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RES-12XR3 Installation Manual - Configuration 7

1. m D 1 E 1 RES Audio USB Serial Port Custom Module steeeneeneneneneeenneeea D 1 ELL Aten TO Cap less aniisi aitia D 3 BU Gonnector PIOUS sienen nna a e EA e ae a ik NE ENSS D 4 EL SWSB Ports Aand Bori saanu taala D 4 E1 22 Seral Pott COML saatsime aadel D 5 E 1 2 3 Stereo Audio Ports Optional wreanennseorennne D 6 E 2 Ordering the RES Audio USB Serial Port Custom Module D 7 Appendix F Repackaging Instructions remeemseenreeenseeeneenenneee E 1 F 1 Repackaging for SHIpMecit 2 lt 4 2c1 2esssesuseneelasanadans tates da edhosn ten saeeaieataannslataesdacsiatoaaes E 1 F 2 Packaging Conipomentsuoraksumsaeaatu saua saauumuskauaust E 2 F 3 Instructions for Repackaging sss teil wise Aires aada Aaa ans E 3 Index 00 asuala ala aata talad Index 1 Reader Comment Card xiii Themis Computer RES 12XR3 Installation Manual Configuration 7 Version 1 2 xiv Themis Computer Table of Contents Figure 1 Figure 2 Figure 3 Figure 4 Figure 5 Figure 1 1 Figure 1 2 Figure 1 3 Figure 1 4 Figure 1 5 Figure 2 1 Figure 2 2 Figure 2 3 Figure 2 4 Figure 2 5 Figure 2 6 Figure 2 7 Figure 2 8 Figure 2 9 Figure 2 10 Figure 2 11 Figure 2 12 Figure 2 13 Figure 2 14 Figure 2 15 Figure 2 16 List of Figures Rugged Enterprise Server Model RES 12XR3 tmeen
2. A 5 VGA Display Port The RES 12XR3 supports a single 15 pin three 5 pin rows female VGA graphics display port connector on the rear I O panel see Figure A 4 for a connector pinout Pinout signal descriptions are listed in Table A 5 Symbol VGA Display Port D 15 11 Figure A 4 VGA Connector Pinout Table A 5 VGA Connector Pinout Signal Descriptions Pin Signal Description 1 RED Red video 2 GREEN Green video 3 BLUE Blue video 4 MS2 Monitor ID bit 2 5 GROUND Ground HSync 6 GROUND Red return 7 GROUND Green return 8 GROUND Blue return 9 NC Key no pin 10 GROUND Ground VSync 11 MSO Monitor ID bit 0 12 MS1 SDA DDC Data Monitor ID bit 1 13 HSYNC Horizontal sync 14 VSYNC Vertical sync 15 MS3 SCL DDC CLk Monitor ID bit 3 A 4 Themis Computer Appendix Rack Mount Slide Installation An optional set of two rack mount slides left side and right side is available for all RES 12 systems and should be ordered at the time of purchase The RES 12XR3 chassis contains nine threaded screw holes on each side to accommodate M4x6mm size screws included with the rack mount slide kit steel slides reguire four mount ing holes and aluminum slides require three mounting holes see Figure B 1 2024 Mounting 424 9 24 9 Bracket Note All dimensions are given in millimeters mm and measured from the baseline 0 of the
3. Overview and Specifications 1 9 Packaging and Shipping The RES 12XR3 is packaged in a reusable shipping container Approximate weight of an empty container and two AC power cords is 8 8 pounds 4 kg The approximate weight of a RES 12XR3 loaded with two storage drives two PCI cards a CD RW DVD ROM drive two CPUs 6 DIMMs and two power supplies is approximately 19 5 pounds 8 9 kg The approximate weight of a manual and ass ociated shipping paperwork is one pound 0 5 kg Therefore both the shippi ng container and a fully in stalled RES 12XR3 including power cords manual and associated paperwork weigh under 30 pounds 13 5 kg Caution Do not discard the original packaging that your systemwas shipped in When sending the RES 12XR3 back to Thenis for any reason the original shipping container must be used packed exactly as described in Appendix F Repackaging Instructions To ship the RES 12XR3 wthout following the procedures outlined in Appendix F may invalidate the warranty 1 9 1 Accessory Kit Each RES 12XR3 is packaged with an A ccessory Kit consisting of the following items A A Power cord Retainer Bracket B Two AC Power Cords C Two Front Bezel Barrel Keys When you unpack the RES 12XR3 please verify that all of these items are included If any of these items are missing or not as pictured please call Themis Technical Support at 510 252 0870 or send an email to support themis co
4. SAS 2 0 e System RES x2XR3S and RES x1XR3 where x 3 2 or 1 y LN4 Extra gigabit Ethernet controller for two extra ports z F IPMI blank No IPMI a The 17 deep RES XR3 chassis actually measures 17 07 deep but for simplicity will continue to be referred to as being 17 deep through out these manuals xix Themis Computer RES 12XR3 Installation Manual Configuration 7 Version 1 2 A matrix describing RES chassis configur ed for front I O connector and front PCI card access in a 16 deep chassis is given in Table 3 This chassis design makes it more convenient to install cables to the system and demands no access to the rear of the chassis except to replace a fan Figure 2 shows the front view of a standard rear I O RES 32 chassis Figure 3 on page xxi shows the rear view Figure 4 shows the front view of a front I O RES 32 chassis Figure 5 shows the rear view Table 3 Front I O 16 Deep Chassis Manual Matrix kr ee RES 32XR3 FIO Manual P N RES 22XR3 FIO Manual P N X8DAH F 2 117611 024 X8DTU F 2 117664 024 Naming Key X8uvwxyz e System RES x2XR3S and RES x1XR3 where x 3 2 0t1 RES 32XR3 FIO motherboard X8DAH F supports both audio and video however the naming key does not contain a T in the title u D Double CPU sockets S Single CPU socket v A Sound chip no graphics chip T Graphics chip no sound chip w Not applicable i SAT
5. RES 31XR3 26 Ibs 11 8 kg 1 17 Themis Computer Installation Section Chapter Installation and Operation This chapter describes e How to install a memory module st orage drive PCI card 38 mm fan power supply and lithium battery e Rack mount brackets How to turn the RES 12XR3 on and off 2 1 Installation Procedures components Wear an antistatic wrist strap and use an ESD protected mat Store ESD sensitive components in antistatic bags before placing them on any surface Handle all IC cards by the front panel or edges only t Caution Use industry standard ESD grounding techniques when handling all To install or replace a SATA II storage drive fan or power supply skip the next section and proceed directly to page 2 12 page 2 15 or page 2 17 respectively Replacement of motherboard components reguires removal of the protective cover 2 1 1 Remove Protective Top Cover To access a motherboard component open the RES 12XR3 as follows Themis Computer RES 12XR3 Installation Manual Configuration 7 Version 1 2 1 Loosen the two captive Phillips scravs holding the protective top access cover to the rear of the RES 12XR3 chassis see A Figure 2 1 2 Both the front and sides of the cover have flat hooks or tabs underneath that fit under slots on the chassis top edges see B Figure 2 1 Remove the cover by sliding it toward the rear until it is free of t
6. for example before installing extension PCI cards Operation of Laser Source Devices DVD CD ROM drives contain laser light emitting diodes classified in accordance with IEC 825 1 1993 LASER CLASS 1 and therefore must not be opened If the enclosure of such a drive is opene d invisible laser radiation is emitted Do not allow yourself to be exposed to this radiation The laser system meets the code of Federal Regulations 21 CFR 1040 for the USA and Canadian Radiation Emitting Devices Act REDR C 1370 Electrostatic Discharge ESD A sudden discharge of electrostatic electricity can destroy static sensitive devices or micro circuitry Proper packaging and grounding technigues are necessary pre cautions to prevent damage Always take the following precautions 1 Transport boards in static safe containers such as boxes or bags 2 Keep electrostatic sensitive parts in their containers un til they arrive at s tatic free stations 3 Always be properly grounded when touching a sensitive board component or assembly 4 Store electrostatic sensitive boards in protective packaging or on conductive foam Grounding Methods Guard against electrostatic damage at workstations by following these steps 1 Cover workstations with approved anti static material Provide a wrist strap connected to a work surface and properly grounded tools and equipment Themis Computer RES 12XR3 Installation Manual Configuration 7 Vers
7. has been assigned at the factory and is the baseline on which the motherboard takes action during different CPU temperature conditions 1 e by increasing CPU Fan speed triggering the Overheat Alarm etc Since CPUs can have different Temper ature Tolerances the installed CPU can now send information to the motherboard what its Temperature Tolerance is and not the other way around This results in better CPU thermal management Supermic ro has leveraged this feature by assign ing atemperature s tatus to certain thermal conditions in the processor Low Medium and High This makes it easier fo r the user to understand the CPU s tem perature status rather than by just simply seeing a temperature reading 1 e 25 C The CPU Temperature feature will display the CPU temperature status as detected by the BIOS 3 21 Themis Computer RES 12XR3 Installation Manual Configuration 7 Version 1 2 3 3 9 3 3 3 9 4 Low This level is considered as the nomal operating state The CPU temperature is well below the CP U Temperature Tolerance The motherboard fans and CPU will run normally as configured in the BIOS Fan Speed Control User intervention No action reguired Medium The processor is running warmer This is a precautionary level and gen erally means that there may be factors contributing to this condition but the CPU is still within its normal oper ating state and below the CPU
8. 4 9 Patrol Scrubbing A memory error correction scheme that works in th e background looking for and correcting resident errors The options are Enabled default and Disabled 3 3 4 10 Throttling Closed Loop Throttling Open Loop Throttling improves reliability and reduces power in the processor by automatic voltage control during proc essor idle states A vailable options are Disabled and Enabled default 3 11 Themis Computer RES 12XR3 Installation Manual Configuration 7 Version 1 2 NorthBridge Configuration 3 3 4 11 Intel OAT The Intel I OAT I O Acceleration Technology significantly reduces CPU overhead by leveraging CPU architectural improveme nts freeing resources for other tasks The options are Disabled and Enabled default 3 3 4 12 DCA Direct Cache Access Technology This feature works in conj unction with the Intel I O AT Acceleration Technology to accelerate the performance of the TOE device When this feature is set to Enabled it will enhance overall system performance by providing direct cache access for data transferring The options are Enabled default and Disabled 3 3 4 13 DCA Prefetch Delay A DCA Prefetch is used with TOE components to prefetch data in order to shorten execution cycles and maximize data pro cessing efficiency Prefetching frequently can saturate the cache dire ctory and delay necessary ca che accesses This feature reduces or increases the frequency the system prefetch
9. A TA 133 IDE controller card that su pports 48 bit LBA mode The options are disabled and Auto default Block Multi Sector Transfer Block Mode boosts the IDE drive perfor mance by increasing the amount of data transferred Only 512 bytes of data can be transferred per interrupt if Block Mode is not used Block Mode allows transfers of up to 64 KB per interrupt Select Disabled to allow data to be transferred from and to the device on e sector at a time Select Auto to allow data transfer from and to the device occur multiple sectors at a time if the device supports it The options are Auto default and Disabled 3 15 Themis Computer RES 12XR3 Installation Manual Configuration 7 Version 1 2 3 16 PIO Mode The IDE PIO Programmable I O Mode programs timing cycles between the IDE drive and the programmable ID E controller As the PIO mode increases the cycle time decreases The options are Auto default 0 1 2 3 and 4 Select Auto default to allow the AMI BIOS to automatically detect the PIO mode Use this value if the IDE storage drive support cannot be determined Select 0 4 to allow the AMI BIOS to use PIO mode 0 4 It has a data transfer rate of 3 3 MB s 16 6MB s See Table 3 1 below for PIO Mode Select options Table 3 1 PIO Mode Select Options Option Selected PIO Mode Max Transfer Rate 0 PIO Mode 0 3 3 MB s 1 PIO Mode 1 5 2 MB s 2 PIO Mode 2 8 3 MB s 3 PIO Mod
10. Auto default 32Bit Data Transfer Select Enable to enable the function of 32 bit IDE data transfer The options are Enabled default and Disabled PCI PnP Configuration Clear NVRAM This feature clears the NVRAM dur ing system boot The options are No default and Yes Plug amp Play OS Selecting Yes allows the OS to configure Plug amp Play devices This is not required for system boot if your syst em has an OS that suppor ts Plug amp Play Select No default to allow the AMI BIOS to configure all devices in the system 3 17 Themis Computer RES 12XR3 Installation Manual Configuration 7 Version 1 2 3 3 6 3 3 3 6 4 3 3 6 5 3 3 6 6 3 3 6 7 3 3 6 8 3 3 6 9 PCI Latency Timer This feature sets the latency Timer of each PCI device installed on a PCI bus Select 64 to set the PCI latency to 64 PCI clock cycles The options are 32 64 default 96 128 160 192 224 and 248 PCI IDE BusMaster When enabled the BIOS uses PCI bus mastering for reading writing to IDE drives The options are Disabled and Enabled default SR 10V Supported Select Enabled to enable Single Root I O Virtualization SR 1OV support which works in conjunction with the Intel V irtualization Technology and allow multiple operating systems running simultaneously within a single computer via natively share PCI Express devices in order to enhance network connectivity and perfor mance The options are Enabled and
11. Disabled default PCI E Slot from SXB1 PCI E Slot from SXB2 PCI E Slot from SXB3 Select Enabled to enable PCI E SXB1 slot PCI E SXB2 slot or PCI E SXB3 slot It can also enable Option ROMs to boot computer using a network interface from these slots SXB1 a x16 slot can be configured into two x8 slots SXB2 a x8 slot can be configured into two x4 slots The options are Enabled default and Disabled Onboard LAN Option ROM Select Select iSCSI to use iSCS I Option ROMs to boot the co mputing using a network device Select iSCSI to use PXE Option ROMs to boot the computing using a net work device The options are iSCSI and PXE default Load Onboard LAN1 Option ROM Load Onboard LAN2 Option ROM Select Enabled to enable the onboard LAN1 or LAN2 Option ROM This is to boot the computer using ane twork interface The opt ions are Enabled and Disabled default Boots Graphics Adapter Priority This feature allows the user to select the priority gra phics adapter for system boot The options are Onboard VGA default and offboard VGA Themis Computer 3 BIOS Setup Utility 3 3 7 3 3 7 1 3 3 7 2 3 3 8 3 3 8 1 Advanced Setup Configurations Super IO Device Configuration Serial Porti Address Serial Port2 Address This option specifies the base I O port address and the Interrupt Request address of Serial Port 1 and Serial Port 2 Select Disabled to prevent the serial port from access ing any system reso
12. Disabled to turn of f Console Redirection after Power On Self Test POST Select Always to keep Console Redirection active all the time after POST Note This setting may not be supported by some operating systems Select Boot Loader to keep Console Redirection active during POST and Boot Loader The options are Disabled Boot Loader and Always default Terminal Type This feature allows the user to select the target terminal type for Cons ole Redirec tion The options are ANSI VT100 default and VT UTF8 VT UTF8 Combo Key Support A terminal keyboard definition that provides a way to send commands from a remote console Available options are Enabled default and Disabled Sredir Memory Display Delay This feature defines the lengt h of time in seconds to display memory information The options are No Delay default Delay 1 Sec Delay 2 Sec and Delay 4 Sec Hardware Health Event Monitoring This feature allows the user to monitor system health and review the status of each item as displayed CPU Overheat Alarm This option allows the user to se lect the CPU Overheat Alarm setting which determines when the CPU OH alarm will be activated to provide warning of possible CPU overheat Themis Computer 3 BIOS Setup Utility Advanced Setup Configurations A Caution 1 Any temperature that exceeds th e CPU threshold temperature pre defined by the CPU manufacturer may result in CPU overheat or system instabi
13. Force BIOS default and Keep Current Bootup Num Lock This feature selects the Power on state for Numlock key The options are Off and On default Wait For F1 If Error This forces the sys tem to wait until the F 1 key is pressed if an error occurs The options are Disabled and Enabled default Hit Del Message Display This feature displays Press DEL tor un Setup during POST The options are Enabled default and Disabled Interrupt 19 Capture Interrupt 19 is the software interrupt that controls the boot drive function When this item is set to Enabled the ROM BIOS of th e host adaptors will c apture Interrupt 19 at boot and allow the drives that are attached to these host adaptors to function as bootable drives If this item is set to Disabled the ROM BIOS of the host adaptors will not capture Interrupt 19 and the drives attached to these adaptors will not func tion as bootable devices The options are Enabled default and Disabled Power Configuration Watch Dog Function If enabled the Watch Dog Timer will allow the system to reboot when it is inactive for more than 5 minutes The options are Enabled and Disabled default Power Button Function If set to Instant_Off the system will power off immediately upon pressing the power button If set to 4 Second Override the system will power off when the user presses the power button for 4 seconds or longer The options are Instant_Off default and 4
14. Second_override Themis Computer 3 BIOS Setup Utility 3 3 2 3 3 3 3 3 3 3 1 3 3 3 2 3 3 3 3 3 3 3 4 3 3 3 5 Advanced Setup Configurations Restore on AC Power Loss Use this feature to set the power state after a power outage Select Power Off for the system power to remain of f after a power loss Select Power On for the system power to be turned on after a power loss Select Last State to allow the system to resume its last state before a power loss The opti ons are Power On Power Off and Last State default Processor and Clock Options This submenu allows the user to configure the Processor and Clock settings Clock Spread Spectrum Select Enable to use the feature of Clock Spectrum wh ich will allow the BIOS to monitor and attempt to reduce the level of Electromagne tic interference caused by the components whenever needed The options are Disabled default and Enabled Hardware Prefetcher Available when supported by the CPU If set to Enabled the hardware pre fetcher will pre fetch streams of data and instruc tions from the main memory to the L2 cache in the forward or backward manner to improve CPU performance The options are Disabled and Enabled default Adjacent Cache Line Prefetch Available when supported by the CPU The CPU fetches the cache line for 64 bytes if this option is set to Disabled The CPU fetches both cache lines for 128 bytes as comprised if Enabled default L
15. Starting BIOS Setup Utility 3 Stereo Audio Jack D 3 Stereo Audio Ports D 6 Storage drives 2 7 storage drives installation 2 14 storage drives unlocking 2 3 Super I O 1 8 Super IO Device Configuration Serial Port Address 3 19 Serial Port2 Address 3 19 Serial Port2 Attribute 3 19 SuperMicro X8DTU F xvii SVGA connector 2 21 Switch module Remote D SXB1 J2 2 7 SXB2 J1 2 7 SXB3 J3 2 7 system LEDs 1 8 NIC Gb Ethernet 7 11 Overheat 7 11 Power 2 11 Power Fail LED 7 10 Power Fail LED Left 7 10 Power Fail LED Off 7 10 Power Fail LED Right 7 10 SAS SATA storage drives 2 11 System Memory System Memory Size 3 4 System Power 1 15 System Resource Alert optional 1 7 T Technical Support 1 17 temperature xxii threshold temperature 3 21 TTYA COM1 A 2 Turning the System Off 2 21 Turning the System On 2 20 U Upper Right PCI Expansion Slot 2 10 USB Ports D 4 USB ports A 2 D 4 USB Serial Ports 1 12 V Version Revision History iii VGA graphics port A 4 View BMC System Event Log Clear BMC System Event Log 3 25 Virtualization Technology 3 2 VMM 3 12 W Warnings xxiii Website Information xxii Winbond WPCM450 1 8 Windows 2003 1 7 Windows 2008 1 7 X X8DTU F Motherboard 3 1 Index 7 Themis Computer RES 12XR3 Installation Manual Configuration 7 Version 1 2 Index 8 Themis Computer Place Stamp Here Themis Computer 47200 Bayside Parkway Fremont CA 94538 At
16. T emperature Tolerance The motherboard fans and CP U will run normally as configured in the BIOS The fans may adjust to a faster speed depending on the Fan Speed Control settings User intervention No action is required However consider checking the CPU fans and the chassis ventilation for blockage High The processor is running hot This is a caution level since the CPU s Tem perature Tolerance has been reached or has been exceeded and may activate an overheat alarm User intervention If the system buzzer and Overheat LED has activated take action immediately by checking the system fans chassis ventilation and room tem perature to correct any problems Note 1 The system may shut down if it continues for a long period to prevent damage to the CPU 2 The information provided above is for your reference only For more informa tion on thermal management please refer to Intel s Web site at www Intel com System Temperature The system temperature will be displayed in degrees in Celsius and Fahrenheit as it is detected by the BIOS Fan 1 Fan 8 Reading This feature displays the fan speed readings from fan interfaces Fan 1 through Fan 8 Fan Speed Control Modes This feature allows the user to decide how the system controls the speeds of the onboard fans The CPU temper ature and the fan speed ar e correlative When the CPU on die temperature increases the fan speed will also increase for effecti
17. ankeete 3 10 334 5 CORIO sae VL akaatsia laad 3 11 3 3 4 6 Memory Frequency aaasta ace cetuaneceateeneseens 3 11 Soot Memory Mode viksid kaikaid alea alamik oaks 3 11 3 3 4 8 Demand Scrubbing aa kaleva 3 11 SOO Patrol SCRUB DMD ocre on a nla an 3 11 3 3 4 10 Throttling Closed Loop Throttling Open Loop 3 11 SSA MeL OAT islands alusel valima dal eakad a 3 12 3 3 4 12 DCA Direct Cache Access Technology iemeneee 3 12 3 3 4 13 DCA Prefetch Delay mus kl saadik tases 3 12 BS ALAC TMG LV THe seas tet eczassanoncnedanpustes yevnnca S 3 12 3 3 4 15 Active State Power Management cssccsssccsercssccssecssseseees 3 12 3 3 4 16 Slot SXB2 SXB3 Width s actwceada eases aasa 3 12 3 3417 Slot SXB 1 Width sinccr neea ia 3 13 3 3 4 18 IOH PCI E Max Payload Size eeceececcseesseceteceseeeeeeesteeessenees 3 13 3 3 419 USB Functions saavutame mammu 3 13 3 04 20 Legacy USE SUPPO oiin l nt r kemikaal 3 13 3 3 4 21 Port 60h 64h Emulation 1 ikid at dl kile pada a kali 3 13 3 3 4 22 USB 2 0 Controller Available when USB Functions is Disabled 3 13 3 3 4 23 USB 2 0 Controller Mode sascs cssccatssentsssderseuassnrencssaneducadadouseeaves 3 13 3 34 24 BIOS ERACI Hand OPL lorsteetrnsa ava atv 3 14 3 3 4 25 Route Port 80h Cycle to nutma ksams ss gis 0 3 14 3 3 5 IDE SATA Floppy Configuration isiscsesccutiannnashicasdaahaiorreudiavauees 3 14 2 2 SA LAF Configurati n pikse k
