PS Data Analyzer - User Guide
Contents
1. 5 amp 17 7 14 39 QY_max Fm_Lss2 ez TI I 0 815 520 500 D I rr 480 0 82 0 805 440 460 ze GroupNo 1 GroupNo 2 Group No 3 Groups Name Visible Group method X axis Export Show group in graph ZN O Average t Rounds Group No 2 Hide group in graph Medan min max Dates attach original data Group No 3 O Mutes roup No O Hous Add to common graph 4 Fm_Lss2 Show original values O Days Espott data to CSV data to CSV Fig 10 Tab FC data 12 3 4 Tab RGB data Tab RGB data is divided into the three more sub tabs The sub tab RGB features is designed to compare different RGB features obtained from RGB analysis The sub tab Leaf color studies changes of color on plant leaves The sub tab Images shows original captured images from RGB cameras 3 4 1 Sub tab RGB features This tab shows data of RGB features obtained from the RGB analysis Controls on this tab are the same as in the ta2. PSI Photon Systems Instruments spol s r o Kol kova 39 621 00 Brno I O 60646594 DI CZ60646594 Photon Systems Instruments PlantScreen Data Analyzer v1 3 User manual Table of contents Table of contents eenegen fier nb d EES Eeer beer Ee set Ee ee tate H T AAtGOdACHoN ibn I n 3 2 Please let us pw geesde rees 3 3 Userinterface deschip oN iii na na vn 4 3 1 Tab Start EE 4 3 1 1 Manual group selection cccescccesssnceceeseececeeseeeeceeseaeeceeseaaeceseeeaeceeseaaececseaaeeseseaaeeesseaaeeeeseaaeeeeegas 5 3 1 2 Automatic group generation o eee 5 3 1 3 Groups storing and loading sii ss sisosss sosivao niou osla Z T a 6 3 2 er H 3 2 1 Sub tab Group comparison stu zasv u sia daria rr 7 3 2 2 Sub tab Plant Compani so WEE 9 3 2 3 S D ta oa I AT E AEE EE AEE A NE P A E AAE A AAT O E E E A EEEE 10 3 3 Tab EG Catal EE 12 CR Tab RGB EE 13 3 4 1 Sub tab RGB tO atures siyctscicc ar non ko ok rar o POT a aa oa 13 3 4 2 Substab Leaf COLO zisiintistnnnrdann na rn 13 3 4 3 Substab lun EE 14 3 5 Fab Weight data sieni la a EES aa b an nn 17 3 6 Tab Common EI RE 18 3 7 Tab TT le EE 19 DE let 20 4 1 e GE 20 4 2 Prt GE 24 5 Version Mi StOry EE 26 1 Introduction PlantScreen Data Analyzer is an application for visualization of PSI PlantScreen experiment data The version 1 3 can depict data from IR Fluorcam and RGB cameras and weighing The main purpose o
3. Lights 1 10 24 Documents Lights 1 10 2 1 weighing tun 3 a weighing wn weighing Notes Position tun 3 10 lights Col stari 30 dni nekter 10 lights Col stari 30 dni nekterd My Documents PLNT2 B1 10 lights day 19 31 07 PLNT 1 D Col stari 30 dni nekter R test 5min dark d PLNT2 D1 PLNT3 Ai R test 15min 150uE My Computer R test 15min 400uE PLNT 4 B2 10lights day 24 05 08 13 PLNT3 o File name example case FC day 31 12 08 13 10 lig PLNT4 D2 My Network Files of type GroupSet Files gset ance PLNT5 ai Test round Testing rounds PLNT 6 PLNT 5 PLNT 6 Jitka Prochazka 20130814 PLNT 7 PUNT 8 PLNT 7 PLNT 8 PLNT 9 Jirka Prochazka Fig 22 Loaded groups used with experiments stored in gset file currently selected experiments Fig 23 25 5 Version history Version Date New functionality 1 0 2 2013 Basic version 1 1 4 2013 Application renamed from CB Data Analyzer to PS Data Analyzer Fixed tray loading by missing RGB measuring Even empty trays can be seen Added new features for FC measuring NPO Iss Rfd Iss Standard deviation can be shown a
4. This tab contains some helpful information about features in PlantScreen Data Analyzer 19 4 Example case 4 1 Parti How to compare all plants from the tray with id 0876 and plants named L8 from tray with id 0877 Parameters to be plotted are Temperature from IR measurement and Perimeter from RGB measurement To accomplish the task above following steps need to be done Start the application PS Data Analyzer Goto tab Start Fig 17 o Load experiments from DB Fig 17 1 Select experiment Fig 17 2 Load trays Fig 17 3 Create new group and select it Fig 17 4 Select tray with id 0876 Fig 17 5 Add tray to group Fig 17 6 Create new group and select it Fig 17 4 Select tray with id 0877 Fig 17 5 Select plants named L8 Fig 17 7 Add plants to group Fig 17 8 Confirm choice Fig 17 9 O O O O O O 0 0 0 Stat IR data FC data RGB dala Weight data Common graph Features description Choose experiment FC RG Dd kazdeho svetla 10 kytek Mika 2013 07 25 0235 41 2130725 D 0 RO UserTerminate Mika 2030730085943 20130730 IO 0O Din UseiTerminate Mika 201307 30080524 20130730 I O Dn e Mika 2013 07 30 0307 41 20307 30 CI O O 1 1 Ok Mika 2030730081700 20130730 OO Di Ok Mika 2030730082233 2013070 OO oO ol ok Mika 20130730082755 2013070 O00 O
