesta enion E EE E ND ey ail elit Salt cheats 1 18 1 9 2 Rack Mount Slides Optional 00 2 cecceeceeeseeesseeseceeeeeeseeceaeeeeeneeeenseees 1 19 Themis Computer vii RES 32XR3 Installation Manual Configuration 1 Version 1 3 2 Installation and Operation isaiscissccssssocncasesnnvodaeonnsuensrdinsrsedvnassaneniaadsevansesteuteastanosnatsuales 2 1 2 1 Tnstall tion Proced res sedanina nin a a aaa 2 1 2 1 1 Remove Protective Top Cover ss ssessessessssssessseseosseessesresresseeseesrrssessesess 2 1 212 Memory Modules sssstorsroinre nien a e eee E E 2 3 PAPA Tistallation saosan n a n e a A ERE 2 4 DA Ss CRO AIS wea cia taka tensteids a date aa wapandiaiaeaidmeast ia vaania nants 2 7 2 41 31 Tnstaling Cards scchevciasessanhasastazsdacotatdetacsinsansiaraawacearmedasesiensintass 2 7 2A A Lithium Battery rta e a lel a E N E icin ase gteatat 2 8 2 1 4 1 Removing the Lithium Battery sacti s cacswapscd ccdosusoasandvdede snsdvesuse 2 8 2 1 4 2 Installing a Lithium Battery son cececcsasnstesscdisichmsn Weadesidenaness 2 9 21 5 SAS SATA I Storage
66. except the boot drive then connect ing the appropriate I O cables from the RES Audio USB Serial Port Custom Module to the external devices After the sto rage drive has been removed from the system cables from the internal RES motherboard are fed through the open drive slot and attached to the I O headers on the to p surface of the Custom Module PCB and the Module is inserted into the vacant drive slot see Figure E 2 Note that a RES 32XR3 FIO is shown in th is Appendix although the Modul e may be installed into any RES system Figure E 3 on page E 3 shows the inte rnal connections that are made between the RES Custom Module and the RES motherboard RES 32XR3 FIO x Ga a INNI 0 imm e After attaching header cables through a vacant drive slot to RES motherboard headers and optional rear panel audio I O connectors insert the RES Custom Module into the vacant drive slot RES Audio USB Serial Port Custom Module Figure E 2 nstall the RES Audio USB Serial Port Custom Module E 2 Themis Computer E Optional RES Audio USB Serial Port Module RES Audio USB Serial Port Custom Module E 1 1 Attach I O Cables Figure E 3 shows the three types of I O s upported by the RES Audio USB Serial Port Custom Module e USB Port A and Port B e One Serial Port e One optional Stereo Audio Jack installed only by customer request Figure E 3 also shows the header connectors th at are routed by cable thr
67. ff 1 8 PSM LED On 1 8 power cord retainer bracket 8 processor 1 2 Processor and Clock Options ACPI T State 3 10 Active Processor Cores 3 9 Adjacent Cache Line Prefetch 3 7 C1 Auto Demotion 3 9 CIE Support 3 9 C3 Auto Demotion 3 10 Clock Spread Spectrum 3 7 CPU Ratio 3 7 C State package limit setting 3 9 Execute Disable Bit Capability 3 8 Hardware Prefetcher 3 7 Intel C STATE Tech 3 9 Index 5 Themis Computer RES 32XR3 Installation Manual Configuration 1 Version 1 3 Intel EIST Technology 3 9 Intel TurboMode Technology 3 9 Intel Virtualization Technology 3 8 Machine Checking Feature 3 8 MPS and ACPI MADT Ordering 3 8 Simultaneous Multi Threading 3 8 Programmable I O 3 15 protective cover chassis 2 7 PS 2 keyboard A 7 PS 2 mouse 3 6 A 1 PXE 3 18 R rack mount brackets 2 rack mount slides 2 1 19 B 1 installation kit B 2 screw locations B rack mount slides optional 2 15 RAID 3 14 rear panel 1 4 Rear Panel I O 1 2 Red Hat Enterprise Linux C Remote Access Configuration Flow Control 3 19 Redirection After BIOS POST 3 19 Remote Access 3 19 Serial Port Mode 3 19 Serial Port Number 3 19 Sredir Memory Display Delay 3 20 Terminal Type 3 20 VT UTF8 Combo Key Support 3 20 Remote On Off Configuration D 1 Remote On Only Configuration D 2 Re Packaging for Shipment E Re Packing Instructions E l RES Audio USB Serial Port Custom Module D 1 RES Series Models Approximate Weights 1 19 RES 32X
68. fications e Updated section on System Power in Chapter 1 to reflect changes made in Table 1 7 e Added footnote in Table 2 stating that the RES XR3 17 07 Deep chassis mod els would be referred to as 17 Deep e Assorted minor edits and changes throughout the manual NGUS TON PA roses S ncn soon vhoecos phase code nua N November 2010 Added figures of both Standard and Front I O RES 32 Chassis in Preface Added Tables 2 and 3 in the Preface Removed section on Power Supply in Chapter 1 Added section on noise listed under 1 8 3 Environmental Colorized block diagram for the X8DTH iF 6F in Chapter 1 Added note in 1 8 2 1 System Power in regards to the wattage of pre installed power supplies Included Caution note under 1 9 Packaging and Shipping Added Table showing the Approximate Weights of the RES Series in Chapter 1 Added Appendices D and E Added Version number to the header of all even pages Assorted minor edits and changes throughout the manual Version Ue ees ccstrccrssiec bere cchahcsn isle van dadiv okie ri eeiacd rode December 2009 iii Themis Computer RES 32XR3 Installation Manual Configuration 1 Version 1 3 Safety Instructions To maximize user safety and ensure corr ect device operation all instructions con tained in this section should be read carefully Caution It is important that the user obs erve all warnings and instructions that are on the device and contained in this manual e
69. firmly pull the power supply from the chassis Caution When pulling the power supply from the chassis hold it at the bot tom to prevent it from falling and damaging the unit 2 1 7 2 Installing a Power Supply Perform the following steps to install a power supply 1 Insert the replacement power supply into an empty slot with the extraction handle facing to the right see Figure 2 12 on page 2 13 2 Push the power supply carefully into its slot until itis firmly seated a click will be heard when the locking lever is securely fastened to the chassis 3 Replace the power supply locking bracket and tighten the two captive Phillips screws see Figure 2 12 to secure both power supplies 2 14 Themis Computer 2 Installation and Operation 2 2 Rack Mounts 2 2 1 Mounting Brackets The rack mount brackets flanges are used to secure the chassis to the 19 rack see Figure 2 13 Handles are used to pull the RE S 32XR3 from the rack when rack mount slides have been installed on the sides of the chassis see following section Right Mounting Bracket Figure 2 13 Right Rack Mount Bracket 2 2 2 Rack Mount Slides Optional Rack Mount Slides can be mounted on each side of the RES 32XR3 for the purpose of sliding the unit in and out of a rack Mounting slides are optional and should be ordered at the time your system is purchased To learn how to install rack mount slides refer to A ppendix B Rack
70. ge xx A matrix describing 17 deep chassis configurations is given in Table 2 on page xx1 Figure 1 Rugged Enterprise Server Model RES 32XR3 Themis Computer RES 32XR3 Installation Manual Configuration 1 Version 1 3 Table 1 RES x2XR3 20 Deep Chassis Manual Matrix CPU RES 32XR3 RES 22XR3 Seen RES 12XR3 Category Motherboard Soc Manual Manual Manual kets Part Number Part Number Manual Part Number Part Number Configuration 1 padi 2 116790 024 116789 024 i X8DTH 6F X8DTi Configuration 2 X8DTi F 2 117022 024 117017 024 X8DTi LN4F X8DT3 Configuration 3 X8DT3 F 2 117023 024 117018 024 X8DT3 LN4F Configuration 4 X8DTN 2 117024 024 117019 024 Configuration 5 anh 2 117025 024 117020 024 g X8DA3 Configuration 6 X8DAH F 2 117026 024 117021 024 Configuration 7 X8DTU F 117280 024 116970 024 Naming Key X8Dvwxyz v A Sound chip no graphics chip T Graphics chip no sound chip Configuration 6 motherboard X8DAH F supports both audio and video however the naming key does not contain a T in the title w H Two Tylersberg Northbridge chips blank One Tylersberg Northbridge chip U Motherboard with cutout x SATA only 3 SAS 1 0 6 SAS 2 0 y LN4 Extra gigabit Ethernet controller for two extra ports z F IPMI blank No IPMI System RES x2XR3 where x 3 2 or 1 a All motherboards measure 12 W x 13 L
71. gned spe cifically for above average shock nad vibration environments The RES 32XR3 sup ports two Intel 1366 pin LGA 64 bit 5500 5600 Series Xeon processors each with a QPI Quick Path In terconnect up to 6 4 GT s Giga Transfers per Second supporting 192 GB of 1333 1066 800 MHz DDR3 ECC Re gistered memory mod ules Its computer graphics intensive and diverse I O capabilities are ideal for mili tary aerospace and commer cial telecommunications applications Motherboard options supported by Configuration 1 are listed in Table 1 1 on page 1 2 Figure 1 1 RES 32XR3 1 1 Themis Computer RES 32XR3 Installation Manual Configuration 1 Version 1 3 Table 1 1 RES 32XR3 Motherboard Options Configuration 1 Moth M PCl e PCI X and PCI Slots other lemory i 3 board IPMI SATA SAS Slots Graphics Audio pci e PCl e PCl e see Ss x16 x8 x4 X8DTH iF Yes Yes 12 Yes 7 X8DTH 6F Yes Yes Yes 12 Yes 7 a SuperMicro Computer Inc b All PCI e x8 in x16 slots The RES 32XR3 is designed within a 3R U high 5 25 form factor 20 50 8 cm deep and 17 43 2 cm wide which with mounting brackets fits a 19 wide rack Major features of Configuration 1 motherboards are listed in Table 1 2 Table 1 2 Major Features of the RES 32XR3 Feature Details Processor CPU e Two 1366 pin Intel Qua
72. hassis slot Left side top edge B and slide the top cover toward the rear until the top hooks and tabs clear all chassis slots Figure 2 1 Remove the RES 32XR3 Protective Access Cover 4 Proceed to the appropriate sect ion to install or replace a memory module page 2 3 PCI card page 2 7 or lithium battery page 2 8 2 2 Themis Computer 2 Installation and Operation Installation Procedures 2 1 2 Memory Modules The RES 32XR3 supports memory according to Table 2 1 Note the total memor y capacity varies according to the motherboard installed in the RES 32XR3 Table 2 1 RES 32XR3 Memory Capacity Memory Parameters Motherboard DDR3 Number Pins per Capacity Registered Speed MHz of DIMMS DIMM ECC X8DTH iF 192 GB Yes 1333 1066 800 12 240 X8DTH 6F 192 GB Yes 1333 1066 800 12 240 Caution Exercise extreme caution when in stalling or removing FBD Memory Modules to prevent any possible damage Table 2 2 RES 32XR3 Optimal Memory Population Two CPUs Installed CPU 1 CPU 2 DIMMs Branch 0 Branch 1 Branch 2 Branch 0 Branch 1 Branch 2 6 DIMMs 1A 2A 3A 1A 2A 3A 12 DIMMs 1A 1B 2A 2B 3A 3B 1A 1B 2A 2B 3A 3B When installing memory follow these rules for best memory performance e It is strongly recommended that you do not mix memory modules of different speeds and sizes If DIMMs of different speeds ha
73. horten execution cycles and maximize data proc essing efficiency Prefetching too fre quently can saturate the cache director y and delay necessary cach e accesses This feature reduces or increases the frequency in which the system prefetches data The options are 8 16 32 default 40 48 56 64 72 80 88 96 104 112 and 120 3 3 3 14 Intel VT d Select Enabled to enable Intel s V irtualization Technology support for Direct I O VT d by reporting the I O device assignm ents to VMM through the DMAR ACPI Tables This feature offers fully protected I O resource sharing across the Intel plat forms providing the user with greater reliability security and availability in net working and data sharing The settings are Enabled default and Disabled 3 3 3 15 Active State Power Management Select Enabled to start Activ e State Power Management for signal transactions between LO and L1 Links on the PCI Express Bus This maximizes power saving and transaction speed The options are Enabled and Disabled default 3 3 3 16 IOH PCI E Max Payload Size Some add on cards perform faster with th e coalesce feature which limits the pay load size to 128B while others witha payload size of 256B which inhibits the coalesce feature Please refer to your add on card user guide for the desired setting The options are 256B default and 128B Themis Computer 3 BIOS Setup Utility Advanced Setup Configurations
74. i a E O See ceiagva wee Meta nest uras taco a ea E 1 F 3 Instructions for Re Packing esesssseseesesessessesressressessessressessessresseestesresseeseseesseesee E 2 Indek eorna eee sede cere eee i EA Index 1 Reader Comment Card xiv Themis Computer Table of Contents List of Figures Figure 1 Rugged Enterprise Server Model RES 32XR3 ou ceeesesceseceeceteceseeneeeseeeeees xix Figure 2 Front View of a Standard Rear I O RES 32 Chassis Doors Removed xxii Figure 3 Rear View of a Standard Rear I O RES 32 Chassis cccesccesceeeseeteeeeteees xxiii Figure 4 Front View of a Front I O RES 32 Chassis cccccccscessceeseeesseceeeeeeeeeeeeeaeees xxiii Figure 5 Rear View of a Front I O RES 32 Chassis c ccccccssessseceseceseeeeseeeteeeeeenees xxiii Fi re 1 1 6 soe OD 4 De a na a a A Teeny ee rer tee 1 1 Figure 1 2 X8DTH iF X8DTH 6F Motherboard Block Diagram 0 eee eeeeeteees 1 3 Figure 1 3 External Features of RES 32XR3 Configuration 1 Front and Rear 1 4 Figure 1 4 Major Components of RES 32XR3 Configuration 1 Open Top View 1 5 Figure 1 5 RES 32XR3 System LEDs and I O Connectors Configuration 1 1 6 Figure 1 6 RES 22XR3 with Front Sound Baffle Installed Front View 66 1 16 Figure 1 7 RES 22XR3 with Rear Sound Baffle Installed Rear View ccccc08 1 17 Figure 2 1 Remove the RES 32XR3 Protective Access Covet cccccscees