18. as an x86 RDTSC Instruc tion embedded in the CPU The HPET is used to replace the 8254 Programmable Interval Timer Options are Enabled default and Disabled 3 3 10 2 ACPI Aware O S Select Yes to enable ACPI support for an operating system that supports ACPI Select No to disable ACPI support for an OS that does not support ACPI The options are Yes default and No 3 3 10 3 ACPI APIC Support Select Enabled to include the ACPI APIC Table Pointer in the RSDT Root System Description Table pointer list The options are Enabled default and Disabled 3 23 Themis Computer RES 12XR3 Installation Manual Configuration 7 Version 1 2 3 3 10 4 APIC ACPI SCI IRA When this item is set to Enabled APIC ACPI SCI IRQ is supported by the system The options are Enabled and Disabled default 3 3 10 5 Headless Mode This feature is used to enable system to function without a keyboard monitor or mouse attached The options are Enabled and Disabled default 3 3 10 6 ACPI Version Features The options are ACPI v1 0 ACPI v2 0 default and ACPI v3 0 Please refer to ACPI s website for further explanation http www acpi info 3 3 10 7 NUMA Support Select Enabled to use the feature of Non Uniform Memory Access to improve CPU performance The options are Disabled Enabled default and NUMA for SLES 11 SUSE Linux Enterprise Server 11 3 3 10 8 WHEA Support Select Enabled to enable W indows Hardware Error Architecture WH
19. cord retainer bracket 1 17 Power On Self Test POST 3 2 Processor Processor CPU Type 3 4 processor 1 4 Processor and Clock Options 3 7 ACPI T State 3 10 Active Processor Cores 3 9 Adjacent Cache Line Prefetch 3 7 C1 Auto Demotion 3 9 CIE Support 3 9 C3 Auto Demotion 3 9 Clock Spread Spectrum 3 7 C State package limit setting 3 9 Data Reuse Optimization 3 7 DCA Prefetch Delay 3 10 Execute Disable Bit Capability 3 8 Hardware Prefetcher 3 7 Intel AES NI 3 8 Intel EIST Technology 3 9 Intel Virtualization Technology 3 8 Intel C STATE Tech 3 9 Index 5 Themis Computer RES 12XR3 Installation Manual Configuration 7 Version 1 2 Intel TurboMode Technology 3 9 L1 Data Prefetch 3 7 MPS and ACPI MADT Ordering 3 8 Simultaneous Multi Threading 3 8 Processor Logical Count 3 4 Processor Physical Count 3 4 Processor Speed 3 4 protective cover chassis 2 7 PS 2 keyboard A PS 2 mouse A R rack mount brackets 2 19 rack mount slides xxii 7 18 B 1 installation kit B 2 screw locations B rack mount slides optional 2 19 rear panel 1 4 Rear Panel I O 1 4 Red Hat Enterprise Linux C Remote Access Configuration Remote Access 3 19 Flow Control 3 19 Redirection After BIOS POST 3 20 Serial Port Mode 3 19 Serial Port Number 3 19 Sredir Memory Display Delay 3 20 Terminal Type 3 20 VT UTF8 Combo Key Support 3 20 Remote On Off Switch module D 1 configuration D 2 ordering D 2 Repackaging order of assembly E 4 Pa
20. do not shut down or reset the system while the BIOS is updating This is to avoid potential boot fail ure 3 2 Themis Computer 3 BIOS Setup Utility 3 2 3 2 1 3 2 1 1 J Main BIOS Setup When you first enter the AMI BIOS Setup Utility you will enter the Main setup screen You can always return to the Main setup screen by selecting the Main tab on the top of the screen The Main BIOS Setup screen is shown in Figure 3 1 BIOS SETUP UTILITY System Time Figure 3 1 Main BIOS Setup Screen System Overview The following BIOS information will be displayed System Time System Date Employ this option to alter the system time and date Highlight System Time or Sys tem Date using the arrow keys Key in new va lues through the keyboard and press lt Enter gt Press the lt Tab gt key to move be tween fields The date has be entered in Day MM DD YY format The time is entered in HH MM SS format Note The time is in the 24 hour format For example 5 30 P M appears as 17 30 00 3 3 Themis Computer RES 12XR3 Installation Manual Configuration 7 Version 1 2 3 4 3 2 1 2 AMI BIOS 3 2 1 3 3 2 1 4 e Version This item displays the BIOS revision employed in your system e Build Date This item displays the date when this BIOS was finished Processor The AMI BIOS will automatically display the status of the processor employed in your System e CPU Type This item displays
21. drawing Legend Screw Hole Size 4mm Figure B 1 Screw Locations for Rack Mount Slides Dimensions of the screw hole patterns on the sides of the RES 12XR3 chassis for installing rack mount slides are shown in Figure B 1 The required holes for a spe cific steel or aluminum slide will have to be measured before installation B 1 Themis Computer RES 12XR3 Installation Manual Configuration 7 Version 1 2 Caution Any screws used to mounta slide to a RES 12 chassis must not exceed a length of 6mm to prevent excessive penetration of the chassis The rack mount slide installation kit 119123 L01 includes the following items a Two inside slide sections b Two outside slide sections c Two front short slide brackets d Two rear long slide brackets e Assorted screws washers and nuts Kit 110854 003 Follow these steps to install a steel rack mount slide to the RES 12XR3 chassis 1 Attach the inside slide section see Figure B 2 on page B 3 to both sides of the RES 12XR3 chassis using four M4x6mm screws per side 2 Measure the depth of the 19 equipment rack into which the RES 12XR3 sys tem will be installed this can vary from 24 to 30 3 Using the depth of the e quipment rack adjust and attach the front and rear slide brackets to the outside slide section using the M4x10mm screws wash ers and nuts provided with the slide kit 4 With all slide brackets securely attached to both the right
22. e System RES x2XR3 where x 3 2 or 1 v A Sound chip no graphics chip T Graphics chip no sound chip Configuration 6 motherboard X8DAH F supports both audio and video however the naming key does not contain a T in the title w H Two Tylersberg Northbridge chips blank One Tylersberg Northbridge chip U Motherboard with cutout x i SATA only 3 SAS1 0 6 SAS2 0 y LN4 Extra gigabit Ethernet controller for two extra ports z F IPMI blank No IPMI a All motherboards measure 12 W x 13 L except X8DTN and X8DAH F which are 13 68 W x 13 L xviii Themis Computer Preface Table 2 RES x2XR3S RES x1XR3 17 Deep Chassis Manual Matrix Mother rite RES 32XR3S RES 22XR3S RES 12XR3S RES 31XR3 RES 21XR3 RES 11XR3 board kets Manual P N Manual P N Manual P N Manual P N Manual P N Manual P N X8DTL 6F 2 117408 024 117412 024 117416 024 X8DTL 6 X8DTL 3F 2 117409 024 117413 024 117417 024 X8DTL 3 AOD TEAR 2 117410 024 117414 024 117418 024 X8DTL i ei 2 117411 024 117415 024 117419 024 X8DAL i X8SAX 1 117420 024 117421 024 X8ST3 F 1 117 024 117422 024 X8STE 3899 9 X8STi ad 1 118188 024 117423 024 X8STi LN4 X8STi 3F Naming Key X8uvwxyz u D Double CPU sockets S Single CPU socket v A Sound chip no graphics chip T Graphics chip no sound chip w Not applicable i SATA only 3 SAS 1 0 6
23. lt P2 DIMM 2A P2 DIMM 3B Branch 2 lt P2 DIMM 3A P1 DIMM 1B Branch 0 lt P1 DIMM 1A P1 DIMM 2B Branch 1 lt P1 DIMM 2A lt P1 DIMM 3B St P1 DIMM 3A Branch 2 TET a Figure 2 3 Memory Module Slot Locations X8DTU F Motherboard 1 If a module is already seated in the slot you have selected for installation remove it by gently pressing down and outward on the latches at both ends of the slot see Figure 2 4 on page 2 6 then pulling the old module directly up from the slot until it is free of the connector see Figure 2 4 2 5 Themis Computer RES 12XR3 Installation Manual Configuration 7 Version 1 2 2 6 Press latch downward 8 outward at each end 2 1 3 Figure 2 4 Memory Module Removal 2 Before inserting a new memory module in to the vacant slot make sure that the two latches are pulled outward away from the center of the slot With the latches in the outward position gently insert the new module verti cally into its slot and press firmly downward until it snaps into place Note Make sure the memory module has the proper orientation by align ing the alignment notch at the bottom edge with its counterpart ridge at the bottom of the slot If all the memory modules have been re placed in the system replace the air flow diverter and secure it with the eight screws previously removed Replace the PCI card retainer bracket and secure it with the single screw remove
24. one physical computer The options are Enabled default and Disabled Note If there is any change to this settng you must power off and restart the sys tem for the change to take effect Please refer to Intel s web site for detailed infor mation Execute Disable Bit Capability Available when supported by the CPU Set to Enabled to enable the Execute Disable Bit which will allow the pr ocessor to delegate areas in the system memory wh ere an application code can execute and where it cannot thus preventing a worm or a virus from floo ding illegal codes to overwhelm the processor or damage the system during an at tack The default is Enabled default Refer to Intel and Microsoft Web Sites for more information Intel AES NI Select Enable to use the Intel Advanced Encryption Standard AES New Instruc tions NI to ensure data security The options are Disabled default and Enabled 3 3 3 10 Simultaneous Multi Threading Available when supported by the CPU Set to Enabled to employ the Simultaneous Multi Threading Technology which will result in enhanced CPU performance e The options are Disabled and Enabled default Themis Computer 3 BIOS Setup Utility Advanced Setup Configurations 3 3 3 11 Active Processor Cores Set to Enabled to employ a processor s Second Core and beyond Please refer to Intel s web site for more information The options are All default 1 and 2 3 3 3 12 Intel EIST Tech
25. sys tem maintenance Logging in as root gives you complete control over your system see Figure C 15 on page C 15 C 14 Themis Computer C Red Hat Enterprise Linux 5 Installation Installation RED H T ENTERPRISE LINUX 5 The root account Is used for administering the system Enter a password for the root user Root Password eeeees Confirm seeeres A Retease Notes Back gt Next 5 Figure C 15 Setting Up Root Account and Password Click Next Step 16 Now that you have made most of the choices for your installation you are ready to confirm the default packag e selection or customize packages for your sys tem The Package Installation Defaults screen appears and details the default package set for your Red Hat Enterprise Linux installation This screen varies depending on the version of Red Hat Enterprise Linux you are installing see Figure C 16 on page C 16 To customize your package set further select the Customize now option on the screen Clicking Next takes you to the Package Group Selection screen You can select package groups which group components together according to func tion for example X Window System and Editors individual packages or a com bination of the two C 15 Themis Computer RES 12XR3 Installation Manual Configuration 7 Version 1 2 To select a component click on the checkbox beside it RED HAT ENTERPRISE LINUX 5 The defaul
26. that the system is exceeding specified temperature parameters The CPU overheat warning function mustbe enabled in the BIOS thus allowing the user to define an overheat temperature which when exceeded trig gers the overheat warning LED Symbol Rear Panel LED s Description N A LAN1 and LAN2 Each Ethernet port contains two LEDs e The color of the left LED when facing the port indicates the LAN connection speed Off 10 MHz Green 100 MHz Amber 1 GHz e The right LED when lit indicates LAN activity a NIC Network Interface Controller Themis Computer RES 12XR3 Installation Manual Configuration 7 Version 1 2 1 12 Table 1 5 Rear Panel I O Connectors Connector Description PS 2 Mouse e 6 pin mini DIN connector to attach a PS 2 mouse device PS 2 Keyboard e 6 pin mini DIN connector to attach a PS 2 keyboard device USB 0 and USB 1 Hi Speed USB 2 0 Serial Ports e Two 4 pin USB connectors to attach serial devices to USB port 0 and USB port 1 Note Six additional USB ports USB 2 through USB 7 can be ac cessed directly from the motherboard COM 1 Serial Port e One DB9 male connector on rear panel to attach a serial device to COM port A second serial port COM 2 can be accessed directly from the motherboard VGA Graphics Con nector e One 17 pin VGA connector to provide a video and CRT display
27. when supported by the CPU mmemeennneenne 3 8 3 3 3 8 Execute Disable Bit Capability Available when supported by the CPU mmmeenmmeenne 3 8 333 9 Tnte AE S Ni armus masala muss 3 8 3 3 3 10 Simultaneous Multi Threading Available when supported by the CPU mmmmeenmmeeene 3 8 3 3 3 11 Active Processor Cores j cisscatecarseascuedsaadexty disiuderselecerpsoadeartansenrea 3 9 3 3 3 12 Intel EIST Technology 5 aitas tena task ihade ootele 3 9 3 3 3 13 Intel TurboMode Technology mmmtseennteneeee 3 9 ix Themis Computer RES 12XR3 Installation Manual Configuration 7 Version 1 2 333 14 CAE SUPP GLU Zarasai ars arna AE ia AEE Eae alea 3 9 3 33 15 MEI C STA LE Tech nieas kesinin oasian n RTE AEE laad 3 9 3 3 3 16 C State package limit setting ossosesseseseseesseseesseessessessressessresees 3 9 3 3 3 17 Cl Auto Demotion iisisti isiingie iian 3 9 3 3 3 18 C3 Auto Demotion sssessssessessessesseseesesseseesssseesessesesseseesesseesessesee 3 9 3 3 3 VO VA CPI T State NASA lt ahem cides ASS E 3 10 3 3 4 Advanced Chipset Control ii itamikis vetest talans atakki talad 3 10 3 3 4 1 CPU Budge Configuration isnot csc toena veikan vu vad taa 3 10 3 3 4 2 Request Transaction ID Available for the Intel Xeon 5600 platform only 3 10 3 3 4 3 ORME mks Speed iaiaeiaeiaa eE ore seta 3 10 3 344 QPL Frequency sena i Ee E esik alakeha
28. 1 2 1 Make sure the necessary precautions have been observed as per the previous Note see Operation on page 2 20 2 Locate the drive to be removed 3 Insert the barrel lock key into the hard drive you want to remove and turn it 45 degrees clockwise presuming the storage drive is locked 4 Firmly push in the latch lock until the latch handle releases from the drive 5 Grab the latch handle and pull the drive completely away from its slot Caution When pulling the storage drive from the chassis hold it at the bot tom to prevent it from falling and damaging the drive A Insert key into barrel lock and turn 45 degrees clockwise B push the latch lock C and pull drive out with the latch handle Barrel Key Latch Handle Figure 2 14 RES 12XR3 Storage Drive Removal 2 1 5 3 Storage Drive Installation To install a storage drive 1 Make sure the latch handle of the drive to be installed is in the open position 2 Properly orient the new driv e and insert it into the vacant drive slot If the drive cannot be inserted into the slot rotate it 180 degrees 2 14 Themis Computer 2 Installation and Operation Installation Procedures 3 Push the drive toward the rear DO NOT CLOSE the latch handle while push ing until the drive is flush with the front of thechassis The handle will swing closed when it comes into contact with the RES 12XR3 chassis 4 When the dr
29. 1 Data Prefetch Available when supported by the CPU Select Enabled to enable Level 1 data pr efetch support to enha nce system perfor mance for UP platforms For DP MP servers use this feature to enhance system per formance based on the specification of the a pplication running in the system at the time the options are Disabled and Enabled default Data Reuse Optimization Available when supported by the CPU For UP Platforms select Enabled to maximize data reuse support to enhance system performance For DP MP servers enable or disable this feature based on application specifications the options are Enabled default and Disabled 3 7 Themis Computer RES 12XR3 Installation Manual Configuration 7 Version 1 2 3 8 3 3 3 6 3 3 3 7 3 3 3 8 3 3 3 9 MPS and ACPI MADT Ordering This feature allows the user to configure the MPS multiprocessor Specification and ACPI settings for your motherboard Select Modern Ordering if Windows XP ora newer version of Windows OS is used in the motherboard Select Legacy Ordering if 2000 or an earlier version of Windows OS is used The options are Modern Order ing default and Legacy Ordering Intel Virtualization Technology Available when supported by the CPU Select Enabled to employ the feature of Virtualization Technology to allow one plat form to run multiple operati ng systems and applications in independent partitions producing multiple virtual systems in
30. 1 View Event Log Use this option to view the System Event Log 3 3 14 2 Mark All Events as Read This option marks all events as read The options are OK and Cancel 3 3 14 3 Clear Event Log This option clears the Event Log memory of all messages The options are OK and Cancel default 3 3 14 4 PCIE ErrorLog Use this option to enable PCI E er ror PERR logging The options are Yes and No default 3 3 14 5 Memory Error Log Use this option to enable memo ry error logging The options are Yes default and No 3 27 Themis Computer RES 12XR3 Installation Manual Configuration 7 Version 1 2 3 4 Security Settings The AMI BIOS provides a Supervisor a nd a User password If you use both pass words the Supervisor password must be set first Change Sup rutsor Password Figure 3 3 Security Settings 3 4 1 Supervisor Password This item indicates if a Supervisor password has been entered for the system Not Installed means a Supervisor password has not been used 3 4 2 User Password This item indicates if a user passwor d has been entered for the system Not Installed means that a user password has not been used 3 4 3 Change Supervisor Password Select this feature and press lt Enter gt to access the submenu and then type in a new Supervisor Password 3 28 Themis Computer 3 BIOS Setup Utility 3 4 4 3 4 5 3 4 6 3 4 7 3 4 8 Security Settings User
31. 2 Rack Mount Slides Optional islissaikanvvdilik ikk aonaapiakdakosaake ta aahaasemateae la 1 18 2 Installation and Operation 24444 1 0 tassvmbtavimias tas dnaikkat saatan jast aatatel dna anoressneeee 2 1 2 1 MmstallatiomibProeediutesu samades ksususaatuts kuus 2 1 2 1 1 Remove Protective Top Cover 2 1 21 2 Memory Modules 24 aid mmm aal 2 3 2 12 1 AAA ON s alati Stat aal 2 4 Desh PCC At gt PESE AIAST ie UE MASS A 2 6 24 31 Tnstallinge Cards ST 2 9 Zola Lithium Battery radiaan aaa da cise Deuces a 2 11 2 1 4 1 Removing the Lithium Battery mmemteenreneee 2 11 2 1 4 2 Installing a Lithium Battery mieevemeenneenneenenenenee ei 2 12 21 5 SATA IL Storage Drive akut E E 2 12 2 1 5 1 Opening the RES 12XR3 Front Doors sssesesssessessesessseseesesse 2 13 2 1 5 2 Storage Drive Removal ssssessessseessesesssesseseesressressesrrssressesses 2 13 2 1 5 3 Storage Drive Installation s sossseeseesessesseseessressessrssressessrssees 2 14 2 1 6 Hot Swappable 38 mm Fan s3 ssicisaaticazsaccsasevsscdsbiveaaassazieansbassensssensdcanians 2 15 2 1 6 1 Removing and Installing a 38 mm Fan occ eeeeeeeeteeeeeeeee 2 15 211 PAEL SUPPI oi dasani a a aaeei 2 17 2 1 7 1 Removing a Power Supply mimtemtenneeneeeenneennneeea 2 17 2 1 7 2 Installing a Power Supply Sirteasat masinaks e vidaeadat dha ud ask eakaid 2 18 2 2 4 Rack MOUNIS int aiaiai sans alalt ajatada AERO ji 10 2 19 224
32. 2 Overheat Power ON OFF Drives Fail Fail Fan Fail Button PS1 PS2 Left Power Right Power Supply Supply Not Used PCI Expansion Card Upper Left Side Upper Right Side Rear Panel NE as viewed from rear of system PCI Expansion Card Lower Right Side IPMI Dedicated LAN UID Switch Rear I O Panel abe PS 2 Mouse green PS 2 Keyboard purple USB Port 1 top COM Port 1 Turquoise VGA Blue LAN 1 LAN 2 USB Port 0 bottom Gigabit Ethernet Figure 1 5 RES 12XR3 System LEDs and I O Connectors X8DTU F Motherboard 1 9 Themis Computer RES 12XR3 Installation Manual Configuration 7 Version 1 2 Table 1 3 Power Supply LED Behavior Symbol LED Power System LED Description On Power Fail LED e If system is powered e red LED Left Power Supply on warns that the upper 74 power supply has failed Note system is powered on or has lost AC input On Power Fail LED e If system is powered s red LED Right Power Supply on warns that the lower Z power supply has failed Note system is powered on or has lost AC input Off Power Fail LED e System is powered on e Left amp Right Power supply and power supply mod Z ules are functioning nor Note system is powered on mally or system has been And shut down and there has 5 been no interruption to A the AC power
33. 2XR3 Installation Manual Configuration 7 Version 1 2 B 4 Themis Computer Appendix Red Hat Enterprise Linux 5 Installation C 1 Introduction Welcome to the Red Hat Enterprise Linux Installation Guide This guide contains useful information to assist you during th e installation of Red Hat Enterprise Linux via DVD device From fundamental concepts such as installation preparation to the step by step installation procedure C2 Installation Step 1 Insert the Redhat Enterprise Linux 5 DVD and Power on the system you will see the first installation screen wi th a boot prompt pres s ENTER to begin installation see Figure C 1 on page C 2 C 1 Themis Computer RES 12XR3 Installation Manual Configuration 7 Version 1 2 RED HAT ENTERPRISE LINUX 5 To install or upgrade in graphical mode press the To install or upgrade in text mode type Use the function keys listed below for more information Fi Main F2 Options F3 General1 F4 Kernel FS5 Rescuel Figure C 1 Power On after Linux DVD is Inserted into Drive Step 2 Press the tab key to move focus to the Skip key then press Enter key to Continue see Figure C 2 Bed Hat Enterprise To begin testing the CD media before installation press OK Choose Skip to skip the media test and start the Installation Figure C 2 Skip Key Themis Computer C Red Hat Enterprise Linux 5 Installation
34. 3 Themis Computer RES 12XR3 Installation Manual Configuration 7 Version 1 2 3 34 Themis Computer Appendix Connector Pinouts This appendix provides connector pinouts for all standard user I O interfaces on the rear I O panel of the RES 12XR3 Note For all special configuration I O addons please refer to the manufacturers original documentation for information regarding Pinouts and signal definitions A 1 PS 2 Keyboard and Mouse The RES 12XR3 provides a 6 pin female mini DIN connector for the PS 2 key board and another for the PS 2 mouse Pi nouts and signal definitions for both con nectors are defined in Table A 1 Table A 1 PS 2 Keyboard Mouse Pinouts and Signal Definitions Pin Signal Name Pinout 1 Keyboard Mouse data 5 6 2 N C 3 Ground 3 4 4 Vcc 5V 5 Keyboard Mouse clock l 6 N C A 1 Themis Computer RES 12XR3 Installation Manual Configuration 7 Version 1 2 A 2 USB Ports The RES 12XR3 supports two USB Universal Serial Bus ports see Figure A 1 for pinouts USB 0 and USB 1 on the rear I O panel In addition six USB ports are supported from internal headers USB 2 3 USB 4 5 USB 6 and USB 7 Pinout descriptions are listed in Table A 2 Figure A 1 USB Connector Pinout Table A 2 USB Connector Signal Definitions Pin Signal Name Pin Signal Name 1 5V 3 PO 2 PO 4 GND A 3 Serial Por
