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Supermicro PDSBM-LN1 motherboard

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1. PIPIPIM CIO 29996 OOOO 6 9 9 6 9 49 Figure 2 3 Back Panel I O Port Locations and Definitions Back Panel Connectors OMAN DA AON gt Keyboard Purple PS 2 Mouse Green Back Panel USB Port 1 Back Panel USB Port 2 Back Panel USB Port 3 only Back Panel USB Port 4 only COM Port 1 Turquoise VGA Blue Gigabit LAN Port 1 0 Gigabit LAN Port 2 See Section 2 5 for details 2 6 SUPER 2 Chapter 2 Installation B Front Control Panel JF1 contains header pins for various buttons and indicators that are normally located on a control panel at the front of the chassis These connectors are de signed specifically for use with Super Micro server chassis See Figure 2 4 for the descriptions of the various control panel buttons and LED indicators Refer to the following section for descriptions and pin definitions Figure 2 4 JF1 Header Pins S tod Groun NMI X X HDD LED M EZEE NIC1 LED vec E JE ve ee ee ee ee ea NIC2 LED ee E 8 OH Fan Fail LED Vec Du a 2 Power Fail LED Vcc Ground Reset gt Reset Button Ground PWR gt Power Button 2 7 SUPER PDSBM LN1 PDSBM LN2 PDSBM LN2 User s Manual itions C Front Control Panel Pin Defin NMI Button
2. 2 2 7 C Front Control Panel Pin 2 8 NMI NEP TETTE 2 8 PWR LED ner ea ee n vey badeka y Sende n n WERE arene 2 8 HDD H E ENESE 2 9 NICGT NICZ LED Indicators s k ye dr nei Bee 2 9 OH Fan Fail 2 10 Pewer Fail LED reet kal kana Pn E Neda ei epo PR bae die be RO deas 2 10 Reset BUM OM E TOTO DID D 2 11 tenui ues ret 2 11 Table of Contents 2 6 Connecting Cables KE dak su ihe X ra n a tae 2 12 ATX Auxiliary Power Connectors k EEE k 2 12 Universal Serial BUS 2 13 Chassis ntFUSIOnDi oet 2 13 Rita Do DD mnn mn 2 14 ATX PS 2 Keyboard and PS 2 Mouse 2 15 PONS e EU 2 15 pm 2 16 VULP m r 2 16 GLAN1 GLAN2 2 17 Speaker CONNECIOM 2 17 2 7 Jumper Settings dn k n na 2 18 EXDlanatllon ofJump lS say coge cerea Dr eee n kin xin i k t 2 18 Enable Disable 2 18 CMOS Cle ae mm 2 19 Watch Dog Enable sa ka
3. 4 p 20 19 i N Groun NMI 5 x x E ru d Power LED NorthBridge ob 3 1 LED 8 XEWER NIC2 LED Vea ga E OH Fan Fail LED Vcc 5 Em n iN Ec 2 N B Reset gt Reset Button A s PWR Power Button N SUPER PDSBM LN1 PDSBM LN2 PDSBM LN2 User s Manual j ATX Power 24 pin C t ac Connecting a Pin Definition Pin Definition ATX Auxilary Power 13 3 3 3 3V Connectors 14 2 3 3V The 24 pin ATX main power connector 19 is located at 40 and 12V 8 16 22 power connector is located at J41 SOM the motherboard These power con 18 gt tov nectors meet the SSI EPS 12V speci 19 fication The 8 pin 12V PWR supply 20 8 PWR OK 9 is also required to provide adequate 21 SVSB power to the CPU See the table on 22 the right for pin definitions 23 24 12 33V 12V 12V Required Connection 12V 8 pin Power Con nector Pin Definitions Pins Definition 1 through 4 Ground 12V 5 through 8 Required Connection cm mi g One i x Super I O 5 5 Processor A 24 pin ATX PWR s 1 Intel 94662 B 8 pin Aux PWR ntel LANCTRL North Bridge sed P 9
4. SUPER PDSBM LN1 LN2 Possible System Memory Allocation amp Availability System Device Firmware Hub flash memory System BIOS Local APIC Area Reserved for the chipset APIC 4 Kbytes PCI Enumeration Area 1 PCI Express 256 MB Enumeration Area 2 if needed Size Physical Memory Remaining Available 4 GB Total System Memory 1 MB 4 2 256 MB 256 MB 4 KB 512 MB Aligned on 256 MB boundary VGA Memory TSEG 16 MB 1 Memory available to OS and other ap plications Figure 2 2 Installing and Removing DIMMs To Remove Use your thumbs to gently push the release tabs near both ends of the module This should release it from the slot Notch p Notch Note Notch should align with the receptive point on the slot To Install Insert module vertically and press down until it snaps into place Pay attention to the alignment notch at the bottom Top View of DDR2 U L Release Tab Release 2 5 SUPER PDSBM LN1 PDSBM LN2 PDSBM LN2 User s Manual 2 5 Control Panel Connectors IO Ports SUPER PDSBM LN LN2 The I O ports are color coded in conformance with the PC 99 specification See Figure 2 3 below for the colors and locations of the various I O ports A Back Panel Connectors IO Ports 9
5. JP3 8 A BIOS 7 e USB 7 8 USB 5 OR Buzzer ngpa B LSATAi I SATA3 un SPKR WoL 2x 0 u KSATAO I SATA2 2 21 SUPER PDSBM LN1 PDSBM LN2 PDSBM LN2 User s Manual CPU VRM Overheat LED Indicator LE2 CPU VRM Overheat LED A CPU VRM Overheat LED is located at LED Color Definition LE2 on the motherboard When the tem Off CPU VRM Temperature perature of CPU VRM is normal the CPU Normal VRM Overheat LED is off When the CPU CPU slows down VRM is over 90 C the CPU VRM Over heat LED will turn yellow and the CPU will slow down to prevent the CPU VRM from overheating See the layout below for the LED location POST Code LED Indicators LE3 1 4 POST Code LED Indicators LE4 LES Yellow On Green Off Yellow Off Green On POST Code Message Two POST Code LED Indicators are located at LE3 and LE4 on the motherboard These two LEDs are used to display POST Power On Self Test Code Messages through dif ferent sets of green and yellow light com binations Refer to the table on the right Yellow Off Green Off L for POST Code Messages See the layout below for the LED location Memory Initialization POST 28h System Shadowing POST 38h Yellow On Green On CPU Initialization POST 0Ah 2 Bin PWR FEM el A CPU VRM OH LED LE2 B
6. The non maskable interrupt button header is located on pins 19 and 20 of JF1 Refer to the table on the right for pin definitions Power LED The Power LED connection is located on pins 15 and 16 of JF1 Refer to the table on the right for pin definitions NMI Button Pin Definitions JF1 Pin Definition 19 Control Ground Power LED Pin Definitions JF1 Pin Definition 5V Ground A NMI B PWR LED t a 7 8 EW 20 19 288 i X X Grove LED 13 HDD LED E j NIC1 LED Vcc a MEA NIC2 LED z 2 ga 4 OH Fan Fail LED Vcc gt i Bes m 1 z Power Fail LED Vcc E s E Bg Reset gt Reset Button AS E HE j Ground PWR gt Power Button WOR a E i A Leto da 8 S M Chapter 2 Installation HDD LED The HDD LED connection is located on pins 13 and 14 of JF1 Attach a hard drive LED cable here to display disk activity for any hard drives on the system including SAS and Serial ATA See the table on the right for pin definitions NIC1 NIC2 LED Indicators For PDSBM LN2 LN2 only The NIC Network Interface Control ler LED connection for GLAN port is located on pins 11 and 12 of JF1 and for GLAN Port2 is on Pins 9 and 10 Attach a NIC LED c
7. TPM Enable South Bridge B 4 BIOS USB7 8 USB5 Buzzer a TSATAT 1 SPKR wd o m Chapter 2 Installation 2 8 Onboard Indicators Link Activity GLAN LEDs LED Two GLAN ports LAN 1 LAN 2 are located on the I O backpanel on the moth erboard Each Gigabit Ethernet LAN port has two LEDs The yellow LED indicates activity and the Link LED may be green amber or off to indicate the speed of the Color Status Definition connection See the tables at right for Active Flashing Active more information Back View When viewing from the back of the system GLAN Activity LED Indicator GLAN Link LED Indicator Note LAN 2 Port and the second LAN Controller are available on the PDSBM LN2 PDSBM LN2 only LED Color Definition Off No Connection or 10 Mbps Green On 100 Mbps Amber On 1 Gbps KB Mouse LE2 24 ATX PWR 8 pin PWR GLAN Port LEDs 123 7 COMT 95 JPL1 j Intel 94662 6 LAN GTRL North Bridge FP Control Floppy DIMM B d 3 ee ER 5 z JPL2 l 2 lo LANCTRL x 1 B Slot 6 PCI E x4 in x8 slot Slot 6 Expansion PCI 33 MHz o E od a Battery Q LES ICH7R E Slot 5 PCI 33 MHz ce 1 South Bridge JFC1 a 9 E
8. All Exit BIOS settings are described in this section Main Advanced Security TPM State Physical Presence operations Boot Item Specific Help Exit Discarding Changes Exit System Setup and Load Setup Defaults save your changes to Discard Changes 2 Save Changes CMOS Highlight this item and hit lt Enter gt to save any changes you have made and to exit the BIOS Setup utility Exit Discarding Changes Highlight this item and hit lt Enter gt to exit the BIOS Setup utility without saving any changes you may have made Load Setup Defaults Highlight this item and hit lt Enter gt to load the default settings for all items in the BIOS Setup These are the safest settings to use Discard Changes Highlight this item and hit lt Enter gt to discard cancel any changes you have made You will remain in the Setup utility Save Changes Highlight this item and hit lt Enter gt to save any changes you have made You will remain in the Setup utility 4 21 SUPER PDSBM LN1 PDSBM LN2 PDSBM LN2 User s Manual Notes 4 22 Appendix A BIOS POST Messages Appendix A BIOS POST Messages During Power On Self Test POST the BIOS will check for problems If a problem is found the BIOS will activate an alarm or display a message The following is a list of such BIOS messages Failure Fixed Disk Fixed disk is not working or not configured properly Check to see if fixed disk is at tached properly Run Setup Find o
9. Appendix BIOS POST Messages CPU ID CPU socket number for Multi Processor error EISA CMOS not writeable ServerBIOS2 test error Cannot write to EISA CMOS DMA Test Failed ServerBIOS2 test error Cannot write to extended DMA Direct Memory Access registers Software NMI Failed ServerBIOS2 test error Cannot generate software NMI Non Maskable Interrupt Fail Safe Timer NMI Failed ServerBIOS2 test error Fail Safe Timer takes too long Device Address Conflict Address conflict for specified device Allocation Error for device Run ISA or EISA Configuration Utility to resolve resource conflict for the specified device CD ROM Drive CD ROM Drive identified Entering SETUP Starting Setup program Failing Bits nnnn The hex number nnnn is a map ofthe bits atthe RAM address which failed the memory test Each 1 one in the map indicates a failed bit See errors 230 231 or 232 above for offset address of the failure in System Extended or Shadow memory Fixed Disk n Fixed disk n 0 3 identified Invalid System Configuration Data Problem with NVRAM CMOS data device IRQ conflict device IRQ conflict error A 3 SUPERO PDSBM LN1 PDSBM LN2 PDSBM LN2 User s Manual PS 2 Mouse Boot Summary Screen PS 2 Mouse installed nnnn kB Extended RAM Passed Where nnnn is the amount of RAM in kilobytes successfully tested nnnn Cache SRAM Passed Where nnnn is the amount of system cache in kilobyt
10. POST Code Message LED LE3 C POST Code Message LED LE4 H Intel 946GZ North Bridge FP Control DIMMA Floppy DIMMB n5 Fa LAN CTRL E 1 x Slot 6 PCI E x4 in x8 slot Slot 6 Expansion PCI 33 MHz E d HE a Battery ICH7R Slot 5 PGI 33 MHz i r JB South Bridge JFC1 a lg B JP3 C BIOS l amp USB 7 8 usB 5 WOR Buzzer USB 6 5 5 a SPKR a i n KSATAO 2 2 22 SUPER PDSBM LN1 LN2 Chapter 2 Installation 2 9 Floppy Drive and IDE Hard Drive Connections Note the following when connecting the floppy and hard disk drive cables The floppy disk drive cable has seven twisted wires Ared mark on a wire typically designates the location of pin 1 Asingle floppy disk drive ribbon cable has two connectors to provide for two floppy disk drives The connector with twisted wires always connects to drive A and the connector that does not have twisted wires always connects to drive 2 23 B Floppy Drive Connector Pin Definitions Floppy Floppy Connector Pin Definition Definition 1 Ground 2 FDHDIN The floppy connector is located at ET 4 m J22 See the table below for pin 5 Key 6 FDEDIN definitions 7 Ground 8 Index 9 Ground 10 Motor Enable 11 Ground 12 Drive Select B 19 Ground 14 Drive Select
11. Vcc to the table on the right for pin defini 5 roun tions A NIC1 LED B OH Fan Fail LED E DELI Heu ES 26 48 E i mm x x 8 Intl 94662 Power LED Vcc Brom North Bridge E HDD LED Vcc 3 NIC1 LED Vcc 4 DIMMA i i 2 LED x B J 2 Cnr Fail LED Vcc z la S om n xus Power Fail LED Vcc 5 x SIVE SES RN EE E Ground Reset gt Reset Button SE oS j EN 6 A Es DM 5 a Ground PWR gt Power Button P x wo e FSATAT FSATAS iE Chapter 2 Installation Reset Button Reset Button The Reset Button connection is located Pin Definitions JF1 on pins 3 and 4 of JF1 Attach it to the Pin Definition hardware reset switch on the computer 3 Reset case Refer to the table on the right for Ground pin definitions Power Button Power Button Pin Definitions JF1 The Power Button connection is located on pins 1 and 2 of JF1 Momentarily contacting both pins will power on off the system This button can also be con figured to function as a suspend button with a setting in the BIOS see Chapter 4 To turn off the power when set to suspend mode press the button for at least 4 seconds Refer to the table on the right for pin definitions Pin Definition 1 Signal GND A Reset B PWR Button 3 3 Fant P
12. a 9 JP3 5 BIOS 7 e N USB 7 8 5 OR Buzzer N mE usag ESATAT LSATA3 SPKR B amp a SATAO I SATA2 2 19 SUPER PDSBM LN1 PDSBM LN2 PDSBM LN2 User s Manual PCI PCI E Slots to SMB Speeds Jumper Setting Jumpers JI C1 JI C2 allow you to con nect PCI PCI Express slots to the System Management Bus The default setting is open to disable the connection See the table on the right for jumper settings Closed Open SMBus to PCI X PCI Exp Slots Jumper Settings Definition Enabled Disabled Default TPM Enable PDSBM LN2 only Jumper Setting Jumper JP3 allows you to enable or disable TPM Trusted Platform Module support The default setting is pins 1 2 to enable this function See the table on the right for jumper settings 1 2 2 3 24 Pin ATX PWR ci LE2 8 pin PWR B 5 8 Super VO I KB Mouse USB1234 Intel 94662 1222 North Bridge 46 DIMMA Floppy LAN2 DIMM B n5 Far 92 4 CTRL 4 D 5 Slot 6 PCI E x4 in x8 slot nd LES ICH7R Slot 5 PCI 33 MHz Slot 6 Expansion PCI 33 MHz IDE o 3 SUPER PDSBM LN1 LN2 SATA2 2 20 TPM Support Jumper Settings Definition Enabled Default Disabled gt N IN UJ N 2