5. 2013 01 03 2013 01 03 02 01 2013 1355 50 03 01 2013 14 40 01 Nazev experimentu 10 01 Nazev experimentu 10 017 Nazev experimentu 10 017 Nazev experimentu 10 017 Jikuv testovaci experiment Jakuv testovaci experiment Jakuv testovaci experiment Jikuy testovac experiment 2013 01 03 2013 01 03 2013 01 10 2013 01 10 2013 01 10 2013 01 10 2013 01 03 2013 01 04 2013 01 10 2013 01 10 ics ics cscs olojoloja SDDDDDDISIER Els o BA 2130110 2013 01 10 Nazev experimentu 10 017 Nazev experimentu 10 017 10 01 2013 16 57 08 16 01 2013 10 11 25 Jikuy testovaci experiment Jakuv testovac experiment SILENA ZKOUSKA S DAZ 2013 01 10 2013 01 10 2013 01 10 2013 01 10 2013 01 10 2013 01 10 2013 01 16 aso agaon 0201 Vzorowy Tray 0222 Vzorowy Tray 2 0243 Vzorovy tray 3 Plant e5 Plant ri 0210 Plant 8 Plant 212 o2 0211 Plant 10 Oa m Load experiments from DB Bydate 2013 9 1 e a Fig 3 Confirmed plant group choice 3 1 3 Groups storing and loading Groups created in previous step can be saved or loaded to file This can be done by buttons Store groups and Load groups Fig 1 0 Only the group structure is stored in the file not the experiment data itself When groups
6. in the top right corner of the graph area Fig 5 j 3 2 2 Sub tab Plant comparison In this tab temperatures of individual plants from chosen groups can be compared By selecting one or more groups Fig 7 a and clicking the button Show plant list Fig 7 b all plants from the selected groups are added to plant list Fig 7 c Data for a plant are shown by checking plant s Visible checkbox The meaning of data values chosen in box Value type Fig 7 d is different from the values in tab Group comparison These values are for one plant and choice Average shows average temperature on the whole plant surface which is represented by pixel set The same applies for median and standard deviation Other control elements are the same as those in tab Group comparison and are described in the previous chapter F Puntcreen Data Analyzer m 7 ele e Start IR data FC data RGB data Weight data Common graph Features description Group comparison Plant comparison Images 303 302 301 3 lt 300 299 298 plant A13 obili plant A14 obili plant A15obili r plant A16 obili plant A17 obili plant A18 obili plant A19 obili plant A20 obili Groups Plants X axis ible PV Group No 1 O A13 Rounds bs EE Average d Dates Grupno 2 Gren pin i ue ace
7. son v A15 jecmen Hours Days A 16 jecmen a b Fig 7 Sub tab Plant comparison in tab IR data 3 2 3 Sub tab Images This tab allows loading and browsing the images captured by IR camera Displayed images can be stored on the local disc in common image format There are some tools for loading and viewing images on the left part of tab Images while the rest of the tab is reserved as display area All trays from chosen experiments are listed in list box Choose tray Fig 8 a Tray has to be selected before displaying any images The buttons for loading images from the database are placed below the list box Fig 8 b Images for selected tray can be loaded either for all rounds or for currently selected round only Fig 8 e The progress bar Fig 8 c is visible only while loading the images This operation can take even few minutes depends on round count but this process runs on the background so other parts of the application are still accessible After all selected images are loaded it can be shown as original image or with mask overlay mask comes from IR analysis Fig 8 d Both display styles are shown in Fig 9 Round number can be changed by the buttons lt lt and gt gt or by typing the number of round in the text box between these buttons Fig 8 e and confirming by Enter key All loaded images can be exported by the Save loaded images bu
8. 0 230110 203010 SE Ba 10 01 70 1301 10 a Se Tow amar Load experiments from DB O b a Fig 1 Tab Start The next step is selection of plant groups It can be done either manually by moving trays plants to groups or automatically based on the parameters inserted during experiment run Group size may vary from single plant to hundreds of plants 3 1 1 Manual group selection Groups are created or deleted by using buttons New group Remove group and Remove all groups Fig 1 g Selected plants are added or removed from existing group by clicking buttons gt gt and lt lt Fig 1 h Multi selection is possible by holding the left mouse button and dragging the cursor over the displayed plants or by clicking individual plants while holding Ctrl key Plants in selected group are shown in the plants table Fig 1 m Whole trays can be added to selected group by clicking Add tray button Fig 1 i Every group can be renamed by clicking the right mouse button on group in groups table Fig 1 k and choosing Rename group from context menu 3 1 2 Automatic group generation Automatic group generation is done by clicking Create groups by custom parameter button Fig 1 j New dialog window pops up with the list of all parameters available for automatic group generation Fig 2 Please note that parameters listed here are restricted to those inserted