75. ify the boot sequence from all available Storage Drives The settings are 1st boot device 2nd boot device and disabled e Ist Drive SATA XXXXXXXXX e 2nd Drive SATA XXXXXXXXX 3 31 Themis Computer RES 32XR3 Installation Manual Configuration 1 Version 1 3 3 5 3 3 5 4 3 5 4 1 Removable Drives This feature allows the user to specify the boot sequence from available Removable Drives The settings are 1st boot device 2nd boot device and Disabled Ist Drive USB XXXXXXXXX CD DVD Drives This feature allows the us er to specify the boot sequence from available CD DVD Drives i e Ist Drive 2nd Drive etc Retry Boot Devices If this item is enabled the BIOS will automatically attempt to boot from a specified boot device again after its in itial failure to boot The options are Enabled and Dis abled default Themis Computer 3 BIOS Setup Utility 3 6 Exit Options Select the Exit tab from the AMI BIOS Se tup Utility screen to enter the Exit BIOS Setup screen BIOS SETUP UTILITY Save Changes aml Exit Figure 3 5 Exit Options 3 6 1 Save Changes and Exit When you have completed the system confi guration changes select this option to leave the BIOS Setup Utility and reboot the computer so the new system configura tion parameters can take ef fect Select Save Changes a nd Exit from the Exit menu and press lt Enter gt 3 6 2 Discard Changes and Exit Select th
76. iie ainia 3 6 3 3 1 7 Hit Del Message Display cides ocesevetouteactvadacee data detect teartece 3 6 S348 Intetr pt 19 Captire dseiradiessanstesdenseotatonse staves teasanderiacnesdacstetvadeds 3 6 S 3159 Watch Dog FUNCOM siseses iatri er irto anan EK R aa EERE 3 6 3 3 1 10 Power Button Function ssssssesssssessessesesseseesessessesseseesesseseesessesees 3 6 3 3 1 11 Restore on AC Power Loss c Anastacia ent 3 7 3 3 2 Processor and Clock Options sssssssessseessessseseeseessessrsseesseeseeseesseessesresseesse 3 7 BD h CPU RIO oiae a anes Sas ata les a att a eee Soa 3 7 3 3 2 2 Clock Spread Spectrom setets covet Sectena casera suerte n ented oedd 3 7 3 3 2 3 Hardware Prefetcher Available when supported by the CPU eeeeeceeeceesteeeteeees 3 7 3 3 2 4 Adjacent Cache Line Prefetch Available when supported by the CPU 0 eeceeceeeceesseeeteeees 3 7 3 3 2 5 MPS and ACPI MADT Ordering cccccesssecssssscesnesseesncees 3 8 3 3 2 6 Machine Checking Feature Available when supported by the CPU ceceeeeeeeetseeeteeees 3 8 3 3 2 7 Intel Virtualization Technology Available when supported by the CPU e eect eeeeesseeeteeees 3 8 3 3 2 8 Execute Disable Bit Capability Available when supported by the OS and the CPU 3 8 3 3 2 9 Simultaneous Multi Threading Available when supported by the CPU eeeeeceeeceetteesteeees 3 8 32352210 Active Processor COLES yassaeaesiccstavosnateasincassa
77. imilar to the administrator account used on W indows NT machines The root account is used to install packages upgrade RPMs and perform most sys tem maintenance Logging in as root gives you complete control over your system see Figure C 15 on page C 15 C 14 Themis Computer C Red Hat Enterprise Linux 5 Installation Installation RED HAT ENTERPRISE LINUX 5 The root account Is used for administering the system Enter a password for the root user Root Password eeeees Confirm seeeres gt Release Notes Back gt Next 5 Figure C 15 Setting Up Root Account and Password Click Next Step 16 Now that you have made most of the choices for your installation you are ready to confirm the default package selection or customize packages for your sys tem The Package Installation Defaults screen appears and details the default package set for your Red Hat Enterprise Linux installation This screen varies depending on the version of Red Hat Enterprise Linux you are installing see Figure C 16 on page C 16 To customize your package set further select the Customize now option on the screen Clicking Next takes you to the Package Group Selection screen You can select package groups which group components together according to func tion for example X Window System and Editors individual packages or a com bination of the two C 15 Themis Computer RES 12XR3 Installatio
78. inout Signal Descriptions J8 and J9 J8 Signal Connected J8 Signal Connected J8 Signal Connected Pin Name to J9 Pin Pin Name to J9 Pin Pin Name to J9 Pin 1 DCD 1 4 RTS 7 7 DTR 4 2 DSR 6 5 TXD 3 8 RI 9 3 RXD 2 6 CTS 8 9 GND 5 Themis Computer E 5 RES 32XR3 Installation Manual Configuration 1 Version 1 3 E 1 2 3 Stereo Audio Ports Optional The RES Custom Module supports one optional Stereo Audio Out jack on the front I O panel see Figure E 6 The Stereo Audio Out pinout is listed in Figure E 6 header J1 pinout signal descrip tions are described in Table E 3 Stereo Audio Out Jack Left Line Out Right Line Out USB to Audio Chip Header Line In Header 5 Volts USB DM Line Out Left Line In Left USB DP Line Out Right Line In Right X No Connection DM Data Minus DP Data Positive Figure E 6 Stereo Audio Connector Pinout Table E 3 Stereo Audio Out Connector Pinout Signal Descriptions J1 Pin Signal Name Pin Signal Name Pin Signal Name 1 No Connection 4 Data Minus 7 Ground 2 5 volts 5 No Connection 8 Ground 3 No Connection 6 Data Plus 9 No Connection E 6 Themis Computer E Optional RES Audio USB Serial Port Module E 2 Ordering the RES Audio USB Serial Port Custom Module Because internal modifications must be made to the RES chassis in order to support the RES Audio US
79. ion Figure C 2 Skip Key Themis Computer C Red Hat Enterprise Linux 5 Installation Installation Step 3 Press Enter and you will see the Welcome screen Welcome screen does not prompt you for any input From this screen you can access the Release Notes for Red Hat Enterprise Linux 5 0 0 by clicking on the Release Notes button see Figure C 3 RED HAT ENTERPRISE LINUX 5 RED HAT ENTERPRISE LINUX 5 Capseaee notes Figure C 3 Welcome Screen Click on the Next button to continue Step 4 Using your mouse select a language to use for the installation The lan guage you select here will become the default langua ge for the operating system once it is installed Selecting the appropr iate language also helps tar get your time zone configuration later in the installati on The installation program tries to define the appropriate time zone based on what you specify on this screen see Figure C 4 on page C 4 C 3 Themis Computer RES 12XR3 Installation Manual Configuration 7 Version 1 3 Qni Hwi a Ai yuu a D z s T Sitees Me eiad bagage ter ie sys Engish USAI Additional Language a Ern usa gt Support Select aklinai languages 10 ihalal ui bhe esteem nigh nA pom were E Engen gion Seas iC _semess an etaul language e do language will be the language aroun d Korg Selec Datst Dray Used on the system once j m a installation is complete If you 1O Engish wiam
80. ion 4 NC No connection 12 SDA Display Data Channel Data 5 GND Ground 13 HSYNC Horizontal synchronization 6 GND Ground 14 VSYNC Vertical synchronization 7 GND Ground 15 SCL Display Data Channel Clock 8 GND Ground Themis Computer RES 32XR3 Installation Manual Configuration 1 Version 1 3 A 5 Gigabit Ethernet LAN Ports The RES 32XR3 supports two RJ45 Gigabit Ethernet LAN port connectors LAN 1 and LAN 2 each with two embedded LEDs see Figure A 4 Pinout signal descriptions are listed in Table A 5 Link Speed Network Traffic Figure A 4 Ethernet Connector Type RJ45 Table A 5 RJ45 Ethernet Pinout Signals Pin Signal Name Pin Signal Name 1 TRDO 5 TRD2 2 TRDO 6 TRD1 3 TRD1 7 TRD3 4 TRD2 8 TRD3 e The color of the left LED indicates the LAN connection speed Off 10 MHz Green 100 MHz Amber 1 GHz e The right LED when lit indicates LAN activity network traffic A 6 IPMI Dedicated LAN Port The single IPMI dedicated Ethernet LAN port on the RES 32XR3 rear I O panel has identical pinout and signal descriptions as the LAN and LA N 2 Ethernet ports described in the previous Section A 5 Gigabit Ethernet LAN Ports A 4 Themis Computer Appendix Rack Mount Slide Installation An optional set of two rack mount slides left side and right side is available for all RES 32 systems and should be ordere
81. is option to quit the BIOS Setup without making any permanent changes to the system configuration and reboot the computer Select Discard Changes and Exit from the Exit menu and press lt Enter gt 3 33 Themis Computer RES 32XR3 Installation Manual Configuration 1 Version 1 3 3 6 3 3 6 4 3 6 5 Discard Changes Select this option and press lt Enter gt to discard all the changes and return to the AMI BIOS Utility Program Load Optimal Defaults To set this feature select Load Optimal Defaults from the Exit menu a nd press lt Enter gt Then select OK to allow the AMI BIOS to automatically load Optimal De faults to the BIOS Settings The Optimal settings are designed for maximum system performance but may not work best for all computer applications Load Fail Safe Defaults To set this feature select Load Fail S afe Defaults from the Exit menu and press lt Enter gt The Fail Safe settings are desi gned for maximum system stability but not for maximum performance Themis Computer 3 BIOS Setup Utility 3 BIOS Recovery A Caution Do not upgrade the BIOS unless your system has a BIOS related issue Flashing the wrong BIOS can cause irreparable damage to the system In no event shall Supermicro and Themis Computer be liable for direct indirect special inci dental or consequential damages arising from a BIOS update If you need to update the BIOS do not shut down or reset the syste
82. l e 3 5 amperes 120 e 13 5 amperes 48 Input Current Vac Vde e 16 amperes 28 Vdc Input Frequency e 47 63 Hertz NA NA Input Voltage e 100 265 Vac e 40 72 Vdc e 18 36 Vdc p 9 internally fused internally fused internally fused Input VA Rating e 425 VA NA NA BTU Rating e 1447 BTU hour e 1447 BTU hour e 1447 BTU hour Power Factor e 0 99 NA NA Input Leakage Cur 35mA NA NA rent e Y Type e Y Type i ee Plug Type e IEC SVS5 4 or equivalent n 4 or equiva a Does not include plug in PCI cards b NA Not Applicable 1 8 2 1 J 1 8 2 2 System Power The RES 32XR3 operates with two N 1 redundant AC power supplies of 750 watts capacity each that auto range single phase AC input from 100 to 265 VAC 47 to 63 Hertz sources Filtered and fused internal AC is s upplied to each power supply from a front mounted power connection for Electrical Sp ecifications see RES 32XR3 Electrical Specifications on page 1 15 Two optional N 1 redundant DC power supplies of 750 watts each may be substi tuted for the AC power supplies This should be specified at the time of your order Note Some AC RES systems may be installed with 650 watt instead of 750 watt power supplies which should not affect the performance of the system Output Voltage The RES 32XR3 power supply provides output voltages that are split between 3 3V 5V 5Vsb 12V and 12V rails Themis Computer RES 32XR3 Installation Manua
83. l Configuration 1 Version 1 3 1 8 3 1 8 3 1 1 8 3 2 1 8 3 3 Front Sound Baffle J Environmental Shock The RES 32XR3 is designed to survive an elevated shock environment All struc tural components are welded together enabling the system to survive a maximum 3 axis shock load of 35G at 25 ms duration Electrostatic Discharge The RES 32XR3 is designed to tolerate electrostatic pulses up to 15 kilovolts KV with no impact on system operation Noise The RES 32XR3 conforms to the 54 db noise specification It is possible to achieve further noise reduction by installing a soun d baffle muffler on both the front see Figure 1 8 and the rear see Figure 1 7 on page 1 17 of the RES 32XR3 chassis Call your Themis representative for additional information Figure 1 6 and Figure 1 7 on page 1 17 illustrate sound baf fles installed on a RES 22XR3 chassis Sound baffle installation on the RES 32XR3 is similar Figure 1 6 RES 22XR3 with Front Sound Baffle Installed Front View Note All RES systems are shipped with BIOS fan speed set tothe quietest mode The default fan speed control mode of the RES 32XR3 is Energy Saving ES Themis Computer 1 Overview and Specifications Specifications Front Access Opening the two front doors of the RES 32XR3 requires removing the front sound baffle To do this loosen the two 2 captive knurled Phillips screws holding the baffle to the chassis see A in Figure
84. l Packages Click Next Step 18 Once you have selected the packag e groups of your choice you get one last chance to go back befo re starting the installation pr ocess Click Next if you re happy with your choices or click Back to make changes see Figure C 18 on page C 18 Themis Computer RES 12XR3 Installation Manual Configuration 7 Version 1 3 RED HAT ENTERPRISE LINUX 5 Click next to begin instaliation of Red Hat Enterprise Linux Server A complete fog of tne installation can be found in the file rootAnstall tog after rebooting your system A kickstart file containing the Installation options selected can be found in the file root anaconda ks cfg after rebooting the system D Berease Notes as Figure C 18 Option to Review or Continue Click Next Step 19 Installation Starts see Figure C 19 RED HAT ENTERPRISE LINUX 5 installing gllb2 2 12 3 2 1 6 386 2 MB A library of handy utitity functions jBetease Notes 7 l ihe Figure C 19 Installation Begins Themis Computer C Red Hat Enterprise Linux 5 Installation Installation Step 20 Congratulations Your Red Hat Enterprise Linux installation is now com plete The installation program prompts you to prepare your system for reboot Remember to remove any installation media if it is not ejected automatically upon reboot see Figure C 20 RED HAT ENTERPRISE LINUX 5 Congratulations the installati