35. 3 14 2 Mark All Events as Read 1 cssestacsstoreriseelatepisheancuoinsasdathenstiaest 3 27 3 3143 Clear EVENT GE siise i aina E RARE ANS 3 27 3 3144 PCIE Error Lot ae sulle N a lalla 3 27 3 3 14 5 Memory Error L0G nicht sac cot n en aa RRE a s 3 27 3 4 Security SUING Si SS SR SS 3 28 3 4 1 Supervisor Password letti aasal mainet aaa aes 3 28 3 42 User Password iim assassinated awd ately 3 28 3 4 3 Change Supervisor Password summutatud 3 28 3 4 4 User Access Level Available when Supervisor Password is set as above 3 29 3 4 5 Change User PassWord x arenira iiti carenta iatna E aaah 3 29 3 4 6 Clear User Password Available only when User Password has been set 3 29 2401 Password CHECK vrakiks baa vtadeled sd eel lamavad aal M lu kaield 3 29 3 4 8 Boot Sector Virus Protection aniis vainian lvaks aedu vdekeeta ladekaks oe aa 3 29 3 5 Boat Configuration sirnane annn Ys kaateti lade aig E aad 3 30 331 Boot Device Priority reisens onratu aat konjak stand kanad makaak 3 30 392 Storage VES ta usa ae e a E E samma mie ju 3 30 3 5 3 Removable Dienas Aaa na 3 31 3 354 CD DVD DIVES hra rer aa aka va eal ja kaa abikaasat 3 31 39 32 USB T E ES alia aadi tn lt antama ui i 3 31 S00 gt Network DRIVES iidse vulkaan ndash 3 31 3 6 EU OPUONS aee an r R A K EIN aul ot tele lees tat 3 32 3 6 1 Save Changes and Exit ons akti muses ala ai kvaale 3 32 3 6 2 Discard Changes and Exit ok
36. 3 3 9 2 CPU 1 Temperature CPU 2 Temperature System SHIP STATUS a aaa a a r N 3 21 3 3 9 3 Fan l Fan 8 Reading iki tallad da 3 22 3 3 9 4 Fan Speed Control Modes rs vuaiie dialekt a 3 22 3 3 9 5 Voltage Monitoring maas aki a hte catch atcha 3 23 33 10 ACPI Config ralo enaner leia ae eaii 3 23 3 3 10 1 High Performance Event Timer ass ssansgaa elaks kaak kakssada haa e 3 23 3 3 10 2 ACPh Aware OVS suitsus a E E EA E 3 23 3 3 10 3 ACPI APIC Support aastata 3 23 3 3 104 APIC AEPESCLIRO neon E ER ER 3 24 3 3 10 5 Headless Mode jsicdsccessasccivsitemteisnasciahedieeiennicaesdewueateiauien 3 24 3 3 10 6 ACPI Version Features ekskaasa atika aada kaa eaka 3 24 DOI NUMA SU OL aiae l n e cheng decentenne eaten E REA 3 24 33 10 8 WHEA SUPDOLE noieta iio a E E E ASA 3 24 3 3 11 IPMF Configuration E ausat gu 3 24 3 3 11 1 IPMI Firmware Version cso csuinesvaedesaiqudscacs avadeacuesecaelescanti vader 3 24 3 3 11 2 Status of BMC Working sisescsscasisteiaccsavseiassiavvaessianneialevedeasleaenns 3 24 3 3 12 View BMC System Event Log ssssesssssessseesessessresseessesresseesressrssresressessess 3 25 3 3 12 1 Clear BMC System Event Log sssessssessesssseseseessesesssesseserssresse 3 25 xi Themis Computer RES 12XR3 Installation Manual Configuration 7 Version 1 2 3 3413 Set LAN COR out ati esensina bsesastesazadcase Se taandas athe E RAOR ARE 3 26 3 3 14 Event Log Configuration has easier kalade 3 27 23141 View Event Log ammuilma 3 27 3
37. 79c970 PCnet32 LANCE Hardware address 00 0C 29 42 45 96 F Use dynamic IP configuration DHCP Enable IPv4 support Enable IPv6 support i Activate on boot Address Prefix Netmask X Cancel Jox Figure C 13 Edit Interface Pop Up Screen Click OK Step 14 Set your time zone by selecting the city closest to your computer s physical location Click on the map to zoom into a particular geographical region of the world see Figure C 14 on page C 14 From here there are two ways for you to select your time zone e Using your mouse click on the interactive map to select a specific city repre sented by a yellow dot A red X appears indicating your selection e You can also scroll through the list at the bottom of the screen to select your time zone Using your mouse click on a location to highlight your selection C 13 Themis Computer RES 12XR3 Installation Manual Configuration 7 Version 1 2 RED HAT ENTERPRISE LINUX 5 Please click into the map to choose a region America New_ York gt Easter Time System clock uses UTC D Retease Notes Back 4 Next Figure C 14 Selecting Time Zone Click Next Step 15 Setting up a root account and password is one of the most important steps during your installation Your root account is similar to the administrator account used on W indows NT machines The root account is used to install packages upgrade RPMs and perform most
38. A only 3 SAS 1 0 6 SAS 2 0 y LN4 Extra gigabit Ethernet controller for two extra ports z F IPMI blank No IPMI Figure 2 Front View of a Standard Rear I O RES 32 Chassis Doors Removed XX Themis Computer Preface JEE A 0 OS HITI iiil 111 MIINA Figure 4 Front View of a Front I O RES 32 Chassis Figure 5 Rear View of a Front I O RES 32 Chassis Themis Computer RES 12XR3 Installation Manual Configuration 7 Version 1 2 xxii The 1RU high 1 75 RES 12XR3 has been designed to fit into a standard 19 rack and is provided with rack mount brackets with handles Optional rack mount slides are also available The RES 12XR3 is rugged enough to withstand extreme shock up to 35G temperature and EMI as that associated with such demanding markets as the military aerospace and telecommunications industries Intel processors supported by RES 12XR3 include either Two Intel 5500 Series Xeon Quad Core CPUs or Two Intel 5600 Series Xeon Quad Six Core CPUs which operate at a QPI QuickPath Interc onnect up to 6 4 GT s and support a total memory capacity of 192 GigaBytes 12 16 GB DIMMs using 1066 MHz DDR3 ECC Registered memory modules Changing memory speeds 1333 MHz and 800 MHz is supported by lower capacity DIMMs hence lower total memory capacity RES 12XR3 is based on the functionality and capability of the following Intel chip set e Intel 5520 Tyl
39. Access Level Available when Supervisor Password is set as above Select Full Access default to grant the User full access to the Setup Utility and change Setup settings Select View Only to allow the user access to the Setup Utility and view the settings without making change s Select Limited to allow the user to change selected settings such as Date and Time Select No Access to prevent the User from accessing the Setup Utility Change User Password Select this feature and press lt Enter gt to access the submenu and then type in a new User Password Clear User Password Available only when User Password has been set This item allows you to clear a user password after it has been entered Password Check This item allows you to check a password after it has been entered The options are Setup default and Always Boot Sector Virus Protection When Enabled the AMI BIOS displays a warning when any program or virus issues a Disk Format command or attempts to write to the boot sector of the storage drive The options are Enabled and Disabled default 3 29 Themis Computer RES 12XR3 Installation Manual Configuration 7 Version 1 2 35 Boot Configuration Use this feature to configure boot settings BIOS SETUP UTILITY gt Boot Device Priority Figure 3 4 Boot Settings 3 9 1 Boot Device Priority This feature allows the user to specify the priority sequence of boot devices includ ing the 1st
40. Cards 2 7 Themis Computer RES 12XR3 Installation Manual Configuration 7 Version 1 2 Table 2 5 1RU Riser Cards Available for the X8DTU F Motherboard Riser Card Output Slots Riser Card Part Number XR3 Box UIO PCI E x8 PCI Ex16 PCI X RSC R1UU E16 i 1 e RES 22XR3 RSC R1UU 2E8 Al 2 e RES 22XR3 RSC R1UU AXE8 AE ARS 1 1 e RES 22XR3 RSC R2UU A4E8 Sea 4 e RES 22XR3 FIO RSC R2UU A3XE8 ee 1 3 e RES 22XR3 FIO Themis Custom e REP eens 29 e RES 22XR3 FIO e RES 11XR3 i i Z a 1 a RSC RR1U E16 da 2 8 a This list includes the most popular Riser Cards Call Themis Customer Service for a list of other Riser Cards that are available b Can t use top slot therefore 3 x8 c Can t use top slot therefore 2 PCI X d One x16 one x16 in x8 slot Retainer Bracket ______ _ _ Retainer Bracket Screws Universal I O UIO Right Riser Card PCI Express 2 0 x16 Note P N of Riser Card shown RSC R1UU UE16 Figure 2 6 PCI Riser Cards are attached to a Retainer Bracket Themis Computer 2 Installation and Operation Installation Procedures Retainer Bracket Figure 2 7 Then inserted into the PCI slots of the Motherboard 2 1 3 1 Installing Cards Right PCI Riser Card Perform the following steps to install a right hand PCI card 1 Locate the slot on the riser card see Figure 2 5 on page 2 7 within which a card will be in
41. EA support which will provide a common infrastructure for the system to handle hardware errors on Windows platforms in order to reduce system crashes due to hardware errors and to enhance system recovery and health monitoring The default setting is Enabled 3 3 11 IPMI Configuration Intelligent Platform Management Interface IPMI is a set of common interfaces that IT administrators can use to monitor system health and to manage the system as a whole For more information on the IPMI specifications please visit Intel s website at www intel com 3 3 11 1 IPMI Firmware Version This item displays the current IPMI Firmware Version 3 3 11 2 Status of BMC Working The Baseboard Management Controller B MC manages the interface between sys tem management software and platform hard ware This item displays the status of the current BMC controller Themis Computer 3 BIOS Setup Utility 3 3 12 Advanced Setup Configurations View BMC System Event Log This feature displays the BMC System Ev ent Log SEL It shows the total number of entries of BMC System Events To view an event select an Entry Number and pressing lt Enter gt to display the infor mation as shown in the screen Total Number of Entries SEL Entry Number e SEL Record ID e SEL Record Type Event Timestamp e Generator ID e Event Message Format User Event Sensor Type Event Sensor Number Event Dir Type e Event Data 3 3 12 1 Cle
42. ES 12XR3 Front Doors To access the removable storage drives you must first open the front doors see Fig ure 2 12 page 2 13 The knurled captive sc rew on the front of the RES 12XR3 allows the doors to lock without a key To unlock the front doors turn the screw counterclockwise and pull both bezel doors away from the chassis The accessory kit shipped with your RES 12XR3 contains two barrel lock keys This provides you the option of unlocking locking the storage drives Knurled Screw E M LL LTTITTTETTTTETT saeaesseueaenses gt OTTETIETIETEETLEELELEELRK pantauan set pa pi P n gt Figure 2 12 Opening the RES 12XR3 Front Doors A minn n P cian M Drive 1 Drive 2 Kiir 807 li e P Drive Release Kii Y Drive Lock one per drive Button Figure 2 13 Unlocking the RES 12XR3 Storage Drives Front Doors Removed 2 1 5 2 Storage Drive Removal After opening the front doors perform the following steps to remove and install a storage drive to turn off system power in order to remove and replace a drive except the oper ating system drive However after a warning has been broadcast to all users the drive being replaced should be dismounted before being removed Note Since RES 12XR3 storage drives are hot swappable it is not necessary Consult your operating system manual for specific details 2 13 Themis Computer RES 12XR3 Installation Manual Configuration 7 Version
43. Ethernet LAN Ports e Standard RJ45 connector to attach one or two gigabit Ethernet LAN line s LAN 1 and LAN 2 IPMI Dedicated Ethernet LAN Port e Standard RJ45 connector to attach a dedicated IPMI LAN line with full KVM support Unit Identifier UID Switch e A Unit Identifier Switch and two LED indicators are located on the motherboard When the UID switch is pressed both LEDs are turned on one LED is located at the rear edge of the motherboard the other LED is at the front of the motherboard Pressing the UID again turns off both LED indicators The UID indicators provide an easy identifi cation of a system unit that may be in need of service Note The UID can also be triggered via IPMI Themis Computer 1 Overview and Specifications 1 7 1 7 0 1 Chipset Overview Built upon the functionality and capabili ty of the Intel 5520 platform RES 12XR3 Configuration 7 provides the performanc e reguired for dual processor based high end systems including optimal configuration options for communications high end CAD systems or database applicati ons Configuration 7 supports up to two guad six core 5600 series or two quad core 5500 series intel 64 bit Xeon processors with a QPI up to 6 4 GT s The Intel chipset consists of e the Intel 5520 Tylersburg chipset and e the ICH OR IOH 36D With the Intel QuickPath Interconnect QP JI controller built in the processor the 5500 Series P
44. I BIOS Se tup Utility screen to enter the Exit BIOS Setup screen Save Champes awd Exit Figure 3 5 Exit Options 3 6 1 Save Changes and Exit When you have completed the system confi guration changes select this option to leave the BIOS Setup Utility and reboot the computer so the new system configura tion parameters can take ef fect Select Save Changes a nd Exit from the Exit menu and press lt Enter gt 3 6 2 Discard Changes and Exit Select this option to quit the BIOS Setup without making any permanent changes to the system configuration and reboot the computer Select Discard Changes and Exit from the Exit menu and press lt Enter gt 3 6 3 Discard Changes Select this option and press lt Enter gt to discard all the changes and return to the AMI BIOS Utility Program 3 32 Themis Computer 3 BIOS Setup Utility 3 6 4 3 6 5 Exit Options Load Optimal Defaults To set this feature select Load Optimal Defaults from the Exit menu a nd press lt Enter gt Then select OK to allow the AM I BIOS to automatically loa d Optimal Defaults to the BIOS Settings The Optimal settings are designed for maximum sys tem performance but may not work best for all computer applications Load Fail Safe Defaults To set this feature select Load Fail S afe Defaults from the Exit menu and press lt Enter gt The Fail Safe settings are desi gned for maximum system stability but not for maximum performance 3 3
45. Installation Step 3 Press Enter and you will see the Welcome screen Welcome screen does not prompt you for any input From this screen you can accessthe Release Notes for Red Hat Enterprise Linux 5 0 0 by clicking on the Release Notes button see Figure C 3 RED HAT ENTERPRISE LINUX 5 RED HAT ENTERPRISE LINUX 5 Owe notes Figure C 3 Welcome Screen Click on the Next button to continue Step 4 Using your mouse select a language to use forthe installation The lan guage you select here will become the default langua ge for the operating system once itisinstalled Selecting the appropr iate language also helps tar get your time zone configuration later in the installati on The installation program tries to define the appropriate time zone based on what you specify on this screen see Figure C 4 on page C 4 C 3 Themis Computer RES 12XR3 Installation Manual Configuration 7 Version 1 2 Qni tulpi a lis yuu Harv D E s T Siiner Me eiad bagage ter ie sys Engish USAI Additional Language e longus usa gt Support Soletti ark liimal languages ko ihalal ui bhe esteem nigh nA pom mme n E Engen gion Seas E zm otault language je do language will be the language aroun pred Korg Select Dated Dorey Used on the system once id installation is complete If you IO Engish wiam Reset choose to install other D Engish iniae talad languages itis possible to CI Enghtety i
46. MMs P2 DIMM1A P2 DIMM2A P2 DIMM3A 6 DIMMs P2 DIMM1A P2 DIMM1B P2 DIMM2A P2 DIMM2B P2 DIMM3A P2 DIMM3B Table 2 4 RES 12XR3 Optimal Memory Population CPU1 CPU2 Installed CPU 1 CPU 2 DIMMs Branch 0 Branch 1 Branch 2 Branch 0 Branch 1 Branch 2 6 DIMMs 1A 2A SA 1A 2A SA 12 DIMMs 1A 1B 2A 2B SA 3B 1A 1B 2A 2B SA 3B When installing memory follow these rules for best memory performance e It is strongly recommended that you do not mix memory modules of different speeds and sizes If DIMMs of different speeds have been installed verify that the BIOS setup is configured for the fastest speed of RAM used Themis Computer RES 12XR3 Installation Manual Configuration 7 Version 1 2 2 1 2 1 Installation The following procedure explains how to install the DDR3 FBD Memory Modules 1 Loosen and remove the seven screws securing the air flow deflector see Fig ure 2 2 Q TILILA PTEE a t v Figure 2 2 Remove RES 12XR3 Air Flow Deflector 2 After the air flow deflector is removed the memory modules will be exposed see Figure 1 4 on page 1 5 2 4 Themis Computer 2 Installation and Operation Installation Procedures The following procedure explains how to install the DDR3 FBD Memory Modules 1 rt EI r na taas LS sant pen A P2 DIMM 1B Branch 0 lt 3 P2 DIMM 1A P2 DIMM 2B Branch 1
47. Mounting Br ekets i idamaa manada tsikkel n 2 19 2 2 2 Rack Mount Slides Optional uissuesessonaaasonao tast aanas tana tas na e oeseovatat 2 19 DiS SOPCTAUION a250cc54Svanzaghacsdacsdotertacs kaalikas imed aadogheane E EE EA 2 20 2 3 1 Plugging in the AC Power Cords errenneeonneennnevaneennneonneeaenee 2 20 232 TUME The SV Stern Cisse Fes Set oat aes Patel lah ta St 8 chins eesti 2 20 2 3 3 Getting Started 24 sats cltsnenetesBetcaap band EREA EE E AOAN dana shk 2 21 233A ALO PUT ALLO sileesia al kalavarud 2 21 2B 2 Linux Installation suusunuaumammasuaamkaaumkasu 2 21 2 3 4 Turning the System OH Lisat dencandearutasnes ceadevantacnvneeaiedietocuaadane ceabovgsnaneoncedies 2 21 3 BIOS Setup lalt ys saastast eee O aaa meen EA 3 1 2 10 CHIME OG TONNG 5 a alamaa aa a 3 1 3 1 1 Starting BIOS Setup Utility viissser veale ina daa dann adedasatadeuda kavade via av 3 1 3 1 2 How To Change the Configuration Data tatee 3 2 3 1 3 Starting the Setup Utility tseesium Mekas ta 3 2 viii Themis Computer Table of Contents 3 2 Man BIOS Setpa aran aae A TT 3 3 3215 a System OVET Vie W dlete i aiad Saha E 3 3 3 2 1 1 System Time System Date sess 56 cocoate vas Seeaeeyetennvisvednsden tates 3 3 J2 k2 AMBIS iisen aaeain aa aaa E AEE 3 4 AA Ee E A O T AE E E 3 4 Seah System Memory urco teo laidu E N ER 3 4 3 3 Advanced Setup Configurations essssessesessssessessresresse
48. Order of Assembly F 4 Themis Computer Index Numerics 19 rack xxii IRU form factor 1 2 240 pin DIMM sockets 1 4 38 mm fan housing 2 48 bit LBA mode 3 5 A AC power cord 1 17 2 20 power LED 2 2 power loss recovery 1 6 power socket 2 20 power supply 1 4 accessory kit 7 17 ACPI 12 7 ACPI Configuration ACPI APIC Support 3 23 ACPI Aware O S 3 23 ACPI Version Features 3 24 APIC ACPI SCI IRQ 3 24 Headless Mode 3 24 High Performance Event Timer 3 23 NUMA Support 3 24 WHEA Support 3 24 Advanced Chipset Control 3 10 BIOS EHCI Hand Off 3 4 CPU Bridge Configuration 3 10 Demand Scrubbing 3 11 Intel VT d 3 12 Memory Frequency 3 11 Memory Mode 3 11 NorthBridge Configuration 3 12 Active State Power Management 3 12 DCA Prefetch Delay 3 2 DCA Technology 3 2 Intel OAT 3 12 Intel VT d 3 12 IOH PCI E Max Payload Size 3 13 Slot SXB1 Width 3 13 Slot SXB2 SXB3 Width 3 12 Patrol Scrubbing 3 11 QPI Frequency 3 0 QPI LOs and L1 3 17 QPI Links Speed 3 10 Request Transaction ID 3 10 SouthBridge Configuration 3 13 BIOS EHCI Hand Off 3 14 Legacy USB Support 3 13 Port 60h 64h Emulation 3 13 Route Port 80h Cycle to 3 14 USB 2 0 Controller 3 13 USB 2 0 Controller Mode 3 13 USB Functions 3 13 Throttling Closed Loop Throttling Open Loop 3 11 AMI BIOS 3 1 antistatic bags 2 1 antistatic wrist strap 2 1 Approximate Weights of the RES Series 7 18 ATA 133 IDE Controller card 3 15 audio connectors D 3 Audio USB Se
49. QPI Links Speed This feature selects QPI s data transfer speed th e option are Slow mode and Full Speed default QPI Frequency This selects the desired QPI frequency The options are Auto default 4 800 GT 5 866GT 6 400 GT Themis Computer 3 BIOS Setup Utility Advanced Setup Configurations 3 3 4 5 QPI LOs and L1 This enables the QPI power state to low power LOs and L1 are automatic ally selected by the motherboards The options are Disabled default and Enabled 3 3 4 6 Memory Frequency This feature forces a DDR3 frequ ency slower than what the system has detected The available options are Auto default Force DDR 800 Force DDR 1066 and Force DDR 1333 3 3 4 7 Memory Mode The options are Independent default Channel Mirror Lockstep and Sparing Independent All DIMMs are available to the operating system Channel Mirror The motherboard maintains two identical copies of all data in memory for redundancy Lockstep The motherboard uses two areas of memory to run the same set of operations in parallel Sparing A preset threshold of correctable er rors is used to trigger fail over The spare memory is put online and us ed as active memory in place of the failed mem ory 3 3 4 8 Demand Scrubbing A memory error correction scheme where the Processor writes corrected data back into the memory block from where it was read by the Processor The options are Enabled and Disabled default 3 3
50. R3 Installation Manual Configuration 7 Version 1 2 2 22 Themis Computer Installation Section Chapter BIOS Setup Utility 3 1 Introduction Note The information on this chapter is based on the Super Micro Computer Inc User Manuals for the specific motherboard installed in the system This chapter describes the AMI BIOS Setup Utility for the X8DTU F motherboard The AMI ROM BIOS is stored in a Flash EEPROM and can be easily updated This chapter explains the basic navigation of the AMI BIOS Setup Utility setup screens 3 1 1 Starting BIOS Setup Utility To view the AMI BIOS Setup Utility screens press the lt Delete gt key while the sys tem is booting up screen There are a couple of cases when other keys are used including lt F 1 gt d Note In most cases the lt Delete gt key is employed to view the AMI BIOS setup lt F2 gt etc 2 1 Themis Computer RES 12XR3 Installation Manual Configuration 7 Version 1 2 3 1 2 3 1 3 Each main BIOS menu option is explained in this manual The Main BIOS setup menu screen has two main frames The left frame displays all the options that can be configured Grayed out options cannot be configured Options in blue can be config ured by the user The right frame displays the key legend Above the key legend is an area reserved for a text message When an opt ion is selected in the left frame it is highlighted in white Often a text message will ac