9. 17 8 16 24 17 6 16 26 17 6 16 28 17 8 16 30 17 6 16 32 17 6 16 34 17 6 16 36 17 6 16 38 17 6 16 40 17 6 16 19 17 6 16 21 17 6 16 23 17 6 16 25 17 6 16 27 17 6 16 29 17 8 16 31 17 6 16 33 17 6 16 35 17 6 16 37 17 6 16 39 Group No 3 Group No 1 Zoom ut Groups Group No 1 a Group Na 2 a pro Export C attach original data Export data to CSV Fig 15 Tab Weight data 17 3 6 Tab Common graph This tab is used to compare different measured analyzed features from previous tabs between each other A new graph area has to be created at the beginning The areas are managed by the buttons New area and Remove area Fig 16 a Existing areas are listed in the areas table Fig 16 b and can be shown hidden in the graph by the buttons Show area and Hide area Fig 16 c The next step is to add data to the areas Available graph items previously exported from tabs IR FC RGB and Weight data are listed in the items table Fig 16 d Each row in the table represents one item showing the group name measurement type and parameter and the area name which it is added to with the corresponding color in the graph The items are added to an area by selecting area Fig 16 b item Fig 16 d and axis Fig 16 f and confirming by clicking Add item to area button Fig 16 e Each item can be only in one area and plotted towards one axis If a
10. Oh Ok 3 Mika 2013 07 30 09 31 24 oam O O O U 1 Ok 3 Mika 20130730093523 2030730 DD DEn ok zah Stour into 3 Mika 201307 30093834 20130730 DD O Di Ok ser defined group ol stari 30 dni nektere rostl Mika 20307 0 023443 2030731 M M O UserTerrinate paramet ol stari 30 dni nektere rostl Mika 20130731 11 3056 ma AA 012 UserTeminate ol stari 30 dni nektere rostl sharmila 2013 07 31 16 50 46 20130731 D I oO Klara 2030001 032330 20130501 BO E O Klara 2013080084548 oan BO EO Klara 20130801 112407 300 AO EA O ESCH 20130805 102223 2030806 DS 8 O 2030812151824 2030812 JE O 0 IE p a GI gt ra Jika Prochazka 201308 14 125833 RR E ka Prochazka 2013081415227 ama Eoo O nn O O Bydse 2013 s 7 AA 1 2 Go to the tab IR data Fig 18 o Check up if both groups are visible Fig 18 1 o Add current graph items to common graph Fig 18 2 E PlantScreen Data Analyzer o jej Stat R daia FC dala AGB data Weight data Common graph Features description Group companson Plant comparison Images o ep 294 8 294 6 2 2 294 4 294 2 294 1 2 3 4 5 My group A My group B Group method X amis Export Average ad dee Rounds Median min max O Dates CT attach original data Minutes Hous O Show original values Days Fig 18 21 Go to tab RGB data sub tab RGB features Fig 19 o Chec
11. Test round 0946 LB PLNT 8 Testing rounds Se See e nra My Network Sayeastype GroupSet Files a v TEHO PLNT A4 z Testing rounds Jika Prfehazka 2013 0844 20130814 fA M M O5 E E Testing rounds Jirka Pibchazka 2013 08 14 2013 08 14 f M 4 M 2 SSS A PEN Testing rounds Jitka H ochazka 201308 14 2013 08 14 RBD ee 0940 LS PLNT 3 0897 17 PLNT9 AB All Brala ET Load experiments from DB Load trays from DB Bydate 2013 2 8 E Fig 21 03 24 Stay in the tab Start Fig 22 o O o Remove all the created groups Fig 22 1 Select all wanted experiments Fig 22 2 Click the button Load groups Fig 22 3 Find and select the file with the stored group set Fig 22 4 Click the button Open Fig 22 5 Select the option currently selected experiments in opened dialog window Fig 23 Confirm by clicking the button OK in dialog window Fig 23 Confirm the group choice by clicking the button Confirm choice Fig 17 9 Work with data on the other tabs Rounds from selected experiments are ordered by their start date PlantScreen Data Analyzer sE Stat IR data FC data RGB data Weight data Common graph Features description Choose experiment Name Lights 1 10 24 Lights 1 10 24 Lights 1 10 2 My Recent