85. llowing these steps 1 Cover workstations with approved anti static material Provide a wrist strap connected to a work surface and properly grounded tools and equipment Themis Computer RES 32XR3 Installation Manual Configuration 1 Version 1 3 2 Use anti static mats heel straps or air ionizers to give added protection 3 Handle electrostatic sensitive components boards and assemblies by the case or the PCB edge 4 Avoid contact with pins leads or circuitry 5 Turn off power and input signals befo re inserting and removing connectors or test equipment 6 Keep the work area free ofnon conductive materials suchas ordinary plastic as sembly aids and Styrofoam 7 Use field service tools such as cutters screwdrivers and vacuums that are con ductive 8 Always place drives and boards PCB assembly side down on the foam Instructions for the Lithium Battery vi Systems are equipped witha lithium battery installed on the mothe rboard To replace this battery please observe the instructions that are described in this man ual Warning There is a danger of explosion whenthe wrong type of battery is used as a replacement Themis Computer Table of Contents Safety Instructions 35554 aa is Asa ee eo ie Re IEA iv Prelate nenet e aE nates a Aa EAS xix 1 Overview and Specifications cc cece ccescccssscecssececsececececeececsseeeesseeeesseeeesseeeesas 1 1 LE OyervieW morana laden e
86. m while the BIOS is updating This is to avoid possible boot failure 3 7 1 3 2 How to Recover the AMIBIOS Image Main BIOS Block An AMIBIOS flash chip consists of a boot sector block a nd a main BIOS code block a main BIOS image The boot sect or block contains critical BIOS code including memory detection and recovery code to be used to flash a new BIOS image if the original BIOS Image is corrupted When the system is powered on the boot sector code executes first Once it is completed the main BIOS code will con tinue with system initialization and complete the bootup process Note BIOS Recovery described below is used when the main BIOS block crash es However when the BIOS Boot sectorcrashes you will need to send the moth erboard back to Supermicro for RMA repairs Boot Sector Recovery from a USB Device This feature allows the user to recove r a BIOS image using a USB device without additional utilities needed A user can download the BIOS image into a USB fla sh device and name the file SUPER ROM for the recovery process to load the file A USB flash device such as a USB Flash Drive a USB CDROM or a USB CDR W device can be used for this purpose 1 Insert the USB device that contains the new BIOS image the ROM files saved in a root directory into your USB drive 2 While turning the power on press and hold lt Ctrl gt and lt Home gt at the same time until the USB Access LED Indicator comes on Thi
87. mited This feature allows only limited fields to be viewed and changed by the user e No Access This feature prevents User from accessing the Setup Utility Change User Password Select this feature and press lt Enter gt to access the submenu and then type in a new User Password Clear User Password Available only when User Password has been set This item allows you to clear a user pass word after it has been entered The options are OK and Cancel Password Check Select Setup to allow the system to check for a password whenever it enters into the BIOS Setup Select Always to allow the sy stem to check for a user or supervisor password at each system boot The options are Setup default and Always Boot Sector Virus Protection When Enabled the AMI BIOS displays a warning when any program or virus issues a Disk Format command or attempts to write to the boot sector of the Storage Drive The options are Enabled and Disabled default Themis Computer 3 BIOS Setup Utility 3 5 Boot Configuration Use this feature to configure boot settings BIOS SETUP UTILITY gt Boot Device Priority Figure 3 4 Boot Settings Gel Boot Device Priority This feature allows the user to specify the sequence of priority for the Boot Device The settings are Ist boot de vice 2nd boot device 3rd boot device 4th boot device 5th boot device and Disabled 3 5 2 Storage Drives This feature allows the user to spec
88. n Manual Configuration 7 Version 1 3 To select a component click on the checkbox beside it RED HAT ENTERPRISE LINUX 5 The default installation of Red Hat Enterprise Linux Server includes a set of software Applicable for general internet usage What additional tasks would you like your system to Include support for Software Development Web server You can further customize the software selection now or after install via the software management application Customize jater Customize now i eon a Figure C 16 Package Installation Default Screen Step 17 Select each component you wish to install Once a package group has been selected if optional components are available you can click on Optional packages to view which packages are installed by default and to add or remove optional packages from that group see Figure C 17 on page C 17 If there are no optional components this button will be disabled Themis Computer C Red Hat Enterprise Linux 5 Installation Installation RED HAT ENTERPRISE LINUX 5 Desktop Environments a GNOME Desktop Environment Applications igo KDE K Desktop Environment Development Servers Base System Languages GNOME is a powerful graphical user interface which includes a panel desktop system icons and a grapiicat file manager 32 of 36 optional packages selected Optional packages pRetease Notes agak Next Figure C 17 Optiona
89. n to change the system time and date Highlight System Time or System Date using the arrow keys Key in new va lues through the keyboard and press lt Enter gt Press the lt Tab gt key to move between fields The date must be entered in Day MM DD YY format The time is entered in HH MM SS format Note The time is in the 24 hour format For example 5 30 P M appears as 17 30 00 Themis Computer RES 32XR3 Installation Manual Configuration 1 Version 1 3 3 2 2 3 2 3 3 2 4 3 4 Supermicro X8DTH e Version This item displays the BIOS revision used in your system e Build Date This item displays the date when this BIOS was completed Processor The AMI BIOS will automatically display the status of the processor used in your system e CPU Type This item displays the type of CPU used in the motherboard e Speed This item displays the speed of the CPU detected by the BIOS e Physical Count This item displays the number of processors installed in your system as detected by the BIOS e Logical Count This item displays the number of CPU Cores installed in your system as detected by the BIOS System Memory This displays the size of memory available in the system e Size This item displays the installed memory size detected by the BIOS Themis Computer 3 BIOS Setup Utility 3 3 Advanced Setup Configurations Use the arrow keys to select Advanced Setup and hit lt Enter gt to access the subme
90. ndles the boot disk function When this item is set to Enabled the ROM BIOS of th e host adaptors will c apture Interrupt 19 at boot and allow the drives that are attached to these host adaptors to function as bootable disks If this item is set to Di sabled the ROM BIOS of the host adaptors will not capture Interrupt 19 and the drives attached to these adaptors will not func tion as bootable devices The options are Enabled default and Disabled Watch Dog Function If enabled the Watch Dog Timer will allow the system to reboot when it is inactive for more than 5 minutes The options are Enabled and Disabled default 3 3 1 10 Power Button Function If set to Instant_Off the system will power off immediately when power button is Themis Computer 3 BIOS Setup Utility 3 3 1 11 3 3 2 3 3 2 1 3 3 2 2 3 3 2 3 3 3 2 4 Advanced Setup Configurations pressed If set to 4 Second Override the system will power of f when the user presses the power button for 4 sec onds or longer The options are Instant_Off default and 4 Second Override Restore on AC Power Loss Use this feature to set the power state after a power outage Select Power Off for the power to remain off after a power loss Select Power On for the power to be turned on after a power loss Se lect Last State to allow the sy stem to resume its last state before a power loss The options are Power On Power Off and Last State default Process
91. nds from a remote console Available options are Enabled default and Disabled Sredir Memory Display Delay This feature defines the lengt h of time in seconds to display memory information The options are No Delay default Delay 1 Sec Delay 2 Sec and Delay 4 Sec Hardware Health Monitor This feature allows the user to monitor system health and review the status of each item as displayed CPU Overheat Alarm This option allows the user to select the CPU Overheat Alarm setting which deter mines when the CPU OH alarm will be activated to provide warning of possible CPU overheat Caution 1 Any temperature that exceeds th e CPU threshold temperature pre defined by the CPU manufacturer may result in CPU overheat or system instability When the CPU temperature reaches this predefined threshold the CPU and system cooling fans will run at full speed 2 To avoid possible system overheating please be sure to provide adequate airflow to your system Themis Computer 3 BIOS Setup Utility Advanced Setup Configurations The options are e The Early Alarm Select this sett ing if you want the CPU overheat alarm including the LED and the buzzer to be triggered as soon as the CPU temper ature reaches the CPU overheat threshold as predefined by the CPU manu fac turer The Default Alarm Select this setting if you want the CPU overheat alarm including the LED and the buzzer to be triggered when the CPU temperat
92. ng for Microsoft Windows XP or a newer ver sion of the OS Select Legacy Ordering for Microsoft Windows XP or an older ver sion of OS The Options are Modern Ordering default and Legacy Ordering Machine Checking Feature Available when supported by the CPU Set to Enabled to activate the function of Machine Checking and allow the CPU to detect and report hardware machine errors viaaset of model specific registers MSRs The options are Disabled and Enabled default Intel Virtualization Technology Available when supported by the CPU Select Enabled to use the feature of Virtualization Technology to allow one platform to run multiple operating syst ems and applications in independent partitions creat ing multiple virtual systems in one physical computer The options are Enabled default and Disabled Note If there is any change to this setting you will need to power off and restart the system for the change to take effect Please refer to Intel s website for detailed information www intel com Execute Disable Bit Capability Available when supported by the OS and the CPU Set to Enabled to enable the Execute Disable Bit which will allow the pr ocessor to designate areas in the system memory where an application code can execute and where it cannot thus preventing a worm or a virus from floo ding illegal codes to overwhelm the processor or damage the system during an at tack The default is Enabled default Refe
93. nterface for c onfiguration control ACPI leverages the Plug and Play BIOS data structures while providing a processor architecture independent imple mentation that is compatible with Windows XP 2003 2008 Vista 7 Operating Sys tems Slow Blinking LED for Suspend State Indicator When the CPU goes into a suspend state the chassis power LED will start blinking to indicate that the CPU is in suspend mode When the user presses any key the CPU will wake up and the LED will automatically stop blinking and remain on Themis Computer 1 Overview and Specifications 1 6 2 Main Switch Override Mechanism Available with Configurations 1 2 3 and 4 see RES 32XR3 Motherboard Options Configuration 1 on page 1 2 When an ATX power supply is used the power button can function as a system sus pend button to make the system enter a SoftOff state The monitor will be suspended and the hard drive will spin down Pres sing the power button again will cause the whole system to wake up During the SoftOff state the ATX power supply provides power to keep the required circuitry in the system alive In case the system mal functions and you want to turn of f the power just press and hold the power button for 4 seconds This option can be set in the Power section of the BIOS Setup routine 1 7 Super I O Controller The Super I O chip storage drive adapter functions include e a floppy disk drive controller industry standa