13. including pre allocated fixed and DVMT memory to be used by the Internal Graphics Device The options are 64 MB 128 MB and 256 MB USB Function Select Enabled to enable the function of the USB devices specified The settings are Enabled and Disabled Legacy USB Support This setting allows you to enable support for the Legacy USB devices The settings are Enabled and Disabled 4 10 Chapter 4 BIOS gt Memory Cache Memory Cache This setting allows the user to enable or disable the functions of Memory Cache The options are Enabled and Disabled Cache System BIOS Area This setting allows you to designate a reserve area in the system memory to be used as a System BIOS buffer to allow the BIOS to write cache its data into this reserved memory area Select Write Protect to enable this function and this area will be reserved for BIOS ROM access only Select Uncached to disable this function and make this area available for other devices Cache Video BIOS Area This setting allows you to designate a reserve area in the system memory to be used as a Video BIOS buffer to allow the BIOS to write cache data into this reserved memory area Select Write Protect to enable the function and this area will be reserved for Video BIOS ROM access only Select Uncached to disable this function and make this area available for other devices Cache Base 0 512K If enabled this feature will allow the data stored in the base memory a
14. Browse CD Auto Start Up Next Time For more information please visit SUPERMICRO s web site SUPERMICRO Computer Inc Driver Tool Installation Display Screen Note Click the icons showing a hand writing on the paper to view the readme files for each item Click a computer icon to the right of an item to install an item from top to the bottom one at a time After installing each item you must re boot the system before proceeding with the next item on the list The bottom icon with a CD on it allows you to view the entire contents of the CD D 1 SUPER PDSBM LN1 PDSBM LN2 PDSBM LN2 User s Manual D 2 Configuring Supero Doctor III The Supero Doctor program is a Web base management tool that supports remote management capability It includes Remote and Local Management tools The local management is called the SD III Client The Supero Doctor program included on the CDROM that came with your motherboard allows you to monitor the environment and operations of your system Supero Doctor Ill displays crucial system information such as CPU temperature system voltages and fan status See the Figure below for a display of the Supero Doctor 111 interface Note 1 Both default user name and password are ADMIN 2 In the Windows OS environment the Supero Doctor Ill settings take pre cedence over the BIOS settings When first installed Supero Doctor Ill adopts the temperature threshold settings previously
15. CPU key which is the semi circle cutout below a golden dot against the socket key the Notch on the same side of the triangle cutout on the socket 6 Once aligned carefully lower the CPU straight down to the socket Do not drop the CPU on the socket Do not move the CPU horizontally or vertically Do not rub the CPU against the surface or against any pins of the Socket to avoid damage to the CPU or the socket 7 With the CPU inside the socket inspect the four corners of the CPU to make sure that the CPU is properly installed 8 Use your thumb to gently push the load lever down to the lever lock 9 If the CPU is properly installed into the socket the plastic PnP cap will be automatically released from the load plate when the load lever is pushed in the lever lock Remove the PnP cap from the motherboard Warning Please save the plastic PnP cap The motherboard must be shipped with the PnP cap properly installed to protect the CPU Socket pins Shipment without the PnP cap properly installed will cause damage to the socket pins 2 3 Chapter 2 Installation North Center Edge South Center Edge gold dot Socket Key Socket Notch CPU Key semi circle cutout below the circle Corner with a triangle cutout Plastic cap is released from the load plate if CPU properly installed SUPER PDSBM LN1 PDSBM LN2 PDSBM LN2 User s Manual 2 4 Installing DIMMs Note
16. Check the Super Micro web site for recommended memory modules CAUTION Exercise extreme care when installing or removing DIMM modules to prevent any possible damage Also note that the memory is interleaved to improve performance see step 1 DIMM Installation See Figure 2 2 1 Insert the desired number of DIMMs into the memory slots starting with DIMM A The memory scheme is interleaved so you must install both modules of memory at the same time beginning with DIMM A then Bank B 2 Insert each DIMM module vertically into its slot Pay attention to the notch along the bottom of the module to prevent inserting the DIMM module incorrectly 3 Gently press down on the DIMM module until it snaps into place in the slot Repeat for all modules see step 1 above Memory Support The PDSBM LN1 PDSBM LN2 PDSBM LN2 supports up to 4 GB Unbuffered Non ECC DDR2 533 667 in 2 DIMMs Populating DIMM modules with a pair of memory modules that are of the same size and of the same type in DIMM A and DIMM B will result in interleaved memory Notes 1 Due to the OS limitations some operating systems may not show more than 4 GB of memory 2 Due to memory allocation to system devices memory remaining available for operational use will be reduced when 4 GB of RAM is used The reduction in memory availability is disproportional Refer to the following Memory Availability Table for details 2 4 Chapter 2 Installation
17. HD HMRL72834971 1 MDC HD2588SD 81K HD 172834599 32 SCB HDC HD258H8JI WD HMAEH1376 185 232 9GB WD2588JI WD HMREH1449527 232 961 HD Configuration Utility SCSI BIOS 4 opuright 2883 Adapter Int All Reserved 444 Pres I f SISelect TM Utility yt Ch ID LUN b When you see the above screen press the Ctrl and the lt I gt keys simultane ously to have the main menu of the SATA RAID Utility appear Note All graphics and screen shots shown in the manual are for reference only The screen shots shown in the manual do not imply Supernicro s endorsement or non en dorsement on any 3rd party s product Your screens may or many not look exactly the same as the graphics shown in this manual C 3 SUPER PDSBM LN1 PDSBM LN2 PDSBM LN2 User s Manual Creating a RAID 0 Volume a Select Create RAID Volume from the main menu and press the lt Enter gt key The following screen will appear Intel R Matrix Storage Manager option ROM 55 1 1813 ICH R wRAIDS Copyright C 2883 85 Intel Corporation AIL Rights Reserved 1 1 Nane Volung RAID Level RAID Stripe Disks Select Disks Strip Size 128 Capacity 8 8 GB Create Volune Enter a string between 1 and 16 characters in length that can be used to uniquely identify the RAID volume This nane is case sensitive and can not contain special characters b Specify a name for the RAID 0 set and press the
18. Onboard COM A or Onboard COM B This setting can also be Disabled BAUD Rate This item allows you to set the BAUD rate for console redirection The options are 300 1200 2400 9600 19 2K 38 4K 57 6K and 115 2K Console Type This item allows you to set the console type for console redirection The options are VT100 VT100 8bit PC ANSI 7bit PC ANSI VT100 VT UTF8 and ASCII Flow Control This item allows you to select the flow control option for console redirection The options are None XON XOFF and CTS RTS Console Connection This item allows you to decide how console redirection is to be connected either Direct or Via Modem Continue CR after POST This item allows you to decide if you want to continue with console redirection after the POST routine The options are On and Off 4 15 SUPER PDSBM LN1 PDSBM LN2 PDSBM LN2 User s Manual gt Hardware Monitoring CPU Overheat Temperature This option allows the user to set a CPU temperature overheat threshold that will activate the alarm system when the CPU temperature reaches this pre set temperature threshold The options are 75 C 80 C 85 C and 90 C Note Highlight this and hit lt Enter gt to see monitor data for the following items CPU Temperature System Temperature Fan1 Fan5 Speeds If the feature of Auto Fan Control is enabled the BIOS will automatically display the status of the fans indicated in this item Fan Speed Control Modes
19. ROM Scan When enabled this setting will initialize the device expansion ROM The options are Enabled and Disabled Enable Master This setting allows you to enable the device specified as the bus master The options are Enabled and Disabled Latency Timer This setting allows you to set the clock rate for the Bus Master A high priority high throughout device may benefit from a greater clock rate The options are Default 0020h 0040h 0060h 0080h 00 0 00COh and OOEOh For Unix Novelle and other Operating Systems please select the option other If a drive fails after the installation of a new software please change this setting and try again A different OS requires a different Bus Master clock rate 4 12 Chapter 4 BIOS gt Onboard PCI Exp x1 GNIC2 For PDSBM LN2 LN2 Only Access the submenu for each of the settings above to make changes to the following PCI Express Port 6 GNIC2 Select Enabled to always enable PCI Ex1 Port 6 GNIC2 Select Disabled to disable PCI Ex1 Port 6 GNIC2 The options are Auto Enabled and Disabled Option ROM Scan When enabled this setting will initialize the device expansion ROM The options are Enabled and Disabled Enable Master This setting allows you to enable the device specified as the bus master The options are Enabled and Disabled Latency Timer This setting allows you to set the clock rate for the Bus Master A high priority high throughout dev
20. Tachometer Pulse Width Modulation 8 pin PWR Floppy i T 4 South Bridge JP3 5 51 BIOS 4 USB 5 OR m USB6 s SPKR L D 02 USB7 8 1 1 1 1 0 1 2 2 14 L Oe 1 oe A Fan 1 CPU Fan B Fan 2 C Fan 3 Chapter 2 Installation ATX PS 2 Keyboard and PS 2 Keyboard and PS 2 Mouse Ports uen Definitions The ATX PS 2 keyboard and the PS 2 Pin Definition mouse are located at J28 See the 1 Data table on the right for pin definitions 2 The mouse port is above the key 3 board port See the table on the right 4 for pin definitions 5 e Serial Ports 1 J31 is a connector located on the IO Backpanel and is a header located at J13 See the table on the right for pin definitions Pin Definition Pin Definition DSR RTS CTS RI Ground NC Pin 10 is available on COM2 only NC No Connection LE2 24 ATX PWR 8 pin PWR Super A Keyboard Mouse Intel 946GZ B COM1 2 Fan2 FP Control DIMMA N2 Floppy 5 4 n DIMM B amp JPL2 d LAN CTRL J Slot 6 PCI E x4 in x8 slot Slot 6 Expansion PCI 33 MHz E a Battery LE3 ICH7R Slot 5 PCI 33 MHz Jc South Bridge JPC1 a ig 8 BIOS e USB 7 8 USB 5
21. The following is a list of codes that may be written to port 80h POST Code Description 02h Verify Real Mode 03h Disable Non Maskable Interrupt NMI 04h Get CPU type 06h Initialize system hardware 07h Disable shadow and execute code from the ROM 08h Initialize chipset with initial POST values 09h Set IN POST flag OAh Initialize CPU registers OBh Enable CPU cache OCh Initialize caches to initial POST values OEh Initialize I O component OFh Initialize the local bus IDE 10h Initialize Power Management 11h Load alternate registers with initial POST values 12h Restore CPU control word during warm boot 13h Reset PCI Bus Mastering devices 14h Initialize keyboard controller 16h 1 2 2 3 BIOS ROM checksum 17h Initialize cache before memory Auto size B 1 SUPER PDSBM LN1 PDSBM LN2 PDSBM LN2 User s Manual POST Code Description 18h 8254 timer initialization 1Ah 8237 DMA controller initialization 1Ch Reset Programmable Interrupt Controller 20h 1 3 1 1 Test DRAM refresh 22h 1 3 1 3 Test 8742 Keyboard Controller 24h Set ES segment register to 4 GB 28h Auto size DRAM 29h Initialize POST Memory Manager 2Ah Clear 512 kB base RAM 2Ch 1 3 4 1 RAM failure on address line 2Eh 1 3 4 3 RAM failure on data bits xxxx of low byte of memory bus 2Fh Enable cache before system BIOS shadow 32h Test CPU bus clock frequency 33h Initialize Phoenix Dispatch Manager 36h Warm start shut down 38h Shadow system B