12. Zoom out from context menu or by clicking Zoom out button Fig 5 g The range of Y axis is set by default according to the minimal and maximal values in the graph but can be overridden by user by clicking the right mouse button on the graph and choice Y axis settings in the context menu The minimal and maximal value on Y axis can be set in the opened dialog window Fig 6 Y axis settings BAX Axis Range Auto User defined Minimum 1200 00 lt gt dh Maximum 1600 00 H Fig 6 Y axis range settings The data from the graph area can be added to Common graph by clicking Add to common graph button Fig 5 b Note that only currently displayed groups are added and that both options for X axis units will be available in Common graph regardless of current selection The content of all groups can be also exported to CSV file Fig 5 i for further analysis with common spreadsheet editors e g Microsoft Excel or with advanced statistic tools The data from every group are exported regardless of the current graph selection In the exported file stored data are grouped by all available group methods average standard deviation If necessary all original data for every plant in groups can be stored This is done by checking the checkbox attach original data Screenshots of the graph area can be stored by clicking a small button with the symbol of camera located
13. are loaded from the file and some experiments are already selected dialog with source experiments pops up Fig 4 Either original experiments from group file or currently selected experiments can be chosen as data source Loaded groups used with experiments stored in gset file curently selected experiments Fig 4 Experiments choice by loading group set 3 2 Tab IR data This tab is divided into three additional sub tabs Sub tab Group comparison is designed to compare data between plant groups while sub tab Plant comparison shows data for individual plants from plant groups Sub tab Images shows original captured images from IR camera Values of temperature measured by IR camera can be shown in one of these three units of measurement degrees of Celsius degrees of Fahrenheit or Kelvins This can be set in configuration file named app conf and stored in the same folder as the application Default selection is degrees of Celsius 3 2 1 Sub tab Group comparison The main part of this tab is graph region situated in the middle of the window Temperatures are shown for chosen plant groups All created groups are shown in the groups table Fig 5 a and their colors in the table correspond with the colors in the graph Groups can be shown hidden in the graph by clicking Visible checkbox next to its name in the group table or by selecting them in the table and clicking Show group in graph
14. by user during protocol run Number in parenthesis next to the parameter name shows how many groups can be distinguished based on this parameter There is also a possibility to create an extra group of plants without any value inserted for given parameter This is achieved by checking the option Create also group without chosen parameter Groups are generated by clicking OK button Detailed information about values of plant parameters used for automatic group generation is shown in information box Fig 1 when the group is selected Automatically generated groups can be further manually edited Generate groups by custom parameters BAX Choose custom parameter Zalito roztokem X 3 groups CH Create also group without chosen parameter Fig 2 Creating groups by plant parameter When the group selection is done click Confirm choice button Fig 1 n After this the button turns green Fig 3 a which means that data for created groups are prepared in other tabs In the same time each group was assigned a color Fig 3 b which is used in all graphs Start IR data FC data RGB data Weight data Common graph Features description Choose experiment Start date Stop date RGB Wt Rounds Id Notes 03 01 2013 11 50 22 02 01 2013 16 05 38 03 01 2013 11 51 10 2013 01 03 2013 01 02 2013 01 03 2013 01 03 2013 01 02 2013 01 03 0 03 01 2013 13 19 43
15. or Hide group in graph buttons Fig 5 h Start IR data FC data RGB data Weight data Common graph Features description Group comparison Plant comparison Images 301 300 5 Kelvin Group No 1 Group No 2 yee be Z a Group No CO attach original data A Se ji Fig 5 Sub tab Group comparison in tab IR data If there is more than one plant in the group displayed value is computed from single plant values using one of the group operations The kind of operation used in the graph is selected in box Group method Fig 5 c When option average is chosen standard deviation can be shown as semi transparent area around the average line The same applies for median and minimal and maximal values Even original values for each plant can be shown in the graph like individual points Fig 5 e by checking the checkbox labeled Show original values Fig 5 d X axis can represent either round numbers or dates with labels for minutes or hours or days This can be set in frame X axis Fig 5 f Value of each data point in the graph can be shown by clicking the left mouse button on it Each graph area can be zoomed in by selecting the part of graph while holding left mouse button The graph area is zoomed out by clicking the right mouse button over the graph area and choosing