94. nu items lool Feature Figure 3 2 Advanced Settings 3 3 1 Boot Features 3 3 1 1 Quick Boot If Enabled this option will skip certain tests during POST to reduce the time needed for system boot The options are Enabled default and Disabled 3 3 1 2 Quiet Boot This option allows the bootup screen options to be m odified between POST mes sages or the OEM logo Sel ect Disabled to display the POST messages Select Enabled to display the OEM logo inst ead ofthe normal PO ST messages The options are Enabled default and Disabled 3 5 Themis Computer RES 32XR3 Installation Manual Configuration 1 Version 1 3 3 6 3 3 1 3 3 3 1 4 3 3 1 5 3 3 1 6 3 3 1 7 3 3 1 8 3 3 1 9 AddOn ROM Display Mode This sets the display mode for Option ROM The options are Force BIOS default and Keep Current Bootup Num Lock This feature selects the Power on state for the Numlock key The options are Off and On default PS 2 Mouse Support This feature enables support for the PS 2 mouse The options are Disabled Enabled and Auto default Wait For F1 If Error This forces the sys tem to wait until the F 1 key is pressed if an error occurs The options are Disabled and Enabled default Hit Del Message Display This feature displays Press DEL tor un Setup during POST The options are Enabled default and Disabled Interrupt 19 Capture Interrupt 19 is the software interrupt that ha
95. o keep the BMC System log The options are OK default and Cancel Caution Any cleared information is unrecoverable Make absolutely sure that you no longer need any data stored in the log before clearing the BMC Event Log 3 3 13 Set LAN Configuration This feature allows the user to configure the IPMI LAN settings Themis Computer 3 BIOS Setup Utility Advanced Setup Configurations 3 3 13 1 Channel Number This feature allows the user to enter a channel number to be used for the IPMI LAN connection This is initially set to 01 default 3 3 13 2 Channel Number Status This feature returns the channel status for the Channel Number selected above Channel Number is OK or Wrong Channel Number 3 3 13 3 IP Address Source Select the source of this mach ine s IP address If Static is selected you will need to know and enter manually the IP address of this machine If DHCP is selected the BIOS will search fora DHCP Dynamic Host Configuration Protocol server in the network it is attached to and request the next available IP address The options are DHCP default and Static If Static is selected the following items will display IP Address Enter the IP address for this machine This should be in decimal and in dotted quad form The value of each three digit number separated by dots should not exceed 255 Subnet Mask Subnet masks tell the network which subne t this machine belongs to The value
96. of each three digit number separated by dots should not exceed 255 Gateway Address This is the IP address of the gateway in the network This is usually a router Mac Address The BIOS will automatically enter the Mac address of this machine however it may be over ridden Mac addresses are 6 two digit hexadecimal numbers Base 16 0 9 A B C D E F separated by dots i e 00 30 48 D0 D4 60 3 3 13 4 BMC Watch Dog Timer Action This feature allows the BMC to reset or power down the system if the operating sys tem hangs or crashes The options are Disabled default Reset Sys tem Power Down Power Cycle If this feature is notset to Disabled the following item will dis play 3 27 Themis Computer RES 32XR3 Installation Manual Configuration 1 Version 1 3 BMC Watch Dog TimeOut Min Sec This feature sets a timed delay in minutes or seconds before a system powers down or resets after an operating system failure is detected The options are 5 Min default 1 Min 30 Sec and 10 Sec 3 3 14 Event Log Configuration 3 3 14 1 View Event Log Use this option to view the System Event Log 3 3 14 2 Mark all events as read This option marks all events as read The options are OK default and Cancel 3 3 14 3 Clear event log This option clears the Event Log memo ry of all messages The options are OK default and Cancel 3 3 14 4 PCI Error Log Use this option to enable PCI Expres s error PERR
97. on is complete Remove any media used during the Installation process and press the Reboot button to reboot your system Beierse Notes KJ Reboot Figure C 20 Installation is Complete After your computer s normal power up sequence has completed the graphical boot loader prompt appears at which you can do any of the following things e Press Enter causes the default boot entry to be booted e Select a boot label followed by Enter causes the boot loader to boot the operat ing system corresponding to the boot label e Do nothing after the boot loader s timeout period by default five seconds the boot loader automatically boots the default boot entry Do whatever is appropriate to boot Red Hat Enterprise Linux One or more screens of messages should scroll by Themis Computer RES 12XR3 Installation Manual Configuration 7 Version 1 3 Step 21 Eventually a login prompt or a GU I login screen if you installed the X Window System and chose to start X automatically appears see Figure C 21 RED HAT ENTERPRISE LINUX 5 Username Language star Shut Down Figure C 21 Login Screen Step 22 Once logged in you are ready to use the desktop see Figure C 22 F Applications Places System GG 2 45PM B Le Figure C 22 Ready to use the Desktop C 20 Themis Computer Appendix Optional Remote On Off Switch D 1 Remote On Off Configuration Customers intere
98. only uses Red Hat Enterprise Linux you should choose the MBR Click the Change Drive Order button if you would like to rearrange the drive order or if your BIOS does not re turn the correct drive orde r Changing the drive order may be useful if you have multiple SCSI adapters or both SCSI and IDE adapters and you want to boot from the SCSI device Click Next Themis Computer RES 12XR3 Installation Manual Configuration 7 Version 1 3 Step 12 The installation program automatica lly detects any ne twork devices you have and displays them in the Network Devices list see Figure C 12 RED HAT ENTERPRISE LINUX 5 Network Devices Active on Boot Device iPv4 Netmask IPv Prefix Edit Hostname Set the hostname automatically via DHCP 3 manually rmetS tocatdomain e g host domain com Miscellaneous Settings B Retease Notes Back gt Next Figure C 12 Network Devices List Step 13 Once you have selected a network device click Edit From the Edit Inter face pop up screen you can choos e to configure the IP address and Netmask for IPv4 Prefix for IPv6 of the device via DHCP or manually if DHCP is not selected and you can choose to activate the device at boot time If you select Activate on boot your network interface is started when you boot see Figure C 13 on page C 13 If you do not haveDHCP client access or you are unsure what to provide here please contact your network administrator
99. or and Clock Options This submenu allows the user to configure the Processor and Clock settings CPU Ratio If set to Manual this option allows the user to set the ratio between the CPU Core Clock and the FSB Frequency The options are Auto default and Manual Note If an invalid ratio is entered the A MI BIOS will restore the setting to the previous state Clock Spread Spectrum Select Enable to use the feature of Clock Spectrum wh ich will allow the BIOS to monitor and attempt to reduce the level of Electromagne tic Interference caused by the components whenever needed The options are Disabled default and Enabled Hardware Prefetcher Available when supported by the CPU If set to Enabled the hardware prefetcher will prefetch streams of data and instruc tions from the main memory to the L2 cache in the forward or backward manner to improve CPU performance The options are Disabled and Enabled default Adjacent Cache Line Prefetch Available when supported by the CPU The CPU fetches the cache line for 64 bytes if this option is set to Disabled The CPU fetches both cache lines for 128 bytes as comprised if Enabled default 3 7 Themis Computer RES 32XR3 Installation Manual Configuration 1 Version 1 3 3 8 3 3 2 5 3 3 2 6 3 3 2 7 3 3 2 8 3 3 2 9 MPS and ACPI MADT Ordering This feature allows the user to decide how to order the Multiple APIC Description Table MADT Select Modern Orderi
100. ort connectors see Figure A 1 for a connector pinout USB 0 and USB 1 on the rear I O panel Pinout signal descriptions are listed in Table A 2 Figure A 1 USB Connector Pinout Table A 2 USB Connector Pinout Signal Descriptions Pin Signal Name Pin Signal Name 1 5V 3 PO 2 PO 4 GND A 3 Serial Port The RES 32XR3 supports one male DB9 serial port connector on the rear I O panel see Figure A 2 TTYA COM 1 COM 1 pinout signal descriptions are listed in Table A 3 1 5 CRY 6 9 Figure A 2 COM 1 Serial Connector Pinout Table A 3 COM 1 Serial Connector Pinout Signal Descriptions Pin Signal Name Pin Signal Name Pin Signal Name 1 DCD 4 DTR 7 RTS 2 RXD 5 GND 8 CTS 3 TXD 6 DSR 9 RI A 2 Themis Computer A Connector Pinouts A 4 SVGA Monitor Port A Super VGA connector is installed on the RES 32XR3 on the rear I O panel A pinout for this connector is givenin Figure A 3 and connector pin signals are described in Table A 4 Symbol SVGA Display Port 10 6 oa 15 11 Figure A 3 RES 32XR3 SVGA Connector Pinout Table A 4 RES 32XR3 SVGA Connector Pin Signals Pin VGA Signal Description Pin VGA Signal Description 1 RED OUT Red signal output 9 VCC Filtered Vcc voltage source 2 GREEN OUT Green signal output 10 GND Ground 3 BLUE OUT Blue signal output 11 NC No connect
101. ough the empty drive slot into the RES system for connection to the proper RES motherboard surface headers or optional rear audio connectors To RES Motherboard surface top side headers To Rear of Chassis i Optional Connected to any available USB header USB Serial USB to Audio Out Audio In Connected to any available Serial header Header Header Audio Chip Line Out Line In Connected to any available USB header J10 J8 J1 Connected to an audio connector on the rear of the chassis vee Out ANN TE Wn NA Connected to an audio connector on the rear of the chassis Line In The RES Custom Module contains an Audio chip on its PCB routed to J1 PCB Printed Circuit Board e Attach the appropriate I O Cables from the RES Custom Module SS to external devices Port A USB Ports A and B DB9 Serial Port J9 Stereo Audio Out Jack Optional Figure E 3 Attach the Appropriate I O Cables E 3 Themis Computer RES 32XR3 Installation Manual Configuration 1 Version 1 3 If the RES Audio USB Serial Port Custom Module is removed from its drive slot it is recommended that the end of the moth erboard I O cable attached to the Module header be appropriately tagge d so that it can be corr ectly reconnected when the Module is reinstalled If the I O cable is removed from its motherboard header it should also be appropriately tagged for proper reconnection at a later time E 1 2 Connector Pinouts
102. pace on selected drives and create Gefaull loyout Create custom layout Advanced storage configurator Heyliw and modify partitioning layout B Release Notes Back Next Figure C 8 Reviewing Option Click Next once you have made your selections to proceed Step 9 If you chose one of the automatic partitioning options and selected Review you can either accept the current partition settings click Next or modify the setup using Disk Druid the manual partitioning tool If you chose to create a custom layout you mu st tell the installation program where to install Red Hat Enterprise Linux This is done by defining mount points for one or more disk partitions in which Red Hat Enterprise Linux is installed Y ou may also need to create and or delete partitions at this time see Figure C 9 on page C 9 Themis Computer C Red Hat Enterprise Linux 5 Installation Installation RED HAT ENTERPRISE LINUX 5 Drive dev sda 10237 MB Model VM VMware Virtual 5 aa fie O New Eat Delete Rezet RAD LVM Device CO cut Ype Format ord Start End v LVM Volume Groups VolGroupoo 10080 Logvoldl swap 1984 Logvolde ext3 8096 SMart Drives is _ Hide RAID device LVM Volume Group members pRetease Notes Back gt Next Figure C 9 Creating a Custom Layout Click Next Step 10 Once you have configured your partitions set up a boot loader If you select No Boot Lo ader will be Installed
103. per Terminal for the Windows operating systems and minicom for Linux FreeSBD etc e A Null modem serial cable How to use Serial Flash for Boot Sector Recovery 1 Connect a Null_ modem serial cable betw een the target system and the host system that runs the terminal program 2 Make sure that the new BIOS Image file is accessible for the host system 3 Start the terminal program on the host system and create a new connection Themis Computer 3 BIOS Setup Utility BIOS Recovery 4 Use the following communication parameters for the new connection e Bits per second 115200 bits sec e Data Bits 8 e Parity None e Stop Bit 1 e Flow Control None 5 Power on your system and click the lt Gonnect gt button in the Hyper Terminal The terminal screen will display the following messages allah ad tae iets ad ae a Nahe Press lt SpaceBar gt to update BIOS alda a tte valde vas Mata saad Confirm update BIOS y n y Sod he oneal eect le oe ate s Begin remote BIOS flash y n y E A E at tancabed aide dante E ak Starting remote flash PEE Upload new BIOS file using Xmodem protocol 6 Following the instructions given on the screen to update the BIOS These instructions are also shown below a At the prompt press the lt SpaceBar gt to update the BIOS b When asked to confirm BIOS updati ng press lt y gt to confirm BIOS up dates c Press lt y gt again