51. SB1 DP To J10 Pin 5 USB2 GND To J10 Pin 8 A4 B4 USB1 GND To J10 Pin 7 Figure E 4 Dual USB Connector Pinouts Table E 1 Dual USB Connector Pinout Signal Descriptions J10 Pin Signal Name Pin Signal Name 1 5V 2 5V 3 DM Data Minus 4 DM Data Minus 5 DP Data Plus 6 DP Data Plus 7 Ground 8 Ground 9 Cut Off for Keying 10 No Connection E 4 Themis Computer E Optional RES Audio USB Serial Port Module RES Audio USB Serial Port Custom Module E 1 2 2 Serial Port COM1 The RES Custom Module supports one male DB9 serial port connector J9 on the front I O panel see Figure E 5 COM1 The COM1 pinout is listed in Figure E 5 pinout signal descriptions are described in Table E 2 which also shows the serial header J8 connections to serial port J9 Serial Port COM1 1 5 ere 6 9 J8 Header Figure E 5 COM1 Serial Connector Pinout Table E 2 COM1 Serial Connector Pinout Signal Descriptions J8 and J9 J8 Signal Connected J8 Signal Connected J8 Signal Connected Pin Name to J9 Pin Pin Name to J9 Pin Pin Name to J9 Pin 1 DCD 1 4 RTS 7 7 DTR 4 2 DSR 6 5 TXD 3 8 RI 9 3 RXD 2 6 CTS 8 9 GND 5 Themis Computer E 5 RES12XR3 Installation Manual Configuration 7 Version 1 2 E 1 2 3 Stereo Audio Ports Optional The RES Custom Module supports one optional Stereo Audio Out jack o
52. U board and does not nec essarily depict specific system configurations 1 3 Themis Computer RES 12XR3 Installation Manual Configuration 7 Version 1 2 The RES 12XR3 front panel houses three removable SATA II storage drives S tor age drive reguirements should be ordered at the time of purchase Also included on the front panel is a combination CD R W DVD ROM Slimline drive a n ON OFF power button and system LEDs see Figure 1 5 on page 1 9 The rear panel con tains I O faceplates for three PCI cards graphics RAID NIC etc two AC power supplies with latch locks and power cord sockets and all I O connectors Figure 1 5 on page 1 9 Major internal components can be seen in the open top view of Figure 1 4 page 1 5 Table 1 2 Major Features of RES 12XR3 Configuration 7 Feature Details e Two 1366 pin Intel Quad Core 5500 Series or Quad Six Core 5600 Series Plocessor Gny Xeon CPUs up to 6 4 GT s each Chipset e Intel 5520 Tylersburg chipset e ICH10R IOH 36D e Twelve 12 240 pin DIMMs supporting up to 192 GB 16GB DIMMs of Reg Memory istered ECC DDR3 1333 1066 800 MHz 72 bit SDRAM Expansion slots e See Table 1 1 on page 1 2 for details Rear Panel I O e See Table 1 5 on page 1 12 for details Peripheral Support e Three SATA II storage drives e 1 combination CD RW DVD ROM slimline IDE drive Operating temperature e 0 up to 65 C 32 up to 149 F Shock en
53. WPCM450 Controller is a Baseboard management Controller BMC that supports the 2D VGA compatible Graphics Core with the PCI interface Virtual media and keyboard Video Mouse Redirection KVMR modules With blade ori ented Super I O capability built in the WP CM450 Controller is ideal for legacy reduced server platforms The WPCM450 interfaces with the host syst em via a PCI interface to communicate with the Graphics core It supports USB 2 0 and 1 1 for remote keyboard mouse vir tual media emulation It also provides LPC interface to control Super I O functions The WPCM450 is connected to the network via n external Ethernet PHY module The WPCM450 communicates with onboard components via six SMBus interfaces fan control and Platform Environment Control Interface PECI buses Note For more information on IPMI configuation please refer to the Embedded IPMI User s Guide posted http www supermicro com support manuals 1 6 1 8 System LEDs and I O Connectors All RES 12XR3 system L EDs are located on the front panel see A Figure 1 5 page 1 9 all I O connectors are located on the rear panel see B Figure 1 5 LEDs are described in Table 1 4 on page 1 11 I O connectors are described in Table 1 5 page 1 12 Themis Computer 1 Overview and Specifications System LEDs and I O Connectors A Front Panel Doors Removed pot te A ENET1 ENET2 Z Le lt gt Storage Power Power NIC1 NIC
54. Yes 1 2 a SuperMicro Computer Inc 20 50 8 cm deep h N Latch Lock 1 2 AC Power Socket 3 prong NEMA 15 The RES 12XR3 is designed within a IR U high 1 75 form factor 20 50 8 cm deep and 17 43 2 cm wide which with mounting brackets fits a 19 wide rack see Figure 1 2 Major features of the RES 12XR3 are described in Table 1 2 page 1 4 Dual Power Supplies dean at ie Power Supply r CD RW DVD ROM Combo Slimline Drive Front View Doors Removed td 17 42 7 cm 19 with Rack Mounts Not Used Rear View ee LL A MT Rear I O Panel see Figure 1 5 page 1 10 Storage Drive SATA Il Total of 3 Front LED Indicator Panel see Figure 1 5 page 1 10 Upper Right PCI Slot Right Riser Lower Right PCI Slot Right Riser System Power ON OFF Switch 1 75 1RU as viewed from rear of system Figure 1 2 External Features of the RES 12XR3 X8DTU F Motherboard Themis Computer 1 Overview and Specifications Overview QPI Processor 0 S 4 Processor 1 Gen 2 0 x16 Lane Reversal Gen 2 0 x8 Gen 2 0x8 p Ea ind E RJ45 RJ45 SST 25VF016 Gen 2 0 x8 Lane Reversal In x4 Slot PCI E Ports 1 6 Intel ICH10R Figure 1 3 X8DTU F Motherboard Block Diagram a This represents a general block diagram of the X8DT
55. Z On Power Fail LED e AC power has been e red LED Left or Right Power Supply interrupted to both power SF supply modules When Note system is powered off power is restored but sys Or tem is still off one of the J two indicator lights will be lit rg Rear On Green LED e System is receiving Power Supply green adjacent to AC input DC power 3 3V 5V Modules LED 12V from the power sup Note system is powered on ply module off Green LED e System is off and not adjacent to AC input Note system is powered off receiving DC power from the Power Supply mod ule a This LED behavior indicates only that AC power has interrupted to both power supplies and does not indicate which power supply module lost power first or regained power first b This LED behavior indicates that DC power is not being used and the system is off It does not indicate a loss of AC power to the power supply module Themis Computer 1 Overview and Specifications System LEDs and I O Connectors Table 1 4 System LEDs LED Description Power e Indicates that the system is turned on Storage Drive e Indicates SAS SATA II storage drive activity NIC1 Gb Ethernet e Indicates network activity on LAN 1 Els NIC2 Gb Ethernet e Indicates network activity on LAN 2 SE Overheat Fan Fail Normally OFF RED light when tem perature limits are ex ceeded e Warns
56. a generic system event mechanism for Plug and Play and an operating system independent interface for configuration c ontrol Plug and Play BIOS data structures are lever aged while the implementation is processor architecture independent and compati ble with both Windows 2003 and Windows 2008 Operating Systems Slow Blinking LED for Suspend State Indicator When the CPU enters a suspend state the Power LED will start blinking to indicate that the CPU is in suspend mode Pressing any key on the keyboard will awaken the CPU at which time the power LED will stop blinking and remain on Themis Computer RES 12XR3 Installation Manual Configuration 7 Version 1 2 1 5 1 5 1 J Super I O The Super I O supports two high spee 4 16550 compatible serial communication ports UARTs Each UART includes a 16 byte send receive FIFO a programmable baud rate generator complete modem c ontrol capability and a processor interrupt system Both UARTs provide legacy spee d with baud rate of up to 1 15 2 Kbps as well as an advanced speed with baud ra tes of 250 K 500 K or 1 Mb s which sup port higher speed modems The Super I O provides functions that comply with AC PI Advanced Configuration and Power Interface which includes suppor t of legacy and ACPI power manage ment through an SMI or SCI function pin It also features auto power management to reduce power consumption Overview of the Winbond WPCM450 Controller The Winbond
57. a i E Right Mounting Bracket Right Handle Figure 2 18 Right Rack Mount Bracket 2 2 2 Rack Mount Slides Optional Rack Mount Slides can be mounted on each side of the RES 12XR3 for the purpose of sliding the unit in and out of a rack Mounting slides are optional and should be ordered at the time your system is purchased To learn how to install rack mount slides refer to A ppendix B Rack Mount Slide Installation Caution Any screws used to mount a slide to a RES 12XR3 chassis must not ex ceed a length of 6mm to prevent excessive penetration of the chassis Themis Computer RES 12XR3 Installation Manual Configuration 7 Version 1 2 2 3 Operation 2 3 1 Plugging in the AC Power Cords Before powering on the RES 12XR3 plug in the AC power cords as follows 1 On the rear of the RES 12XR3 plug an AC power cord shipped with unit into the AC power socket on each power supply see Figure 2 19 Locking Lever AC Power Socket System Power LED oo Figure 2 19 AC Power Socket and LED on the RES 12XR3 Rear 2 3 2 Turning the System On 1 Plug the AC power cord from each of the RES 12XR3 power supplies into a live AC outlet 2 On the front of the RES 12XR3 pushthe system power on off button see Fig ure 2 20 This will cause the system POWER LED to light green as well as the rear power supply module LED to light green Power LED M System Power On Off Button Fi
58. ackaging instructions found in this appendix Themis has qualified all of its shipping materials to meet the highest of standards and the rigors of today s shipping methods thus insuring total protection of your product during delivery Failure to use original packaging materials ex actly as described in this appendix may invali date the warranty If the original packaging is no longer serviceable or no longer available please contact Themis Cust omer Support for a new shipping box to send back your RES 12XR3 Caution Failure to use the original Themis packaging materials and failure to fol low the instructions of this Appendix F may invalidate the warranty The following instruction assume the original packaging components are still avail able and in serviceable condition If not please contact Themis for a new shipping box and packaging components for your RES 12XR3 Themis Computer RES 12XR3 Installation Manual Configuration 7 Version 1 2 F 2 Packaging Components The original packaging components are shown in Figure F 1 They comprise a pack aging box bottom foam layer and two top foam layers The two top foam layers are identical components placed so that the rear most edge and from most edge touch the inner wall of the bottom foam layer This will leave a small horizontal gap in the middle in which accessories will be placed i e power cables ae Rear Foam Layer Front Foam Layer Shippi
59. and left outside slide sections install both sections to the inside right and inside left of a 19 rack with two bolts per bracket making sure there is ad equate room for the IRU height 1 75 of a RES 12XR3 system 5 Carefully insert the RES 12XR3 system into the 19 rack so that the inside slides on both sides of the chassis travelsmoothly into the channels of the out side slide sections Push the system into the rack until the mounting brackets on the front of the chassis are flush with the front of the rack 6 Secure the RES 12XR3 system to the 19 rack with two bolts on each side B 2 Themis Computer B Rack Mount Slide Installation 250 6 202 4 424 9 24 9 A Side View of the RES 12XR3 Slide Installation Note All Dimensions are given in millimeters mm measured from the 0 B RES 12XR3 Rack Mount Slide Installation Outside slide section Front S 3 Attach the rear long slide bracket i ag to the outside slide section with screws ke TT t M4x1 Omm washers and nuts included Sm i a in slide kit g go 2 Attach the front short slide bracket to the outside slide section with screws M4x10mm washers and nuts included in slide kit 1 Attach both inside slide sections to the left and right sides of the RES 12XR3 chassis with M4x6mm screws included in slide kit Figure B 2 RES 12XR3 Rack Mount Slide Installation B 3 Themis Computer RES1
60. ar BMC System Event Log Clear BMC System Log Select OK and press the lt Enter gt key to clear the BMC system log Select Cancel to keep the BMC System log The options are OK default and Cancel A Caution Any cleared information is unrecoverable Make absolutely sure that you no longer need any data stored in the log before clearing the BMC Event Log Themis Computer RES 12XR3 Installation Manual Configuration 7 Version 1 2 3 3 13 Set LAN Configuration Set this feature to configure the IPMI LAN adapter with a network address as shown in the following graphics Channel Number Enter the channel number for the SET LAN Config command This is initially set to 1 default Press or on your keyboard to change the Channel Number Channel Number Status This feature returns the channel status for the Channel Number selected above Channel Number is OK or Wrong Channel Number IP Address Source This features allows the user to select how an IP address is assigned to a client com puter or network device Select DHCP Dynamic Host Configuration Protocol to allow a client computer or device obtains an IP address from a DHCP server that manages a pool of IP addres ses and network information on a request and grant basis Upon time out or leas e expiration the IP address assigned to the client can be reassigned to a new client Select Static Static Allocation default to a
61. atus Monitor tsink iis tit Nadie aa Tava tu a 1 6 1 3 2 Environmental Temperature Control mwteennaesenoonneonanennao enne onne 1 6 13 23 System R so rceAl tt aka n ie a E a a 1 7 1 44 ACPI 6atures mistahes s elale chelated eed a a a a e a n taiea 1 7 1 4 1 Slow Blinking LED for Suspend State Indicator mmes 1 7 Vides S per VO sales sur seeds Sant A A RA TD OA E ED ENN AL 1 8 1 5 1 Overview of the Winbond WPCM450 Controller weee 1 8 1 6 System LEDs and I O Connectors revreovanoneneonneonaneo nae ete onneonanenene one nene 1 8 1 7 Chipset Ov rviewW A MAS 1 13 1 7 0 1 Main Features of the 5500 Series Processor and 59520 Chipset saaki ad 1 13 1 8 Specifications Kaka aaa a a a 1 14 FRAL General ma iena attested E A A ahaa leach ein Tas 1 14 18 2 Blectricall 2 26 anA N a E IA T sande E 1 15 1 8 201 gt System POWGE taala EE E ER 1 15 1 8 2 2 Output Voltage eron kaetav atika ails 1 16 1 8 3 Environmental iiiiseeeeeeeeeeaeaeaea aaa Aa AA EEA ASEE E aan aA 1 16 Reo 2 PECS 0100 APE E EEEN E E OEE A a EA 1 16 1 8 3 2 Electrostatic Discharge nud sl ihkavad aasa 1 16 1 8 3 3 NOISE 13 ea Gites pence te dodsein dered ha Sat lt SA 1 16 1 9 Packaging and SMppihg asualal aaa liisa aaa 1 17 LOT Accessory Kilter Maala A ila 1 17 Themis Computer vii RES 12XR3 Installation Manual Configuration 7 Version 1 2 1 9
62. audio USB and serial port capabilities to the front of any RES system can easily order an optional RES Audio USB Serial Port Custom Module see Figure E 1 that is installed at the Themis factory into an available stor age drive bay see following Caution Custom Module Ss Custom Module PCB I O Connectors Figure E 1 RES Audio USB Serial Port Custom Module E 1 Themis Computer RES12XR3 Installation Manual Configuration 7 Version 1 2 Module to the RES motherboard the RES Custom Module must be installed at the Themis factory before being shipped to the customer Do not attempt to remove the RES Custom Module from its drive slot unkss you have some hardware experience see the following paragraph Figure E 2 and Figure E 3 on page E 3 Caution Because connections must be made internally from the RES Custom The RES Audio USB Serial Port Custom Module is inst alled after first removing one of the existing RES storage drives any one except the boot drive then connect ing the appropriate I O cables from the RES Audio USB Serial Port Custom Module to the external devices After the sto rage drive has been removed from the system cables from the internal RES motherboard are fed through the open drive slot and attached to the I O headers on the to p surface of the Custom Module PCB and the Module is inserted into the vacant drive slot see Figure E 2 Note that a RES 32XR3 FIO is shown in this Appendix alth
63. boot device 2nd boot device et c The options are Removable Devices Storage Drive CD DVD USB Network and Disabled e Ist Boot Device e 2nd Boot Device 3 5 2 Storage Drives This feature allows the user to s pecify the boot sequence from all available storage drives The settings are Disabled and a list of all storage drives that have been detected 1 e 1st Drive 2nd Drive 3rd Drive etc e Ist Drive 3 30 Themis Computer 3 BIOS Setup Utility 3 5 3 3 5 4 3 5 5 3 5 6 Boot Configuration Removable Drives This feature allows the user to specify the boot sequence from available Removable Drives The settings are 1st boot device 2nd boot device and Disabled e Ist Drive 2nd Drive CD DVD Drives This feature allows the us er to specify the boot sequence from available CD DVD Drives i e Ist Drive 2nd Drive etc e Ist Drive 2nd Drive USB Drives This feature allows the user to specify the boot sequence from available USB Drives Network Drives This feature allows the us er to specify the boot sequence from available Network Drives Retry Boot Devices If this feature is enabled the system will continue to search for the next boot device if the current boot device is not av ailable The options are Enabled and Disabled default 3 31 Themis Computer RES 12XR3 Installation Manual Configuration 7 Version 1 2 3 6 Exit Options Select the Exit tab from the AM
64. ccessfully Themis Computer RES 12XR3 Installation Manual Configuration 7 Version 1 2 Hinged Fan Lid Locking Stud 1 of 3 38 mm Fan y w et I Fan Lock os nmn E Fan Lid Lock Figure 2 15 The RES 12XR3 Hot Swappable 38 mm Fans Fan Lock Push the Lock Toward the Front 38 mm Fan Pull Up the Fan Away from Chassis 3 Wire Connector Figure 2 16 Removing One of the Five RES 12XR3 38 mm Fans 2 16 Themis Computer 2 Installation and Operation Installation Procedures 2 1 7 Power Supply Each load sharing N 1 redundant power supply can be hot swapped while the sys tem is still on and operational 2 1 7 1 Removing a Power Supply Perform the following steps to remove a power supply 1 Loosen the two screws holding the power supply locking bracket to the chas sis see A Figure 2 17 Place the bracket in a safe place for further use 2 Put the right index finger on the power supply extraction handle and the right thumb on the left side of thepower supply locking lever seeB Figure 2 17 A Remove power supply locking bracket A ae aN Knurled captive Phillips screw 5 Vi PN e P aS Knurled captive Phillips screw i Power supply locking bracket TV B then push locking lever to the right and remove power supply Phillips Screw Hole e Push lever to the right to release power supply System Power LED for knurled captive screw Power S
65. ckaging components E 2 Repackaging for Shipment E Repackaging Instructions E RES Audio USB Serial Port Custom Module D 1 RES weights 1 18 RES 12XR3 xvii RES 12XR3 Configuration 7 1 1 Index 6 RES x2XR3 20 Deep Manual Matrix xviii RES x2XR3S RES x1XR3 17 Deep Manual Matrix xix Right PCI Riser Card 2 9 Lower right PCI Slot 2 7 Upper right PCI Slot 2 7 S Safety Instructions iv Electrostatic Discharge ESD v Grounding Methods v Instructions for the Lithium Battery vi Operation of Laser Source Devices v SATA AHCI 3 15 SATA mode 3 14 SATA RAID Adaptec 3 14 SATA RAID Intel 3 14 screw locations for rack mount slides B Security Settings screen 3 28 Serial ATA Advanced Host Interface 3 14 Serial Port D 3 Serial Port COM1 D 5 serial ports A 2 D 5 Set LAN Configuration Channel Number 3 26 Channel Number Status 3 26 Gateway Address 3 27 IP Address 3 26 IP Address Source 3 26 Mac Address 3 27 Subnet Mask 3 26 Shock 7 16 shock xxii Shock endurance 1 4 Sidebars xxiii slides rack mount xxii slimline drive 1 4 Specifications Altitude 1 14 BTU Rating 1 15 Dimensions 1 14 Electrostatic Discharge 1 16 Themis Computer Index Input Current 1 15 Input Frequency 1 15 Input Leakage 1 15 Input Power 5 Input VA Rating 1 15 Input Voltage 1 15 Maximum Wet Bulb 17 14 Noise Level 1 16 Packaging and Shipping 1 17 Plug Type 1 15 Power Factor 1 15 Relative Humidity 4 Shock 1 16 Temperature 1 14 Weight 1 14
66. company it Note The AMI BIOS has default text messag es built in Themis has the option to include omit or alter any of these text messages The AMI BIOS Setup Utility employs a key based navi gation system called hot keys Most of the AMI BIOS setup utility hot keys can be employed at any time during the setup navigation process Thes e keys include lt F1 gt lt F10 gt lt Enter gt lt ESC gt arrow keys etc Note Options printed in Bold are default settings How To Change the Configuration Data The configuration data that determines the system pa rameters may be altered by entering the AMI BIOS Setup utility This Setup utility can be accessed by pressing lt Del gt at the appropriate time during system boot Starting the Setup Utility Normally the only visible Power On Self Test POST routine is the memory test While the memory is being tested press the lt Delete gt key to enter the main menu of the AMI BIOS Setup Utility From the main menu you can access the other setup screens An AMI BIOS identification string is displayed at the left bottom corner of the screen below the copyright message Caution Do not upgrade the BIOS unless your system has a BIOS related issue Flashing the wrong BIOS can cause irreversible damage to the system In no event shall Themis be liable for drect indirect special incidental or consequential dam ages arising from a BIOS update If you hae to update the BIOS
67. d in Step 1 on page 2 9 PCI Cards Since the RES 12XR3 is only 1RU 1 75 high PCI cards must be installed hori zontally through one of the two PCI Riser Cards see Figure 2 5 on page 2 7 Themis Computer 2 Installation and Operation Installation Procedures Configurations include e Slot J1 SXB2 1 PCI Express 2 0 x8 left PCI slot on left Riser Card slot is not used call Themis Customer Service for further information e Slot J2 SXB1 1 PCI Express 2 0 x16 upper right PCI slot right Riser e Slot J3 SXB3 1 PCI Express 2 0 x8 in x4 slot lower right PCI slot The upper right PCI slot supports cards up to 12 28 inches long the lower right PCI slot supports shorter cards due to space constraints from the CPU and related heat sink the left PCI slotis not usable A list of r ecommended PCI Riser Cards is shown in Table 2 5 page 2 8 PCI Riser Cards that are installed on the RES 12XR3 motherboard depend on the type of PCI card that will be supported aie 10 PCI E 2 0 x8 slot upper right Right Riser Card SXB2 J1 PCI E 2 0 x8 not used PCI E 2 0 x8 lower right Reverse view of right riser card SXB1 J2 PCI E 2 0 x16 PCI Riser Card Retainer Bracket installed on right riser card SXB3 J3 j PCI E 2 0 x8 i in x4 slot Top View z A 4 A B PCI Slots on Motherboard Retainer Bracket with Right Riser Card Left not used Figure 2 5 Positioning of the RES 12XR3 PCI UIO Riser