16. b FC data and are described in chapters 3 2 1 and 3 3 PlantScreen Data Analyzer Bax 7 Stat IR data FC data RGB data Weight data Common graph Features description RGB features Leaf color Images Compactness 0 52 0 5 0 48 0 46 0 44 0 42 0 4 0 38 0 36 1 2 3 4 5 GroupNo 1 GroupNo 2 Group No 3 Groups Nana Visible Features Group method X aris Export U w group in grap a L Group No 1 Roundness a Average adi non Group No 2 Hide group in graph v Compactness O Median min max Dates attach original data a Eccentricity d Minutes JE AMS Ho Export data to CSV Add to common graph LI sot el Show original values Days Fig 11 Sub tab RGB features in tab RGB data 3 4 2 Sub tab Leaf color The tab Leaf color shows changes in color of plant leaves There are some predefined colors and graphs show percentage of each color on the plant Every graph area in the line graph Fig 12 c represents one of the predefined colors and contains data for all visible groups Every graph area in pie graph Fig 12 d represents one visible group and contains data for all the predefined colors and one round of experiment The visualized round can be changed by the buttons lt lt and gt gt Fig 12 e 13 Which groups are shown in the gra
17. be loaded either for all rounds or for currently selected round only Fig 8 f The progress bar Fig 8 d is visible only while loading the images This operation can take even few minutes depends on round count but this process runs on the background so other parts of the application are still accessible After all selected images are loaded it can be shown as original image image corrected by Fish eye correction first analysis step or with mask overlay second analysis step Fig 13 e Fig 14 The masks used with RGB images are inverted for visualization 14 Round number can be changed by the buttons lt lt and gt gt or by typing the number of round in the text box between these buttons Fig 13 f and confirming by Enter key All loaded images can be exported by the Save loaded images button Fig 13 g en Start IR data FC data RGB data Weight data Common gragff Features description d all rounds selected round Loading images from DB Save loaded images Fig 13 Sub tab Images in tab RGB data 15 Corrected image Fish eye corr 1 Image with mask Fig 14 Three ways of showing RGB images 3 5 Tab Weight data Tab Weight data contains information about changes in plants weight Control elements of this tab Fig 15 are the same as in the tab Group comparison in chapter 3 2 1 17 6 16 18 17 8 16 20 17 8 16 22
18. f the application is to compare parameters of groups of plants in time The application uses data from experiments stored in PlantScreen database The numerical parameters are shown in graphs the data from RGB and IR cameras are displayed as original images There are individual tabs for each data type IR Fluorcam RGB and weight data plus one extra tab for visualization of data from multiple sensors together Each tab contains tools for graph manipulation and export to a CSV file format 2 Please let us know Please contribute to the application development by sending us a report if you experience unstable behavior In case of application crash erratic behavior please send an email with the error description and sequence of your steps leading to it to support psi cz Also attach log file named log file txt stored in C Documents and Settings lt UserName gt Application Data PSI PlantScreen data analyzer 1 3 0 0 Log 3 User interface description The application interface is divided to several parts and every part is placed in its own tab Tabs are switched by clicking on the tab header in top left corner of the application window 3 1 Tab Start The first step necessary to display any data is to select experiments stored in database and the plants used in them This is done in tab Start After clicking button Load experiment from DB Fig 1 a all stored experiments are shown in experiment table Fig 1 c alo