22. The options are 6MHz 8MHz 12MHz and 16MHz Serial Port A This setting allows you to configure Serial Port Asettings The options are Enabled user defined Disabled and Auto BIOS or OS controlled Base I O Address This setting allows you to select the base I O address for Serial Port A The options are 3F8 2F8 3E8 and 2E8 Interrupt This setting allows you to select the IRQ interrupt request for Serial Port A The options are IRQ3 and IRQ4 Serial Port B This setting allows you to configure Serial Port B settings The options are Enabled user defined Disabled Auto BIOS controlled and OS Controlled Mode This setting allows you to select the type of device that will be connected to Serial Port B The options are Normal IR for an infrared device and ASK_IR Base I O Address This setting allows you to select the base I O address for Serial Port B The options are 3F8 2F8 3E8 and 2E8 Interrupt This setting allows you to select the IRQ interrupt request for Serial Port B The options are IRQ3 and IRQ4 Floppy Disk Controller This setting allows you to configure Floppy Disk Controller settings The options are Enabled user defined Disabled and Auto BIOS and OS controlled 4 14 Chapter 4 BIOS gt Console Redirection Access the submenu to make changes to the following settings COM Port Address This item allows you to specify which COM port to direct the remote console to
23. This feature allows the user to decide how the system controls the speeds of the onboard fans The CPU temperature and the fan speed are correlative When the CPU on die temperature increases the fan speed will also increase and vice versa Select Workstation if your system is used as a Workstation Select Server if your system is used as a Server Select 3 pin if your chassis uses 3 pin fans Select 4 pin if your chassis uses 4 pin fans Select Disable to disable the fan speed control function and allow the onboard fans to constantly run at full speed 12V The Options are 1 Disable Full Speed 12V 2 3 pin Servers 3 3 pin Workstations 4 4 pin Servers and 5 4 pin Workstations Voltage Monitoring The following items will be monitored and displayed V CPU Vdimm 1 5V 3 3V 3 3V Standby 5V 12V Vbat Note In the Windows OS environment the Supero Doctor III settings take pre cedence over the BIOS settings When first installed Supero Doctor Ill adopts the temperature threshold settings previously set in the BIOS Any subsequent changes to these thresholds must be made within Supero Doctor since the SD III settings override the BIOS settings For the Windows OS to adopt the BIOS temperature threshold settings please change the SDIII settings to be the same as those set in the BIOS 4 16 Chapter 4 BIOS 4 5 Security Settings Choose the Security menu from the Phoenix BIOS Setup Utility with the arrow keys You sh
24. This product is intended to be professionally installed Manual Organization Chapter 1 describes the features specifications and performance of the mainboard and provides detailed information about the chipset Chapter 2 provides hardware installation instructions Read this chapter when installing the processor memory modules and other hardware components into the system If you encounter any problems see Chapter 3 which describes troubleshooting procedures for the video the memory and the system setup stored in CMOS Chapter 4 includes an introduction to BIOS and provides detailed information on running the CMOS Setup utility Appendix A provides BIOS POST Messages Appendix B lists BIOS POST Codes Appendix C and Appendix D list Software Installation Instructions Conventions Used in the Manual Special attention should be given to the following symbols for proper installation and to prevent damage done to the components or injury to yourself Gron PangeriCaution Instructions to be strictly followed to prevent catastrophic system failure or to avoid bodily injury Warning Important information given to ensure proper system installation or to prevent damage to the components Note Additional Information given to differentiate various models or provides inform ation for correct system setup SUPER PDSBM LN1 PDSBM LN2 PDSBM LN2 User s Manual Table of Contents Preface About This Manual 25 2 cc eire Cu
25. Two G bit Ethernet ports are located at JLAN1 and JLAN2 on the IO back plane This port accepts RJ45 type cables Note JLAN2 is for the PDSBM LN2 LN2 only Speaker Speaker Connector A Speaker Buzzer header J9 is located on the motherboard See Pin Setting Definition the table on the right for speaker pin Pins 3 4 definitions Note The speaker con Pins 1 4 nector pins are for use with an exter nal speaker If you wish to use the onboard speaker you should close Internal Speaker External Speaker pins 3 4 with a jumper KB Mouse 1 LE2 24 Pin ATX PWR 8 PWR xxi Super 1 0 T A GLAN1 1 6 PDSBM LN2 6 LANCIRL North Bridge N LN2 only B Speaker Buzzer Fan2 FP Control DIMMA Floppy DIMMB JPL2 LAN CTRL 1 Slot 6 PCI E x4 in x8 slot Slot 6 Expansion PCI 33 MHz IDE lt LES ICH7R Slot 5 PCI 33 MHz JBT1 H o 4 T South Bridge amp i x BIOS l 1 USB5 USB 6 users N 2 E 4 z m a En A 2 un Buzzer n x AT JWD 2 af 1 SUPER PDSBM LN1 PDSBM LN2 PDSBM LN2 User s Manual 2 7 Jumper Settings Explanation of Jumpers To modify the operation of the motherboard jumpers can be used to choose betw
26. Type This option allows the user to select the type of SATA drives The option Auto allows the BIOS to automatically set the SATA drive s capacity number of heads etc Enter a number from 1 39 to select a predetermined type of the HDD drive The option User will allow the user to enter the parameters of the HDD drive installed at this connection Select CDROM if a CDROM drive is installed Select ATAPI if a removable disk drive is installed Multi Sector Transfers This item allows the user to specify the number of sectors per block to be used for multi sector transferring The options are Disabled 4 Sectors 8 Sectors and 16 Sectors 32 Bit I O Select Enabled to enable the function of a 32 bit IDE data transfer The options are Enabled and Disabled LBA Mode Control This item allows the user to specify if the Phoenix BIOS will access the IDE Channel 0 Master Device via the LBA mode The options are Enabled and Disabled Transfer Mode This option allows the user to set the transfer mode The options are Standard Fast PIO1 Fast PIO2 Fast PIOS Fast PIO4 FPIO3 DMA1 and FPIO4 DMA2 Ultra DMA Mode This option allows the user to select the Ultra DMA Mode The options are Disabled Mode 0 Mode 1 Mode 2 Mode 3 Mode 4 and Mode 5 System Memory This item indicates the size of the system memory being detected in the system Extended Memory This item indicates the size of the extended memory being detected in the syst
27. byte Cache Line 36 bit host addressing decoding up to 4 GB of the CPU s memory address space allowing the processor to access the entire 4 GB of the GMCH s memory address space The GMCH also supports one or two channels of SDRAM and the PCI Express based graphics attached devices The Intel 946GZ platform supports the seventh generation I O Controller Hub Intel ICH7R to provide a multitude of I O related features The Direct Media Interface DMI provides the chip to chip connection between the GMCH and the ICH7R Intel I O Controller Hub 7R ICH7R The I O Controller ICH7R provides the data buffering and interface arbitration re quired for the system to operate efficiently It also provides the bandwidth needed for the system to maintain its peak performance The ICH7R supports PCI slots Serial ATA ports USB 2 0 ports and dual channel IDE devices Intel ICH7R System Features The I O Controller Hub provides the I O subsystem with access to the rest of the system The ICH7R supports the following Serial ATA SATA Controller with HostRAID support Advanced Configuration and Power Interface Version 2 0 ACPI Advanced Host Controller Interface AHCI Low Pin Count LPC Interface Serial Peripheral Interface SPI Compatibility Modules DMA Controller Timer Counter Interrupt Controller 1 9 SUPER PDSBM LN1 PDSBM LN2 PDSBM LN2 User s Manual 1 3 PC Health Monitoring This section describes the PC health moni
28. d 8 pin PWR A IDE m E Super 2 Processor Es SES _ Intel 946GZ 8 North Bridge VA DIMMA 5 4 e DIMMB E JPL2 1 z 4 LAN CTRL z j 5 a Slot 6 PCI E x4 in x8 slot Slot 6 Expansion PCI 33 MHz o od Battery Q LE3 ICH7R Slot 5 PCI 33 MHz 2 South Bridge BIOS gt ee Buker ee Uses Bee 2 24 Chapter 3 Troubleshooting 3 1 Chapter 3 Troubleshooting Troubleshooting Procedures Use the following procedures to troubleshoot your system If you have followed all of the procedures below and still need assistance refer to the Technical Support Procedures and or Returning Merchandise for Service section s in this chapter Always disconnect the AC power cord before adding changing or removing any hardware components a A N Before Power On Make sure that there are no short circuits between the motherboard and chas sis Disconnect all ribbon wire cables from the motherboard including those for the keyboard and mouse Remove all add on cards Install a CPU and heatsink making sure it is fully seated and connect the chassis speaker and the power LED to the motherboard Check all jumper settings as well Use the correct type of onboard CMOS battery as specified by the Manufacturer Do not install the CMOS battery upside down to av
29. lt Tab gt key or the lt Enter gt key to go to the next field You can use the lt Esc gt key to select the previous menu c When RAID Level item is highlighted press the lt Up Arrow gt lt Down Arrow gt keys to select RAID 0 Stripe and hit lt Enter gt d When the Disks item is highlighted press lt Enter gt to select the HDD to configure as RAID The following pop up screen the note Page C 3 displays e Use the Up Arrow gt Down Arrow keys to highlight a drive and press Space to select it A triangle appears to confirm the selection of the drive f Use the Up Arrow Down Arrow keys to select the stripe size ranging from 4 KB to 128 KB for the RAID 0 array and hit Enter Note For a server please use a lower stripe size and for a multimedia system use a higher stripe size The default stripe size is 128 KB g Press Enter when the Create Volume item is highlighted A warning message displays h When asked Are you sure you want to create this volume Y N press Y to create the RAID volume or type N to go back to the Create Volume menu C 4 Appendix Intel HostRAID Installation Guidelines Creating a RAID 1 Volume a Select Create RAID Volume from the main menu and press the lt Enter gt key The following screen will appear Intel R Matrix Storage Manager option ROM v5 1 8 1813 ICH R wRAIDS Copyright C 2483 85 Intel Corporation All Rig
30. ports a 2 channel UltraATA 100 Bus Master IDE controller PATA and four Serial ATA SATA ports The ICH7R supports the following PATA and SATA device con figurations Legacy mode and Native mode C 1 SUPER PDSBM LN1 PDSBM LN2 PDSBM LN2 User s Manual RAID Configurations The following types of RAID configurations are supported RAID 0 Data Striping this writes data in parallel interleaved striped sections of two hard drives Data transfer rate is doubled over using a single disk RAID1 Data Mirroring an identical data image from one drive is copied to another drive The second drive must be the same size or larger than the first drive RAID 10 Striping amp Mirroring RAID 0 and 1 schemes are combined without parity information to get the benefits of both RAID 5 both data and parity information are striped and mirrored across three or more hard drives Intel Matrix Storage The Intel Matrix Storage supported by the ICH7R allows the user to create RAID 0 and RAID1 set by using only two identical hard disk drives The Intel Matrix Storage Technology creates two partitions on each hard disk drive and generate a virtual RAIDO and RAID1sets It also allows you the change the HDD partition size without any data Configuring BIOS settings for SATA RAID Functions Native Mode 1 Press the Del key during system bootup to enter the BIOS Setup Utility Note If it is the first time powering on the system we reco
31. refer to the Manual Download area of the Super Micro web site lt http www supermicro com gt for any changes to the BIOS not reflected in this manual System BIOS The BIOS is the Basic Input Output System used in all IBM PC XT and PS 2 compatible computers The Phoenix BIOS stores the system parameters types of disk drives video displays etc in the CMOS The CMOS memory requires very little electrical power When the computer is turned off a backup battery pro vides power to the CMOS logic enabling it to retain system parameters Each time the computer is powered on the computer is configured with the values stored in the CMOS logic by the system BIOS which gains control at boot up How To Change the Configuration Data The CMOS information that determines the system parameters may be changed by entering the BIOS Setup utility This Setup utility can be accessed by pressing the Delete key at the appropriate time during system boot See below Starting the Setup Utility Normally the only visible POST Power On Self Test routine is the memory test As the memory is being tested press the Delete key to enter the main menu of the BIOS Setup utility From the main menu you can access the other setup screens such as the Security and Power menus Beginning with Section 4 3 detailed de scriptions are given for each parameter setting in the Setup utility Warning Do not shut down or reset the system whil