68. debar A sidebar adds detail to the section within which it is placed but is not absolutely vital to the description or procedure of the section Themis Computer RES 12XR3 Installation Manual Configuration 7 Version 1 2 xxiv Themis Computer General Section Chapter Overview and Specifications 1 1 Overview The RES 12XR3 Configuration 7 see Figure 1 1 below a block diagram is given in Figure 1 3 page 1 3 is a rack mounted hi gh performance system designed spe cifically for above average shock and vibration environments The RES 12XR3 sup ports two Intel 1366 pin LGA 64 bit 5500 5600 Series Xeon processors each with a QPI Ouick Path In terconnect up to 6 4 GT s Giga Transfers per Second supporting 192 GB of 1333 1066 800 MHz DDR3 ECC Re gistered memory mod ules Its computer graphics intensive and diverse I O capabilities are ideal for mili tary aerospace and commer cial telecommunications applications Motherboard options supported by Configuration 7 are listed in Table 1 1 on page 1 2 Figure 1 1 RES 12XR3 with Front Doors installed 1 1 Themis Computer RES 12XR3 Installation Manual Configuration 7 Version 1 2 Table 1 1 RES 12XR3 Motherboard Options Configuration 7 Mother Memory PCl e PCI X and PCI or UIO Slots Board IPMI SATA SAS Slots Graphics Audio PCI e PCI e PCl e PCI X UIO x16 x8 x4 X8DTU F Yes Yes 12
69. der or if your BIOS does not re turn the correct drive orde r Changing the drive order may be useful if you have multiple SCSI adapters or both SCSI and IDE adapters and you want to boot from the SCSI device Click Next Themis Computer RES 12XR3 Installation Manual Configuration 7 Version 1 2 Step 12 The installation program automatica lly detects any ne twork devices you have and displays them in the Network Devices list see Figure C 12 RED HAT ENTERPRISE LINUX 5 Network Devices Active on Boot Device 1Pv Netmask IPv Prefix Edit Hostname Set the hostname automatically via DHCP 3 manually rmetS tocatdomain e g host domain com Miscellaneous Settings B Retease Notes Back gt Next Figure C 12 Network Devices List Step 13 Once you have selected a network device click Edit From the Edit Inter face pop up screen you can choos e to configure the IP address and Netmask for IPv4 Prefix for IPv6 of the device via DHCP or manually if DHCP is not selected and you can choose to activate the device at boot time If you select Activate on boot your network interface is started when you boot see Figure C 13 on page C 13 If you do not haveDHCP client access or you are unsure what to provide here please contact your network administrator C 12 Themis Computer C Red Hat Enterprise Linux 5 Installation Installation Configure eth0 Advanced Micro Devices AMD
70. durance e 35G 25 msec duration 3 axis Dimensions e 1 75 1RU high 17 43 2 cm wide 19 48 3 cm with mounting brackets 20 50 8 cm deep Rack mount brackets e Left and right rack mount tabs are attached to the chassis and slides e Left and right rack mount slides are optional e 750 watts each auto ranging 100 265 Vac e Load sharing N 1 redundant hot pluggable e Optional Choice of 750 watt 48V or 450 500 watt 28V DC Power supply Dual power supplies 1 4 Themis Computer 1 Overview and Specifications Right Riser Card GPU 2 PCI Express Card Upper Right Slot i ina thle t ar So 6 DIMM Memory Modules CPU 1 7 4 i eup ii 0 t Lithium Battery underneath wires F MT Overview Left AC Power Supply Right 6 DIMM Memory AC Power Supply Modules CPU 2 1 e il s eer a ATT ou n G Aea KON CPU 1 ah E SC ti 38 mm Fan ar TITIL Five Total Storage Drive Total of 3 Front CD DVD Combo Drive Housing Figure 1 4 Open Top View of the RES 12XR3 Air Flow Diverter Removed 1 5 Themis Computer RES 12XR3 Installation Manual Configuration 7 Version 1 2 1 2 1 2 1 Special Features Recovery from AC Power Loss The BIOS setup can be configured to allow the system whenever AC power is lost e to remain off power switch must b
71. e 3 15 Primary IDE Master Slave 3 15 SATA 1 Configuration 3 14 Configure SATAFI as 3 14 ICH RAID Code Base 3 4 SATA AHCI 3 14 SATA 2 Configuration 3 15 Secondary IDE Master Slave 3 15 Third IDE Master 3 5 Installation procedures 2 installing rack mount slides B memory modules 2 4 Optimal Memory Population 2 3 PCI cards 2 9 Instructions for Repackaging E 3 Intel 5500 Series xxii Intel 5520 Tylersburg chipset xxii Intel 5600 Series xxii IPMI Configuration IPMI Firmware Version 3 24 Status of BMC Working 3 24 K keys front bezel 7 17 L LAN port A 3 latch locks 1 4 Index 4 LEDs 1 8 NIC Gb Ethernet 7 11 SAS SATA storage drives 7 11 system 1 4 Linux 5 Installation C Linux Installation 2 27 Creating a Custom Layout C 9 Edit Interface Pop Up Screen C 13 Enter Installation Number C 6 Installation Begins C 8 Installation is Complete C 19 Language Selection C 4 Login Screen C 20 Master Boot Record MBR C 11 Network Devices List C 2 Option to Review or Continue C 8 Optional Packages C 17 Package Installation Default Screen C 6 Partitioning C 7 Power On C 2 Ready to use the Desktop C 20 Reviewing Option C 8 Selecting Layout Type C 5 Selecting Time Zone C 4 Setting Up Boot Loader C 10 Setting Up Root Account and Password C 15 Skip Key C 2 Welcome Screen C 3 Linux Installation Guide C lithium battery 2 installation 2 12 lithium battery and socket illustration of 2 11 2 12 removal 2 11 Logical B
72. e 3 11 1 MB s 4 PIO Mode 4 16 6 MB s DMA Mode Select Auto to allow the BIOS to automatically detect IDE DMA mod e when the IDE storage device support cannot be determined The opt ions are Auto defa ult SWDMAn MWDMAn and UDMAn See Table 3 2 below for DMA Mode Select Options Table 3 2 DMA Mode Select Options Option Selected DMA Mode Max Transfer Rate SWDMA 0 Single Word DMA 0 2 1 MB s SWDMA 1 Single Word DMA 1 4 2 MB s SWDMA 2 Single Word DMA 2 8 3 MB s MWDMA 0 Multi Word DMA 0 4 2 MB s MWDMA 1 Multi Word DMA 1 13 3 MB s MWDMA 2 Multi Word DMA 2 16 6 MB s Themis Computer 3 BIOS Setup Utility Advanced Setup Configurations Table 3 2 DMA Mode Select Options Continued Option Selected DMA Mode Max Transfer Rate UDMA 0 Ultra DMA 0 16 6 MB s UDMA 1 Ultra DMA 1 25 MB s UDMA 2 Ultra DMA 2 33 3 MB s UDMA 3 Ultra DMA 3 44 4 MB s UDMA 4 Ultra DMA 4 66 6 MB s UDMA 5 Ultra DMA 5 100 MB s UDMA 6 Ultra DMA 6 133 MB s 3 3 6 3 3 6 1 3 3 6 2 S M A R T For Storage Drives Self Monitoring Analysis and Reporting Technology SMART can help predict impending drive failures Select Auto to allow the AMI BIOS to automa tically detect storage drive support Select Disabled to prevent the AMI BIOS from using S M A R T Select Enabled to allow the AMI BIOS to use S M A R T to support the storage drives The options are Disabled Enabled and
73. e C 13 Edit Interface Pop Up Screen sca bencsudcanesiciesd cadutighavsachiaeleeahamiectadehduccsabneie C 13 Themis Computer Version 1 2 Table of Contents Figure C 14 Selecting Time 7 ONG 104914108 aka ela aS a Saal A C 14 Figure C 15 Setting Up Root Account and Password C 15 Figure C 16 Package Installation Default Screen mtetemteneeneeneeneenneet C 16 Figure C 17 Optional Packages ecu ce Ni 85 os caaccec cate hs Madea site kaal ies a atic C 17 Figure C 18 Option to Review or Continue cccecccccceseceseeeesceesceceaeceeeeeseesseecsseeneeeeaes C 18 Figure C 19 Installation Begins 4 isiccsaes te stasca Maio tavas akkadi tud lakata tuldi ances C 18 Figure C 20 Installation is Complete ccccccsscsssecssssscssccesceseccssscssenseecessacsenneseacesacss C 19 Fi u re 45 21 Login Serena lis Bal ae tet a C 20 Figure C 22 Ready to use th DesKtopL 4145 2sansvti ansi lesele v ka eee ee eae C 20 Figure D 1 Remote On Off Switch Module ccc ccccccccssecsssceceseeeceseeecssececsseeeesseeeeaes D 1 Figure E 1 RES Audio USB Serial Port Custom Module D 1 Figure E 2 Install the RES Audio USB Serial Port Custom Module D 2 Figure E 3 Attach the Appropriate I O Cables itieteenereenneeenneeneeneneennee et D 3 Figure E 4 Dual USB Connector Pinouts sreeneeeenneneenneenenaeenennenenne enama D 4 Figure E 5 COMI Serial Con
74. e pressed to turn system back on or e return to a power on state automatically when power is restored The system default is Last State 1 3 1 6 1 3 1 1 3 2 PC Health Monitoring The following sections describe the PC health monitoring features of the X8DTU F All have an onboard System Hardware Moni tor chip that supports PC health moni toring An onboard voltage monitor will scan these onboard voltages continuously CPU cores 1 8V 3 3V 5V 12V 3 3V Standby 5V Standby VBAT Mem ory Chipset Voltages Once a voltage beco mes unstable a warning is given or an error message is sent to the screen Users can adjust the voltage thresholds to define the sensitivity of the voltage monitor Fan Status Monitor The RES 12XR3 has five 38 mm cooling fans and one within each power supply The PC health monitor utility can be used to check the RPM status of cooling fans The onboard CPU and chassis fans arec _ ontrolled by Thermal Management via BIOS Environmental Temperature Control The thermal control sensor monitors CPU temperature in real time and will activate the thermal fan when CPU temperature exceeds a user defined threshold Overheat circuitry operates independently from the CPU and can continue to monitor over heat conditions even when the CPU is in sleep mode Once the thermal sensor detects a CPU temperature that is above the set threshold it automatically turns on the thermal control fan to p
75. ector Pinout cece cceccccesscecesececesececsseceesseeeesseeeesseeees A 2 Figure A 3 Ethernet Connector Type RJ45 oo ee ccccccseceseceeseeesceceaeceeeseeeenseecsaeeneensees A 3 Figure A 4 VGA Connector Pinout 66esmreereenreeeeneeeennenenneeeenneeeenneeeena A 4 Figure B 1 Screw Locations for Rack Mount Slides rmrmrmee B 1 Figure B 2 RES 12XR3 Rack Mount Slide Installation wtrnrme B 3 Figure C 1 Power On after Linux DVD is Inserted into Drive ssessessesessseessesesseessesee C 2 Figure C 2 Skip Key schon e n E lustakas E ER C 2 Figure 3 Welcome Sereen sesss22ssacsducstarguzesdavieistansselalneshwas dates EA PEE E luts ATRA Cras C 3 Figure C 4 Language Selecting iii haiku eatiaaikensv allikana lha aa C 4 Figure C 5 Selecting Layout Py pei aici aka kaal ua C 5 Figure C 6 Enter Installation Numbers kavaga maaala vidin kulka alea alata C 6 Figure C 7 Partitonimti samsa ila fs Scenes Aate ia Vdd tal C 7 Figure C 8 Reviewing Options icc stasis ett Sar dasaa ins cts veav eda nces aad cas kandim ds teket laetud eae C 8 Figure C 9 Creating a Custom Layout iat omaks masai uianaklamss e telki C 9 Figure C 10 Setting Up Boot boadefu um Senne ea C 10 Figure C 11 Master Boot Record VIB Visas iescche need ees eomasdoscaahaesgstdeed Aree diewersaedeseiveredone C 11 Figure C 12 Network Devices List cea sstesesaseescead nteiesin Gael ddd Wasenteedd kRakaeen eda ies C 12 Figur
76. emrne xvii Front View of a Standard Rear I O RES 32 Chassis Doors Removed XX Rear View of a Standard Rear I O RES 32 Chassis cccceccceesseesseeeteeeeeeeees xxi Front View of a Front I O RES 32 Chassis xxi Rear View of a Front I O RES 32 Chassis cecsssesseeseeeeeceeceeceseeneeeseeeeees xxi RES 12XR3 with Front Doors installed msmeeneeeenneeeennee 1 1 External Features of the RES 12XR3 X8DTU F Motherboard 1 2 X8DTU F Motherboard Block Diagram itemteneeeeeneeenaeenneeeee 1 3 Open Top View of the RES 12XR3 Air Flow Diverter Removed 1 5 RES 12XR3 System LEDs and I O Connectors X8DTU F Motherboard 1 9 Remove the RES 12XR3 Protective Access Covet cccessseeseeeeseceteenseeaes 2 2 Remove RES 12XR3 Air Flow Deflector 2 4 Memory Module Slot Locations X8DTU F Motherboard 2 5 Memory Module Remowvali 24iciscinen eaten len av 2 6 Positioning of the RES 12XR3 PCI UIO Riser Cards see 2 7 PCI Riser Cards are attached to a Retainer Bracket imsemeneeee 2 8 Then inserted into the PCI slots of the Motherboard see 2 9 The RES 12XR3 has Three PCI Expansion Slots mteeeeenmeeea 2 9 Installation of the PCI Card Retainer Clip mimrenneeneneenneeenneene 2 10 The RES 12XR3 Lithium Battery and Mult
77. ersburg chipset e ICHIOR IOH 36D An overview of RES 12XR3 design and specifications is given in Chapter 1 Over view and Specifications of this manual This manual is intended for an experien ced system administrator with a knowledge of both networking and high speed server systems Website Information Themis Computer corporate and product information may be accessed on the World Wide Web by browsing the website http www themis com Your Comments are Welcome We are interested in improving our documentation and welcome your comments and suggestions You can email your comments tous at docfeedback themis com Please include the document part number in the subject line of your email Themis Computer Preface Notes Cautions Warnings and Sidebars The following icons and formatted text are included in this document for the reasons described Note A note provides additional informationconcerning the procedure or action being described the equipment This may involve but is not restricted to heavy equipment or sharp objects To reduce the risk follow the instructions accompanying this sym bol 1 Caution A caution describes a procedure or act ion that may result in damage to to the operator as a result of hazardous vol tages To reduce the risk follow the in 4 Warning A warning describes a procedure or ation that may cause injury or death structions accompanying this symbol Si
78. es data The options are 8 16 32 default 40 48 56 64 72 80 88 96 104 112 120 3 3 4 14 Intel VT d Select Enabled to enable Intel s Virtualization Technology support for Direct I O VT d by reporting the I O de vice assignments to V MM through the DMAR ACPI Tables This feature offers fully protected I O resource sharing across the Intel plat forms providing the user with greater reliability security and availability in net working and data sharing The settings are Enabled and Disabled default 3 3 4 15 Active State Power Management Select Enabled to use the power manageme nt for signal transactions between the PCI Express LO and L1 Links Select enabled to configure PCI Exp LO and L1 Link power states The options are Disabled default and Enabled 3 3 4 16 Slot SXB2 SXB3 Width This feature allows the us er to change the link width of a PCI slot as specified in order to support a riser or add on card installed in the slot The Options are x4x4 x8 default and auto Themis Computer 3 BIOS Setup Utility Advanced Setup Configurations 3 3 4 17 Slot SXB1 Width This feature allows the us er to change the link width of a PCI slot as specified in order to support a riseror add on card installedin the slot The options are x4x4x4x4 x4x4x8 x8x4x4 x8x8 default x16 and Auto as seen inthe table below 3 3 4 18 IOH PCI E Max Payload Size Some add on cards perform faster wi
79. etach the multiple wire cable routed over the battery see Figure 2 10 3 Locate the lithium battery socket and squeeze the latch see A Figure 2 11 on page 2 12 together until the battery lifts out of its socket stalled in the chassis Figure 2 10 shows the location of the battery on the Note The battery location is dependent on which motherboard is in X8DTU F Motherboard 2 11 Themis Computer RES 12XR3 Installation Manual Configuration 7 Version 1 2 4 Remove the old battery and replace with a new battery see Figure 2 11 Battery Latch A To release squeeze the battery latch together B and remove the battery from socket Figure 2 11 The RES 12XR3 Lithium Battery and Socket 2 1 4 2 Installing a Lithium Battery Perform the following steps to insert a new lithium battery 1 Tilt the replacement battery into the empty socket so that it is angled under the battery latch see B Figure 2 11 2 Carefully press down on the battery until it clicks firmly into place 2 1 5 SATA II Storage Drive Perform the following steps to remove and install a SATA II storage drive Note For SATA II drives the left hand removable storage drive SATA I IDO is designated as the boot drive The front bezel door of th e RES 12XR3 must be unloc ked and opened to access the SATA II storage drives 2 12 Themis Computer 2 Installation and Operation Installation Procedures 2 1 5 1 Opening the R
80. g layout B Release Notes Back Next Figure C 8 Reviewing Option Click Next once you have made your selections to proceed Step 9 If you chose one of the automatic partitioning options and selected Review you can either accept the current partition settings click Next or modify the setup using Disk Druid the manual partitioning tool If you chose to create a custom layout you mu st tell the installation program where to install Red Hat Enterprise Linux This is done by defining mount points for one or more disk partitions in which Red Hat Enterprise Linux is installed Y ou may also need to create and or delete partitions at this time see Figure C 9 on page C 9 Themis Computer C Red Hat Enterprise Linux 5 Installation Installation RED HAT ENTERPRISE LINUX 5 Drive dev sda 10237 MB Model VM VMware Virtual 5 aa fie New Eat Delete Reset RAID LVM Device CO cut Type Format ord Start End v LVM Volume Groups Y V iGroupod 10080 Logvo101 swap 1984 Logvol ext3 8096 2 Mar Drives e _ Hide RAID device LVM Volume Group members pRetease Notes Back gt Next Figure C 9 Creating a Custom Layout Click Next Step 10 Once you have configured your partitions set up a boot loader If you select No Boot Lo ader will be Installed you ll need to use a third party boot loader such as Partition Magic or Microsoft s TLDR Unless you want to set up a Boot Loader Pa
81. gtiasaceiasiatas 2 3 Table 2 2 RES 12XR3 Optimal Memory Population CPU1 Installed 2 3 Table 2 3 RES 12XR3 Optimal Memory Population CPU2 Installed 2 3 Table 2 4 RES 12XR3 Optimal Memory Population CPU1 CPU2 Installed 2 3 Table 2 5 IRU Riser Cards Available for the X8DTU F Motherboard 2 8 Table 3 1 PIO Mode Select Options ss ats ccieicatecesldemeetetteaste itunes tus advo gadis 3 16 Table 3 2 DMA Mode Select Options asset aastase tine Gace bins eds 3 16 Table A 1 PS 2 Keyboard Mouse Pinouts and Signal Definitions e A 1 Table A 2 USB Connector Signal Definitions sseseesessseessesessressessresresseesessrssressesse A 2 Table A 3 COM 1 Serial Connector Signal Definitions teeeaenrneeni A 2 Table A 4 RJ45 Ethernet Pinout Signals sssssessesneeseesseeseeseesseeseesresseeseesessseessesresseesse A 3 Table A 5 VGA Connector Pinout Signal Descriptions tneeenteeenneenne A 4 Table E 1 Dual USB Connector Pinout Signal Descriptions J10 ee D 4 Table E 2 COM1 Serial Connector Pinout Signal Descriptions J8 and J9 D 5 Table E 3 Stereo Audio Out Connector Pinout Signal Descriptions J1 D 6 xvi Themis Computer Preface This document entitled RES 12XR3 Installation Manual Configuration 7 pro vides in
82. gure 2 20 System Power Button and LED on the RES 12XR3 Front 2 20 Themis Computer 2 Installation and Operation Operation 2 3 3 Getting Started 2 3 3 1 Configuration 1 Make sure all SATA II drives are installed see SATA II Storage Drive on page 2 12 Drive ID numbers are shown in Figure 2 14 on page 2 14 Chap ter 2 Changes may be made through the BIOS 2 Make sure that a graphics card is installed in a PCI slot and connect a multi scan monitor to the SVGA or DVI connector 3 Attach a PS 2 keyboard and mouse to the appropriate connectors on the rear VO panel of the RES 12XR3 see Figure 1 5 on page 1 9 4 Turn the system on see previous section 2 3 3 2 Linux Installation The subject of installing the Linux operating system onto the RES 12XR3 is detailed in Appendix C Red Hat Enterprise Linux 5 Installation 2 3 4 Turning the System Off Caution Before turning your system off make sure to save all open files properly close applications and broadcast a warning to all users on any active networks 1 To turn the RES 12XR3 power of f press and hold the system power on of f button see Figure 2 20 page 2 20 for at least four 4 seconds This will shut down the system and turn off the POWER LED As an alternative a modern opera ting system Windows 9x or newer and Linux for example can turn of f the system after a graceful OS software shutdown Themis Computer RES 12X
83. he recommended place to install a boot loader unless the MBR already starts another operating system loader such as System Commander e The MBR is a special area on your storage drive that is automatically loaded by your computer s BIOS and is the earliest point at which the boot loader can take control of the boot process If you install it in the MBR when your machine boots GRUB presents a boot prompt You can then boot Red Hat Enterprise Linux or any other operating system that you have configured the boot loader to boot see Fig ure C 11 on page C 11 Themis Computer C Red Hat Enterprise Linux 5 Installation Installation e The first sector of your boot partition This is recommended if you are already using another boot loader on your system In this case your other boot loader takes control first You can then configure that boot loader to start GRUB which then boots Red Hat Enterprise Linux install Boot Loader record on dev nda Master Boot Record MER Sev NGal Hest sector Of BOOL partition Charge Drive Order force LBA32 not normally required IF You ws to add omtault options to the boot command enter them into Ihe General kere parameters Holt General heme parameters D Avase Notes Dack gt Wext Figure C 11 Master Boot Record MBR If your system only uses Red Hat Enterprise Linux you should choose the MBR Click the Change Drive Order button if you would like to rearrange the drive or
84. hese chassis slots 3 Store the cover in a safe place until it is replaced Rear View A Loosen the 2 captive access cover screws Chassis slot Chassis slot Left side top edge B and slide the top cover toward the rear until the top hooks and tabs clear all chassis slots Figure 2 1 Remove the RES 12XR3 Protective Access Cover 4 Proceed to the appropriate sect ion to install or replace a memory module page 2 3 PCI card page 2 6 or lithium battery page 2 11 2 2 Themis Computer 2 Installation and Operation Installation Procedures 2 1 2 Memory Modules The RES 12XR3 supports memory according to Table 2 1 Note the total memor y capacity varies according to the motherboard installed in the RES 12XR3 Table 2 1 RES 12XR3 Memory Capacity Memory Parameters Motherboard DDR3 Number Pins A per Capacity Registered Speed MHz of DIMMS DIMM ECC X8DTU F 192 GB Yes 1333 1066 800 12 240 Caution Exercise extreme caution when in stalling or removing FBD Memory Modules to prevent any possible damage Table 2 2 RES 12XR3 Optimal Memory Population CPU1 Installed DIMMs Branch 0 Branch 1 Branch 2 3 DIMMs P1 DIMM 1A P1 DIMM2A P1 DIMM3A 6 DIMMs P1DIMM1A P1 DIMM1B P1DIMM2A P1 DIMM2B P1 DIMM3A P1 DIMM3B Table 2 3 RES 12XR3 Optimal Memory Population CPU2 Installed DIMMs Branch 0 Branch 1 Branch 2 3 DI