104. play Starting FLASH Recovery NVRAM data will be destroyed CMOS data will be preserved Ending FLASH Recovery FLASH Update completed successfully Rebooting Figure 3 8 Flash Recovery 9 Once remote BIOS flash is completed the system will reboot Note AMIBIOS Serial Flash will work with any terminal communications pro gram that supports VT 100 and XModem protocols including protocols designed for GNU LINUX amp BSD operating systems such as minicom It is recommended that the terminal program be configured to use the CR LF style of line termina tion F 3 39 Themis Computer RES 32XR3 Installation Manual Configuration 1 Version 1 3 3 40 Themis Computer Appendix Connector Pinouts This appendix provides connector pinouts for all standard user I O interfaces on the rear I O panel of the RES 32XR3 A 1 PS 2 Keyboard and Mouse The RES 32XR3 provides a 6 pin female mini DIN connector for the PS 2 key board and another for the PS 2 mouse Si gnals for both conne ctors are defined in Table A 1 Table A 1 PS 2 Keyboard Mouse Pinout and Signal Descriptions Pin Signal Name 1 Keyboard mouse data 2 N C 5 6 3 Ground 3 4 4 Vcc gt z 5 Keyboard mouse clock 6 N C A 1 Themis Computer RES 32XR3 Installation Manual Configuration 1 Version 1 3 A 2 USB Ports The RES 32XR3 supports two USB Univers al Serial Bus p
105. pounds 19 kg See Table 1 8 on page 1 19 for a general weight table for all models of the RES Series The approximate weight of a manual and associated shipping paperwork is one pound 0 5 kg Therefore both the shipping container and a fully in stalled RES 32XR3 including power cords manual and associated paperwork weigh under 52 pounds 23 6 kg Caution Do not discard the original packaging in which your system was shipped The original packaging was designed specifically to withstand the stress and rigors of today s shipping environment It will be needed in the event the system must be shipped back to Themis Computer For re packing instructions refer to Appendix E Re Packaging for Shipment 1 9 1 Accessory Kit Each RES 32XR3 is packaged with an A ccessory Kit consisting of the following items A A Power cord Retainer Bracket B Two AC Power Cords C Two Storage Drive Barrel Keys When you unpack the RES 32XR3 please verify that all of these items are included If any of these items are missing or not as pictured please call Themis T echnical Support at 510 252 0870 or send an email to support themis com To learn how to secure the AC power co rds and the power cord retainer bracket refer to Section 2 3 1 Plugging in the AC Power Cords on page 2 16 Themis Computer 1 Overview and Specifications Packaging and Shipping 1 9 2 Rack Mount Slides Optional Rack Mount Sli
106. r to Intel and Microsoft Web Sites for more information Simultaneous Multi Threading Available when supported by the CPU Set to Enabled to use the Simultaneous Multi Threading T echnology which will result in increased CPU performance e The options are Disabled and Enabled default Themis Computer 3 BIOS Setup Utility Advanced Setup Configurations 3 3 2 10 Active Processor Cores Set to Enabled to use a processor s Second Core and beyond Please refer to Intel s web site for more information The options are All default 1 and 2 3 3 2 11 Intel EIST Technology EIST Enhanced Intel SpeedS tep Technology allows the system to automatically adjust processor voltage and core frequenc y in an effort to reduce power consump tion and heat dissipation P lease refer to www intel com for detailed information The options are Disabled and Enabled default 3 3 2 12 Intel TurboMode Technology Select Enabled to use the Turbo Mode to boost system performance The options are Enabled default and Disabled 3 3 2 13 C1E Support Select Enabled to use the feature of Enhanced Halt State C1E significantly reduces the CPU s power consumption by reducing the CPU s clock cycle and voltage during a Halt State The options are Disabled and Enabled default 3 3 2 14 Intel C STATE Tech If enabled C State is set by the system automatically to either C2 C3 or C4 state The options are Disabled and Enabled
107. ration 1 2 Themis Computer 1 Overview and Specifications Overview DDR3 hig DDR3 800 1066 1333 i z g 800 1066 1333 Processor 2 Processor 1 E a oa 5500 Series 5500 Series fo Ports 1 amp 2 Ports 3 amp 4 1 api Intel 5520 _ Intel5520 e sree 10H2 36D 10H1 36D gt Ports 384 Ports 7 amp 8 Ports 5 amp 6 Ports 7 amp 8 PORE XS Ports 9 amp 10 Ports 9 amp 10 Optional U3H1 PCI E X4 ESI Ports 1 amp 2 Se aa LAN LAN2 Intel 82576 pi LAN1 4 SPI BIOS P SMLENA SATA2 RMIL_IPMI E E Intel 3 nte 6 FRONT ICH1OR USB2 0 ey 2 REAR 4 FRONT 1 TYPE A LPC BUS PCI 33MHz E RTL8201N rma IPMI LAN sio U25 W83527HG Note SAS is supported directly from the motherboard on the X8DTH 6F only COM1 om External Figure 1 2 X8DTH iF X8DTH 6F Motherboard Block Diagram Themis Computer RES 32XR3 Installation Manual Configuration 1 Version 1 3 CD RW DVD ROM 1 3 5 Floppy Disk Drive Optional Combo Slimline Drive or 2 88 MB DAT Drive Optional Remove Blank Cover Plate System Power Front View Doors Removed ON OFF Switch I A AAANAAEAIMINUNI taped tote er T r MM o eee fi 3RU Storage Drive total of 8 Front LED Indicator Panel SAS or SATA Il see Figure 1 5 on page 1 10 q 17 42 7 cm 19 with Rack Mounts gt SAS is supported directly from the
108. rd 82077 765 compatible e a data separator e write pre compensation circuitry e decode logic e data rate selection e clock generator e drive interface control logic e interrupt and DMA logic The wide range of functions integrated onto the Super I O greatly reduces the num ber of components required for interfacing with floppy disk drives The Super I O supports 360K 720K 1 2M 1 44M or 2 88M disk drives and data transfer rates of 250 Kb s 500 Kb s or 1 Mb s It also provides two high speed 16550 compatible serial communication ports UARTs Each UART includes a 16 byte send receive FIFO a programmable baud rate generator complete modem control and a processor interrupt system Both UARTs provide legacy speed with baud rate up to 1 15 2 Kbps and an advanced speed with baud rates of 250K 500K or 1 Mb s for higher speed modems The Super I O provides functions that comply with ACPI Advanced Configuration amp Power Interface which includes support of legacy and ACPI power management through an SMI or SCI functi on pin It also features auto power management to reduce power consumption Themis Computer RES 32XR3 Installation Manual Configuration 1 Version 1 3 1 8 1 8 1 1 14 Specifications General Table 1 6 lists general specifications for the RES 32XR3 Table 1 6 RES 32XR3 General Specifications Parameter Description Dimensions e 5 25 3RU high e 17 43 2 cm wid
109. rds 2 7 Intel 5520 chipset 2 Intel Xeon CPU 1366 pin 2 Intel s SATA RAID 3 14 Intelligent Platform Management Interface 3 25 IPMI A 4 IPMI Configuration IPMI Firmware Revision 3 25 Status of BMC 3 26 IRQ 3 19 iSCSI 3 18 K keys front bezel 7 18 L L2 cache 3 7 LAN port A 4 latch locks 1 4 LEDs 1 6 NIC Gb Ethernet 7 SAS SATA storage drives HDD 2 7 system 1 4 Linux 5 Installation C Linux Installation 2 17 C 1 Creating a Custom Layout C 9 Edit Interface Pop Up Screen C 13 Enter Installation Number C 6 Index 4 Installation Begins C 18 Installation is Complete C 19 Language Selection C 4 Login Screen C 20 Master Boot Record MBR C J Network Devices List C 2 Option to Review or Continue C 8 Optional Packages C 17 Package Installation Default Screen C 6 Partitioning C 7 Power On C 2 Ready to use the Desktop C 20 Reviewing Option C 8 Selecting Layout Type C 5 Selecting Time Zone C 4 Setting Up Boot Loader C 10 Setting Up Root Account and Password C 15 Skip Key C 2 Welcome Screen C 3 Linux Installation Guide C lithium battery 2 7 installation 2 9 lithium battery and socket illustration of 2 8 removal 2 8 M MADT 3 8 Main BIOS Setup Screen 3 3 Major Components of the RES 32XR3 Configu ration 1 1 5 Manual Part Number ii memory l 2 Memory Mode Channel Mirror 3 11 Independent 3 11 Lockstep 3 11 Sparing 3 11 memory modules DDR3 FBD 2 4 minicom 3 36 mini DIN A 1 MSRs 3 8
110. s Instructions regarding safety precautions during installation operation or maintenance of the equipment are given in the section entitled Safety Instructions on page iv WARNINGS and CAUTIONS The definitions of WARNINGS and CAUTIONS as used in this document are given in the Preface in the section entitled Notes Cautions Warnings and Sidebars Themis Customer Support North America South America and Pacific Rim Telephone 510 252 0870 Fax 510 490 5529 E mail support themis com Web Site http www themis com RES 32XR3 Installation Manual Configuration 1 Version 1 3 June 2011 Part Number 116790 024 RES 32XR3 Installation Manual Configuration 1 Version Revision History AIOS a E E oiscccisaiccc ds sicen E esses E une Added Part Number 118188 024 to Table 2 on page xxi Updated all references to maximum system memory Added Chapter Appendix number to header of all Odd pages Added clarifying remarks and footnote to Table 1 2 on page 1 2 regarding SAS SATA Added Table 1 4 Power Supply LED Behavior on page 1 8 Revised Chapter 3 BIOS Setup Utility to reflect current version of the AMI BIOS for the X8DTH iF 6F motherboard Revised Chipset Overview page 1 10 to reflect current specs of the X8DTH iF 6F motherboard Added Appendix E Optional RES Audio USB Serial Port Module 2 ccd 0 Rae Fe SaO November 2010 e Updated Table 1 7 RES 32XR3 Electrical Speci
111. s If the handle isclosed before thedrive is fully inserted the latch mechanism Caution When in the closed position the la tch handle secures the drive to the may not fully engage to secure the drive Themis Computer RES 32XR3 Installation Manual Configuration 1 Version 1 3 2 1 6 Removable 120 mm Fan The RES 32XR3 contains two high speed 120 mm fans Both fans are removable for replacement in case of a fan failure Note Since RES 32XR3 fans are hot swappable it is not necessary to turn off system power in order to remove and replace a fan 2 1 6 1 Removing and Installing a 120 mm Fan Perform the following steps to remove and install a 120 mm fan 1 On the top cover of the chassis push the fan lid lock left to unlock the fan lid see Figure 2 11 Pull the fan lid upward exposing the two 120 mm fans 2 Each fan is secured by a locking latch on the left hand side To remove a fan press the latch lock toward the center ofthe fan with theleft hand index finger With the right hand index finger press on the right hand side of the fan and pull the fan directly upward from the RES 32XR3 chassis Hinged Fan Lid Locking Stud 1 of 3 120 mm Fan x NN Lid Lock Figure 2 11 The Dual RES 32XR3 120 mm Fans 120 mm Fan Latch Lock 3 When the fan is removed its 4 wire connector will automatically disconnect from the chassis Insert the replacement fan carefully into the empty fan slot until it is flu
112. s by refastening the top cover removed in Section 2 1 1 Remove Protective Top Cover on page 2 1 2 1 4 Lithium Battery 2 1 4 1 Removing the Lithium Battery Perform the following steps to remove the lithium battery 1 Make sure the system is powered off see Operation on page 2 16 2 Locate the lithium battery socket and squeeze the latch see A Figure 2 7 together until the battery lifts out of its socket A To release squeeze battery latch together B Figure 2 7 The RES 32XR3 Lithium Battery and Socket 2 8 Themis Computer 2 Installation and Operation Installation Procedures 3 Remove the old battery and replace with a new battery see next section Note The battery location is dependent on which motherboard is in stalled in the chassis 2 1 4 2 Installing a Lithium Battery Perform the following steps to insert a new lithium battery 1 Tilt the replacement battery into the empty socket so tht it is angled under the battery latch see B Figure 2 7 2 Carefully press down on the battery until it clicks firmly into place 2 1 5 SAS SATA II Storage Drive Perform the following steps to remove a nd install a S torage Drive which may be either SAS X8DTH 6F motherboard only or SATA II The front doors of the RES 32XR3 must be unlocked and opened to access the Storage Drives see Figure 2 8 EE TOC BELLE LLL LL ee P p T Figure 2 8 Opening the RES 32XR3 Front Be
113. s are 16 32 64 default and 128 PCI IDE BusMaster When enabled the BIOS uses PCI bus mastering for reading writing to IDE drives The options are Disabled and Enabled default SR IOV Supported Select Enabled to allow Single Root I O Virtualization SR IOV support which works in conjunction with the Intel V irtualization Technology allowing multiple operating systems to run simultaneously within a single computer via native sharing of the PCI Express devices in order to enhance network connectivity and perfor mance The options are Enabled and Disabled default 3 17 Themis Computer RES 32XR3 Installation Manual Configuration 1 Version 1 3 3 3 5 7 3 3 5 8 3 3 5 9 PCI E Slots 1 7 x8 This feature allows you to Enable or Disa ble any of the PCI slots The options are Enable default and Disable Onboard LAN Options ROM Select This feature allows the user to select the onboard LAN option ROM type The options are iSCSI and PXE default Load Onboard LAN1 Option ROM Load Onboard LAN2 Option ROM Select Enabled to enable the onboard LAN1 or LAN2 Option ROM This is to boot the computer using ane twork interface The opt ions are Enabled and Disabled default 3 3 5 10 Load Onboard SAS Option ROM 3 3 5 11 3 3 6 3 3 6 1 Select Enabled to enable the onboard SAS Option ROM This is to boot computer using a network interface The options are Enabled default and Disabled Boot Graphics A