32. set in the BIOS Any subsequent changes to these thresholds must be made within Supero Doctor since the SD Ill settings override the BIOS settings For the Windows OS to adopt the BIOS temperature threshold settings please change the SDIII settings to be the same as those set in the BIOS Supero Doctor Ill Interface Display Screen l Health Information Edi View Favorites Tools Help E j E Health Information CPUl Chassis CPUZ Chassis D 2 Appendix D Software Installation Instructions Supero Doctor Interface Display Screen ll Remote Control File Edt View Favorites Tools Help ae HET Super rr Remote Manage System Info Health Info Performance Remote Control Configuration Administration System gement Report Help Remote Control Graceful power control Supero Doctor III allows a user to inform the OS to reboot or shut down within a specified time the default is 30 seconds Before the system reboots or shuts down it s allowed to cancel the action Requirements Keep Supero SD3Service Daemon running at all times on this system Provide TCP IP connectivity Power control si Note SD III Software Revision 1 0 be downloaded from our Web site at ftp ftp supermicro com utility Supero Doctor 111 You can also download User s Guide at http Awww supermicro com PRODUCT Manuals SDIII UserGuide pdf For Linux we will
33. with selection All information related to TPM Support will be erased SUPER PDSBM LN1 PDSBM LN2 PDSBM LN2 User s Manual 4 7 Boot Settings Choose the Boot menu from the Phoenix BIOS Setup Utility with the arrow keys You should see the following display See details on how to change the order and specs of boot devices in the Item Specific Help window All Boot BIOS settings are described in this section Boot Boot Priority Order Excluded from Boot Orders The devices included in the boot list section above are bootable devices listed in the boot order sequence as specified The boot functions for the devices included in the candidate list are currently disabled Use a lt gt key or a lt gt key to move the device up or down Use the lt f gt key or the lt r gt key to specify the type of an USB device either fixed or removable You can select one item from the boot list and hit the x key to remove it from the boot list to make its resource available for other bootable devices Subsequently you can select an item from the candidate list and hit the x key to remove it from the candidate list and put it in the boot list This item will then become bootable See details on how to change the boot order of a device in the Item Specific Help window 4 20 Chapter 4 BIOS 4 8 Exit Choose the Exit menu from the Phoenix BIOS Setup Utility main menu with the arrow keys You should see the following display
34. 13 ICH R wRAIDS Copyright C 2883 85 Intel Corporation Rights Reserved n q Nane VolunS RAID Level RAIDS Parity Disks Select Disks Strip Size 64 KB Capacity GB Create Volune Enter a string between 1 and 16 characters in length that can be used to uniquely identify the RAID volume This nane is case sensitive and can not contain special characters b Specify a name for the RAID 5 set and press lt Enter gt c When the Raid Level is highlighted use the lt Up Arrow gt lt Down Arrow gt keys to select RAID 5 Parity and hit lt Enter gt d When the Disk item is highlighted press lt Enter gt to select the HDD to configure as RAID The following pop up screen the note Page C 3 displays e Use the lt Up Arrow gt lt Down Arrow gt keys to highlight a drive and press lt Space gt to select it A triangle appears to confirm the selection of the drive f Use the lt Up Arrow gt lt Down Arrow gt keys to select the stripe size ranging from 4 KB to 128 KB for the RAID 5 array and hit lt Enter gt For a server please use a lower stripe size and for a multimedia system use a higher stripe size The default stripe size is 128 KB g Enter your desired RAID volume capacity and press lt Enter gt when the capacity item is highlighted The default setting is the maximum capacity allowed h Press Enter when the Create Volume item is highlighted
35. 6 Mb 512 Mb 1 Gb technologies for x8 and x16 devices Supports up to 32 simultaneous open page per channel Supports the opportunistic refresh scheme and a memory thermal management to monitor reads and or writes Supports improved flexible memory architecture Chipset Latest Intel chipset technology Intel 946GZ GMCH North Bridge ICH7R South Bridge Expansion Slots One 1 PCI Express x4 in a x8 Slot Slot 6 J10 Two 2 32 bit PCI 33MHz Slot 5 PCI1 and Slot 6 PCI2 BIOS 8 Mb Firmware Hub Phoenix BIOS Flash BIOS e DMI 2 3 PCI 2 2 ACPI 1 0 2 0 Hardware BIOS virus protection SMBIOS 2 3 and Plug and Play PnP PC Health Monitoring Onboard voltage monitors for CPU core Memory Voltage Chipset Voltage 1 8V 3 3V 3 3V standby 5V 5V Standby VBat and 12V Fan status monitor with firmware 4 pin Pulse Width Modulation and 3 pin Ta chometer fan speed control Low noise fan speed control CPU 4 Phase switching voltage regulator SuperoDoctor Ill Watch Dog NMI Power up mode control for recovery from AC power loss temperature sensing logic 1 6 Chapter 1 Introduction CPU System overheat LED and control e System resource alert via Supero Doctor CPU Thermal Trip support Thermal Monitor 2 TM2 support Platform Environment Configuration Interface support ACPI Features Slow blinking LED for suspend state indicator Main switch over
36. A warning message displays h When asked Are you sure you want to create this volume Y N press Y to create the RAID volume or type N to go back to the Create Volume menu C 7 SUPER PDSBM LN1 PDSBM LN2 PDSBM LN2 User s Manual Deleting RAID Volume N Warning Be sure to back up your data before deleting a RAID set You will lose all data on the disk drives when deleting a RAID set a From the main menu select item2 Delete RAID Volume and press lt Enter gt b Use the Up Arrow Down Arrow keys to select the RAID set you want to delete and press Del A Warning message displays c When asked Are you sure you want to delete this volume Y N press Y to delete the RAID volume or type N to go back to the Delete Volume menu C 8 Appendix Intel HostRAID Installation Guidelines Resetting to Non RAID and Resetting a RAID HDD Warning Be cautious when you reset a RAID volume HDD to RAID or Resetting a RAID HDD Resetting a RAID volume HDD or Resetting a RAID HDD will reformat the HDD and delete all internal RAID structure on the drive a From the main menu select item3 Reset Disks to Non RAID and press lt Enter gt The following screen will appear ation All Right Create RAID Volum Port Drive Select the disks that should be reset 11 Previous Next SPACE Selects ENTER Selection Complete b Use the lt U
37. AN2 Port and the second LAN Controller are available on the PDSBM LN2 PDSBM LN2 only Trusted Platform Modules Support is available on the PDSBM LN2 only To use this feature please enable TPM support in the BIOS 1 4 Chapter 1 Introduction PDSBM LN1 PDSBM LN2 PDSBM LN2 Quick Reference Jumpers Description Default Setting JBT1 CMOS Clear See Chapter 2 Ji c4 JI2C2 SMB to PCI Slots Open Open Disabled PDSBM LN2 7 Only Trusted Platform Module Ena Pins 1 2 Enabled JPL1 JPL2 Giga bit LAN1 LAN2 Enable Pins 1 2 Enabled JWD Watch Dog Timer Out Option Pins 1 2 Reset Connectors Description ATX PWR J40 ATX 24 Pin Power Connector 8 Pin ATX PWR J41 12V 8 pin Power Connector required Buzzer SPKR1 Internal Buzzer Chassis Intrusion JL1 gt Chassis Intrusion Header J31 COM2 J13 COM Port Serial Port 1 amp Port 2 Connectors DIMMA DIMMB DIMM1 2 Memory DIMM Slot A Slot B Fans 1 5 Fan1 CPU Fan Fans 2 5 Chassis Fan Headers Floppy J22 Floppy Disk Connector FP Control Panel JF1 Front Control Panel Header LAN 1 LAN2 JLAN1 JLAN2 Ethernet RJ45 Gigabit LAN Ports 1 2 See Below IDE J4 IDE Hard Drive I SATA 0 3 J2 J5 J6 J14 Intel SATA 0 1 2 3 Headers KB Mouse J28 PS 2 Keyboard Mouse Slot 5 PCI1 PCI 33 MHz Slot Slot 6 J10 PCI Express x4 in a x8 slot Slot 6 Expansion PCI2 PCI 33 MHz Slot Speaker J9 Speaker Header USB 1 2 J15 Back Panel Universal Se
38. B 15 Ground 16 Motor Enable Ag Ground 18 DIR 19 Ground 20 STEP 21 Ground 22 Write Data 23 Ground 24 Write Gate 25 26 Track 00 27 Ground 28 Write Protect 29 Ground 30 Read Data 31 Ground 32 Side 1 Select 33 Ground 34 Diskette 3 Fant E O ke Intel 94662 A Flo 5 em 5 Dimma JPL2 LAN CTRL s j a m Slo 6 d so Slt 6 Expansion MHZ o 8 Battery a i LES ICHTR 1 p T South Bridge M zd d 20 a m n mens d SUPER PDSBM LN1 PDSBM LN2 PDSBM LN2 User s Manual IDE Connector IDE Connector Pin Definitions An IDE Connector is located at J4 on Pin Definition Pin Definition the motherboard See the table on the m right for pin definitions 5 ves 5 Host Data 6 6 Host Data 9 7 Host Data 5 8 Host Data 10 9 Host Data 4 10 Host Data 11 11 Host Data 3 12 Host Data 12 13 Host Data 2 14 Host Data 13 15 Host Data 1 16 Host Data 14 Ag Host Data 0 18 Host Data 15 19 Ground 20 Key 21 DRQ3 22 Ground 23 Write 24 Ground 25 Read 26 Ground 27 IOCHRDY 28 BALE 29 DACK3 30 Ground 31 IRQ14 32 1085816 33 Addr1 34 Ground 35 36 Addr2 37 Chip Select 0 38 Chip Select 1 39 Activity 40 Ground 41 Vcc 42 Vcc 43 Ground 44 No Connection 5 24 Pin ATX PWR
39. County in the State of California USA The State of California County of Santa Clara shall be the exclusive venue for the resolution of any such disputes Super Micro s total liability for all claims will not exceed the price paid for the hardware product FCC Statement This equipment has been tested and found to comply with the limits for a Class A digital device pursuant to Part 15 of the FCC Rules These limits are designed to provide reasonable protection against harmful interference when the equipment is operated in a commercial environment This equipment generates uses and can radiate radio frequency energy and if not installed and used in accordance with the manufacturer s instruction manual may cause harmful interference with radio communications Operation of this equipment in a residential area is likely to cause harmful interference in which case you will be required to correct the interference at your own expense California Best Management Practices Regulations for Perchlorate Materials This Perchlorate warning applies only to products containing CR Manganese Dioxide Lithium coin cells Perchlorate Material special handling may apply See www dtsc ca gov hazardouswaste perchlorate WARNING Handling of lead solder materials used in this product may expose you to lead a chemical known to the State of California to cause birth defects and other reproductive harm Manual Revision 1 0a Release Date Aug 1 2007 U
40. D Front Panel USB 7 8 Chassis Intrusion Fan2 FP Control DIMMA Floppy DIMM qe 5 Slot 6 PC E x4 in x8 slot Slot 6 Expansion PCI 33 MHz IDE p LES ICH7R SUPER PDSBM LN1 LN2 Slot 5 PCI 33 MHz JBT1 4 South YD BIOS 5 JWD GC LSATAO I SATA2 2 13 SUPER PDSBM LN1 PDSBM LN2 PDSBM LN2 User s Manual KB Mouse 0581234 Fan Headers The PDSBM LN1 PDSBM LN2 PDS BM LN2 has five chassis system fan headers Fan1 to Fan5 including a CPU Fan Fan 1 Note Pins 1 3 of 4 pin fan headers are backward compatible with the traditional 3 pin fans See the table on the right for pin definitions onboard fan speeds are controlled by Thermal Manage ment via Hardware Monitoring in the Advanced Setting Note The Manu facturer Default is set to Disabled to allow the fans to constantly run at full speed When using Thermal Manage ment setting please use all 3 pin fans or all 4 pin fans on the motherboard 4 LE2 24 Pin ATX PWR Super l O Intel 94662 North Bridge DIMMA DIMMB 7 5 LAN CTRL Slot 6 PCI E x4 in x8 slot Slot 6 Expansion PCI 33 MHz pU LE3 ICH7R Slot 5 PCI 33 MHz Fan Header Pin Definitions Fan1 8 Pin Definition Ground 12V
41. DIMMA 5 8 a P 3 a DIMMB N z JPL2 E 2 o W LANCTRL J z 1 Slot 6 PCI E x4 in x8 slot Slot 6 Expansion PCI 33 MHz 2 nd E Battery E LES ICH7R 4 JBT1 e Slot 5 PCI 33 MHz t e South Bridge J C1 j ad Ig m JP3 x BIOS USB 7 8 Li usB 5 OR a 5 N i SPKR t o KSATAO SATA2 2 12 Universal Serial Bus USB Four USB 2 0 Universal Serial Bus ports Ports 1 2 3 4 are located on the I O Backplane and two USB headers USB 7 8 J44 can be ac cessed from the front panel In addi tion two USB Ports USB 5 J49 and USB 6 J48 are designed for internal use only Please note that USB 3 4 USB5 and USB 6 are for OEM only Chapter 2 Installation Back Panel USB Front Panel USB Pin Definitions USB4 USB6 8 Definition See the tables on the right for pin 45V definitions 2 PO 2 PO 3 3 PO 4 Ground 4 Ground Chassis Intrusion 5 Key 5 No connection A Chassis Intrusion header is located at JL1 on the motherboard Attach an appropriate cable from the chassis to inform you of a chassis intrusion when the chassis is opened LE2 24 Pin ATX PWR Super I O 5 Pin Definition Intrusion Input 5 Back panel USB Ports e 1213 4 1 Front panel USB 5 B C Front Panel USB 6
42. F2 gt to enter Setup Optional message displayed during POST Can be turned off in Setup PS 2 Mouse PS 2 mouse identified Run the 120 Configuration Utility One or more unclaimed block storage devices have the Configuration Request bit set in the LCT Run an 120 Configuration Utility e g the SAC utility System BIOS shadowed System BIOS copied to shadow RAM UMB upper limit segment address nnnn Displays the address nnnn of the upper limit of Upper Memory Blocks indicating released segments of the BIOS which can be reclaimed by a virtual memory man ager Video BIOS shadowed Video BIOS successfully copied to shadow RAM A 5 SUPER PDSBM LN1 PDSBM LN2 PDSBM LN2 User s Manual Notes A 6 Appendix BIOS POST Codes Appendix B BIOS POST Codes This section lists the POST Power On Self Test codes for the Phoenix BIOS POST codes are divided into two categories recoverable and terminal Recoverable POST Errors When a recoverable type of error occurs during POST the BIOS will display an POST code that describes the problem It may also issue one of the following beep codes 1 long and two short beeps video configuration error 1 repetitive long beep no memory detected Terminal POST Errors If a terminal type of error occurs the BIOS will shut down the system Before doing so it will write the error to port 80h attempt to initialize video and write the error in the top left corner of the screen