85. ion 1 2 2 Use anti static mats heel straps or air ionizers to give added protection 3 Handle electrostatic sensitive components boards and assemblies by the case or the PCB edge 4 Avoid contact with pins leads or circuitry 5 Turn off power and input signals befo re inserting and removing connectors or test equipment 6 Keep the work area free ofnon conductive materials suchas ordinary plastic as sembly aids and Styrofoam 7 Use field service tools such as cutters screwdrivers and vacuums that are con ductive 8 Always place drives and boards PCB assembly side down on the foam Instructions for the Lithium Battery vi Systems are equipped witha lithium battery installed on the mothe rboard To replace this battery please observe the instructions that are described in this man ual Warning There is a danger of explosion whenthe wrong type of battery is used as a replacement Themis Computer Table of Contents Safety Instructions sultanaadi bee A GA iv Pref ae 25225 hse ih ss keeta tect adh kates teaksid cba hec Nick Soot os Mea otata aN SERIE aN ea eas sabes xvii 1 Overview and Specifications rrmsnreeenreeeeneeeenneneenneeeenne neeme 1 1 Fil OVERVIEW s titud lsukshi ilis RRE 1 1 1 24 Special Features autasuks malmiks sms 1 6 1 2 1 Recovery trom AC Power Loss aussi 1 6 12 PC Health Monitoring sus mamkuusuasalma as kasaka 1 6 1 3A Fan St
86. iple Wire Cable 2 11 The RES 12XR3 Lithium Battery and Socket 2 12 Opening the RES 12XR3 Front Doors rait oina nakieea neat aiteasoeaiaes 2 13 Unlocking the RES 12XR3 Storage Drives Front Doors Removed 2 13 RES 12XR3 Storage Drive Removal tii cscsdecsssscsteadacsssecsdaksotsdscine kordad ent 2 14 The RES 12XR3 Hot Swappable 38 mm Fans cccccesceseeeeseeeseeeeeeeees 2 16 Removing One of the Five RES 12XR3 38 mm Fans ec eeceeceeeeeeteeeeeees 2 16 Themis Computer xiii RES 12XR3 Installation Manual Configuration 7 xiv Figure 2 17 The RES 12XR3 Power Supply Locking Mechanism mmsemeeee 2 17 Figure 2 18 Right Rack Mount Bracket ceceeccesecesecseceseeeeeeeeeeeeeceaeceeeneeeneeeeeeaeenaes 2 19 Figure 2 19 AC Power Socket and LED on the RES 12XR3 Reat mmee 2 20 Figure 2 20 System Power Button and LED on the RES 12XR3 Front 2 20 Figure 3 1 Main BIOS Setup SOrGSM4 sikikateaadak laskus adult pae 3 3 Figure 3 2 Advanced Settings is sccscs dite taa Sue kudedest laatade Sulot veateate kui 3 5 Figure 3 3 Security Settings A idikas idane carseat iena sets is i leita lav t 3 28 Figure 3 4 Boot Settings usus a eek Sk ot ta aie od Sia A aaa layin ea 3 30 Fig re 3 5 EXI OPUONS Sannu naa tas kanti eae ae R Meret 3 32 Figure A 1 USB Connector PINDU riksa aiandid katate cdl tana A 2 Figure A 2 COM 1 Serial Conn
87. it is recommended that you do not choose to create a custom layout and instead let the installation program partition for you You can configure an iSCSI tar get for installation or disable a dmraid device from this screen by clicking on the Advanced storage configuration button see Figure C 7 on page C 7 Themis Computer C Red Hat Enterprise Linux 5 Installation Installation RED HAT ENTERPRISE LINUX 5 Installation requires partitioning of your hard drive By default a partitioning tayout Is chosen which is reasonable for most users You can eltner choose to use this oF create your own Remove linux partitions on sefected drives and create default layout Select the drive s to use for this installation Advanced storage configuration Reylew and modify partitioning layout _ Retease Notes Back W Next Figure C 7 Partitioning Click Next to continue Step 8 Create default layout allows you to have some control concerning what data is removed if any from your system Your options are e Remove all partitions on selected drives and create default layout select this option to remove all partitions on your storage drive s this includes partitions created by other operating systems such as Windows VFAT or NTFS partitions e Remove Linux partitions on selected drives and create default layout select this option to remove only Linux partitions partitions created from a previous Linux i
88. ive is fully inserted in its slot insert the key into the barrel lock and turn it 45 degrees counter clockwise The drive is now locked chassis If the handle isclosed before thedrive is fully inserted the latch mechanism t Caution When in the closed position the la tch handle secures the drive to the may not fully engage to secure the drive 5 If you are installing anothe storage drive repeat Steps 1 4 for each additional drive 2 1 6 Hot Swappable 38 mm Fan The RES 12XR3 contains five high speed 38 mm fans each of which can be hot swapped in the field in the event of a fan failure 2 1 6 1 Removing and Installing a 38 mm Fan Perform the following steps to remove and install a 38 mm fan Note Since RES 12XR3 fans are hot swappable it is not necessary to turn off system power in order to remove and replace a fan 1 Push the fan lid lock left to unlock the fan lid seeFigure 2 15 on page 2 16 Pull the fan lid upward exposing the five 38 mm fans 2 Each fan is secured by a fan lock located on top of the fan To remove a fan push the fan lock toward the front of the fan and pull the fan directly upward see Figure 2 16 on page 2 16 3 When the fan is removed its 3 wire c onnector will automatically be discon nected from the chassis Insert the re placement fan carefully into the empty fan slot until it is flush wth the other fans The 3 wre connector will automat ically engage its counterpart su
89. lity When the CPU temperature reaches this predefined threshold the CPU and system cooling fans will run at full speed 2 To avoid possible system overheating please be sure to provide adequate airflow to your system 3 3 9 2 The options are e The Early Alarm Select this setting if you want the CPU overheat alarm including the LED and the buzzer to be triggered as soon as the CPU temper ature reaches the CPU overheat threshold as predefined by the CPU manu fac turer The Default Alarm default Select this setting if you want the CPU overheat alarm including the LED and the buzzer to be triggered when the CPU tem perature reaches about 5 C above the threshold temp erature as predefined by the CPU manufacturer to give the CPU and system fans additional time needed for CPU and system cooling In both the alarms above please take immediate action as shown below CPU 1 Temperature CPU 2 Temperature System Temperature This feature displays current temperature readings for the CPU and the System The following items will be displayed for your reference only CPU1 Temperature CPU2 Temperature The CPU thermal technology that reports absolute temperatures Celsius Fahrenheit has been upgraded to a more advanced feat ure by Intel in its newer processors The basic concept is each CPU is embedded by unique temperature information that the motherboard can read This Temperature Threshold or Temperature Tolerance
90. llow the host server to allocate an IP address based on a table cont aining MAC Address IP Address pairs that are manually entered probably by a network administrator Only clients with a MAC address listed in the MAC IP Address Table will be assigned an IP address The IP Address allocated to the client is on a longer term basis than that assigned by the DHCP mentioned in the other option The options are DHCP default and Static IP Address The BIOS will automatically enter the IP address of this machine however it may be over ridden IP addresses are 6 two di git hexadecimal numbers Base 16 0 9 A B C D E F separated by dots 1 e 00 30 48 D0 D4 60 Subnet Mask This item displays the current subnet mask setti ng for your IPMI connection The value of each three digit number separated by dots should not exceed 255 Themis Computer 3 BIOS Setup Utility Advanced Setup Configurations Gateway Address The BIOS will automatically enter the Gateway address of this machine however it may be over ridden IP addresses are 6 two digit hexadecimal numbers Base 16 0 9 A B C D E F separated by dots 1 e 00 30 48 D0 D4 60 Mac Address The BIOS will automatically enter the Mac address of this machine however it may be over ridden Mac addresses are 6 two digit hexadecimal numbers Base 16 0 9 A B C D E F separated by dots i e 00 30 48 D0 D4 60 3 3 14 Event Log Configuration 3 3 14
91. lock Addressing 3 15 Lower Right PCI Expansion Slot 2 10 M Main BIOS Setup Screen 3 3 memory 1 4 memory modules ECC SDRAM 2 4 2 5 Themis Computer Index N Noise Level 7 16 noise specification 1 16 Notes xxili NVRAM 3 17 O Onboard VGA 3 18 Opening the RES 12XR3 Front Doors 2 13 Operating temperature 1 4 Output Voltage 1 16 Overheat LED 12 11 P Packaging and Shipping 1 17 Packaging Components E 2 PC Health Monitoring 1 6 PCI Card Retainer Clip 2 10 PCI cards 2 1 2 6 PCI IDE Bus Master 3 18 PCI latency 3 18 PCI PnP Configuration Boots Graphics Adapter Priority 3 18 Clear NVRAM 3 17 Load Onboard LAN1 Option ROM 3 18 Load Onboard LAN2 Option ROM 3 18 Onboard LAN Option ROM Select 3 18 PCI IDE BusMaster 3 8 PCI Latency Timer 3 18 PCI E Slot from SXB1 3 18 PCI E Slot from SXB2 3 18 PCI E Slot from SXB3 3 18 Plug amp Play OS 3 17 SR 10V Supported 3 8 Peripheral Support 4 pinouts Gigabit Ethernet LAN A 3 serial ports A 2 D 5 USB port A 2 VGA Connector A 4 Plug amp Play 3 17 Plug and Play BIOS 7 Plugging inandSecu ring the AC Power Cords 2 20 Port A and Port B D 3 POST 3 5 power button 4 button and LED 2 20 cord sockets 4 LED 2 21 Power Configuration Power Button Function 3 6 Restore on AC Power Loss 3 7 Watch Dog Function 3 6 power cords 2 20 power supply 1 4 2 1 installation 2 18 locking mechanism 2 17 Power Supply Module 7 10 PSM LED Off 1 10 PSM LED On 0 power
92. m To learn how to secure the AC power co rds and the power cord retainer bracket refer to Section 2 3 1 Plugging in the AC Power Cords on page 2 20 Themis Computer RES 12XR3 Installation Manual Configuration 7 Version 1 2 1 18 1 9 2 Rack Mount Slides Optional Rack Mount Slides can be mounted on each side of the RES 12XR3 for the purpose of sliding the unit in and out ofa rack Mounting slid es are optional and can be ordered at the time of purchase To learn how to install rack mount slides refer to A ppendix B Rack Mount Slide Installation Table 1 8 Approximate Weights of the RES Series Weight CPU ae Model Approximate Sockets Depth Description RES 12XR3 19 5 Ibs 8 9 kg 2 20 Includes e All CPU sockets filled e 6 DIMMs RES 12XR3 S 17 7 7 kg 2 17 e 2 storage drives e 2 PCI cards e 1 CD RW DVD ROM drive RES 11XR3 16 5 Ibs 7 5 kg 1 17 e 2 power supplies RES 22XR3 25 Ibs 11 4 kg 2 20 Includes 3 e All CPU sockets filled RES 22XR3 S 23 Ibs 10 4 kg 2 17 e 6 DIMMs e 2 storage drives e 2 PCI cards RES 22XR3 FIO 25 3 Ibs 11 5 kg 2 16 EA EO e 2 power supplies RES 21XR3 22 5 Ibs 10 2 kg 1 17 RES 32XR3 28 5 Ibs 12 9 kg 2 20 Includes A e All CPU sockets filled RES 32XR3 S 26 5 Ibs 12 0 kg 2 17 e 6 DIMMs e 2 storage drives Ra e 2 PCI cards RES 32XR3 FIO 29 0 Ibs 13 2 kg 2 16 1 CD RW DVD ROM drive e 2 power supplies
93. me Installation Manual RES 12XR3 Configuration 7 1RU 19 Rack Mount Rugged Enterprise Server with X8DTU F Motherboard Configuration Two Quad Dual Core 5500 or Quad Six Core 5600 Xeon CPUs RES 12XR3 Configuration Two Guad Dual Core 5500 or Guad Six Core 5600 Xeon RES 12XR3 Configuration Two Guad Dual Core 5500 or Guad Six Core 5600 Xeon RES 12XR3 Configuration Two Quad Dual Core 5500 or Quad Six Core 5600 Xeon RES 12XR3 Configuration Two Quad Dual Core 5500 or Quad Six Core 5600 Xeon RES 12XR3 Configuration Two Quad Dual Core 5500 or Quad Six Core 5600 Xeon RES 12XR3 Configuration Two Guad Dual Core 5500 or Guad Six Core 5600 Xeon RES 12XR3 Configuration Two Quad Dual Core 5500 or Quad Six Core 5600 Xeon RES 12XR3 Configuration Two Quad Dual Core 5500 or Quad Six Core 5600 Xeon 7 CPUs 7 CPUs 7 CPUs CPUs 7 CPUs 7 CPUs CPUs CPUs THEMIS THEMIS THEMIS THEMIS THEMIS THEMIS THEMIS THEMIS RES 12XR3 Installation Manual Configuration 7 SuperMicro Motherboard X8DTU F THEMIS aa Themis Computer Americas and Pacific Rim 47200 Bayside Parkway Fremont CA 94538 Phone 510 252 0870 Fax 510 490 5529 World Wide Web http www themis com Version 1 2 July 2011 Themis Computer Rest of World 5 Rue Irene Joliot Curie 38320 Eybens France Phone 33 476 14 77 80 Fax 33 476 14 77 89 Copyright 2011 Themis C
94. n Clear Event Log 3 27 Mark All Events as Read 3 27 PCIE Error Log 3 27 View Event Log 3 27 Exit Options screen 3 32 Expansion slots 1 4 F Fan Status Monitor 1 6 flanges 2 19 Flash EEPROM 3 1 form factor IRU 1 2 front bezel 2 12 front doors 2 12 2 13 Front I O 16 Deep Chassis Manual Matrix xx front panel 1 4 fused AC 1 15 G General Specifications 74 Gigabit Ethernet A 3 graphics card 2 27 Graphics Port Connector Pinout Descriptions A 4 H Hardware Health Event Monitoring CPU 1 Temperature 3 21 CPU 2 Temperature 3 21 CPU Overheat Alarm 3 20 Default Alarm 3 2 Early Alarm 3 2 CPU Temperature Levels High 3 22 Low 3 22 Medium 3 22 Fan Speed Control Modes 3 22 Fanl Fan8 Reading 3 22 System Temperature 3 21 3 22 Voltage Monitoring 3 23 Hardware Health Monitor CPU1 Temperature CPU2 Temperature 3 2 I T O Cables attaching D 3 T O Connectors UID Unit Identifier Switch 2 Ethernet LAN Port 1 12 IPMI 2 PS 2 keyboard 2 PS 2 mouse 1 12 Serial Ports 7 12 USB Serial Ports 1 12 VGA Connector 1 12 Index 3 Themis Computer RES 12XR3 Installation Manual Configuration 7 Version 1 2 T O connectors 8 VO faceplates 4 ICHIOR IOH 36D xxii IDE 3 14 IDE Detect Timeout 3 15 IDE Programmable I O 3 16 IDE SATA Floppy Configuration Fourth IDE Master 3 5 IDE Detect Timeout 3 15 IDE Master Slave Block Multi Sector Transfer 3 15 LBA Large Mode 3 15 PIO Mode 3 6 Type devic
95. n 2 3 4 Turning the System Off on page 2 21 Updated Table 2 5 IRU Riser Cards A vailable for the X8DTU F Mother board on page 2 8 Changed photos in Figure 2 5 Figure 2 7 to display different riser card option Completely reworked Chapter 3 BIOS Setup Utility to the latest version used on the X8DTU F motherboard Added Appendix D Optional Remote On Off Switch e Added Appendix F Repackaging Instructions Formerly Appendix E e Added clarifying remarks stating that the left PCI slot is not used Updated Figure 1 3 X8DTU F Motherboard Block Diagram on page 1 3 e Added Table 1 3 Power Supply LED Behavior on page 1 10 e Assorted minor edits and changes throughout the manual Version Uys osc ecstatic avec rosie alec a bi cee tat ee ku February 2010 iii Themis Computer RES 12XR3 Installation Manual Configuration 7 Version 1 2 Safety Instructions To maximize user safety and ensure correct device operation all instructions con tained in this section should be read carefully Caution It is important that the user obs erve all warnings and instructions that are on the device and contained in this manual The device must be used in accordance with the instructions for use e Electrical installations in the room must correspond to the requirements of respective regulations e Take care that there are no cables part icularly mains cables in areas where persons can trip
96. n the front VO panel see Figure E 6 The Stereo Audio Out pinout is listed in Figure E 6 header J1 pinout signal descrip tions are described in Table E 3 Stereo Audio Out Jack Left Line Out Right Line Out USB to Audio Chip Header Line In Header 5 Volts USB DM Line Out Left Line In Left USB DP Line Out Right Line In Right X No Connection DM Data Minus DP Data Positive Figure E 6 Stereo Audio Connector Pinout Table E 3 Stereo Audio Out Connector Pinout Signal Descriptions J1 Pin Signal Name Pin Signal Name Pin Signal Name 1 No Connection 4 Data Minus 7 Ground 2 5 volts 5 No Connection 8 Ground 3 No Connection 6 Data Plus 9 No Connection E 6 Themis Computer E Optional RES Audio USB Serial Port Module E 2 Ordering the RES Audio USB Serial Port Custom Module Because internal modifications must be made to the RES chassis in order to support the RES Audio USB Serial Port Custom Module the Custom Module must be spec ified on the purchase order for your RES system E 7 Themis Computer RES12XR3 Installation Manual Configuration 7 Version 1 2 E 8 Themis Computer Appendix Repackaging Instructions F 1 Repackaging for Shipment If it becomes necessary for any reason to return your RES 12XR3 unit back to The mis it is very important that the original packaging materials be used according to the rep
97. nd solution for an operating system that does not have EHCI Hand Off support When enabled the EHCI Interface will be changed from the BIOS con trolled to the OS controlled The options are Disabled and Enabled default 3 3 4 25 Route Port 80h Cycle to 3 3 5 3 3 5 1 Use this item to decide where tor oute Port 80h Cycle to The Options are LPC default and PCI IDE SATA Floppy Configuration When this submenu is selected the AMI BIOS automatically detects the presence of the IDE SATA and floppy devices and displays the following items SATA 1 Configuration If Compatible is se lected it sets SA TAI to legacy compatibility mode while selecting Enhanced sets SATA 1 to native SATA mode The options are Disabled Compatible and Enhanced default Configure SATA 1 as This feature allows the user to select the drive type for SA TA 1 The options are IDE RAID and AHCI When the option RAID is selected the item ICH RAID Code Base will appear When the opti on AHCI is selected the item SA TA AHCI will be available ICH RAID Code Base Available when the option RAID is se lected Select Intel to enable Intel s SATA RAID firmware to configure Intel s SATA RAID settings Select Adap tec to enable Ad aptec s SATA RAID firmware to configure Adaptec s SATA RAID settings The options are Intel default and Adaptec SATA AHCI Available when the option AHCI is selected Select Enable to enable the function of Serial ATA Ad
98. nector Pimout ccccsscesssecsscesssecesssscesnsscesnenessseseesees D 5 Figure E 6 Stereo Audio Connector Pinout esreereenreeereeeenseeeenneeeenae D 6 Figure F 1 Packaging Components 4 ccnstnaticendieecs canes aasa tasa jaa E 2 Figure E 2 gt Order OF Assembly op 2is 2613sesaces shaven tessandechadvasians seta dasdheus lakanud talade aka E 4 List of Tables Table 1 RES x2XR3 20 Deep Chassis Manual Matrix imeeemeenenenanee ne xviii Table 2 RES x2XR3S RES x1XR3 17 Deep Chassis Manual Matrix XIX Table 3 Front I O 16 Deep Chassis Manual Matrix cccccsccescceseceeseecseceteeeeeeenseees XX Table 1 1 RES 12XR3 Motherboard Options Configuration 7 11 1 2 Table 1 2 Major Features of RES 12XR3 Configuration 7 11 1 4 Table 1 3 Power Supply LED Behavior naiskonnale atleediks 1 10 Table 1 4 CSTE LEDS aata vala sa sus ctor na A sae Nae 1 11 Themis Computer XV RES 12XR3 Installation Manual Configuration 7 Version 1 2 Table 1 5 Rear Panel VO Conneototsi muusmusaumsussu muusus 1 12 Table 1 6 RES 12XR3 General Specifications 4 ska kevad kaa ema 1 14 Table 1 7 RES 12XR3 Electrical Specifications eseeesnneoeneonaaaotuaonneenaaao nae 1 15 Table 1 8 Approximate Weights of the RES Series sereonseoneneonnao en oeneonnae e 1 18 Table 2 1 RES 12XR3 Memory Capacity saciissssasnsrsisstcestxtantesvacsatastenenesSama
99. ng Container Figure F 1 Packaging Components F 2 Themis Computer F Repackaging Instructions F 3 J Instructions for Repackaging Re assemble the packaging material about the equipment in accordance with the fol lowing instructions see Figure F 2 on page F 4 1 2 3 Inspect the original packing materials for serviceability Place the foam crush resistant base layer in the bottom of the box Place the equip ment in the cutout of the bottom layer unit fitting snugly inside Place the two top crush res istant layers two the rear and front of the RES 12XR3 This will leave a small horiz ontal gap in which accessories can be placed Make sure all components of the box are firmly in plac e pressing down on the surface area of the foam to insure proper seating of the material Seal the top of the box with strong packing tape wrapping the tape com pletely around the box both lengthwise and crosswise Prepare for shipment in accordance with the instructions received from The mis Computer Note Please contact Themis if new packaging material or shipping instructions are required You can reach Themis at 1 510 252 0870 Mon Fri 8am Spm PST or by Email to support themis com F 3 Themis Computer RES 12XR3 Installation Manual Configuration 7 Version 1 2 The order of assembly when repackaging the RES 12XR3 for shipment as shown in Figure F 2 Figure F 2
100. ngle phase AC input from 100 to 265 V ac 47 to 63 Hertz sources Filtered and fused internal AC is s upplied to each power supply from a rear mounted power connection Two optional N 1 redundant DC power supplies of750 watts 48 volts or 500 watts 28 volts each may be substituted for the AC power supplies see Table 1 7 These supplies should be specified at the time of your order J Note Some AC RES systems may be installed with 650 watt instead of 750 watt power supplies which should not effect the performance of the system Themis Computer 1 15 RES 12XR3 Installation Manual Configuration 7 Version 1 2 1 8 2 2 1 8 3 1 8 3 1 1 8 3 2 1 8 3 3 J Output Voltage The RES 12XR3 power supply provides output voltages that are split between 3 3V 5V 5V sh 12V and 12V rails Environmental Shock The RES 12XR3 is designed to survive an elevated shock environment All struc tural components are welded together enabling the system to survive a maximum 3 axis shock load of 35G at 25 ms duration Electrostatic Discharge The RES 12XR3 is designed to tolerate electrostatic pulses up to 15 kilovolts KV with no impact on system operation Noise The RES 12XR3 conforms to the 54 db noise specification Note All RES systems are shipped with BIOS fan speed set tothe quietest mode The default fan speed control mode ofthe RES 12XR3 Configuration 7 isEnergy Saving ES Themis Computer 1
101. nology EIST Enhanced Intel SpeedS tep Technology allows the system to automatically adjust processor voltage and core frequenc y in an effort to reduce power consump tion and heat dissipation Please refer to Intel s web site for detailed information The options are Disable Disable GV3 and Enable Enable GV3 default 3 3 3 13 Intel TurboMode Technology Select Enabled to use the Turbo Mode to boost system performance The options are Enabled and Disabled 3 3 3 14 C1E Support Select Enabled to use the feature of Enhanced Halt State C1E significantly reduces the CPU s power consumption by reducing the CPU s clock cycle and voltage during a Halt State The options are Disabled and Enabled 3 3 3 15 Intel C STATE Tech If enabled C State is set by the system automatically to either C2 C3 or C4 state The options are Disabled and Enabled default 3 3 3 16 C State package limit setting If set to Auto the AMI BIOS will automatically set the limit on the C State package register The options are Auto default C1 C3 C6 and C7 3 3 3 17 C1 Auto Demotion When enabled the CPU will conditionally demote C3 C6 or C7 requests to C1 based on un core auto demote information The options are Disabled and Enabled 3 3 3 18 C3 Auto Demotion When enabled the CPU will conditionally demote C6 or C7 requests to C3 based on un core auto demote information The options are Disabled and Enabled 3 9 Themis Compu