19. have to have the same configuration to be used together Reloading of experiments must be confirmed Different experiments can be assigned to groups while loading stored groups Date and time in names of exported images By exporting original data for every plant is stored even tray id and position on tray Screenshots of common graph In graphs can be showed points for each original plant value New tab Leaf color in tab RGB Measurement units for temperature in IR tab can be changed in configuration file RGB images can be shown after fish eye correction and with mask used in analyze IR images can be shown with mask used in analyze PSI Photon Systems Instruments spol s r o 26
20. hem with more experiments which contain the same trays To accomplish the task above following steps need to be done Create groups chapter 4 1 Goto the tab Start Fig 21 o Click the button Store groups Fig 21 1 o Open the target folder Fig 21 2 o Write name of the new file Fig 21 3 o Click the button Save Fig 21 4 W PlantScreen Data Analyzer Je Start IR data FC data RGB data Weight data Common graph Features description Choose experiment Choose tray Name Notes Responsible Sat de Stopdate IR EC RGB Wt Round Id Notes New Lights 1 10 2 meas in24 Mika 2013 07 30 2013 0730 O O Di 0876 na gom Lights 1 10 2 meas in24 R emov Lights 1 10 2 meas in24 group Save i E v A Lights 1 10 2 meas in24 LL Evers cose are emove Lights 1 10 2 meas in24 all groups waiting My Recent weighing run 3 Documents weighing run3 10 lights Col stari 30 dni 5 10 lights Col stari 30 dni Desktop eat 10 lights day 19 31 07 Col stari 30 dri e e R test_Smin dark m R test 15min 150E My Documents e R test_15min 400uE EE Add tray 10ights day 24 05 08 13 S FC day 31 12 08 13 10 lig My Computer EE
21. k up if both groups are visible Fig 19 1 o Show graph with feature Perimeter fig 17 2 o Add current graph items to common graph Fig 19 3 Stat IR data FC deis RGB data Weight data Common graph Features description RGB features Leaf color Images Perimeter 700 650 600 550 500 450 1 2 3 4 5 My group A My group B Group method X axis Export Average I adden Rounds Median min max O Dates C attach original data l Minutes S Hons Export data to CSV m EI Show original values Days P Fig 19 22 Go to the tab Common graph Fig 20 Create new area Fig 20 1 Select items representing parameter Temperature Fig 20 2 Chose primary Y axis Fig 20 3 Add items to selected area Fig 20 4 Select items representing parameter Perimeter Fig 20 2 Chose secondary Y axis Fig 20 3 Add items to selected area Fig 20 4 Change Y values type if necessary Fig 20 5 Oo O O O O 0 0 JF PlantScreen Data Analyzer eS m Start IR data FC data RGB data Weight data Common graph Features description area2 6 295 700 294 8 650 294 6 600 294 4 550 294 2 500 294 450 1 2 3 H 5 My group B IR TEMP My group A IR TEMP My group B RGB PERIMETER My group A RGB PERIMETER e use primary axis A use secondary axis 23 4 2 PartlII How to store the created groups and reuse t
22. n item is repeatedly added to the graph it is kept only in the last area it was added to When selected the item can be removed from the area by clicking Remove item from area Fig 16 g Group No 1 AEB AREA Group No 1 RGB ROUNDNESS Group No 1 RGBIECCENTRICITY Group No 2 RGEXAREA ERFTTT Graph areas Feature RGBIAREA RGBIROUNDNESS RGBIECCENTRICITY Fig 16 Tab Common graph 18 There are two options for graph Y axis units Fig 16 i It can be either absolute units corresponding to plotted item or interval lt 0 1 gt If Absolute option is selected the item can be assigned either to primary Fig 16 j or secondary Fig 16 k Y axis This option is useful when comparing two features with different units range between each other When Normalized option is selected each feature value is converted to lt 0 1 gt interval before plotting This is helpful when tracking trends among more features Changing of group method Fig 16 h works for all features except for leaf color features from RGB measurement These features represent percentage value and stays the same regardless the settings They also do not have standard deviation and min max values Other control elements are the same as those in the tab Group comparison in chapter 3 2 1 3 7 Tab Features description