43. IOS ROM 3Ah Auto size cache 3Ch Advanced configuration of chipset registers 3Dh Load alternate registers with CMOS values 41h Initialize extended memory for RomPilot optional 42h Initialize interrupt vectors 45h POST device initialization 46h 2 1 2 3 Check ROM copyright notice 48h Check video configuration against CMOS 49h Initialize PCI bus and devices 4Ah Initialize all video adapters in system 4Bh QuietBoot start optional 4Ch Shadow video BIOS ROM 4Eh Display BIOS copyright notice 4Fh Initialize MultiBoot 50h Display CPU type and speed 51h Initialize EISA board optional 52h Test keyboard 54h Set key click if enabled 55h Enable USB devices 58h 2 2 3 1 Test for unexpected interrupts 59h Initialize POST display service Display prompt Press lt ESC gt to enter SETUP 5Bh Disable CPU cache B 2 Appendix BIOS POST Codes POST Code Description 5Ch 60h 62h 64h 66h 67h 68h 69h 6Ah 6Bh 6Ch 70h 72h 76h 7Ch 7Dh 7Eh 80h 81h 82h 83h 84h 85h 86h 87h 88h 89h 8Ah 8Bh 8Ch 8Fh 90h 91h 92h 93h 95h 96h 97h 98h Test RAM between 512 and 640 kB Test extended memory Test extended memory address lines Jump to UserPatch1 Configure advanced cache registers Initialize Multi Processor APIC Enable external and CPU caches Setup System Management Mode SMM area Display external L2 cache size Load custom defaults optional Display shadow area message Display er
44. LN2 User s Manual Chapter 4 BIOS 4 1 a as A 4 1 4 2 Running 4 2 4 3 BIOS Setup cete the a 4 2 4 4 Advanced 4 6 4 5 Security Setup d bana a ARX ER ORA RENE EXE W dde 4 17 4 5 nto eee ENSE IULII MI UDINE CE 4 19 4 7 BOOt S tU su i 4 20 Tcr 4 21 Appendices Appendix A BIOS POST A 1 Appendix BIOS POST Codes iier erc b y si ER EXE B 1 Appendix C Intel HostRAID Setup 2 C 1 Appendix D Software Installation 9 22 D 1 vi Chapter 1 Introduction Chapter 1 Introduction 1 1 Overview Checklist Congratulations on purchasing your computer motherboard from an acknowledged leader in the industry Super Micro boards are designed with the utmost attention to detail to provide you with the highest standards in quality and performance Please check that the following items have all been included with your motherboard If anything listed here is damaged or missing contact your retailer All Included in the Retail Box Only One 1 Super Micro Mainboard Four 4 SA
45. MHz gt gt 3 gt UNBUFFER ONLY INTEGRATED DIMM CHA GRAPHIC DDR2 667 533 4 j DIMM_CHB PCI Exp 82573 LAN Riser Slot PCIE x1 82573 LAN 4x SATAII LS ATA 300 ICH 7R PD sBM LN2 PORTS 4x USB2 0 B2 0 SPI PORTS ET D gt 32BIT SLOT E PCI2 o RISER SLOT W83627DHG IDE LPC I O PS2 KB MS SER 1 2 Figure 1 3 The 946GZ Chipset System Block Diagram Note This is a general block diagram and may not exactly represent the features on your motherboard See the following pages for the actual specifications of each motherboard Chapter 1 Introduction 1 2 Chipset Overview The Intel 82946GZ chipset designed for use with the Intel Xeon 3000 Series Core 2 Duo processor and Pentium D Pentium 4 Processor in desktop platforms contains two components GMCH North Bridge and ICH7R South Bridge The GMCH is used for the host bridge and the ICH7R for the I O subsystems Graphics Memory Controller Hub GMCH The GMCH manages the data flow between its four interfaces the processor interface FSB the system memory interface DRAM controller the integrated graphics interface the External Graphics interface and the I O Controller through DMI interface It provides bus arbitration between the four interfaces when each initiates transactions The processor interface supports the Pentium 4 subset of the Extended Mode of the Scalable Bus Protocol The GMCH supports a 64
46. Multi Processor Initialize OEM special code Initialize PIC and DMA Initialize Memory type Initialize Memory size Shadow Boot Block System memory test Initialize interrupt vectors Initialize Run Time Clock Initialize video Initialize System Management Manager Output one beep Clear Huge Segment Boot to Mini DOS Boot to Full DOS If the BIOS detects errors on 2C 2E or 30 base 512K RAM error it displays an additional word bitmap xxxx indicating the address line or bits that have failed For example 2C 0002 means address line 1 bit one set has failed 2E 1020 means data bits 12 and 5 bits 12 and 5 set have failed in the lower 16 bits The BIOS also sends the bitmap to the port 80 LED display It first displays the checkpoint code followed by a delay the high order byte another delay and then the low order byte of the error It repeats this sequence continuously B 5 SUPER PDSBM LN1 PDSBM LN2 PDSBM LN2 User s Manual Notes B 6 Appendix Intel HostRAID Installation Guidelines Appendix C Intel HostRAID Installation Instructions After all the hardware has been installed you must first configure Intel s ICH7R SATA RAID before you install the Windows Operating System and other software drivers Important Notes to the User Note 1 If you do not wish to configure onboard SATA RAID functions please go directly to Section C 2 and Appendix D for the Operating System amp Other Software Insta
47. OR Buzzer n FSATAT LSATA3 ISPKR B H LSATAO SATA2 2 15 SUPER PDSBM LN1 LN2 SUPER PDSBM LN1 PDSBM LN2 PDSBM LN2 User s Manual Wake On Ring Wake On Ring The Wake On Ring header is des Pin Definitions ignated JWOR This function allows Pin Definition your computer to receive and be 1 Ground awakened by an incoming call to the modem when the system is in the suspend state See the table on the right for pin definitions You must have a Wake On Ring card and cable to use this feature Wake On LAN Wake On LAN The Wake On LAN header is located pin at JWOL on the motherboard See the wel table on the right for pin definitions Pin Definition You must also have a LAN card with 1 5V Standby a Wake On LAN connector and cable 2 Ground to use this feature Wake up a 2 24 Pin ATX PWR x NM 8 pin PWR Em A WOR 8 North Bridge LANI 8 8 amp DIMMA Floppy LAN L DIMMB an5 F JPL2 LAN CTRL 5 Slot 6 PCI E x4 in x8 slot Slot 6 Expansion PCI 33 MHz bd Battery LE3 ICH7R Slot 5 PCI 33 MHz i South Bridge amp BIOS USB 7 8 e USB 5 l zzer n KSATAi 5 SUPER PDSBM LN1 LN2 0a _ 1 2 Chapter 2 Installation LAN 1 LAN 2 Giga bit Ethernet Ports
48. REFER iii Manual Organization iii Conventions Used in the aa iii Chapter 1 Introduction ME OTI MEL 1 1 DUM 1 1 Contacting Super 0000 0000001 1 2 SUPER PDSBM LN1 PDSBM LN2 PDSBM LN2 Image 1 3 SUPER PDSBM LN1 PDSBM LN2 PDSBM LN2 Layout 1 4 SUPER PDSBM LN1 PDSBM LN2 PDSBM LN2 Quick Reference 1 5 Motherboard 1 6 Intel 94662 Chipset System Block Diagram 1 8 122 Chipset OVOIVIOW iiri reve ka rege veh hehe k eontra sani de n ens 1 9 1 3 PC Health Monitoring anata 1 10 1 4 Power Configuration Settings 2 1 10 159 Y DY SN Ya MR RE 1 11 EMEN OM v n 1 12 Chapter 2 Installation 2 1 Static Sensitive Devices 2 1 2 2 Motherboard Installation 2 1 2 3 Processor and Heatsink Installation 2 2 2 2 4 Installing DDR2 Memory 2 4 2 5 Control Panel 2 6 A Back Panel Connectors lO 2 6 B Front Control
49. SUPERO SUPERO PDSBM LN1 SUPERO PDSBM LN2 SUPERO PDSBM LN2 USER S MANUAL Revision 1 0a The information in this User s Manual has been carefully reviewed and is believed to be accurate The vendor assumes no responsibility for any inaccuracies that may be contained in this document makes no commitment to update or to keep current the information in this manual or to notify any person or organization of the updates Please Note For the most up to date version of this manual please see our web site at www supermicro com SUPER MICRO COMPUTER reserves the right to make changes to the product described in this manual at any time and without notice This product including software if any and documenta tion may not in whole or in part be copied photocopied reproduced translated or reduced to any medium or machine without prior written consent IN NO EVENT WILL SUPER MICRO COMPUTER BE LIABLE FOR DIRECT INDIRECT SPECIAL INCIDENTAL SPECULATIVE OR CONSEQUENTIAL DAMAGES ARISING FROM THE USE OR INABILITY TO USE THIS PRODUCT OR DOCUMENTATION EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGES IN PARTICULAR SUPER MICRO COMPUTER SHALL NOT HAVE LIABILITY FOR ANY HARDWARE SOFTWARE OR DATA STORED OR USED WITH THE PRODUCT INCLUDING THE COSTS OF REPAIRING REPLACING INTEGRATING INSTALLING OR RECOVERING SUCH HARDWARE SOFTWARE OR DATA Any disputes arising between manufacturer and customer shall be governed by the laws of Santa Clara
50. TA cables CBL 0044L One 1 IDE hard drive cable CBL 0036L 03 One 1 floppy drive ribbon cable CBL 022L One 1 I O shield PTO7L For PDSBM LN2 LN2 One 1 I O shield PTO2L PDSBM LN1 One 1 Super Micro CD containing drivers and utilities One 1 User s BIOS Manual 1 1 SUPER PDSBM LN1 PDSBM LN2 PDSBM LN2 User s Manual Contacting Super Micro Headquarters Address Super Micro Computer Inc 980 Rock Ave San Jose CA 95131 U S A Tel 1 408 503 8000 Fax 1 408 503 8008 Email marketing supermicro com General Information support supermicro com Technical Support Web Site www supermicro com Europe Address Super Micro Computer B V Het Sterrenbeeld 28 5215 ML s Hertogenbosch The Netherlands Tel 31 0 73 6400390 Fax 31 0 73 6416525 Email sales supermicro nl General Information support supermicro nl Technical Support rma supermicro nl Customer Support Asia Pacific Address Super Micro Taiwan 4F No 232 1 Liancheng Road Chung Ho 235 Taipei Hsien Taiwan R O C Tel 886 2 8226 3990 Fax 886 2 8226 3991 Web Site www supermicro com tw Technical Support Email support supermicro com tw Tel 886 2 8228 1366 ext 132 or 139 Chapter 1 Introduction SUPER PDSBM LN1 PDSBM LN2 PDSBM LN2 Image we a ET ove e Note All graphics shown in this manual were based upon the lates
51. Warning Take Caution when changing the Advanced settings An Incorrect system to malfunction When this occurs revert to the default setting 4 9 SUPER PDSBM LN1 PDSBM LN2 PDSBM LN2 User s Manual Clock Spectrum Feature If Enabled the BIOS will monitor the level of Electromagnetic Interference caused by the components and will attempt to decrease the interference whenever needed The options are Enabled and Disabled Default Primary Video Adapter This feature allows the user to select the video device used by the BIOS during the POST routines If set to Auto PEG PCI IGD Internal Graphics Device devices will be selected If set to IGD Internal Graphics Device IGD and PCI devices will be selected If set to PEG PEG and PCI devices will be selected If set to PCI PCI PEG and IGD devices will be selected On chip Graphics IGD Enable Select Auto to automatically enable an internal graphics device if it is detected The options are Disabled and Auto DVMT 3 0 Mode This feature allows the user to configure the DVMT 3 0 Graphics Memory that the driver will allocate for Internal Graphics Device use The options are Fixed DVMT and Combo Pre allocated Memory Size This feature allows the user to setthe total amount of Pre allocated graphics memory to be used by the Internal Graphics Device The options are 1 MB and 8 MB Total Graphics Memory This feature allows the user to set the total amount of graphics memory
52. ables to display network activity Refer to the table on the right for pin definitions HDD LED Pin Definitions JF1 Pin Definition 13 LED Anode HD Active GLAN1 2 LED Pin Definitions JF1 Pin Definition 9 11 Voc 10 12 Ground A HDD LED B NIC1 LED C NIC2 LED EE 1l i 7 NMI B X B m B Power LED Vcc i i 5 HDD LED Vcc j ZyNIC1 LED Vcc 2 Son SE 225 LED Vec 0a M i 7 OH Fan Fail LED Vee z l Sea aon PL i Power Fail LED Vec e J x Ground Reset gt Reset Button a EX 5 Bis p T Ground PWR gt Power Button UD Ooa SUPER PDSBM LN1 PDSBM LN2 PDSBM LN2 User s Manual Overheat Fan Fail LED OH OH Fan Fail LED Pin Definitions JF1 Connect an LED to the OH Fan Fail connection on pins 7 and 8 of JF1 to provide advanced warnings of chassis overheating or fan failure Refer to the table on the right for pin definitions Pin Definition i LED_Anode OH Fan Fail LED Signal OH Fan Fail Indicator Status State Definition Off Overheat Flash Fan Fail ing Power Fail LED PWR Fail LED Pin Definitions JF1 The Power Fail LED connection is Pin Definition located on pins 5 and 6 of JF1 Refer SATA 5