102. nstallation This does not remove other partitions you may have on your storage drive s such as VFAT or FAT32 partitions e Use free space on selected drives and create default layout select this option to retain your current data and partitions assuming you have enough free space avail able on your storage drive s Using your mouse choose the storage dr ive s on which you want Red Hat Enter prise Linux to be installe d If you have two or more drives you can choose which drive s should contain this installation Unselected drives and any data on them are not touched Themis Computer C 7 RES 12XR3 Installation Manual Configuration 7 Version 1 2 To review and make any ne cessary changes to the part itions created by automatic partitioning select the Review option After selecting Review and clicking Next to move forward the partitions created for you in Disk Druid appear You can make modifications to these partitions if they do not meet your needs see Figure C 8 insulation requires partitioning of your hard drive By Gefauit a partitioning Layout is chosen which is feasonatee for most users You can either choose h Remove af partiti selected drives and create default layout Remove linux partitions on selected drives and create default layout Use free space on selected drives and create default layout Create custom layout Advanced storage configurator Heyliw and modify partitionin
103. of the chassis vee Out MAN TE Wn AA Connected to an audio connector on the rear of the chassis Line In The RES Custom Module contains an Audio chip on its PCB routed to J1 PCB Printed Circuit Board e Attach the appropriate I O Cables from the RES Custom Module A to external devices Port A USB Ports A and B DB9 Serial Port J9 Stereo Audio Out Jack Optional Figure E 3 Attach the Appropriate I O Cables E 3 Themis Computer RES12XR3 Installation Manual Configuration 7 Version 1 2 If the RES Audio USB Serial Port Custom Module is removed from its drive slot it is recommended that the end of the moth erboard I O cable attached to the Module header be appropriately tagge d so that it can be corr ectly reconnected when the Module is reinstalled If the I O cable is removed from its motherboard header it should also be appropriately tagged for proper reconnection at a later time E 1 2 Connector Pinouts E 1 2 1 USB Ports A and B The RES Audio USB Serial Port Cust om Module supports two USB Universal Serial Bus port connectors see Figure E 4 for pinouts USB A and USB B on the front I O panel USB pinout descriptions are listedin Figure E 4 pinout signal descriptions are described in Table E 1 USB A USB B Header USB2 5V To J10 Pin 2 t At Bt USB1 5V To J10 Pin 1 USB2 DM To J10 Pin 4 42 1 B2 USB1 DM To J10 Pin 3 USB2 DP To J10 Pin 6 A3 B3 U
104. omputer Inc ALL RIGHTS RESERVED No part of this publication may be reproduced in any form by photocopy microfilm retrieval system or by any other means now known or hereafter invented without the prior written permission of Themis Computer The information in this publication has been carefully checked and is believed to be accurate However Themis Computer ass umes no resp onsibility for inaccuracies Themis Computer retains the right to make changes to this publication at any time without prior notice Themis Computer does not assume any liability arising from the application or use of this publication or the product s described herein RESTRICTED RIGHTS LEGEND Use duplication or disclosure by the United States Government is subject to the restrictions set forth in DFARS 252 227 7013 c 1 ii and FAR 52 227 19 TRADEMARKS and SERVICEMARKS Themis is a registered trademark of Themis Computer Inc Intel and Xeon are registered trad emarks of Intel Corporation Red Hat isa registered trademark of Red Hat Inc Linux is a registered trademark of Linus Torvalds SuperMicro is a registered trademark of Super Micro Computer Inc All other trademarks servicemarks or registered trademarks used in this publication are the property of their respective owners CE Marking CE This product complies with the European EMC Directive 2004 108 EC and the European Low Voltage Safety Directive 2006 95 EC Safe
105. on t have an installation number select the Skip Entering Installation Number Radio Button Click OK and if you did not enter an installation number you ll be given a warning Click Skip to continue see Figure C 6 on page C 6 Themis Computer RES 12XR3 Installation Manual Configuration 7 Version 1 2 C 6 RED HAT ENTERPRISE LINUX 5 SeSect the appropriate keyboard for the system v Sovenan Spanish Sreown Swiss French Th instat tre tuli set of supported packaipes jneilkmed ii Our Subscription please enter your instatiation Number Seles Freonen kati NN man A ve Swiss German lestall ton Murriteet Swiss German NARR Sap entenng instaikatvon Niurnper Tani lirmoript Tamus Typewriter x Demi Jo Turkish US intematronal Ubracian Unvted tingdom emana Notar Po gt Next Figure C 6 Enter Installation Number Click Next to continue Step 7 Partitioning allows you to divide your st orage drive into isolated sections where each section behaves as its own storage drive Partitioning is particularly use ful if you run multiple operating systems On this screen you can choose to create the default layout or choose to manual parti tion using the Create custom layout option of Disk Druid The first three options allow you to perform an automated installation without hav ing to partition your drive s yourself If you do not feel comfortable with partition ing your system
106. ores Two full width Intel QuickPath interconnect links up to 6 4 GT s of data transfer rate in each direction e Virtualization Technology Integrated Management Engine supported e Point to point cache coherent interconnect Fast narrow unidirectional links and Concurrent bi directional traffic e Error detection via CRC and Error correction via Link level retry Themis Computer RES 12XR3 Installation Manual Configuration 7 Version 1 2 1 8 Specifications 1 8 1 General Table 1 6 lists general specifications for the RES 12XR3 Table 1 6 RES 12XR3 General Specifications Parameter Description Dimensions e 1 75 1RU high e 17 43 2 cm wide 19 rack mountable e 20 50 8 cm deep e Approximately 19 5 pounds 8 9 kg includes 2 full length Weight up to 12 25 PCI cards 1 CD RW DVD ROM drive 2 CPUs 6 DIMMs 2 SATA storage drives and 2 power sup plies e Add 8 8 pounds 4 kg for the shipping container and two AC power cords e The manual and associated shipping paperwork weighs approximately 1 lb 0 5 kg 19 Rack Mountable e Left and right rack mount tabs attached to chassis with Slide capability e Left and right rack mount slides are optional Temperature Operating e 0 upto 65 C 32 up to 149 F Non Operating e 40 to 70 C 40 to 158 F Relative Humidity Operating e 8 to 95 non condensing Non Operating e 5 to 95 non condensing Ma
107. ough the Modul e may be installed into any RES system Figure E 3 on page E 3 shows the inte rnal connections that are made between the RES Custom Module and the RES motherboard RES 32XR3 FIO x G2 a INNI e 0 MIT e After attaching header cables through a vacant drive slot to RES motherboard headers and optional rear panel audio I O connectors insert the RES Custom Module into the vacant drive slot RES Audio USB Serial Port Custom Module Figure E 2 Install the RES Audio USB Serial Port Custom Module E 2 Themis Computer E Optional RES Audio USB Serial Port Module RES Audio USB Serial Port Custom Module E 1 1 Attach I O Cables Figure E 3 shows the three types of I O s upported by the RES Audio USB Serial Port Custom Module e USB Port A and Port B e One Serial Port e One optional Stereo Audio Jack installed only by customer request Figure E 3 also shows the header connectors th at are routed by cable through the empty drive slot into the RES system for connection to the proper RES motherboard surface headers or optional rear audio connectors To RES Motherboard surface top side headers To Rear of Chassis i Optional Connected to any available USB header USB Serial USB to Audio Out Audio In Connected to any available Serial header Header Header Audio Chip Line Out Line In Connected to any available USB header J10 J8 J1 Connected to an audio connector on the rear
108. over them e Do not use a mains connection in sock ets shared by a number of other power consumers Do not use an extension cable e Only use the mains cable supplied e The unit is completely disconnected from the power source only when the power cord is disconnected from the power source Therefore the power cord and its connectors must always remain easily accessible e Do not set up the device in the proximity of heat sources or in a damp location Make sure the device has adequate ventilation e All connection cables must be screwed or locked to the chassis housing e The device is designed to be used in horizontal position only e The device is no longer safe to operate when the device has visible damage or the device no longer functions e In these cases the device must be shut down and secured against unintentional operation e Repairs may only be carried out by a person authorized by Themis Computer e The device may only be opened for the installation and removal of extension PCI cards memory modules storag e drives fan housi ngs power supplies Themis Computer RES 12XR3 Installation Manual Configuration 7 Safety Instructions and the lithium battery all in accordan ce with the instructions given in this manual e If extensions are made to the device the legal stipulations and the device spec ifications must be observed e The device must be switched of f when removing the top cover
109. r one of the several slots along the top edge of the RES 12XR3 chassis see B Figure 2 9 Press down firmly on the clip until it snaps into position A Install a PCI Retainer Clip on the edge of the Top Right PCI Card B Slide the Retainer Clip along the edge of the Top Right PCI Card until it is over a chassis slot then press firmly into slot Figure 2 9 Installation of the PCI Card Retainer Clip Caution Be careful not to installa PCI Retainer Clip into one of the longer chassis slots used to secure the top cover of the RES 12XR3 4 Attach any internal I O ca bles to the installed PCI cards and carefully fold and tuck any exposed ribbon cables into the cabinet 5 If you have no further installations to perform close the RES 12XR3 chassis by refastening the top cover removed in Step 1 on page 2 2 6 Attach all external cables to the I O faceplates of the installed PCI UIO cards 2 10 Themis Computer 2 Installation and Operation Installation Procedures 2 1 4 Lithium Battery 2 1 4 1 Removing the Lithium Battery Perform the following steps to remove the lithium battery 1 Make sure the system is powered off see Operation on page 2 20 Exposed 8 eg Battery Lithium Battery L EO patapaan i TATAY m in Me Multiple Wire Cable Figure 2 10 The RES 12XR3 Lithium Battery and Multiple Wire Cable 2 If you cannot access the lithum battery directly you must move and or d
110. revent overheat damage to the Themis Computer 1 Overview and Specifications CPU In addition onboard chassis thermal circuitry can monitor overall system tem perature and alert users when chassis temperature exceeds a user defined threshold A Caution To avoid possible system overheating please be sure to provide adequate airflow to your system and check for any possible blockages System Resource Alert Available only through Supero Doctor III in the W indows OS environment or Supero Doctor II in Linux an optional third party product this feature is used to notify the user of certain system events For example you can also configure Supero Doctor to provide you with warnings when the system temperature CPU tempera ture voltages and fan speeds go beyond a pre defined range 1 4 1 4 1 ACPI Features Advanced Configuration and Power Interface ACPI defines a flexible and abstract hardware interface that pr ovides a standard me thod of integrating power manage ment features throughout the system This includes the hardware the operating sys tem and the application software Asa result the system can automatically turn peripherals CD ROMs NICs storage drives and printers for example on or of f This includes any consumer devices that may be connected to the system VCRs TVs telephones and stereo systems for example In addition to providing operating system power management ACPI offers
111. rial Port Custom Module D 1 COM Serial Connector Pinout D 5 COMI Serial Connector Pinout Signal Descriptions D 5 header connectors D 3 T O cables D 2 T O headers D 2 installation D 2 ordering D 7 PCB and Carrier D 1 rear audio connectors D 3 Stereo Audio Connector Pinout D 6 Index 1 Themis Computer RES 12XR3 Installation Manual Configuration 7 Version 1 2 Stereo Audio Out C onnector Pinout Signal Descriptions D 6 Stereo Audio Out jack D 6 USB Connector Pinout Signal Descriptions D 4 USB Connector Pinouts D 4 automatic voltage control 3 11 B BIOS Advanced Settings screen 3 5 BIOS Build Date 3 4 BIOS Build Version 3 4 BIOS Enhanced Host Controller Interface 3 14 BIOS Setup Utility Advanced Setup Configuration BOOT Features 3 5 Advanced Setup Configurations 3 5 ACPI Configuration 3 23 Advanced Chipset Control 3 10 Event Log Configuration 3 27 Hardware Health Event Monitoring 3 20 IDE SATA Floppy Configuration 3 14 IPMI Configuration 3 24 PCI PnP Configuration 3 17 Power Configuration 3 6 Processor and Clock Options 3 7 Remote Access Configuration 3 19 Set LAN Configuration 3 26 Super IO Device Configuration 3 19 View BMC System Event Log 3 25 Boot Configuration 3 30 Boot Device Priority 3 30 CD DVD Drives 3 31 Network Drives 3 31 Removable Drives 3 31 Retry Boot Devices 3 37 Storage Drives 3 30 USB Drives 3 31 Changing Configuration Data 3 2 Exit Options 3 32 Discard Changes 3 32 Discard Changes and E
112. rocessor platform is the first dual processing platform to offer the next generation point to point system interconnect interface replacing current Front Side Bus Technology and providing substantial system performance enhancement by uti lizing serial link interconnections allowi ng for increased bandwidth and scalabil ity The IOH connects to each proce ssor through an independent QuickPath Interconnect link Each link c onsists of 20 pairs of unid irectional differential lanes for transmission and receiving in addition to a differential forwarded clock A full width QuickPath interconnect link pair provides 84 signals Each processor supports two QuickPath links one going to the other processor and the other to the 5520 chip The 5520 chipset supports up to 36 PCI Express Gen2 lanes peer to peer read and write transactions The ICH1OR provide s up to 6 PCI Express ports three SA TA ports and two USB connections In additi on the Intel 5520 platform also of fers a wide range of RAS Reliability Availability and Serviceability features These fea tures include memory interface ECC x4 x8 Single Device Data Correction SDDC Cyclic Redundancy Check CRC parity protection out of band register access via SMBus memory mirroring memory sparing and Hot plug support on the PCI Express Interface Main Features of the 5500 Series Processor and 5520 Chipset Four 5500 to six 5600 processor cores in each CPU with 8MB shared cache among c
113. rse Notes KJ Reboot Figure C 20 Installation is Complete After your computer s normal power up sequence has completed the graphical boot loader prompt appears at which you can do any of the following things e Press Enter causes the default boot entry to be booted e Select a boot label followed by Enter causes the boot loader to boot the operat ing system corresponding to the boot label Do nothing after the boot loader s timeout period by default five seconds the boot loader automatically boots the default boot entry Do whatever is appropriate to boot Red Hat Enterprise Linux One or more screens of messages should scroll by Themis Computer RES 12XR3 Installation Manual Configuration 7 Version 1 2 Step 21 Eventually a login prompt or a GU I login screen if you installed the X Window System and chose to start X automatically appears see Figure C 21 RED HAT ENTERPRISE LINUX 5 Username Language star Shut Down Figure C 21 Login Screen Step 22 Once logged in you are ready to use the desktop see Figure C 22 OB Applications Places System GG 245 B F Figure C 22 Ready to use the Desktop C 20 Themis Computer Appendix Optional Remote On Off Switch D 1 Remote On Off Configuration Customers interested in installing an optional switch from which to remotely turn the RES 12XR3 Configuration 7 on or off are able to order a Remote On Off Switch mod
114. shippnes i change the default language O Engish tiime after tire installation ar igith eth alice ly Red Hat Linux can install and ai HI support several languages To HO Engish K ime use more Man ane language on CI Esnimis Your sysiom choose specific C Famese Farce ilanded languages to be installed or O jet select all languages to Nave all Ir h meigum available languages installed lf z d Pime te Canala on the system C Peach pence Use the Reset butten te cancel ai Feeney ears mmimirgi hornet alo etiam f Iz Brem Dnne o m j km SSS aS Figure C 4 Language Selection Once you select the appropriate language click Next to continue Step 5 Using your mouse select the correct layout type for example U S English for the keyboard you would prefer to use for the installation and as the system default see Figure C 5 on page C 5 Themis Computer C Red Hat Enterprise Linux 5 Installation Installation RED HAT ENTERPRISE LINUX 5 Qe Select the appropriate keyboard for the system Slovenian Spanish Sweden viks french Swiss French latint Suess German Swiss German tating Tamil insonpt Tamil Typewriters Turkish id Siler AAA US thteenational Ukrainian United Kingoom B Lammas notes oma Cone Figure C 5 Selecting Layout Type Once you have made your selection click Next to continue Step 6 Enter the installation nu mber if you d
115. si alas eaneiel 3 32 3 6 3 lt Di card CON ANCES cis recs cise ecole nasi aaa aal 3 32 3 6 4 Load Optimal Defaults maaila laka a al vaai 3 33 3 6 5 Load Fail Sate Detaults suseisjast itakse treat 3 33 Appendix A Connector Pinout iiimemenenennnneooonnnooonanooonanoonnnneennne emase A 1 A l PS 2 Keyboard and Mouse cicicitscva sia eine avin tuscan ao tated anne ase A 1 A2 USB PONS saak uk laimab mus mums A A 2 A3 Seral POFS ianitor e duces ats econ eas E EEE OEE vant eatin eee E vaaeweuans A 2 A 4 Gigabit Ethernet LAN Ports essssessesssessesseossossesseossessrsseossossesseessessosseessessosseesseono A 3 xii Themis Computer Table of Contents Aud V GA Display Port kordas cass cect aroen aren R RATA A 4 Appendix B Rack Mount Slide Installation B 1 Appendix C Red Hat Enterprise Linux 5 Installation mmemmeeee C 1 Gl Tint Og CO ines eenen E E A AE E E E eas C 1 E 2 AIAS AMON ak a aatal aatal C 1 Appendix D Optional Remote On Off Switch mmesmeeeeeneeeenneeeenneeeennee D 1 Dit Remote On Off Configuration sa care ded hadace vical voeean cinco eicecseaeectosenwniuend a D 1 D 2 Remote On Only Configuration s0stissaevekasvrvvr luntekavaksusvelk ad valule keas Gethadessesteedccaressess D 2 D 3 Ordering the Remote On Off Switch mimeeenneenneeneneenneenneeneeeenneeenneee D 2 Appendix E Optional RES Audio USB Serial Port Module
116. ssrssrssressessessessessrssresseeseee 3 5 3 31 BOOT FeatuteS oieee ae E aadli 3 5 Zankl QUICK BOGE Saal lad a 3 5 321220 AUE AOL tati militia 3 5 3 3 1 3 AddOn ROM Display Mode seteeneeevaneennneenneenenee 3 6 3 3 1 4 Bootup Num T eks tantsiti alaalia alt 3 6 3 3 1 5 Wait For Fl JEEITOT sieniniai kraesse ev dat tia 3 6 3 3 1 6 Hit Del Message Display 1 saisuiisavaseiteanveeidas vitndedakoeshvat laatu 3 6 Bethe Interrupt 19 Capture Si E saaki 3 6 3 3 2 Power Configuration kukka a aa ala 3 6 3 3 2 1 Watch Dog Functions ccsiss cicavssisssctieieoanes ahta ta vakkksanikkad valatud 3 6 3 3 2 2 Power Button Function usual muusik ad amau 3 6 3 3 2 3 Restore on AC Power Loss 51 kodek agarad tte teas 3 7 3 3 3 Processor and Clock Options rsereenereenneeenaeenneennneenneenae enne 3 7 3 3 3 1 Clock Spread Spectrum s 0ccisdas diecscsatewe vidas aueeeics se aed 3 7 3 3 3 2 Hardware Prefetcher Available when supported by the CPU mmmmeeemmeenne 3 7 3 3 3 3 Adjacent Cache Line Prefetch Available when supported by the CPU mimmeenmeeenne 3 7 3 3 3 4 L1 Data Prefetch Available when supported by the CPU 3 7 3 3 3 5 Data Reuse Optimization Available when supported by the CPU mmimmeenmmeenni 3 7 3 3 3 6 MPS and ACPI MADT Ordering mimteeteeenaeenneeneeee 3 8 3 3 3 7 Intel Virtualization Technology Available
117. ssword or Configure Advanced Boot Loader Options see Figure C 10 on page C 10 C 9 Themis Computer RES 12XR3 Installation Manual Configuration 7 Version 1 2 C 10 RED HAT ENTERPRISE LINUX 5 The GRUB boot loader will be installed on devisda No hoot loader will be installed You can configure the boot loader to boot other operating systems it will allow you to select an operating system to Boot feom the list To add additional operating systems which are not automatically detected click Add To change the operating system booted by default select Default by the desired operating system Default Labet Device Add Red Hat Enterprise Linux Server Mev VoiGroup00 Logvel00 Ealt Qelete A boot loader password prevents users from changing options passed to the kernel For greater system security it is recommended that you set a password Use a boot loader password Contigure advanced boot loader options B Retease Notes Back 4 Next Figure C 10 Setting Up Boot Loader To configure more advanced boot loader options such as changing the drive order or passing options to the kernel be sure Configure advanced boot loader options is selected before clicking Next Step 11 Now that you have chosen which boot loader to install you can also deter mine where you want the boot loader to be installed You may install the boot loader in one of two places The master boot record MBR This is t
118. stalled and remove the Phillips screw or tape holding the blank T O faceplate corresponding to the slot see Figure 2 8 2 Remove the blank I O faceplate corresponding to the slot Note Call Themis Technical Support if there is a question on how to secure the PCI I O faceplate to the rear I O panel 3 Carefully install each PCI card lower right card first into the appropriate slot until all expansion cards have been installed securing its I O faceplate to the rear I O panel if permitted with the Phillips screw or tape removed in Step 1 Secure the side edge of each card according to the following instructions e Left PCI Expansion Slot not used e Upper Right PCI Expansion Slot e Lower Right PCI Expansion Slot Figure 2 8 The RES 12XR3 has Three PCI Expansion Slots 2 9 Themis Computer RES 12XR3 Installation Manual Configuration 7 Version 1 2 Lower Right PCI Expansion Slot Themis has provided a pair of threaded standoffs to secure the card installed in the lower right PCI expansion slot to the motherboard Remove the standoff screws install the PCI card into the lower right slot and secure the PCI card with the standoff screws Upper Right PCI Expansion Slot After installing the upper right PCI expansion card install a PCI Retainer Clip two if necessary that was shipped with your order onto the edge of the PCI card see A Figure 2 9 on page 2 10 and slide it along the edge unt il it is positioned ove