114. s item is set to Enabled APIC ACPI SCI IRQ is supported by the system The options are Enabled and Disabled default 3 23 Themis Computer RES 32XR3 Installation Manual Configuration 1 Version 1 3 3 3 9 6 3 3 9 7 3 3 9 8 3 3 9 9 3 3 10 Headless Mode This feature is used to enable system to function without a keyboard monitor and or mouse attached The options are Enabled and Disabled default High Performance Event Timer Select Enabled to activate the High Performance Event Timer HPET that produces periodic interrupts at a much higher frequency than a Real time Clock RTC does in synchronizing multimedia streams pr oviding smooth playback and reducing the dependency on other timestamp calculation devices such as an x86 RDTSC Instruc tion embedded in the CPU The High Perfor mance Event Timer is used to replace the 8254 Programmable Interval Timer The options are Enabled default and Dis abled NUMA Support Select Enabled to enable Non Unifor m Memory Access support for an NUMA Aware OS to improve CPU performance Select Disabled to provide better memory access for an non NUMA OS Select NUMA for SLES 11 for better CPU perfor mance on a SUSE Linux Enterprise Server 11 The options are Enabled default Disabled and NUMA for SLES 11 WHEA Support Select Enabled to activate Windows Hardware Error Architecture WHEA support which will provide a common infrastructure for the system to
115. s might take a few seconds Themis Computer RES 32XR3 Installation Manual Configuration 1 Version 1 3 3 Once the USB drive LED is on release the lt Ctrl gt and lt Home gt keys AMI BIOS will issue beep codes to indicate that the BIOS ROM file is being updated 4 When BIOS flashing is completed the computer will reboot Do not interrupt the flashing process until it is completed 3 7 3 Boot Sector Recovery from an IDE CD ROM This process is almost identical to the process of Boot Sector Recovery from a USB device except that the BIOS image file is loaded from a CD ROM Use a CD R or CD RW drive to burn a CD with the BIOS image file init and na me the file SUPER ROM for the recovery process to load the file 3 7 4 Boot Sector Recovery from a Serial Port Serial Flash This process also known as Serial Flash allows the user to use a serial port to load a BIOS image for Boot Sector recovery This feature is usually used for embedded systems that rely on a serial port for remote access and debugging 3 7 4 1 Requirements In order to use Serial Flash for Boot Sector Recovery you will need to meet the fol lowing requirements e The Target system the system that needs BIOS updates must have a serial port and Serial Flash support embedded in the BIOS image file e The Host system should also have a se rial port and a terminal program that supports Simple Transfer protocol Hy
116. s the user decide which serial port to be used for Console Redirec tion The options are COM 1 and COM 2 default Base Address IRQ This item displays the based address and IRQ of the serial port specified above The default setting for COM 1 is 3F8 IRQ4 default and for COM 2 is 2F8 IRQ3 default Serial Port Mode This feature allows the user to set the serial port mode for Console Redirection The options are 115200 8 n 1 default 57600 8 n 1 38400 8 n 1 19200 8 n 1 and 9600 8 n 1 Flow Control This feature allows the user to set the flow control for Console Redirection The options are None default Hardware and Software Redirection After BIOS POST Select Disabled to turn of f Console Redirection after Power On Self Test POST Select Always to keep Console Redirection active all the time after POST Themis Computer 3 19 RES 32XR3 Installation Manual Configuration 1 Version 1 3 J 3 3 7 6 3 3 7 7 3 3 7 8 3 3 8 3 3 8 1 Select Boot Loader to keep Console Redirection active during POST and Boot Note This setting may not be supported by some operating systems Loader The options are Disabled Boot Loader and Always default Terminal Type This feature allows the user to select the target terminal type for Cons ole Redirec tion The options are ANSI VT100 default and VT UTF8 VT UTF8 Combo Key Support A terminal keyboard definition that provides a way to send comma
117. scsonanasataoyesiecsdatices spbauecanseavolaseesdeastetowntss tains 3 34 3 6 5 Load Fail Safe Defaults 5c at auteasyccctecab acces tour aeercrsncaceneeueeaianccaeeneat 3 34 3 7 BIOS Recovery cscs iscciesisipicticcsevceashsdecgiinsjonas ssdoncdhseai ahs teams aaa aeons 3 35 3 7 1 How to Recover the AMIBIOS Image Main BIOS Block 3 35 3 7 2 Boot Sector Recovery from a USB Device 0 ee eecceetseeeteceneeeeeeeeseees 3 35 3 7 3 Boot Sector Recovery from an IDE CD ROM 0 0 ecccecceeceeereeeteeeeeeees 3 36 3 7 4 Boot Sector Recovery from a Serial Port Serial Flash wo 3 36 Sol R quiem soma nten ia i Cason SiN hr cdai EN 3 36 Appendix A Connector Pinouts 2 0 0 0 ccc cccccceescecssscecssececsseecssceeceseeecsseeecseeecseeeenaes A 1 A l PS 2 Keyboard and Mouse ss sossssnseesessseesseserssressessrssressessrssressessresessessessessresseese A 1 A2 USB POTIS oren aad e eA E E E N E E E E A 2 IE S E T POEL ATE A AE EE E E caedan due A 2 PALA SVGA Mo itor Poft ez ccs cazacc ican cediee te acenacaaun cused a E A A A 3 AS Gigabit Ethernet LAN Ports s 6asdns cueinicnsieisdaad i E EA A 4 Ab IPMI Dedicated LAN Poit gals ccciean eth yeras atacand ncn acai A 4 Appendix B Rack Mount Slide Installation 0 0 0 0 ccc cecceeceeceeeceeneeceeeeeseeenaeenes B 1 Appendix C Red Hat Enterprise Linux 5 Installation 000 0 ccc ccccceeceeeteeeensees C 1 C1 Introduction tes eth ca Sal itt otc te lia aerate aang Tea al cache ta tos
118. secsseeeeeeeeeeseens 2 2 Figure 2 2 Remove the Air Flow Deflector ScrewWS cc ce cccccecesssecesscessseecsseeecsseeeesseeeeeaes 2 4 Figure 2 3 Memory Module Slot Locations 00 cee eeeeeseeecesecesececeeseeseeeaeeeeeeeeesecaeeneeees 2 5 Figure 2 4 Memory Module Removal cceccccccccesecesecseseeeeeeeeeeeeeeeseecsaeeneeeeeeeenseeeaeens 2 6 Figure 2 5 PCI Card Installation Configuration 1 0 0 eee ceeceesceeteeeeeceeeeeeeeenseeenaeens 2 7 Pigure 2 6 PCI Car dC ain ies Races odaes iinn inneni sacar Lana ees 2 7 Figure 2 7 The RES 32XR3 Lithium Battery and Socket eee eccceesseeeteceeeeeeeeeeseees 2 8 Figure 2 8 Opening the RES 32XR3 Front Bezel Doors ce ceceseeseeteeeeeeeeeeeeeseeneeees 2 9 Figure 2 9 Unlocking the RES 32XR3 Storage Drives Front Doors Removed 2 10 Figure 2 10 RES 32XR3 Storage Drive Removal 00 cceecceeseesseceteeeeeeeceeesecnteeeeeeensees 2 11 Figure 2 11 The Dual RES 32XR3 120 mm Fans 2000 0 ecceesceceteeeseeeeeeeeseeceeeneeeeeaees 2 12 Figure 2 12 The RES 32XR3 Power Supply Locking Mechanism cccesceeeeeeee 2 13 Figure 2 13 Right Rack Mount Bracket ceeesesceseceececeeseeeeeeeeceaeceaecaeeeaeeeneeeeeeaees 2 15 Figure 2 14 AC Power Socket and LED on the RES 32XR3 Reat ecccceeseeeseeeteeeees 2 16 xv Themis Computer RES 32XR3 Installation Manual Configuration 1 xvi Figure 2 15 System Power Button and LED on the RES 32XR3 Front 00 0 eeeeeeeeeeeeee
119. selected drives and create default layout select this option to remove only Linux partitions partitions created from a previous Linux installation e This does not remove other partitions you may have on your storage drive s such as VFAT or FAT32 partitions e Use free space on selected drives and create default layout select this option to retain your current data and partitions assuming you have enough free space avail able on your storage drive s Using your mouse choose the storage dr ive s on which you want Red Hat Enter prise Linux to be installe d If you have two or more drives you can choose which drive s should contain this installation Unselected drives and any data on them are not touched Themis Computer C 7 RES 12XR3 Installation Manual Configuration 7 Version 1 3 To review and make any ne cessary changes to the part itions created by automatic partitioning select the Review option After selecting Review and clicking Next to move forward the partitions created for you in Disk Druid appear You can make modifications to these partitions if they do not meet your needs see Figure C 8 insulation requires partitioning of your hard drive By Gefauit a partitioning Layout Is chosen which is feasonatee for most users You can either choose h Remove at portit selected drives and create default layout Remove linux partitions on selected drives and create defaiat layout Use free s
120. sh with the second fan Th e 4 wire connector will automatically engage its counterpart connector successfully 2 12 Themis Computer 2 Installation and Operation Installation Procedures 2 1 7 Power Supply Each 650 watt load shari ng N 1 redundant power supply can be hot swapped while the system is still on and operational 2 1 7 1 Removing a Power Supply Perform the following steps to remove a power supply 1 Remove the two captive Phillips screws holding the power supply locking bracket to the chassis Store the bracket for later use see A in Figure 2 12 br Y Knurled captive Phillips screw Knurled captive Phillips screw ar h Power supply locking bracket m A Remove power supply locking bracket B_ then disengage locking lever and remove power supply System Power LED AC Outlet Phillips Screw Hole Push right to release power supply y for power supply locking bracket Power Suppl Locking Lover Phillips Screw Hole for knurled captive screw on power supply locking bracket Extraction Handle BERRRERRRRRRRRRRRRRRR RRR Figure 2 12 The RES 32XR3 Power Supply Locking Mechanism 2 13 Themis Computer RES 32XR3 Installation Manual Configuration 1 Version 1 3 2 Put the right index finger on the power supply extraction handle and the right thumb on the left side of the power supply locking lever 3 Squeeze the locking lever toward the pull handle and
121. snandechadvasians seta davdheus tag sanonenabaaansbargesducsieivaess E 3 List of Tables Table 1 RES x2XR3 20 Deep Chassis Manual Matrix 0 ccccccscceeseeeseeeteceteeeeeeeeaees XX Table 2 RES x2XR3S RES x1 XR3 17 Deep Chassis Manual Matrix 0 xxl Table 3 Front I O 16 Deep Chassis Manual Matrix cccceeccessceeseceeeeeeeeeeseeenseenes xxii Table 1 1 RES 32XR3 Motherboard Options Configuration 1 s sssssesseeseeeseesseseessee 1 2 Table 1 2 Major Features of the RES 32X RSs cs cssiscateustesasersasatentsaagndcantandevaareren actyiaeeicn 1 2 Table 1 3 System LEDS hanere A a at A Eet E AE EENT 1 7 Table 1 4 Power Supply LED Behavior ss ssssssessesessseessesersesssressessesseessessrssresseesesressee 1 8 Themis Computer xvii RES 32XR3 Installation Manual Configuration 1 xviii Table 1 5 VO COnNectOrS rinnen a oe a ea 1 9 Table 1 6 RES 32XR3 General Specifications c 2cassensel pce nesil aun 1 14 Table 1 7 RES 32XR3 Electrical Specifications i s42 ccasssessesasaedscesdahdnctoriaancweadesiendes 1 15 Table 1 8 Approximate Weights of the RES Sertes i sscscssccssssse seccdonccenadessacssdevncheaees 1 19 Table 2 1 RES 32XR3 Memory Capacity sasissassasesseiaathccstzanntsseacantesdadocsteacedentasaenaasiaias 2 3 Table 2 2 RES 32XR3 Optimal Memory Population Two CPUs Installed 2 3 Table 3 1 PIO Mode Select Options 5 25 aa ccecs ceeds toducase twas epwvataeravesceashcrtced iecse tate 3
122. ssword sesseesseseesesssessesressessesrrsresseesesersstesseserssressessess 3 29 34 2 User Password Sceni e aa a a Aa ee ed 3 29 3 4 3 Change Supervisor Password esessessesessseesseseesseesseserssressessessressessrssees 3 29 3 4 4 User Access Level Available when Supervisor Password is set as above esceesseeeteeees 3 30 Saco Chance User Password ac ataasickaicicdet te cubasat ss slismerpaad abana nate dataichis 3 30 3 4 6 Clear User Password Available only when User Password has been Set cececsseesseeeeeeees 3 30 SAT Password Checkin diacara a e e watacase secede taccen aa 3 30 3 4 8 Boot Sector Virus Protection ssesessessesessssesseseessressesreserssresseserssressesses 3 30 3 5 B ot Configuration siseerenisanian eona E E Sle n R a n 3 31 Soul Boot Device Priority orccain i a be E A T E r E 3 31 3 5 2 Storage DIVES is sos an a eee Meee eee ae a 3 31 S05 Removable Drives cies be aames siege Mais ae deen ca Say 3 32 33 4 CD DVD DIVES icc sated i i e a a losses her E peed iced ke 3 32 SAL Retry Boot DEVICES corinne nn nana a t 3 32 36 EXI OPTIONS oaninoar ei A E E E EE E E E 3 33 xii Themis Computer Table of Contents 3 01 Save Changes and EXit saurssozin ien e G r RRi 3 33 3 6 2 Discard Changes and Exit sssssseseesseseseseeseesresrosseesesresseesseserssressessessees 3 33 36 3 Discard Changes urssosr nene a aed E E eee loons 3 34 3 6 4 Load Optimal D fa lts s xipscs