53. ally detected and be placed in the Native Mode Note The Enhanced mode is supported by the Windows 2000 OS or a later version When the SATA Controller Mode is set to Enhanced the following items will display Serial ATA SATA RAID Enable Select Enable to enable Serial ATA RAID Functions For the Windows OS environment use the RAID driver if this feature is set to Enabled When this item is set to Enabled the item ICH RAID Code Base will be available for you to select either Intel or Adaptec Host RAID firmware to be activated If this item is set to Disabled the item SATA AHCI Enable will be available The options are Enabled and Disabled ICH RAID Code Base The default setting is the Intel SATA RAID utility For Intel HostRAID Setup Instructions please refer to Appendix C SATA AHCI Select Enabled to enable the function of the Serial ATA Advanced Host Interface Take caution when using this function This feature is for advanced programmers only The options are Enabled and Disabled gt IDE Primary Master Slave IDE Secondary Master Slave SATA Port3 and SATA Port4 These settings allow the user to set the parameters of IDE Primary Master Slave IDE Secondary Master Slave SATA Port3 SATA Port4 slots Hit lt Enter gt to activate the following sub menu screen for detailed options of these items Set the correct configurations accordingly The items included in the sub menu are 4 4 Chapter 4 BIOS
54. are speci fied press the Enter key to continue with the installation g From the Windows XP 2000 2003 Setup screen press the Enter key The XP 2000 2003 Setup will automatically load all device files and then continue the Windows XP 2000 2003 installation h After the Windows XP 2000 2003 Installation is completed the system will au tomatically reboot i Insert the Super Micro Setup CD that came with the package into the CD Drive during system reboot and the main screen will appear Note the current version of the ICH7R SATA RAID Utility can only support the Windows XP 2000 2003 Operating System C 10 Appendix D Software Installation Instructions Appendix D Software Installation Instructions D 1 Installing Drivers After you ve installed the Windows Operating System a screen as shown below will appear You are ready to install software programs and drivers that have not yet been installed To install these software programs and drivers click the icons to the right of these items SUPERMICRO PDSBM Motherboard Drivers amp Tools WinXP AX CI Intel 946x Chipset INF files 5 U PE RM I C R Microsoft Directe 9 0 Drivers amp Tools Intel Graphics Media Accelerator Driver Intel 946GZ Chipset Intel PRO Network Connections Drivers PDSBM LNI LN2 Trusted Platform Module Driver SUPERMICRO Supero Doctor III Build driver diskettes and manuals 5 3 E
55. contact pads to prevent the accidental clearing of CMOS To clear CMOS use a metal object such as a small screwdriver to touch both pads at the same time to short the connection Always remove the AC power cord from the system before clear ing CMOS Note For an ATX power supply you must completely shut down the system remove the AC power cord and then short JBT1 to clear CMOS Watch Dog Enable Disable Watch Dog Watch Dog is a system monitor that can reboot the system when a software application hangs Jumper Setting Definition Close Pins 1 2 to reset the system if an applica Pins 1 2 on tion hangs Close Pins 2 3 to generate a non maskable interrupt signal for the application that hangs Watch Dog must also be enabled in the BIOS If this jumper is set to Disabled the Watch Dog Settings listed in the BIOS will be ignored The functionality of WD will be completely dis abled See the table on the right for jumper set Pins 2 3 NMI Open Disabled n5 Far SUPER PDsBN LN1 LN2 tings 5 24 Pin ATX PWR 8 PWR r Super 8 e t BBH i A Clear CMOS 227 94602 S Watch Dog Enable 8 DIMMA E El 8 2 5 2 DIMMB JPL2 LAN CTRL 1 5 Slot 6 PCI E x4 in x8 slot Slot 6 Expansion PCI 33 MHz nd Battery LE3 ICH7R A Slot 5 PCI 33 MHz South Bridge
56. e Disabled and Enabled Thermal Management 2 Available when supported by the CPU Set to Enabled to use Thermal Management 2 TM2 which will lower CPU voltage and frequency when the CPU temperature reaches a predefined overheat threshold Set to Disabled to use Thermal Manager 1 TM1 allowing CPU clocking to be regulated via CPU Internal Clock modulation when the CPU temperature reaches the overheat threshold Adjacent Cache Line Prefetch Available when supported by the CPU The CPU fetches the cache line for 64 bytes if this option is set to Disabled The CPU fetches both cache lines for 128 bytes as comprised if Enabled The options are Disabled and Enabled Set Maximum Ext CPUID 3 When set to Enabled the Maximum Extended CPUID will be set to 3 The options are Disabled and Enabled 4 8 Chapter 4 BIOS Echo TPR Set to Enabled to prevent xTPR messages from being sent to the system The options are Disabled and Enabled C1 Enhanced Mode Available when supported by the CPU Set to Enabled to enable Enhanced Halt State to lower CPU voltage frequency to prevent CPU overheating The options are Enabled and Disabled Note please refer to Intel s web site for detailed information Intel lt R gt Virtualization Technology Available when supported by the CPU Select Enabled to use the Virtualization Technology and allow one platform to run multiple operating systems and applications in independent partit
57. e updating the BIOS to prevent possible boot failure 4 1 SUPER PDSBM LN1 PDSBM LN2 PDSBM LN2 User s Manual 4 2 Running Setup Default settings are in bold text unless otherwise noted The BIOS setup options described in this section are selected by choosing the ap propriate option from the main BIOS Setup screen All displayed text is described in this section although the screen display is often all you need to understand how to set the options see the next page When you first power the computer the Phoenix BIOS is immediately acti vated While the BIOS is in control the Setup program can be activated in one of two ways 1 By pressing Delete immediately after turning the system on or 2 When the message shown below appears briefly at the bottom of the screen during the POST Power On Self Test press the Delete key to activate the main Setup menu Press the Delete key to enter Setup 4 3 Main BIOS Setup All main Setup options are described in this section The main BIOS Setup screen is displayed below Use the Up Down arrow keys to move among the different settings in each menu Use the Left Right arrow keys to change the options for each setting Press the Esc key to exit the CMOS Setup Menu The next section describes in detail how to navigate through the menus Items that use submenus are indicated with the icon With the item highlighted press the Enter key to access the
58. ed in the extended memory area to be cached written into a buffer a storage area in the Static DROM SDROM 4 11 SUPER PDSBM LN1 PDSBM LN2 PDSBM LN2 User s Manual written into L1 L2 L3 cache inside the CPU to speed up CPU operations Select Uncached to disable this function Select Write Through to allow data to be cached into the buffer and written into the system memory at the same time Select Write Protect to prevent data from being written into the extended memory area above 1 MB Select Write Back to allow the CPU to write data back directly from the buffer without writing data to the System Memory to optimize CPU operation The options are Uncached Write Through Write Protect and Write Back Discrete MTRR Allocation If enabled MTRRs Memory Type Range Registers are configured as distinct separate units and cannot be overlapped If enabled the user can achieve better graphic effects when using a Linux graphic driver that requires write combining configuration with 4GB or more memory The options are Enabled and Disabled PCI Configuration Access the submenu to make changes to the following settings for PCI devices gt Onboard PCI Exp x1 GNIC1 Access the submenu for each of the settings above to make changes to the following PCI Express Port 5 GNIC1 Select Enabled to always enable PCI Ex1 Port 5 GNIC1 Select Disabled to disable Port 5 GNIC1 The options are Auto Enabled and Disabled Option
59. een optional settings Jumpers create shorts between two pins to change the function of the connector Pin 1 is identified with a square solder pad on the printed circuit board See the motherboard layout pages for jumper locations Note On two pin jumpers Closed means the jumper is on and Open means the jumper is off the pins GLAN Enable Disable JPL1 JPL2 enable or disable GLAN Port1 Port 2 on the motherboard See the table on the right for jumper set tings The default setting is enabled Note JPL2 is for 2 only LE2 24 Pin ATX PWR Super l O 1 KB Mouse 05872 34 Qo 6 LANCTRL 5 Intel 94662 North Bridge LANT DIMMA LAN2 DIMMB an5 F u LAN Slot 6 PCI E x4 in x8 slot Slot 6 Expansion PCI 33 MHz x tes ICH7R Slot 5 PCI 33 MHz BIOS ES usB 5 WD Use 6 L SPKR m Lr in SUPER PDSBM LN1 LN2 2 18 JPG i SES South Bridge 5 3 JP3 5 Connector E Jumper Cap 3 2 1 Setting Pin 1 2 short GLAN Enable Pin Definition 1 2 Enabled default 2 3 Disabled 8 PWR A GLAN Port1 Enable B GLAN Port2 Enable Control Floppy LSATAi 5 Chapter 2 Installation CMOS Clear JBT1 is used to clear CMOS Instead of pins this jumper consists of
60. em 4 5 SUPER PDSBM LN1 PDSBM LN2 PDSBM LN2 User s Manual 4 4 Advanced Setup Choose the Advanced Menu from the Phoenix BIOS Setup Utility with the arrow keys You should see the following display The items with a triangle beside them have sub menus that can be accessed by highlighting the item and pressing lt Enter gt Boot Features gt Boot Features Access the submenu to make changes to the following settings QuickBoot Mode If enabled this feature will speed up the POST Power On Self Test routine by skipping certain tests after the computer is turned on The settings are Enabled and Disabled If Disabled the POST routine will run at normal speed Quiet Mode This setting allows you to Enable or Disable the graphic logo screen display during bootup POST Beep Set to Enabled to activate the alarm if an error occurs during bootup If set to Disabled the alarm will not be beeping even if a boot error occurs One single POST beep is normal ACPI Mode Use the setting to determine whether you want to use the ACPI Advanced Configuration and Power Interface power management on your system The options are Yes and No 4 6 Chapter 4 BIOS Enabling Multi Media Timer Select Yes to activate a set of timers that are alternative to the traditional 8254 timers for OS use The options are Yes and No Power Button Behavior If set to Instant Off the system will power on or power off immediately as
61. es successfully tested nnnn kB Shadow RAM Passed Where nnnn is the amount of shadow RAM in kilobytes successfully tested nnnn kB System RAM Passed Where nnnn is the amount of system RAM in kilobytes successfully tested One or more 120 Block Storage Devices were excluded from the Setup Boot Menu There was not enough room in the IPL table to display all installed I2O block storage devices Operating system not found Operating system cannot be located on either drive A or drive C Enter Setup and see if fixed disk and drive A are properly identified Parity Check 1 nnnn Parity error found in the system bus BIOS attempts to locate the address and display it on the screen If it cannot locate the address it displays Parity is a method for checking errors in binary data A parity error indicates that some data has been corrupted Parity Check 2 nnnn Parity error found in the I O bus BIOS attempts to locate the address and display it on the screen If it cannot locate the address it displays Press F1 to resume F2 to Setup F3 for previous Displayed after any recoverable error message Press F1 to start the boot process or F2 to enter Setup and change the settings Press F3 to display the previous screen usually an initialization error of an Option ROM i e an add on Write down and follow the information shown on the screen 4 Appendix BIOS POST Messages Press lt
62. hts Reserved Nane RAID Level Disks Strip Size Capacity 1 Vo Lun RAID1 Minor Select Disks NA 6 6 Create Vo lune Enter a string between 1 and 16 characters in length that can be used to uniquely identify the RAID volume This nane is case sensitive and can not contain special characters b Specify a name for the RAID 1 set and press the lt Tab gt key or the lt Enter gt key to go to the next field You can use the lt Esc gt key to select the previous menu c When RAID Level item is highlighted press the lt Up Arrow gt lt Down Arrow gt keys to select RAID 1 Mirror and hit lt Enter gt d When the Capacity item is highlighted enter your RAID volume capacity and hit lt Enter gt The default setting is the maximum capacity allowed e Press lt Enter gt when the Create Volume item is highlighted A warning message displays f When asked Are you sure you want to create this volume Y N press Y to create the RAID volume or type N to go back to the Create Volume menu C 5 SUPER PDSBM LN1 PDSBM LN2 PDSBM LN2 User s Manual Creating a RAID 10 RAID 1 RAID 0 a Select Create RAID Volume from the main menu and press the lt Enter gt key The following screen will appear Intel R Matrix Storage Manager option 5 1 0 1813 ICH R wRAIDS Copyright C 2083 05 Intel Corporation 11 Rights Reserved 1 Name RAID Level RARIDIBCRAID8 D Di