119. structions on how to install configure power up and boot the Themis Rug ged Enterprise Server RES 12XR3 Configuration 7 see Figure 1 below which is based on two 64 bit Intel 5500 Series Xeon Ouad Dual Core CPUs or two Intel 5600 Series Xeon Ouad Six Core CPUs RES 12XR3 Configuration 7 supports one motherboard in a 20 deep chassis e SuperMicro X8DTU F A matrix describing 20 deep chassis configurations is given in Table 1 page xviii A matrix describing 17 deep chassi s configurations is givenin Table 2 on page xix _ n A ti TTT TTT TTT TEISS suagmaga Sse e TTT Punnnannnannanennasa aa Figure 1 Rugged Enterprise Server Model RES 12XR3 Themis Computer RES 12XR3 Installation Manual Configuration 7 Version 1 2 Table 1 RES x2XR3 20 Deep Chassis Manual Matrix CPU RES 32XR3 RES 22XR3 Re RES 12XR3 Category Motherboard Soc Manual Manual Manual kets Part Number Part Number Manual Part Number Part Number i X8DTH iF Configuration 1 2 116790 024 116789 024 X8DTH 6F X8DTi Configuration 2 X8DTi F 2 117022 024 117017 024 X8DTi LN4F X8DT3 Configuration 3 X8DT3 F 2 117023 024 117018 024 X8DT3 LN4F Configuration 4 X8DTN 2 117024 024 117019 024 Configuration 5 Gh 2 117025 024 117020 024 9 X8DA3 Configuration 6 X8DAH F 2 117026 024 117021 024 Configuration 7 X8DTU F 117280 024 116970 024 Naming Key X8Dvwxyz
120. t installation of Red Hat Enterprise Linux Server includes a set of software Applicable for general internet usage What additional tasks would you like your system to Include support for Software Development Web server You can further customize the software selection now or after install via the software management application Customize jater Customize now i eon n Figure C 16 Package Installation Default Screen Step 17 Select each component you wish to install Once a package group has been selected if optional components are available you can click on Optional packages to view which packages are installed by default and to add or remove optional packages from that group see Figure C 17 on page C 17 If there are no optional components this button will be disabled Themis Computer C Red Hat Enterprise Linux 5 Installation Installation RED HAT ENTERPRISE LINUX 5 Desktop Environments a GNOME Desktop Environment Applications igo KDE K Desktop Environment Development Servers Base System Languages GNOME is a powerful graphical user interface which includes a panel desktop system icons and a graphica file manager 32 of 36 optional packages selected Optional packages D Betease Notes agak Next Figure C 17 Optional Packages Click Next Step 18 Once you have selected the packag e groups of your choice you get one last chance to go back befo re starting
121. ter RES 12XR3 Installation Manual Configuration 7 Version 1 2 3 3 3 19 ACPI T State 3 3 4 3 3 4 1 3 3 4 2 3 3 4 3 3 3 4 4 Select Enabled to report processor throttling in the ACPI The options are Disabled default and Enabled Advanced Chipset Control The items included in the Advanced Settings submenu are listed below CPU Bridge Configuration e CPU Revision This item displays the CPU revision number e Current QPI Frequency This item displays the current CPU memory frequency e Memory Reference Code This item displays the memory reference code e QPI Reference Code This item displays the QPI reference code for the mother board Request Transaction ID Available for the Intel Xeon 5600 plat form only QuickPath Interconnect QPI is the conne ction between the CP Us and the I O hub JOH For a transaction to be processed in the QPI a Transaction ID is required and it is assigned by an agent CPU1 CPU2 or the IOH Each agent is allocated a number of Transaction IDs based on the QPI IO Bandwidth and the Request T rans action ID RTID setting 32 24 32 or 32 16 40 Once Transaction IDs are allocated to an agent it will assign a Transaction ID to an event so that it can be processed in the QPI Select Balanced to allocate transactions IDs to an agent based on the setting 32 24 32 Select IO Bias to allocate RTIDs based on the setting 32 16 40 The options are Balanced default and IO Bias
122. th th e coalesce feature which limits the pay load size to 128B while others witha payload size of 256B which inhibits the coalesce feature Please refer to your add on card user guide for the desired setting The options are 256B default and 128B SouthBridge Configuration 3 3 4 19 USB Functions This feature allows the user to enable or disable on board USB Support The options are Disabled and Enabled default 3 3 4 20 Legacy USB Support Select Enabled to use Legacy USB devices If this item is set to Auto Legacy USB support will be automatically enabled if a legacy USB device is installed on the motherboard and vise versa The settings are Disabled and Enabled default 3 3 4 21 Port 60h 64h Emulation Select Enabled to enable 60h 64h emulation for complete USB keyboard support for operating systems that are not compatib le with USB devices The options are Enabled and Disabled default 3 3 4 22 USB 2 0 Controller Available when USB Functions is Disabled This feature displays the current USB controller used in the motherboard 3 3 4 23 USB 2 0 Controller Mode This setting allows you to select the USB 2 0 Controller mode The options are Hi Speed 480 Mbps default and Full Speed 12 Mbps 3 13 Themis Computer RES 12XR3 Installation Manual Configuration 7 Version 1 2 3 3 4 24 BIOS EHCI Hand Off Select Enabled to enable BIOS Enhanced Host Controller Interface support to pro vide a workarou
123. the installation pr ocess Click Next if you re happy with your choices or click Back to make changes see Figure C 18 on page C 18 Themis Computer RES 12XR3 Installation Manual Configuration 7 Version 1 2 RED HAT ENTERPRISE LINUX 5 Click next to begin instaliation of Red Hat Enterprise Linux Server A complete fog of tne installation can be found in the file rootinstali iog after rebooting your system A kickstart file containing the Installation options selected can be found in the file root anaconda ks cfg after rebooting the system D Berease Notes as Figure C 18 Option to Review or Continue Click Next Step 19 Installation Starts see Figure C 19 RED HAT ENTERPRISE LINUX 5 installing gllb2 2 12 3 2 1 6 386 2 MB A library of handy utitity functions QD ketease Notes E l he Figure C 19 Installation Begins Themis Computer C Red Hat Enterprise Linux 5 Installation Installation Step 20 Congratulations Your Red Hat Enterprise Linux installation is now com plete The installation program prompts you to prepare your system for reboot Remember to remove any installation media if it is not ejected automatically upon reboot see Figure C 20 RED HAT ENTERPRISE LINUX 5 Congratulations the installation is complete Remove any media used during the Installation process and press the Reboot button to reboot your system Beie
124. the type of CPU used in the motherboard e Speed This item displays the speed of the CPU detected by the BIOS e Physical Count This item displays the number of processors installed in your system as detected by the BIOS Logical Count This item displays the number of CPU Cores installed in your system as detected by the BIOS System Memory This displays the memory size available in the system Themis Computer 3 BIOS Setup Utility 3 3 Advanced Setup Configurations Use the arrow keys to select Advanced Se ttings and hit lt Enter gt to access the sub menu items then select Boot Features BIOS SETUP UTILITY gt Boot Feature Figure 3 2 Advanced Settings 3 3 1 BOOT Features 3 3 1 1 Quick Boot If Enabled this option will skip certai n tests during POST to decrease the time needed for system boot The options are Enabled default and Disabled 3 3 1 2 Quiet Boot This option allows the bootup screen options to be m odified between POST mes sages or the OEM logo Sel ect Disabled to display the POST messages Select Enabled to display the OEM logo inst ead of the normal PO ST messages The options are Enabled default and Disabled 3 5 Themis Computer RES 12XR3 Installation Manual Configuration 7 Version 1 2 3 6 3 3 1 3 3 3 1 4 3 3 1 5 3 3 1 6 3 3 1 7 3 3 2 3 3 2 1 3 3 2 2 AddOn ROM Display Mode This sets the display mode for Option ROM The options are
125. tn Publications Department 21 SINSHL Reader Comment Card We welcome your comments and suggestions to help improve the RES 12XR3 Configuration 7 Installation Manual Please take time to let us know what you think ab out this manual Information provided in the manual wascomplete Agree Disagree __ Not Applicable Information was well documented and easy to follow Agree Disagree __ Not Applicable Information was easily accessible Agree Disagree __ Not Applicable The manual was useful Agree Disagree Not Applicable Please write down any comments you may have about this manual including how it can be improved Name Title Company Address
126. ts The RES 12XR3 supports one male DB9 serial port connector on the rear I O panel see Figure A 2 TTYA COM 1 Another serial port TTYB COM 2 is accessed from the motherboard COM 1 signal definitions are listed in Table A 3 page A 2 1 5 CA 6 9 Figure A 2 COM 1 Serial Connector Pinout Table A 3 COM 1 Serial Connector Signal Definitions Pin Signal Name Pin Signal Name Pin Signal Name 1 DCD 4 DTR 7 RTS 2 RXD 5 GND 8 CTS TXD 6 DSR 9 RI A 2 Themis Computer A Connector Pinouts A 4 Gigabit Ethernet LAN Ports The RES 12XR3 supports two RJ45 Gigabit Ethernet LAN port connectors LAN 1 and LAN 2 each with tw o embedded LEDs see Figure A 3 Pinout signal descriptions are listedin Table A 4 In addition an IPMI dedicated LAN port is located above on the rear I O panel above the two USB ports Link Speed Network Traffic Figure A 3 Ethernet Connector Type RJ45 Table A 4 RJ45 Ethernet Pinout Signals Pin Signal Name Pin Signal Name 1 TRDO 5 TRD2 2 TRDO 6 TRD2 3 TRD1 7 TRD3 4 TRD1 8 TRD3 e The color of the left LED indicates the LAN connection speed Off 10 MHz Green 100 MHz Amber 1 GHz e The right LED when lit indicates LAN activity network traffic Themis Computer A 3 RES 12XR3 Installation Manual Configuration 7 Version 1 2
127. ty Precautions Instructions regarding safety precautions during installation operation or maintenance of the equipment are given in the section entitled S afety Instructions on page iv WARNINGS and CAUTIONS The definitions of WARNINGS and CAUTIONS as used in this document are given in the Preface in the section entitled Notes Cautions Warnings and Sidebars Themis Customer Support North America South America and Pacific Rim Telephone 510 252 0870 Fax 510 490 5529 E mail support themis com Web Site http www themis com RES 12XR3 Installation Manual Configuration 7 Version 1 2 July 2011 Part Number 116970 024 RES 12XR3 Installation Manual Configuration 7 Version Revision History Nersiom ED ocd saeco ct tee ca wea eases aa idamaa iili Peds July 2011 e Added Appendix E Optional RES Audio USB Serial Port Module Updated Appendix F Repackaging Instructions to reflect new packaging Updated Appendix B Rack Mount Slide Installation to reflect current screw sizes and added part numbers for the hardware kits Version 21 ceed hele saiti gle kasta t iil ela March 2011 e Added RES Matrix tables 2 amp 3 to the Preface Updated maximum memory capacity throughout the manual related to the cur rent revision ofthe XSDTU F motherboard Updated information in Table 1 2 page 1 2 amp Table 1 7 page 1 15 added remarks regarding power supply module LED behavior in Sectio
128. uivas Plaksi pada alea uk 3 14 3 3 5 2 IDE Detect Timeout sec kasus suusad aa 3 15 3 3 5 3 Primary IDE Master Slave Secondary IDE Master Slave Third IDE Master and Fourth IDE Master e 3 15 Themis Computer Table of Contents 3 30 PCW PhP Configuration oi c 4 isu iirinn a aE saatana kuulen ean 3 17 2 3 Gul Clear NVRAM viereen iE n aE E e la 3 17 3 3 6 2 Plug amp Play OS iiaia ot unt ns EE 3 17 3 3 0 3 PCL Latency TIME monine a alu lane 3 18 3 3 6 4 PCI IDE BusMaster 31 4uases nkte taadea et veeta ina dan ko daa ea vakka ta e 3 18 3 3 6 5 SR 10V Supported aadlid 3 18 3 3 6 6 PCI E Slot from SXB1 PCI E Slot from SXB2 PCI E Slot from SXB3 sitesinin iinis asinis 3 18 3 3 6 7 Onboard LAN Option ROM Select teennmeenni 3 18 3 3 6 8 Load Onboard LAN1 Option ROM Load Onboard LANZ Optiot ROM nun aaa main E R 3 18 3 3 6 9 Boots Graphics Adapter Priority ermeaenn 3 18 3 3 7 Super IO Device Configuration as Mila aaa 3 19 3 3 7 1 Serial Port Address Serial Port2 Address 3 19 3 3 7 2 Serial Port 2 Attribute secuiesc aniona kala 3 19 3 3 8 Remote Access Configuration se sssessssessesesseesseessesresseesreserssressessrssees 3 19 3 3 9 JREMOL ACCESS kinina Juta A tatala elena 3 19 3 3 9 Hardware Health Event Monitoring itevereennneonneeneeenneena 3 20 3 3 91 CPU Ov rh at Alarm inan ua a aai EREE 3 20
129. ule that is easily installed in an available storage drive bay see Figure D 1 which shows the Remote On Off Switch installed in an RES 32XR3 FIO system RES 32XR3 FIO Remote On Off Switch Module Figure D 1 Remote On Off Switch Module D 1 Themis Computer RES 12XR3 Installation Manual Configuration 7 Version 1 2 The Remote On Off Switch module is installed after first removing one of the exist ing RES 12XR3 storage drives any except the boot drive then installing a cable with a standard male DB9 connector at one end and an On Of f switch an LED is optional at the other end When operational if the RES 12X R3 Configuration 7 is turned OFF pressing the remote switch ON will turn the system on D 2 Remote On Only Configuration When the Remote On Off Switch module is configured as an ON only device press ing the remote switch ON will turn the system on Turning the RES system off how ever requires pressing the ON OFF button that is located directly on the front of the RES 12XR3 chassis D 3 D 2 Ordering the Remote On Off Switch Because internal modifications must be made to the RES 12XR3 Configuration 7 in order to support the Remote On Off Switch module the module must be ordered and installed at the time your system is ordered Themis Computer Appendix Optional RES Audio USB Serial Port Module E 1 RES Audio USB Serial Port Custom Module Customers interested in adding
130. upply Locking Lever Phillips Screw Hole A for knurled captive screw Extraction Power Supply on power supply AC Outlet Locking Lever Handle locking bracket Figure 2 17 The RES 12XR3 Power Supply Locking Mechanism 3 Squeeze the locking lever toward the extraction handle and firmly pull the power supply from the chassis Caution When pulling the power supply from the chassis hold it at the bot tom to prevent it from falling and damaging the unit Themis Computer RES 12XR3 Installation Manual Configuration 7 Version 1 2 2 1 7 2 Installing a Power Supply Perform the following steps to install a power supply 1 Insert the replacement power supply into an empty slot with the power LED at the top see Figure 2 17 on page 2 17 2 Push the power supply carefully into its slot until itis firmly seated a click will be heard when the locking lever is securely fastened to the chassis 3 Replace and tighten the two captive screws to hold the power supply locking lever to the chassis see Figure 2 17 to secure both power supplies 2 18 Themis Computer 2 Installation and Operation Rack Mounts 2 2 Rack Mounts 2 2 1 Mounting Brackets The rack mount brackets flanges are used to secure the chassis to the 19 rack see Figure 2 18 Handles are used to pull the RE S 12XR3 from the rack when rack mount slides have been installed on the sides of the chassis see following section P
131. urces When this opti on is set to Disabled the serial port physi cally becomes unavailable Select 3F8 IRQ4 to allow the serial port to use 3F8 as its TO port address and IRQ 4 for the interrupt address The options for Serial Portl are Disabled 3F8 IRQ4 default 3E8 IRQ4 2E8 IRQ3 The options for Serial Port2 are Disabled 2F8 IRQ3 default 3E8 IRQ4 and 2E8 IRQ3 Serial Port 2 Attribute This feature allows the user to set COM2 as a normal serial port or a virtual COM port used for SOL Serial Over LAN The options are SOL default and COM Remote Access Configuration Remote Access This allows the user to enable the Remote Access feature The options are Enabled default and Disabled If Remote Access is set to Enabled default the following items will be displayed Serial Port Number This feature allows the user to decide which serial port to be used for Console Redi rection The options are COM 1 and COM 2 default Serial Port Mode This feature allows the user to set the serial port mode for Console Redirection The options are 115200 8 n 1 default 57600 8 n 1 38400 8 n 1 19200 8 n 1 and 9600 8 n 1 Flow Control This feature allows the user to set the flow control for Console Redirection The options are None default Hardware and Software Themis Computer 3 19 RES 12XR3 Installation Manual Configuration 7 Version 1 2 3 3 9 3 3 9 1 Redirection After BIOS POST Select
132. vanced Host Interface A Caution Take caution when using this function This feature is for advanced pro grammers only Themis Computer 3 BIOS Setup Utility 3 3 5 2 3 3 5 3 Advanced Setup Configurations SATA 2 Configuration Available when the option IDE is select ed Selecting Enhanced will set SA TA 2 to native SATA mode The options are Dis abled and Enhanced default IDE Detect Timeout sec Use this feature to set the time out valu e for the BIOS to detect the ATA ATAPI devices installed in the system The options are 0 sec 5 10 15 20 25 30 and 35 default Primary IDE Master Slave Secondary IDE Master Slave Third IDE Master and Fourth IDE Master These settings allow the user to set the parameters of the Primary IDE Master Slave Secondary IDE Master Slave Third and Fourth IDE Master slots Press lt enter gt to activate the following submenu screen for detailed options of th ese items Set the correct configurations accordingly The items included in the submenu are Type Use this item to select the type of device connected to the system The options are Not Installed Auto default CD DVD and ARMD LBA Large Mode LBA Logical Block Addressing is a method of addressing data on a storage drive In the LBA mode the maximum dive capacity is 137 GB For drive capacities over 137 GB your system must be equipped with a 48 bit LBA mode addressing support If not install a
133. ve sys tem cooling Select Full Speed FS to allow the onboard fans to run at full speed for Themis Computer 3 BIOS Setup Utility 3 3 9 5 3 3 10 Advanced Setup Configurations maximum cooling The FS setting is recommended for special system configuration or debugging Select Performance PF for better system cooling The PF setting is recommended for high power consuming and high density systems Select Bal anced BL for the onboard fans to run at a speed that will balance the needs between system cooling and power sa ving The BL setting is re commended for regular sys tems with nor mal hardware configurations Select Energy Saving ES for best power efficiency and maximum quietness The Options are Full Speed FS Perfor mance PF Balanced BL and Energy Saving ES as set by the configurations in this manual Voltage Monitoring CPU1 Vcore CPU2 Vcore CPU1 DIMM CPU2 DIMM 5V 5VSB 12V 12V 3 3Vcc 3 3VSB VBAT and Vtt ACPI Configuration Use this feature to configure Advanced Configuration and Power Interface ACPI power management settings for your system 3 3 10 1 High Performance Event Timer Select Enabled to activate the High Performance Event Timer HPET that produces periodic interrupts at a much higher frequency than a Real time Clock RTC does in synchronizing multimedia streams providing smooth playback and reducing the dependency on other timestamp calculation devices such
134. ximum Wet Bulb Operating e 163 C non condensing Non Operating e 180 C non condensing Altitude Operating e Oto 10 000 feet above sea level Non Operating e 0 to 40 000 feet above sea level a Specifications are dependent on the configurations in this manual 1 14 Themis Computer 1 Overview and Specifications 1 8 2 Electrical Specifications Table 1 7 lists the electrical specifications for the RES 12XR3 Table 1 7 RES 12XR3 Electrical Specifications Parameter Description AC 120 volts 750W DC 48 volts 750W DC 28 volts 500W Input Power typical e 420 watts typical e 420 watts typical 450 watts typical Input Current e 3 5 amperes 120 Vac e 13 5 amperes 48 Vdc 16 amperes 28 Vdc Input Frequency e 47 63 Hertz NA NA Input Voltage e 100 265 Vac internally fused e 40 72 Vdc internally fused e 18 36 Vdc internally fused Input VA Rating e 425 VA NA NA BTU Rating e 1447 BTU hour e 1447 BTU hour e 1447 BTU hour Power Factor e 0 99 NA NA Input Leakage Current e 3 5 mA NA NA Plug Type e IEC ea Typa 9 Y Typs SVS5 4 or equivalent SVS5 4 or equivalent a Does not include plug in PCI cards b NA Not Applicable 1 8 2 1 The RES 12XR3 operates with two N 1 System Power redundant power supplies of 750 watts capacity each that auto range si
135. xit 3 32 Index 2 Load Fail Safe Defaults 3 33 Load Optimal Defaults 3 33 Save Changes and Exit 3 32 hot keys 3 2 Introduction 3 1 Main BIOS Setup 3 3 System Overview 3 3 System Time System Date 3 3 Security Settings 3 28 Boot Sector Virus Protection 3 29 Change Supervisor Password 3 28 Change User Password 3 29 Clear User Password 3 29 Password Check 3 29 Supervisor Password 3 28 User Access Level 3 29 User Password 3 28 Starting the Setup Utility 3 2 BMC 1 8 BOOT Features AddOn ROM Display Mode 3 6 Bootup Num Lock 3 6 Hit Del Message Display 3 6 Interrupt 19 Capture 3 6 Quick Boot 3 5 Quiet Boot 3 5 Wait For F1 If Error 3 6 Boot Loader 3 20 Boot Settings 3 30 C Cautions xxiii CD RW DVD ROM drive 1 4 Chipset 1 4 COM1 COM2 serial port header 1 12 Comments xxii components major 1 4 Configuration system 2 21 Console Redirection 3 19 Contact Information 2 17 CPU temperature 1 6 Themis Computer Index CPU OH alarm 3 20 D DB9 A 2 DDR 1066 3 11 DDR 1333 3 11 DDR3 frequency 3 11 DDR 800 3 11 Device I O 3 12 Dimensions chassis 1 4 Direct I O VT d 3 12 DMAR ACPI Tables 3 12 DVI connector 2 21 E ECC SDRAM memory modules 2 4 2 5 Electrical Specifications 17 15 Electrostatic Discharge 1 16 EMI xxii Energy Saving ES 3 23 Environmental Specifications 1 16 Environmental Temperature Control 1 6 ESD grounding techniques 2 7 protected mat 2 7 Ethernet A 3 Event Log Configuratio

RES-12XR3 Installation Manual - Configuration 7

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