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1.  that the configuration be tweaked after installation  as some of  the default settings may not be optimal  For instance  for improved performance   use of the InnoDB engine is recommended  MyISAM was the default engine for  versions of MySQL prior to 5 5 5  There are other options that may be beneficial to  tweak  e g   innodb buffer pool size   Since MySQL tuning is beyond the scope of this  guide  we recommend consulting outside sources  A good place to start may be    InnoDB performance optimization basics     CodeDx Configuration    A series of configurations are required prior to installation  Please be aware that  failure to do so will most likely result in runtime failures  or at the very least   unexpected behavior  There are several different pieces of configuration that need  to be performed     Understanding the AppData Directory    Code Dx needs a place to store a variety of files  the analysis run inputs it receives  including the source code that it uses to display in the weakness details page  log  files  and configuration files  We group all of these under what we call the Code Dx  appdata directory     Since Code Dx can be deployed on a variety of different platforms and servlet  containers  we cannot make assumptions about where this appdata directory  should be  As such  you must configure this before hand     There are two options available to tell Code Dx where its application data should be  stored     1  Set a Java System Property named codedx appdata 
2.  the static analyzers will require more memory in order to analyze larger  projects        java tools maxmemory determines the maximum heap size for java based  tools  Default is 1024  1GB     o ruby tools maxmemory determines the maximum heap size for Ruby based  tools  which are run with Java via JRuby  Default is 1024  1GB        python tools maxmemory determines the maximum heap size for Python     Code Dx Install Guide 8 MCodeDx    A PRODUCT OF SECURE DECISIONS    based tools  which are run with Java via Jython  Default is 1024  1GB    o cat net maxmemory determines the maximum allowed memory usage for  CAT NET  Default is 2048  2GB      Changing any of the analysis behavior properties can be done at any time after the  initial installation  however  you will still need to restart the server in order to reload  the properties     Remember Me Config    As a user convenience  Code Dx can optionally remember users  logged in state on  trusted devices  Although support for this feature is turned on by default  this can be  changed to one of three levels via the swa user rememberme field in the properties file   The supported configuration values are     e full   Code Dx will remember any user who logs in  Once logged in  users will  not need to log in via the login form even after their session expires  They will  be remembered by a special cookie  until that cookie expires  The rememberMe  cookie does not contain the user   s password in any way  shape  or form    e usernam
3. Install Guide    FMCodeDx    A PRODUCT OF SECURE DECISIONS    1 7 2  Monday  April 27  2015    Table of Contents    Table of Contents  Requirements   NET Analysis  MySQL Database  CodeDx Configuration  Understanding the AppData Directory  Configuration Files  License File  Log Configuration File  Code Dx Properties File  Database Connection Config  Active Directory Configuration  Git Related Configuration  Analysis Behavior  Remember Me Config  JVM Configuration  Java 7 and earlier  Java 8  Installation  First Startup  Reinstallation    Code Dx Install Guide 2    OO WD ONN DAO MRB WW P                    NO OO  0    A PRODUCT OF SECURE DECISIONS    Install Guide    Requirements    1  The Java Runtime Environment version 7 or later installed on the server  machine    2  A Java servlet container  Code Dx has been tested with Jetty and Tomcat      An installation of MySQL to house the Code Dx data    4  A copy of Code Dx  This will generally be a zip file containing codedx war  this  guide  and a few other files    5  For  NET analysis  the  NET runtime is required  and it is strongly  recommended to install FxCop and CAT NET  See the  NET Analysis section  for additional information    6  Dependency Check periodically updates its database of vulnerabilities  If  Code Dx is installed in an environment without a connection to the internet   this update will not succeed      NET Analysis       oo    In order to run the bundled  NET tools supported by Code Dx  theNET runtime is  re