123. sted in installing an optional switch from which to remotely turn the RES 32XR3 for X8DTH iF 6F on or off are able to order a Remote On Of f Switch module that is easily installed in an avai lable storage drive bay see Figure D 1 which shows the Remote On Off Switch installed in an RES 32XR3 FIO sys tem ul SS Figure D 1 Remote On Off Switch Module D 1 Themis Computer RES 32XR3 S for X8DTH iF 6F Installation Manual Version 1 3 The Remote On Off Switch module is installed after first removing one of the exist ing RES 32XR3 for X8DTH iF 6F storage dr ives any except the boot drive then installing a cable with as tandard male DB9 connector at one end and an On Of f switch an LED is optional at the other end When operational if the RES 32XR3 for X8DTH iF 6F is turned OFF pressing the remote switch ON will turn the system on If the RES 32XR3 for X8DTH iF 6F is turned ON pressing the switch OFF for less than 4 seconds will gracefully shut down the system through the BIOS pressing the switch OFF for 4 seconds or more results in a hard power off equivalent to pull ing the plug on the system D 2 Remote On Only Configuration When the Remote On Off Switch module is configured as an ON only device if the RES 32XR3 for X8DTH iF 6F is turned OFF pressing the remote switch ON will turn the system on Turning the RES system off however requires pressing the ON OFF button that is located direc
124. t to activate the following submenu screen for detailed options of these items Set the correct configurations accordingly The items included in the submenu are Type Select the type of device connected to the system The options are Not Installed Auto default CD DVD and ARMD Themis Computer 3 BIOS Setup Utility Advanced Setup Configurations LBA Large Mode LBA Logical Block Addressing is a method of addressing data on a storage drive In the LBA mode the maximum drive capacity is 137 GB For drive capacities over 137 GB your system must be equipped with a 48 bit LBA mode addressing If not contact your manufacturer or install an A TA 133 IDE controller card that supports 48 bit LBA mode The options are Disabled and Auto Block Multi Sector Transfer Block Mode boosts the IDE drive perfor mance by increasing the amount of data transferred Only 512 bytes of data can be transferred per interrupt if Block Mode is not used Block Mode allows transfers of up to 64 KB per interrupt Select Disabled to allow data to be transf erred from and to the device one sector at a time Select Auto to allow data transfer from and to the device occur multiple sectors at a time if the device supports it The options are Auto default and Disabled PIO Mode The IDE PIO Programmable I O Mode programs timing cycles between the IDE drive and the programmable ID E controller As the PIO mode increases the cycle time decreases
125. ta that determines the system parameters may be changed by entering the AMI BIOS Setup utility This Setup utility can be accessed by pressing lt Del gt at the appropriate time during system boot Starting the Setup Utility Normally the only visible Power On Self Test POST routine is the memory test As the memory is being tested press the lt Delete gt key to enter the main menu of the AMI BIOS Setup Utility From the ma in menu you can access the other setup screens An AMI BIOS identification string is displayed at the left bottom corner of the screen below the copyright message Caution Do not upgrade the BIOS unless your system has a BIOS related issue Flashing the wrong BIOS can cause irreparable damage to the system In no event shall Supermicro be liable for direct indirect special incidental or consequential damages arising from a BIOS update If you have to update the BIOS do not shut down or reset the system while the BIOS is updating This is to avoid possible boot failure 3 2 Themis Computer 3 BIOS Setup Utility 3 2 3 2 1 J Main Setup When you first enter the AMI BIOS Setup Utility you will enter the Main setup screen You can always return to the Main setup screen by selecting the Main tab on the top of the screen The Main BIOS Setup screen is shown below BIOS SETUP UTILITY System Time Figure 3 1 Main BIOS Setup Screen System Time System Date Use this optio
126. tem SATA AHCI will be available 3 13 Themis Computer RES 32XR3 Installation Manual Configuration 1 Version 1 3 3 3 4 3 3 3 4 4 3 3 4 5 3 3 4 6 3 3 4 7 ICH RAID Code Base This feature is available when the option RAID is selected Select Intel to enable Intel s SATA RAID firmware to configure Intel s SATA RAID settings Select Adap tec to enable Ad aptec s SATA RAID firmware to configure Adaptec s SATA RAID settings The options are Intel default and Adaptec ICH AHCI Code Base Available when AHCI is selected for Configure SATA 1 as Select Intel AHCI ROM to configure SATA 1 to support Intel AHCI ROM Select BIOS Native Module to configure SA TA 1 to support BIOS Native Module mode The options are Intel AHCI ROM default and BIOS Native Module SATA 2 Configuration This feature is available when the option IDE is selected for SATA 1 Selecting Enhanced will set SA TA 2 to native SATA mode The options are Dis abled and Enhanced default IDE Detect Timeout sec Use this feature to set the time out valu e for the BIOS to detect the A TA ATAPI devices installed in the system The options are 0 sec 5 10 15 20 25 30 and 35 default Primary IDE Master Slave Secondary IDE Master Slave Third IDE Master and Fourth IDE Master These settings allow the user tos et the parameters of Primary IDE Master Slave Secondary IDE Master Slave Third and F ourth IDE Master sl ots Hit lt Enter g
127. tery all in accordan ce with the instructions given in this manual e If extensions are made to the device the legal stipulations and the device spec ifications must be observed e The device must be switched of f when removing the top cover for example before installing extension PCI cards Operation of Laser Source Devices DVD CD ROM drives contain laser light emitting diodes classified in accordance with IEC 825 1 1993 LASER CLASS 1 and therefore must not be opened If the enclosure of such a drive is opene d invisible laser radiation is emitted Do not allow yourself to be exposed to this radiation The laser system meets the code of Federal Regulations 21 CFR 1040 for the USA and Canadian Radiation Emitting Devices Act REDR C 1370 Electrostatic Discharge ESD A sudden discharge of electrostatic electricity can destroy static sensitive devices or micro circuitry Proper packaging and grounding techniques are necessary pre cautions to prevent damage Always take the following precautions 1 Transport boards in static safe containers such as boxes or bags 2 Keep electrostatic sensitive parts in their containers un til they arrive at s tatic free stations 3 Always be properly grounded when touching a sensitive board component or assembly 4 Store electrostatic sensitive boards in protective packaging or on conductive foam Grounding Methods Guard against electrostatic damage at workstations by fo
128. tion 1 supports seve n PCI Express 2 0 x8 slots all in x16 slots All slots support cards up to 12 28 inches long see Figure 2 5 Slot 1 2 3 4 5 6 Slots 1 through 7 PCI Express 2 0 x8 all in x16 slots Figure 2 5 PCI Card Installation Configuration 1 2 1 3 1 Installing Cards Perform the following steps to install a PCI card 1 Loosen the captive knurled screw on the PCI card clamp see A Figure 2 6 Captive knurled screw PCI card clamp PCI card I O panels 7 total i 7 gt E z cepcccessesseses seeereeeeeaeeees and swing the PCI card clamp upward Figure 2 6 PCI Card Clamp Themis Computer 2 7 RES 32XR3 Installation Manual Configuration 1 Version 1 3 2 Swing the PCI card clamp away from the top of the chassis exposing the tops of the PCI card I O panels see B Figure 2 6 3 Locate the empty slot within which a card will be installed see Figure 2 5 4 Install the new card making sure the I O panel is al igned with the chassis opening 5 Repeat Step 3 and Step 4 until all additional cards have been installed 6 Swing the PCI card clamp b ack to its position over the PCI card I O panels and tighten the captive knurled screw on the PCI card clamp 7 Attach any internal I O ca bles to the installed PCI cards and carefully fold and tuck any exposed ribbon cables into the cabinet 8 If you have no further installations to perform close the RES 32XR3 chassi
129. tly on the front of the RES 32XR3 for X8DTH iF 6F chassis D 3 D 2 Ordering the Remote On Off Switch Because internal modifications must be made to the RES 32XR3 for X8DTH iF 6F in order to support the Remote On Off Switch module the module must be ordered and installed at the time your system is ordered Themis Computer Appendix Optional RES Audio USB Serial Port Module E 1 RES Audio USB Serial Port Custom Module Customers interested in adding audio USB and serial port capabilities to the front of any RES system can easily order an optional RES Audio USB Serial Port Custom Module see Figure E 1 that is installed at the Themis factory into an available stor age drive bay see following Caution Custom Module Ss Custom Module PCB 1 0 Connectors Figure E 1 RES Audio USB Serial Port Custom Module E 1 Themis Computer RES 32XR3 Installation Manual Configuration 1 Version 1 3 Module to the RES motherboard the RES Custom Module must be installed at the Themis factory before being shipped to the customer Do not attempt to remove the RES Custom Module from its drive slot unkss you have some hardware experience see the following paragraph Figure E 2 and Figure E 3 on page E 3 0 Caution Because connections must be made internally from the RES Custom The RES Audio USB Serial Port Custom Module is inst alled after first removing one of the existing RES storage drives any one
130. to begin flashing BIOS remotely Note Be sure to complete Steps a to c above quickly because you have a second or less to do so 7 Once you ve completed the instructions gwen a screen willdisplay to indicate that remote flashing is starting and the new BIOS file is being uploaded 8 To use Hyper Terminal to transfer the XModem protocol by using the Send File dialog under the Transfer menu follow the instructions below to com plete XModem transfers 3 37 Themis Computer RES 32XR3 Installation Manual Configuration 1 Version 1 3 a Select the Transfer menu and enter lt Send gt AMI_FLSH HyperTerminal File Edit View Call BAGI ees Receive File a Capture Text Send Text File Press lt Spa yke remote BIOS flash Beg in remo Capture to Printer y n y Starting remote flash Upload new BIOS file using Xmodem protocol SSSS3 Figure 3 6 AMI_FLSH HyperTerminal b Specify the location ofthe ROM file and select the proper protocol XMo dem c Press lt Send gt to start ROM File extraction See the picture below Folder C Documents and Settings Desktop Filename C Documents and Settings Desktop 3C02 ROM Browse Protocol v Send Close Cancel Figure 3 7 ROM File Extraction Themis Computer 3 BIOS Setup Utility BIOS Recovery d Once the ROM file extraction is completed the message New BIOS re ceived OK will dis
131. touderiarieareouyaiacsbanlans 3 9 3 3 2 11 Intel EIST Technology sciev ecu Sescectsielesesivedeecet thi deceredeseneans 3 9 3 3 2 12 Intel TurboMode Technology s jsccccescBycccadceceverncstletieucees 3 9 3 3 213 CLE SUpport isni iaa E a EE E E R 3 9 3 3 2 14 Intel C STATE Tech issiscessatccisesascnctiseswevraneniectas ciecaupteateatvonteues 3 9 3 3 2 15 C State package limit setting Available when Intel C State Tech is enabled 3 9 ix Themis Computer RES 32XR3 Installation Manual Configuration 1 Version 1 3 3 3 3 3 3 4 3 3 5 33 210 C Ate DEMO oi ssec e aE E A R a 3 32 ed CS A to Demot oi esei r e EE AA A EA 3 3218 ACPI State hronna a a a i eia Advanced Chipset Control sssssessesessseessesersseessessrssessessrsseesseeseeseessee 33 Sel ORE Links Speed more ea Teno ri er A E A A 3 3 3 2 QPI Frequency Available when QPI Links Speed is set to Full Speed 3333 OPPE OS and LEa a a n a O E RiT 3 3 3 4 gt Me moty PREQUCICY sonis ee nei ra SEAE a RE E Rii 3 3 3 5 Memory Mod enrio ts E E EE R 3 3 3 6 Demand Scrubbing 225 6 cacisissestecvecrecorecedece chase siessaceenas ods 3 3 5 F Patrol SCPUb DING neenotna iniia 3 3 3 8 Channel Tnterke avec isrnivetyiaccaetsnvcontnacteminak senrateaaae toes 3 3 3 9 Bank Wet Cavers cescsiccae oy ccateussernnteactenuseeeeadewsaunadhoaldorainans 3 3 3 10 Throttling Closed Loop sarss c testond ven dudienarcatestisatenvaastds Bro SMU MC
132. u want the boot loader to be installed You may install the boot loader in one of two places The master boot record MBR This is the recommended place to install a boot loader unless the MBR already starts another operating system loader such as System Commander e The MBR is a special area on your storage drive that is automatically loaded by your computer s BIOS and is the earliest point at which the boot loader can take control of the boot process If you install it in the MBR when your machine boots GRUB presents a boot prompt You can then boot Red Hat Enterprise Linux or any other operating system that you have configured the boot loader to boot see Fig ure C 11 on page C 11 Themis Computer C Red Hat Enterprise Linux 5 Installation Installation e The first sector of your boot partition This is recommended if you are already using another boot loader on your system In this case your other boot loader takes control first You can then configure that boot loader to start GRUB which then boots Red Hat Enterprise Linux install Boot Loader record on dev nda Master Boot Record MER Sev NGal Hest sector Of Doat partition Charge Drive Order force LBAIZ fnot normally required IF You ws to add detsut options to the boot Command enter them into Ihe General hermne parameters Holt General heme parameters D Netease Notes Dack gt ext Figure C 11 Master Boot Record MBR If your system