23. ng with their detailed descriptions Experiments can be filtered based on year and month of experiment start Fig 1 b In the experiment table one or more experiments can be selected Experiments selection is confirmed by Load trays from DB button Fig 1 d which loads all trays contained in selected experiments if any into tray table Fig 1 e In case of selection of more experiments only trays appearing in all experiments are loaded Plants from currently selected tray are shown in plant table Fig 1 f mayne Stat IR data FC data RGB dala Weight data Common graph Features descnptio Responsible Start date Stop date 2013 01 02 2013 01 02 2013 01 03 2013 01 03 4701 2013 13 19 49 2013 01 03 2013 01 03 03 01 2013 13 55 50 2013 01 03 2013 01 03 ca M E o 03 01 2013 14 40 01 20130103 201301 04 O O O o o M Nazev experimentu 10 017 Jikuv testovaci experiment 20130110 Nazev experimentu 10 017 Jitkuy testovac experiment 20130110 Nazev experimentu 10 017 Aan testovac experiment 2013 01 10 20130110 Nazev experimentu 10 01 Jikuv testovac experiment 20130110 2030 10 ose eooocosaae ponooonnuAn s 201301 10 20301 10 10 017 L t testovaci experiment 20130110 2030110 olo l dikuv testovac experiment Jam30140 2030110 OO 0
24. phs is selected in the table of groups Fig 12 a Selection determines which lines in the line graph Fig 12 c are visible and which graph areas in pie graph Fig 12 d are visible In the table with leaf colors Fig 12 b there can be selected which graph areas in the line graph Fig 12 c are visible Other control elements are the same as those in the tab Group comparison in chapter 3 2 1 PlantScreen Data Analyzer Stat IR data FC data RGB data Weight data Common graph Features description RGB features Leaf color Images Light green Sick green Group No 2 Group No 3 Export 1 Group No 2 X ams Rounds O Dates O attach original data Export data to CSV Fig 12 Sub tab Leaf color in tab RGB data 3 4 3 Sub tab Images The tab Images allows loading and browsing images captured by RGB cameras Displayed images can be stored on the local disc There are some tools for loading and viewing images on the left part of tab Images while the rest of the tab is reserved as display area All trays from chosen experiments are listed in list box Choose tray Fig 8 a Tray and Camera number have to be selected before displaying any images The buttons for loading images from the database are placed below the list boxes Fig 8 c Images for selected tray can
25. s semitransparent area around the line of average values Cursor cross is not visible during zooming on graphs User can set X axis interval for date type axis Fix of multiple graph drawing after graph parameters settings changes Listing of experiments by date year month 1 1 1 5 2013 Fixed plants loading Changed features for RGB measuring Plants position on tray is shown in plant list 1 1 2 5 2013 Changed appearence of feature list on tab RGB and FC 1 1 3 6 2013 Working with more experiments with the same trays Storing of user group set to a file with extension gset Loading of user group set from a file with extension gset 1 2 6 2013 Added IR tag for showing results of IR measuring 1 2 1 7 2013 Images of all trays from chosen experiments can be loaded In tags RGB and IR New DB configuration file 1 2 2 7 2013 Y axes range can be set by user in every chart Min max value can be showed with median in charts Chart export as image for every chart 1 2 3 7 2013 Changed format of file name for all stored images RGB IR mask Loaded RGB IR and mask images can be stored to user selected location New tab with measuring features description 1 3 8 2013 New button on main tab for removing all groups in one click Groups can be renamed by right click and choose option to rename Chosen experiments do not
26. tton Fig 8 f PlantScreen Data Anglyzer Loading images fg 2 oading images from DB r Viewer control Original image O Image with mask Fig 8 Sub tab Images in tab IR data 10 Original image Image with mask Fig 9 Original IR image and IR image with mask 11 3 3 Tab FC data The main part of this tab is the graph region situated in the center of the window There are shown all available data from FluorCam measurement for plants in created groups All available features obtained from FluorCam measurement are visible in the features list Fig 10 a This list only contains non empty features features programmed in FluorCam protocol before the experiment starts on PlantScreen Each feature has its own graph area and can be shown or hidden by clicking on particular checkbox in the features list Only visible features will be added to the common graph when the Add to common graph button is used Other control elements are the same as those in the sub tab Group comparison of tab IR data and are described in chapter 3 2 1 je PlantScreen Data Analyzer 4e SS et IR data FC data AGB data Weight data Common graph Features description Ke Fo Fm_Lss1 135 640 130 o TH CT 125 600 580 560 540 520 500
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