4. ation and deployment  options enabled on your server  Please refer to your servlet container user manual  for instructions on deploying war packages     First Startup    Once Code Dx is deployed  if configured properly  you should be able to navigate  to the deployment URL  e g   https   myservletcontainer codedx   and see the installation  screen     Code Dx Install Guide 10 MCodeDx    A PRODUCT OF SECURE DECISIONS    Install Code Dx  Before Code Dx can be run  it requires some setup  Your current configuration file is displayed below  Please verify that all of the settings are correct  then press the    Install  button     The contents of your configuration file are as follows       NOTE  Any changes made to this config file will only take effect when    Code Dx is restarted      MySQL Configuration    swa db url   jdbc mysql   lLocalhost codedx  swa db driver   com mysql jdbc Driver  swa db user   codedx   swa db password   codedx      Use  swa user rememberme  to control the level of  remember me  support     in the user login form           full    will cause users to be able to bypass the login form even after their     session has expired  via a special cookie  as long as they marked the  remember    me  checkbox on the login form           username only  will auto fill the username field in the login form after     the user has logged in for the first time  as long as they marked the    remember    me  checkbox on the login form           off    will not show a    rem
5. container and  using your browser  navigate to the  Code Dx deployment URL  From there  Code Dx will show you the installation page  and will proceed to install Code Dx again     Code Dx Install Guide 12 MCodeDx    A PRODUCT OF SECURE DECISIONS    
6. copy of Code Dx  For more information about the  logging configuration  consult the Logback manual     Code Dx Properties File    The most important configuration file is codedx props   the  props  file    which is  expected to be located in the appdata directory  The  props  file configuration  determines a variety of settings including the database connection information  the  analysis behavior  and Active Directory integration  among other things     The  props  file is formatted as a properties file  using key value pairs to set various    Code Dx Install Guide 6 MCodeDx    A PRODUCT OF SECURE DECISIONS    configuration fields  An example  props  file is provided in the sampleConfig directory  of a distribution copy of Code Dx     Database Connection Config    As mentioned earlier  Code Dx requires a MySQL database for storage  Once  MySQL is installed and configured as prescribed  you need to configure Code Dx  with the approproate connection information  The following properties are used to  configure Code Dx database connections     e swa db url   The JDBC URL of the database Code Dx will be communicating  with   e swa db driver   The name of the JDBC driver class to use for the connection   e swa db datasource   The name of the JDBC datasource class that will be used  for the connection   e swa db user   The username that will be used to access the database   e swa db password   The password that will be used to access the database    For instance  to configure Code D
7. e only   Code Dx will remember the username of any user who logs in   This is used to auto fill the username field of the login form  Users are  remembered by a cookie  until that cookie expires  This cookie simply  contains the user s name    e off   Code Dx will not remember anything about a user once that user s  session expires or if they log off     Note  for full and username only modes  users can opt out of being remembered by  Code Dx by unchecking the    remember me    checkbox in the login form     JVM Configuration    For CodeDx to run properly  the servlet container needs to be started with the  correct options  This is generally most easily done by modifying the value of the  SERVER_OPTS environment variable to include the correct arguments     Java 7 and earlier    We recommend increasing the amount of space allocated for PermGen to at least  256mb by including  Xx MaxPermSize 256m as an argument when you start your    Code Dx Install Guide 9 MCodeDx    A PRODUCT OF SECURE DECISIONS    server     Java 8    Java 8 doesn t allocate specific PermGen space  instead using any available  system memory for its  metaspace   which means that there s no need to enlarge  the PermGen space if you re running CodeDx with Java 8     Installation    Once configuration is ready  installation should be relatively straight forward   Deploying the codedx war file to your servlet container is the next step  This varies  from one application server to the next as well at the configur