63. ice may benefit from a greater clock rate The options are Default 0020h 0040h 0060h 0080h OOAOh 00COh and OOEOh For Unix Novelle and other Operating Systems please select the option other If a drive fails after the installation of a new software please change this setting and try again A different OS requires a different Bus Master clock rate PCI E x4 Slot 6 PCI 33 Slot 5 PCI 33 Slot 6 Access the submenu for each of the settings above to make changes to the following Option ROM Scan When enabled this setting will initialize the device expansion ROM The options are Enabled and Disabled Enable Master This setting allows you to enable the device specified as the PCI bus master The options are Enabled and Disabled Latency Timer This setting allows you to set the clock rate for the Bus Master A high priority high throughout device may benefit from a greater clock rate The options are Default 0020h 0040h 0060h 0080h 00A0h 00COh and OOEOh For Unix Novelle and other Operating Systems please select the option other If a drive fails after the installation of a new software please change this setting and try again A different OS requires a different Bus Master clock rate 4 13 SUPER PDSBM LN1 PDSBM LN2 PDSBM LN2 User s Manual Device Configuration Access the submenu to make changes to the following settings KBC Clock Input This setting allows you to select the clock frequency for KBC
64. ils BIOS hardware test May require board repair Check date and time settings BIOS found date or time out of range and reset the Real Time Clock May require setting legal date 1991 2099 Previous boot incomplete Default configuration used Previous POST did not complete successfully POST loads default values and offers to run Setup If the failure was caused by incorrect values and they are not corrected the next boot will likely fail On systems with control of wait states improper Setup settings can also terminate POST and cause this error on the next boot Run Setup and verify that the waitstate configuration is correct This error is cleared the next time the system is booted Memory Size found by POST differed from CMOS Memory size found by POST differed from CMOS Diskette drive A error Diskette drive B error Drive A or B is present but fails the BIOS POST diskette tests Check to see that the drive is defined with the proper diskette type in Setup and that the diskette drive is attached correctly Incorrect Drive A type run SETUP Type of floppy drive A not correctly identified in Setup Incorrect Drive B type run SETUP Type of floppy drive B not correctly identified in Setup System cache error Cache disabled RAM cache failed and BIOS disabled the cache On older boards check the cache jumpers You may have to replace the cache See your dealer Adisabled cache slows system performance considerably A 2
65. ions creating multiple virtual systems in one physical computer The options are Enabled and Disabled Note If you have made any change to this setting please power off and restart the system for the change to take effect Please refer to Intel s web site for detailed information No Execute Mode Memory Protection Available when supported by the CPU and the OS Set to Enabled to enable Execute Disable Bit and allow the processor to classify areas in memory where an application code can execute and where it cannot and thus preventing a worm or a virus from inserting and creating a flood of codes to overwhelm the processor or damage the system during an attack The options are Disabled and Enabled Note This feature is available when it is supported by your OS and your CPU Please refer to Intel s and Microsoft s web sites for more information Intel Speed Step Support Available when supported by the CPU Select Enabled to use the Enhanced Intel SpeedStep Technology allowing the system to automatically adjust processor voltage and core frequency in order to reduce power consumption and heat dissipation If set to Enabled only native mode is supported The options are Enabled and Disabled Please refer to Intel s web site for detailed information gt Advanced Chipset Control Access the submenu to make changes to the following settings setting a very high DRAM frequency or a wrong DRAM timing may cause the
66. ips memory modules or gold contacts When handling chips or modules avoid touching their pins Put the motherboard and peripherals back into their antistatic bags when not in use For grounding purposes make sure your computer chassis provides excellent conductivity between the power supply the case the mounting fasteners and the motherboard Use only the correct type of onboard CMOS battery as specified by the manu facturer Do not install the onboard battery upside down to avoid possible explo sion Unpacking The motherboard is shipped in antistatic packaging to avoid static damage When unpacking the board make sure the person handling it is static protected 2 2 Motherboard Installation Note Be sure to mount the motherboard into the chassis before you install the CPU onto the motherboard All motherboards have standard mounting holes to fit different types of chassis Make sure that the locations of all the mounting holes for both motherboard and chassis match Make sure that the metal standoffs click in or are screwed in tightly Then use a screwdriver to secure the motherboard onto the motherboard tray Note some components are very close to the mounting holes Please take precautionary measures to prevent damage done to these components when you install the motherboard to the chassis 2 1 SUPER PDSBM LN1 PDSBM LN2 PDSBM LN2 User s Manual 2 3 Processor and Heatsink Installation When handling the p
67. l Fixed Disk Boot Sector Select Normal to enable the function of Write Protect to protect the boot sector on the hard drives against viruses Password on Boot This setting allows you to determine if password is required for a user to enter the system at system boot The options are Enabled a password is required and Disabled a password is not required Trusted Platform Support Select Enabled to enable support for trusted platforms and allow the BIOS to automatically download the drivers needed to provide support for the platforms specified The options are Enabled and Disabled If set to Enabled the TPM State screen displays 4 18 Chapter 4 BIOS 4 6 TPM Trusted Platform Modules State Available if the TPM Support Option is enabled in the Security Setting Choose the TPM State menu from the Phoenix BIOS Setup Utility with the arrow keys You should see the following display Current TPM State Current TPM State This item shows the current TPM State only Change TPM State Select Enabled amp Activate to enable TPM support for the system Select De activate amp Disabled to disable the functionality of TPM support If No Change is selected no changes will be done to the current TPM State Select Clear to clear or erase all information related to TPM support If set to Clear the sub menu Physical Presence Operations will appear Select Reject to cancel the selection Select Execute to proceed
68. llation Note 2 This chapter describes RAID Configuration Instructions for the Intel ICH RAID Controller designed for the Windows OS C 1 Introduction to Serial ATA and Parallel ATA To configure the SATA RAID functions you must first use the Intel ICH7R SATA RAID Utility program to configure the RAID Level that you desire before installing the Windows XP 2000 2003 operating system and other software drivers The necessary drivers are all included on the Super Micro CD that came packaged with your motherboard Note that the current version of the ICH7R SATA RAID Utility can only support Windows XP 2000 2003 Operating Systems Serial ATA SATA Serial ATA SATA is a physical storage interface that uses a single cable with a minimum of four wires to create a point to point connection between devices It is a serial link which supports transfer rates up to 3Gbps Because the serial cables used in SATA are thinner than the traditional cables used in Parallel ATA PATA SATA systems have better airflow and can be installed in smaller chassis than Parallel ATA In addition the cables used in PATA are limited to a length of 40cm while Serial ATA cables can be up to one meter in length Overall SATA provides better functionality than PATA Introduction to Intel ICH7R Serial RAID Located in the South Bridge of the Intel 82946GZ chipset the I O Controller Hub ICH7R provides the I O subsystem with access to the rest of the system It sup
69. mmend you load the Optimized Default Settings If you have already done so please skip to Step 3 2 Use the arrow keys to select the Exit Settings Once in the Exit settings Scroll down to select Load Optimized Default Settings and press the Enter key Select OK to confirm the selection Press the Enter key to load the default settings for the BIOS 3 Use the arrow keys to select the Main section in BIOS 4 Scroll down to SATA Control Mode and press the Enter key to select En hanced 5 Scroll down to SATA RAID Enabled and press Enter Then select Enabled 6 Scroll down to Exit Select Exit Saving Changes from the Exit menu Press the Enter key to save the changes and exit the BIOS 7 Once you ve exited the BIOS Utility the system will re boot 8 During the system boot up press the Ctrl and I keys simultaneously to run the Intel RAID Configuration Utility when prompted by the following message Press Ctrl lt gt for Intel RAID Configuration Utility C 2 Appendix C Intel Installation Guidelines Using the Intel ICH7R SATA RAID Utility Program 1 Creating Deleting and Resetting RAID Volumes a After the system exits from the BIOS Setup Utility the system will automatically reboot The following screen appears after Power On Self Test RAID Uolunes None def ined Physical Disks Port Drive Model Serial 512 Type Status Vol ID 4 HDC WD258aSI
70. nhance your system We recommend that you review the CD and install the applications you need Applications on the CD include chipset drivers for Windows and security and audio drivers 3 4 Returning Merchandise for Service A receipt or copy of your invoice marked with the date of purchase is required be fore any warranty service will be rendered You can obtain service by calling your vendor for a Returned Merchandise Authorization RMA number When returning to the manufacturer the RMA number should be prominently displayed on the outside of the shipping carton and mailed prepaid or hand carried Shipping and handling charges will be applied for all orders that must be mailed when service is complete 3 3 SUPER PDSBM LN1 PDSBM LN2 PDSBM LN2 User s Manual This warranty only covers normal consumer use and does not cover damages in curred in shipping or from failure due to the alteration misuse abuse or improper maintenance of products During the warranty period contact your distributor first for any product problems 3 4 Chapter 4 BIOS Chapter 4 BIOS 4 1 Introduction This chapter describes the Phoenix BIOS Setup utility for the PDSBM LN1 PDSBM LN2 PDSBM LN2 The Phoenix ROM BIOS is stored in a flash chip and can be easily upgraded using a floppy disk based program Note Due to periodic changes to the BIOS some settings may have been added or deleted and might not yet be recorded in this manual Please
71. nless you request and receive written permission from SUPER MICRO COMPUTER you may not copy any part of this document Information in this document is subject to change without notice Other products and companies referred to herein are trademarks or registered trademarks of their respective companies or mark holders Copyright 2007 by SUPER MICRO COMPUTER INC All rights reserved Printed in the United States of America Preface Preface About This Manual This manual is written for system integrators PC technicians and knowledgeable PC users It provides information for the installation and use of the SUPER PDSBM LN1 PDSBM LN2 PDSBM LN2 motherboard The PDSBM LN1 PDSBM LN2 PDSBM LN2 supports a single Intel Xeon 3000 Series Core 2 Duo Pentium D Pentium 4 Processor with a system bus speed of up to1066 MHz The Intel Xeon 3000 Series Core 2 Duo Pentium D Pentium 4 Processor supports the 775 Land Grid Array Package that interfaces with the motherboard via an LGA775 socket With the support of the Quad Core Dual Core Technology Wide Dynamic Execution FSB Dynamic Bus Inversion DBI Advanced Digital Media Boost Smart Memory Access and Thermal Management 2 TM2 the PDSBM LN1 PDSBM LN2 PDSBM LN2 delivers unparalleled system performance and great power efficiency in a slim size package Please refer to the motherboard specifications pages on our web site http www supermicro com Products for updates on supported proces sors
72. oid possible explosion Make sure the 8 pin 12v power connector at J41 is connected to your power supply No Power Make sure that there are no short circuits between the motherboard and chas sis Make sure that all jumpers are set to their default positions Check if the 115V 230V switch on the power supply is properly set Turn the power switch on and off to test the system The battery on your motherboard may be old Check to verify that it still supplies 3VDC If it does not replace it with a new one No Video If the power is on but you have no video remove all the add on cards and cables Use the speaker to determine if any beep codes exist Refer to Appendix A for details on beep codes 3 1 SUPER PDSBM LN1 PDSBM LN2 PDSBM LN2 User s Manual NOTE If you are a system integrator VAR or OEM a POST diagnostics card is recommended For I O port 80h codes refer to App B Memory Errors 1 Make sure that the DIMM modules are properly and fully installed 2 You should be using unbuffered DDR2 memory see the next page Also it is recommended that you use the same memory speed for all DIMMs in the system See Section 2 4 for memory limitations 3 Check for bad DIMM modules or slots by swapping modules between slots and noting the results 4 Check the power supply voltage 115V 230V switch Losing the System s Setup Configuration 1 Make sure that you are using a high