133. upport manuals Starting BIOS Setup Utility To enter the AMI BIOS Setup Utility screens press the lt Delete gt key while the sys tem is booting up Note In most cases the lt Delete gt key is used to invoke the AMI BIOSsetup screen There are a few cases when other keys are used such as lt F 1 gt lt F2 gt etc Each main BIOS menu option is described in this manual The Main BIOS setup menu screen has two main frames The left frame displays all the options that can be configured Grayed out options cannot be configured Options in blue can be config ured by the user The right frame displays the key legend Above the key legend is an area reserved for a text message When an option is selected in the left frame it is highlighted in white Often a text message will accompany it 3 1 Themis Computer RES 32XR3 Installation Manual Configuration 1 Version 1 3 J J 3 1 2 3 1 3 Note The AMI BIOS has default text messages built in Themis retains the op tion to include omit or change any of these text messages The AMI BIOS Setup Utility uses a key based navigation system called hot keys Most of the AMI BIOS setup utility hot keys can be used at any time during the setup navigation process These keys include lt F1 gt lt F10 gt lt Enter gt lt ESC gt arrow keys etc Note Options printed in Bold are default settings How To Change the Configuration Data The configuration da
134. ure reaches about 5 C above the threshold temperat ure as predefined by the CPU manufacturer to give the CPU and system fans additional time needed for CPU and system cooling In both the alarms above please take immediate action as shown below 3 3 8 2 CPU 1 Temperature CPU 2 Temperature System Temperature This feature displays current temperature readings for the CPUs and the System The following items will be displayed for your reference only CPU 1 Temperature CPU 2 Temperature The CPU Temperature feature will display the CPU temperature status as detected by the BIOS e Low This level is considered as the normal operating state The CPU tem perature is well below th e CPU Temperature Tolerance The motherboard fans and CPU will run normally as conf igured in the BIOS Fan Speed Con trol User intervention No action required Medium The processor is running warmer This is a precautionary level and generally means that there may be factors contributing to this condition but the CPU is still within its normal operating state and below the CPU Tem perature Tolerance The motherboard fans and CPU will run normally as con figured in the BIOS The fans may adju st to a faster speed depending on the Fan Speed Control settings User intervention No action is required However consider checking the fans and the chassis ventilation for blockage High The processor is running hot This is a
135. urn on the thermal fan control to prevent any overh eat damage to the CPU The on board chassis thermal circuitry can monitor the overall system temperature and alert users when the chassis temperature is too high Themis Computer RES 32XR3 Installation Manual Configuration 1 Version 1 3 A Caution To avoid possible system overheating please be sure to provide adequate airflow to your system System Resource Alert This feature is available when used with Supero Doctor III in the Windows OS envi ronment or used with the Supero Doctor I in Linux Supero Doctor is used to notify the user of certain system events For example you can also configure Supero Doc tor to provide you with warn ings when the system temp erature CPU temperatures voltages and fan speeds go beyond a pre defined range 1 6 1 6 1 ACPI Features ACPI stands for Advanced Configuration and Power Interface The ACPI specifica tion defines a flexible and ab stract hardware interface that provides a standard way to integrate power management features throughout a PC system including its hard ware operating system and a pplication software This en ables the system to auto matically turn on and of f peripherals such as CD ROMs network cards Storage drives and printers In addition to enabling operating system directed power management ACPI pro vides a generic system event mechanism for Plug and Play and an operating system independent i
136. urning the System Off 2 saz cts Je ecauntnaecceiotadtecaeaneganaade angele conte ee ueeanneceen 2 17 3 BIOS Setup Utility foe scsits icc chteoraesnivargsertaceduiy nea aoracen one de aa Maen ee 3 1 DA Tntrod cton 25462 Csr ese cae a sds wanes a Saces A esa STR 3 1 3 1 1 Starting BIOS Setup Utility sects ease ec lenses aha ea ei eieest 3 1 3 1 2 How To Change the Configuration Data 0 0 eieeceecceseceteceeceeeeneeeneeeeees 3 2 3 1 3 Starting the Setup Utility ic Sencusinevtages asueovi tes eset ences sengewelayiacuareetacaatoneses 3 2 3 2 Main Setups Ajsins dade pataedcse nat seis av dian Relves ta a aw ie Ae aes 3 3 3 2 1 System Time System Date ia stcin grees concealer aeuhacenasieniestes 3 3 viii Themis Computer Table of Contents S22 S permicro AOL renren arei ea a E ai i K E aT RE AEEKO 3 4 32 3 VPTOCCSSON Sei aE E ee et ha AEE AEE Seats E Eai 3 4 FDA SVS MEMO Lossen seos ieee En E RA E E E 3 4 3 3 Advanced Setup Configurations sssessesessssessessssressessessrssrossessesstesseesresresseesees 3 5 32 1 Boot Peatures norena a i een a a a ea a eias 3 5 Sa QUEE BOON meiha een E O A A a eat ee 3 5 BAD Oet BOON nean e e a aa a a adadabaes 3 5 3 3 1 3 AddOn ROM Display Mode ssssssssenesenneesesssesseesrsseesseessesessseesee 3 6 Dio Bootup Num Lo k goes ter iets a a ata tan eat 3 6 3 3 1 5 PS 2 Mouse Suppott sc csccevic is cetera tetas iii an 3 6 3 3 1 6 Wait For FL If ETOT ajccssesseccccdscccs sss ic i
137. utomated installation without hav ing to partition your drive s yourself If you do not feel comfortable with partition ing your system it is recommended that you do not choose to create a custom layout and instead let the installation program partition for you You can configure an iSCSI tar get for installation or disable a dmraid device from this screen by clicking on the Advanced storage configuration button see Figure C 7 on page C 7 Themis Computer C Red Hat Enterprise Linux 5 Installation Installation RED HAT ENTERPRISE LINUX 5 Installation requires partitioning of your hard drive By default a partitioning tayout Is chosen which is reasonable for most users You can eltner choose to use this oF create your own Remove linux partitions on sefected drives and create default layout Select the drive s to use for this installation Advanced storage configuration Reylew and modify partitioning layout _ Retease Notes Back W Next Figure C 7 Partitioning Click Next to continue Step 8 Create default layout allows you to have some control concerning what data is removed if any from your system Your options are e Remove all partitions on selected drives and create default layout select this option to remove all partitions on your storage drive s this includes partitions created by other operating systems such as Windows VFAT or NTFS partitions e Remove Linux partitions on
138. ve been installed verify that the BIOS setup is configured for the fastest speed of RAM used Themis Computer RES 32XR3 Installation Manual Configuration 1 Version 1 3 2 1 2 1 Installation The following procedure explains how to install the DDR3 FBD Memory Modules 1 Loosen and remove the seven screws securing the air flow deflector and PCI card retainer bracket in the following manner see Figure 2 2 e Screw A After removing Screw A remove the PCI card retainer bracket and store it in a safe place e Screw B The screw marked B in Figure 2 2 is recessed Remove it with a long shank magnetic Phillips screwdriver PCI Card Retainer Bracket Lithium Battery Figure 2 2 Remove the Air Flow Deflector Screws 2 4 Themis Computer 2 Installation and Operation Installation Procedures e Screw C Remove the five screws marked C in Figure 2 2 on page 2 4 which will loosen the air flow diverter so that it can be removed from the system After the air flow diverter has been removed the memory module slots will be exposed see Figure 2 3 CPU 2 Heatsink ben tiii TTT INHAN sae 2 a Branch 0 C i il iii P2 DIMM 1A GOC T O TPI pe je jii iA Tii P2 DIMM 2B Branch 1 lt Z P2 DIMM 2A i r P2 DIMM 3B Branch 2 lt pie P2 DIMM 3A P1 DIMM 1B j Branch 0 gs TTT riit Me T CPU 1 Heatsink P1 DIMM 1A m ALLIT TIT TIT thd a 5 P1 DIMM 2B ys Branch 1 lt Ny P1 D
139. x Installation Manual AT nn aa Winn Ji DT gt Wn TTT v ih THTT Best Tee HUTT ing He Hl RES 32XR3 Configuration 1 3RU 19 Rack Mount Rugged Enterprise Server with X8DTH iF X8DTH 6F Motherboard Configuration Two Quad Core 5500 or Quad Six Core 5600 Xeon CPUs RES 32XR3 Configuration 1 Two Quad Core 5500 or Quad Six Core 5600 Xeon CPUS RES 32XR3 Configuration 1 Two Quad Core 5500 or Quad Six Core 5600 Xeon CPUS RES 32XR3 Configuration 1 Two Quad Core 5500 or Quad Six Core 5600 Keon CPUS RES 32XR3 Configuration 1 Two Quad Core 5500 or Quad Six Core 5600 Xeon CPUS RES 32XR3 Configuration 1 Two Quad Core 5500 or Quad Six Core 5600 Xeon CPUS RES 32XR3 Configuration 1 Two Quad Core 5500 or Quad Six Core 5600 Keon CPUS RES 32XR3 Configuration 1 Two Quad Core 5500 or Quad Six Core 5600 Xeon CPUS RES 32XR3 Configuration 1 Two Quad Core 5500 or Quad Six Core 5600 Xeon CPUS THEMIS THEMIS THEMIS THEMIS THEMIS THEMIS THEMIS THEMIS ce VP VP ei VP ae wP ae RES 32XR3 Installation Manual Configuration 1 SuperMicro Motherboards X8DTH iF X8DTH 6F THEMIS ae Themis Computer Americas and Pacific Rim 47200 Bayside Parkway Fremont CA 94538 Phone 510 252 0870 Fax 510 490 5529 World Wide Web http www themis com Version 1 3 June 2011 Themis Computer Rest of World 5 Rue Irene Joliot Curie 38320 Eybens France Phone 33 476 14
140. y the Processor The options are Enabled and Disabled default Patrol Scrubbing A memory error correction scheme that works in th e background looking for and correcting resident errors The options are Enabled default and Disabled Channel Interleave This feature allows the user to configure the Memory Interleave setting for an onboard memory channel The options ar e 1 way 2 way 3 way 4 way and 6 way default Bank Interleave This feature allows the user to configure the Memory Interleave setting for an onboard memory bank The options are 1 way 2 way and 4 way default 3 3 3 10 Throttling Closed Loop Throttling improves reliability and reduces powerin the processor by automatic voltage control during proc essor idle states A vailable options are Disabled and Enabled default 3 11 Themis Computer RES 32XR3 Installation Manual Configuration 1 Version 1 3 NorthBridge Configuration 3 3 3 11 Intel OAT The Intel I OAT I O Acceleration Technology significantly reduces CPU overhead by leveraging CPU architectur al improvements freeing re sources for more other tasks The options are Disabled and Enabled default 3 3 3 12 DCA Technology Select Enabled to use Intel s DCA Direct Cache Access T echnology to improve data transfer efficiency The Options are Disabled and Enabled default 3 3 3 13 DCA Prefetch Delay A DCA Prefetch is used with TOE components to prefetch data in order to s
141. zel Doors Note For SAS drives the lower left hand removable storage drive SAS IDO is designated as the boot drive For SATA II drives the upper left hand removable storage drive SATA II IDO is designated as the boot drive 2 9 Themis Computer RES 32XR3 Installation Manual Configuration 1 Version 1 3 2 1 5 1 Opening the RES 32XR3 Front Doors The knurled captive screw on the front of the RES 32XR3 allows the doors to lock without a key To unlock the doors turn the screw countercl ockwise and pull both doors away from the chassis The accessory kit shipped with your RES 32XR3 contains two barrel lock keys This provides you the option of unlocking locking the Storage Drives see Figure 2 9 Waaa UUUOADNOSUOOUOOOUONOANUOONIIANDNapisennesnnnnns gt ann tere eee ere es eee ed T TTR TTT SE o gt ANOANANARANAOAANAAAAOOA DENOOOOONOVGG SOOUOOOOOOONAOOONS390 HOOOOSOOOOOOOOOOOOTOAT _Driveo Drive 1 K Drive 2 Drive3 E F AOOODAUODOOD DODAO RODADO DDOR ODDADDD DOODO OD DOADO OOOO O ODODO ADORNOA DODDO ANED Drive 4 amp Drive 5 Ko Drive 6 E Drive7 1G Drive Release Drive Lock Button one per drive Figure 2 9 Unlocking the RES 32XR3 Storage Drives Front Doors Removed 2 1 5 2 Storage Drive Removal After opening the front doors perform the following step s to remove and install a Storage Drive 1 Make sure the system is powered off see Operation on page 2 16 2 Lo

RES-32XR3 Installation Manual - Configuration 1

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