8. ember me  checkbox  users must always complete the     login form to log back in once their session has expired          If unspecified  the default value is    full      swa user rememberme   full      the amount of time job results are cached for  in minutes     default is 60     swa jobs expiration   60      The maximum allowed size  in megabytes  of a single file in a multi part upload   default is 200     swa upload maxfilesize   200    3      The maximum allowed size  in megabytes  of a complete upload     default is 200     swa upload maxuploadsize   200      The number of analysis runs per project to keep    is unlimited    default is 5     swa storage num analysis runs to keep   5    3      Whether to keep raw tool outputs or bytecode     default is true        You will need to set the username and password for the admin user Please be  mindful of your selection for these settings since once set  there is no way to  recover this information if forgotten or lost  You will  however  be able to  change the admin user password when needed from within Code Dx     If these are correct  fill in a username and password for the system user and click  Install      System User Configuration  These credentials are for the primary Code Dx administrator account  Be sure to remember these for future use     Username    Password    Confirm Password    I I Warning  If you previously had Code Dx installed using the same database  all Code Dx tables in that database will be dropped  Th
9. is means that any data    stored in the database will be lost     After reviewing the configuration and entering the desired admin user credentials   press the  Install  button  You should see a message saying that the  installation  process has started   with a blue background  Once it s finished you should see  this     Code Dx Install Guide 11 MCodeDx    A PRODUCT OF SECURE DECISIONS    If these are correct  go ahead and click  Install     The installation has completed  Visit the home page to get started     Reinstallation    If you need to reinstall Code Dx you can perform the following steps  However   please be mindful that this is a destructive process that will result in data loss  Please only do so when the data managed by Code Dx is not intended to be  preserved     When Code Dx was first installed  it created a variety of files and folders in the  appdata folder  Here are the contents of an example config folder after installation     A       Name Date modified Type Size  d analysis files 10 8 2013 11 17 AM   File folder  J bundled tools 10 8 2013 9 11 AM File folder    di temp files 20 File folder   installation INSTALLATION File 1 KB   _  codedx props PROPS File 2 KB   _  license lic LIC File 2 KB  E  logback xml 10 4 2013 10 14AM XML File 2 KB                In short  to reinstall  simply make any changes you want to thecodedx props file   delete the  installation file and the following directories  analysis files  bundled tools   Finally  restart your servlet 
10. nforced as a security  measure to prevent system information exposure via the validation user interface   Although it is strongly recommended that this setting be left disabled  in the  exceptional cases where it is necessary to use local git repositories  set the  git config allow local urls property to true     Analysis Behavior    Various settings allow you to affect Code Dx s behavior regarding the analysis runs  it conducts     1  By default  Code Dx will store the last 5 copies of your analyses per project   To change that behavior you should change the value of the swa storage num   analysis runs to keep property in the properties file     2  For the analyses that are stored  Code Dx will  by default  maintain a copy of  the raw inputs it received for processing  While these inputs are not used by  Code Dx once it finishes the analysis process  they are kept around for  archival purposes  If storage space is an issue  the swa storage keep raw inputs  can be set to false to prevent Code Dx from storing the raw inputs     3  Code Dx bundles various static analyzers that run independently during the  analysis process  Each of these tools requires a memory budget during its  own analysis  The memory requirements vary based on the sizes of the  codebases the analyzers are checking  The memory budget for each of these  tools is configurable in the properties file  each of the following settings  specify the number of megabytes allotted to their respective tools  In general  
11. quired  It is recommended that the latest version of  NET be installed     Code Dx is capable of running multiple  NET analysis tools on your codebase   FxCop and CAT NET are two of the supported tools and are developed and  distributed by Microsoft  The end user license agreements for these products forbid  their redistribution  therefore  Secure Decisions is unable to legally bundle these  tools  So in order for Code Dx to run these tools on your behalf  you must install  them separately  Code Dx will then automatically discover their location and run  them     Depending on the version of FxCop you plan to use  it will either be bundled with  Visual Studio  as Code Analysis  or in the Windows SDK  For the best results    install Visual Studio 2012 or 2013 Premium  This will give you the latest rules  available  Code Dx will automatically discover the location of the latest version of  FxCop installed on your machine  If you would like to provide a specific location  set  the fxcop path property in the Code Dx configuration file  Code Dx supports versions  10  11  and 12 of FxCop  Since FxCop 10  Microsoft has stopped shipping a stand   alone version of FxCop and instead ships it as part of Visual Studio  Despite the   Code Dx Install Guide 3 MCodeDx    A PRODUCT OF SECURE DECISIONS    Visual Studio dependency  it is recommended to install the latest version of Visual  Studio to get the latest version of FxCop     Code Dx will work with either CAT NET 32 bit or CAT NET 64 bi
12. t  CAT NET 32 bit  has an installer and Code Dx will automatically look in the default installation  directory for this application  The 64 bit version is in a zip file  The best approach to  using the 64 bit version is to overwrite the 32 bit files with the 64 bit files   Alternatively  the path can be manually set using the cat net path property in the  Code Dx configuration file     MySQL Database    An installation of MySQL is required for storage of Code Dx data  During the  installation process  Code Dx will automatically create the tables it needs so it is  strongly recommended that you setup a new schema just for Code Dx to avoid any  contention with other applications using your MySQL installation  In addition  we  recommend creating a database user just for Code Dx with permissions only to the  Code Dx schema you create  Since Code Dx manages its own tables  the Code Dx  user you setup will need the following permissions     e For record storage and management   o SELECT  o INSERT  o UPDATE  o DELETE  e For table creation and management   o CREATE  o ALTER  o REFERENCES  o INDEX  o DROP    In MySQL Workbench  under Users and Privileges  gt  Schema Privileges  tab   you  should see this     Code Dx Install Guide 4 MCodeDx    A PRODUCT OF SECURE DECISIONS    Object Rights DDL Rights    v  SELECT V  CREATE  v  INSERT V  ALTER  V  UPDATE V  REFERENCES  V  DELETE v  INDEX  EXECUTE CREATE VIEW  SHOW VIEW CREATE ROUTINE  ALTER ROUTINE  v  DROP  TRIGGER    It is recommended
13. to the location of the  Code Dx Install Guide 5 MCodeDx    A PRODUCT OF SECURE DECISIONS    appdata folder  for the Java runtime that the server will run on  This is done  by passing the command line argument  Dcodedx appdata  path to config  to the  java call that starts the server     2  Set the CODEDX_APPDATA environment variable to the location of the appdata  folder     The location of the appdata directory may be an absolute or relative path  If you do  not provide one of these options  Code Dx will fail to start  If you provide both   priority will be given to the Java System Property     This folder should be kept intact during Code Dx upgrades  Therefore  it is  recommended that it be stored in a stable location  Normally  you won t need to  touch this folder after installing Code Dx  unless configuration tweaks are desired     Configuration Files    License File    A valid Code Dx license is required to run Code Dx  Code Dx looks for the license  file in the appdata directory when it starts up  The license file should have been  provided to you when you received the instructions to download the Code Dx files   Place the license file  ending in  lic  in the Code Dx appdata directory and it will take  effect the next time Code Dx starts up     Log Configuration File    Code Dx uses Logback for logging  To configure Logback  add a logback xm  file to  the appdata directory  An example Logback configuration will be provided in the  sampleConfig folder of a distribution 
14. x to communicate with a MySQL database  running on the same machine as the Code Dx server  with a username of   database username  and password of  database password  use the following  configuration     swa db url   jdbc mysqI   localhost codedx   swa db driver   com mysal jdbc  Driver   swa db user   database_username   swa db password   database_password   swa db datasource   com mysq  jdbc jdbc2 optional MysqiDataSource    Active Directory Configuration    Code Dx allows you to create and delete new users that are only known to the  Code Dx system  You may  however  want to let users use the same credentials as  they do for your organization  To facilitate this  you must set up an Actve Directory  configuration in the properties file using the shiro activedirectory realm   shiro activedirectory url  and shiro activedirectory searchbase properties shown in this  example     shiro activedirectory realm   org apache shiro realm activedirectory ActiveDirectoryRealm  shiro activedirectory url   Idap   172 17 17 8 389   shiro activedirectory searchbase   dc avi dc com    Code Dx Install Guide 7 MCodeDx    A PRODUCT OF SECURE DECISIONS    Git Related Configuration    Code Dx allows you to configure each project to automatically use source from a git  repository as input for each analysis  When configuring a connection to a git  repository  Code Dx will  by default  disallow the usage of    local    URLs  i e   URLs  that point to a file in Code Dx   s own file system   This is e
    
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