73. ould see the following display Security setting options are displayed by high lighting the setting using the arrow keys and pressing lt Enter gt All Security BIOS settings are described in this section Main Advanced Security TPM State Physical Presence operations Boot Item Specific Help User Password Is Set Supervisor Password Set User Password Fixed disk boot sector Normal Password on boot Disabled TPM Support Enabled Fi 14 F9 Esc e Enter F18 Supervisor Password Is This item indicates if a supervisor password has been entered for the system Clear means such a password has not been used and Set means a supervisor password has been entered for the system User Password Is This item indicates if a user password has been entered for the system Clear means such a password has not been used and Set means a user password has been entered for the system Set Supervisor Password When the item Set Supervisor Password is highlighted hit the lt Enter gt key When prompted type the Supervisor s password in the dialogue box to set or to change supervisor s password which allows access to the BIOS Set User Password When the item Set User Password is highlighted hit the lt Enter gt key When prompted type the user s password in the dialogue box to set or to change the user s password which allows access to the system at boot up 4 17 SUPER PDSBM LN1 PDSBM LN2 PDSBM LN2 User s Manua
74. p Arrow gt lt Down Arrow gt keys to highlight the RAID set drive to reset and press lt Space gt to select c Press lt Enter gt to reset the RAID set drive A Warning message displays d Press Y to reset the drive or type N to go back to the main menu Exiting the Intel Matrix Storage Manager Utility a From the main menu select item4 Exit and press lt Enter gt A warning message will appear b Press Y to reset the drive or type N to go back to the main menu C 9 SUPER PDSBM LN1 PDSBM LN2 PDSBM LN2 User s Manual C 2 Installing the Windows XP 2000 2003 for Systems with RAID Functions Installing a New Operating System the Windows XP 2000 2003 OS a Insert Microsoft s Windows XP 2000 2003 Setup CD in the CD Driver and the system will start booting up from CD b Press the F6 key when message Press F6 if you need to install a third party SCSI or RAID driver displays c When the Windows XP 2000 2003 Setup screen appears press S to specify additional device s d Insert the driver diskette Intel AA RAID XP 2000 2003 Driver for ICH7R into Drive A and press the Enter key e Select the Intel R 82801GR GH SATA RAID Controller from the list indicated in the 2000 2003 Setup Screen and press the Enter key f Press the Enter key to continue the installation process If you need to specify any additional devices to be installed do it at this time Once all devices
75. ptions are x12 x13 x14 x15 x16 x17 and x18 Note If a wrong ratio which is not supported by the CPU is selected the system may hang If this happens clear CMOS to recover the system 4 7 SUPER PDSBM LN1 PDSBM LN2 PDSBM LN2 User s Manual Core Multi Processing Available when supported by the CPU Set to Enabled to use a processor s Second Core and beyond Please refer to Intel s web site for more information The options are Disabled and Enabled Hyper threading Available when supported by the CPU Setto Enabled to use the Hyper Threading Technology which will result in increased CPU performance The options are Disabled and Enabled Machine Checking Available when supported by the CPU Set to Enabled to activate the function of Machine Checking and allow the CPU to detect and report hardware machine errors via a set of model specific registers MSRs The options are Disabled and Enabled Fast String Operations Available when supported by the CPU Set to Enabled to enable the fast string operations for special CPU instructions The options are Disabled and Enabled Compatible FPU Code Available when supported by the CPU Set to Enabled to keep the contents of the last instruction Operating Code OP Code in the floating point FP state The options are Disabled and Enabled Split Lock Operation Set to Enabled to mask alignment check exceptions for split lock transactions The options ar
76. quality power supply A poor quality power supply may cause the system to lose the CMOS setup information Refer to Section 1 6 for details on recommended power supplies 2 The battery on your motherboard may be old Check to verify that it still supplies 3VDC If it does not replace it with a new one 3 If the above steps do not fix the Setup Configuration problem contact your vendor for repairs 3 2 Technical Support Procedures Before contacting Technical Support please take the following steps Also note that as a motherboard manufacturer Super Micro does not sell directly to end users so it is best to first check with your distributor or reseller for troubleshooting services They should know of any possible problem s with the specific system configuration that was sold to you 1 Please go through the Troubleshooting Procedures and Frequently Asked Ques tion FAQ sections in this chapter or see the FAQs on our web site http www supermicro com support fags before contacting Technical Support 2 BIOS upgrades can be downloaded from our web site at http www supermicro com support bios Note Not all BIOS can be flashed it depends on the modifications to the boot block code 3 If you still cannot resolve the problem include the following information when contacting Super Micro for technical support Motherboard model and PCB revision number BIOS release date version this can be seen on the ini
77. r LED and at the same time the CPU speed will be decreased 1 4 Power Configuration Settings This section describes features of your motherboard that deal with power and power settings Slow Blinking LED for Suspend State Indicator When the CPU goes into a suspend state the chassis power LED will start blinking to indicate that the CPU is in suspend mode When the user presses any key the CPU will wake up and the LED will automatically stop blinking and remain on Chapter 1 Introduction BIOS Support for USB Keyboard If the USB keyboard is the only keyboard in the system it will function like a normal keyboard during system boot up Main Switch Override Mechanism When an ATX power supply is used the power button can function as a system suspend button When the user presses the power button the system will enter a SoftOff state The monitor will be suspended and the hard drive will spin down Pressing the power button again will cause the whole system to wake up During the SoftOff state the ATX power supply provides power to keep the required circuitry in the system alive In case the system malfunctions and you want to turn off the power just press and hold the power button for 4 seconds The power will turn off and no power will be provided to the motherboard Wake On Ring WOR Header Wake up events can be triggered by a device such as the external modem ringing when the system is in the SoftOff state Note that ex
78. rea block 0 512K to be cached written into a buffer a storage area in the Static DROM SDROM or to be written into L1 L2 cache inside the CPU to speed up CPU operations Select Uncached to disable this function Select Write Through to allow data to be cached into the buffer and be written into the system memory at the same time Select Write Protect to prevent data from being written into the base memory area of Block 0 512K Select Write Back to allow the CPU to write data back directly from the buffer without writing data to the System Memory to optimize CPU operation The options are Uncached Write Through Write Protect and Write Back Cache Base 512K 640K If enabled this feature will allow the data stored in the memory area 512K 640K to be cached written into a buffer a storage area in the Static DROM SDROM or be written into L1 L2 L3 cache inside the CPU to speed up CPU operations Select Uncached to disable this function Select Write Through to allow data to be cached into the buffer and written into the system memory at the same time Select Write Protect to prevent data from being written into the base memory area of Block 512K 640K Select Write Back to allow the CPU to write data back directly from the buffer without writing data to the System Memory to optimize CPU operation The options are Uncached Write Through Write Protect and Write Back Cache Extended Memory If enabled this feature will allow the data stor
79. reatly reduces the number of components required for interfacing with floppy disk drives The Super I O supports two 360 720 K 1 2 M 1 44 M or 2 88 M disk drives and data transfer rates of 250 Kb s 500 Kb s or 1 Mb s It also provides two high speed 16550 compatible serial communication ports UARTs Each UART includes a 16 byte send receive FIFO a programmable baud rate generator complete modem control capability and a processor interrupt system Both UARTs provide legacy speed with baud rate of up to 115 2 Kbps as well as an advanced speed with baud rates of 250 K 500 K or 1 Mb s which support higher speed modems The Super I O provides functions that comply with ACPI Advanced Configuration and Power Interface which includes support of legacy and ACPI power manage ment through a SMI or SCI function pin It also features auto power management to reduce power consumption Chapter 2 Installation 2 1 Chapter 2 Installation Static Sensitive Devices Electric Static Discharge ESD can damage electronic components To prevent damage to your system board it is important to handle it very carefully The following measures are generally sufficient to protect your equipment from ESD Precautions Use a grounded wrist strap designed to prevent static discharge Touch a grounded metal object before removing the board from the antistatic bag Handle the board by its edges only do not touch its components peripheral ch
80. rial Ports 1 2 USB 3 4 J15 Back Panel Universal Serial Ports 3 4 See Below USB 5 J49 USB 6 J48 Internal Universal Serial Ports 5 6 See Below USB 7 8 J44 Front Panel USB ports 7 8 J44 JG1 Video Graphics Connector WOL WOL Wake On LAN Header WOR JWOR Wake On Ring Header LED Indicators Description See Chapter 2 LE2 LED CPU VRM Overheat LED Indicator LES LE4 LEDs POST Power on self test Code LED Indicators See Chapter 2 for detailed information on jumpers ports and JF1 front panel connections T LAN2 Port and the second LAN Controller are available on the PDSBM LN2 LN2 only t USB 3 4 5 are available on the OEM Version Only 1 5 SUPER PDSBM LN1 PDSBM LN2 PDSBM LN2 User s Manual Motherboard Features CPU Latest CPU technology Single Intel Xeon 3000 Series Core 2 Duo Processor Pentium D Processor Pentium 4 Processor with a system bus speed of up to 1066 MHz The Intel Xeon Core 2 Duo Processor supports e Quad Core Dual Core Technology FSB Dynamic Bus Inversion Intel Smart Memory Access Intel Dynamic Power Coordination Memory Latest memory technology Supports unbuffered single or dual channel Non ECC DDR2 up to 4GB s DDR2 667 533 for single channel mode or dual channel Interleaved mode Supports a maximum memory bandwidth of 5 33GB s in single channel or dual channel asymmetric mode or 10 67GB s in dual channel interleaved mode Supports 25
81. ride mechanism External modem ring on Onboard I O Built in ICH7R SATA Controller 4 connectors for 4 devices 300MB s ntel ICH7R South Bridge supports RAID 0 1 5 10 in the Windows OS environ ment 1 floppy port interface up to 2 88 MB 1 Fast UART 16550 compatible serial port and 1 header Dual Intel 82573L Gigabit Ethernet Controllers support 2 Gigabit LAN ports For PDSBM LN2 LN2 only Single Intel 82573L Gigabit Ethernet Controllers support a Gigabit LAN port For PDSBM LN1 only PS 2 mouse and PS 2 keyboard ports One IDE hard drive supports single dual channel s Two USB Universal Serial Bus 2 0 ports for a speed of up to 480Mbps on the backpanel and two USB headers that can be accessed from the front panel Two additional rear USB ports and two Internal USB connectors are available for the OEM version of motherboard Latest USB 2 0 technology Built in GMCH and Onboard VGA Connector Winbond Super 83627DHG Other Wake on LAN e Wake on Ring WOR Onboard CPU VRM Overheat LED LE2 Chassis Intrusion Header and Detection PbFree CD Utilities BIOS flash upgrade utility Drivers and software for Intel 946GZ chipset utilities Dimensions Micro ATX form factor 9 6 x 9 6 243 8 x 243 8 mm 1 7 SUPER PDSBM LN1 PDSBM LN2 PDSBM LN2 User s Manual vau o LGA775 PROCESSOR 1 NCk505 CLK gt lt ur 3 gt FSB 1000 800 533
82. rocessor package avoid placing direct pressure on the label area of the fan Notes 1 Always connect the power cord last and always remove it before adding removing or changing any hardware components Make sure that you install the processor into the CPU LGA 775 socket before you install the CPU heatsink 2 The Intel Xeon 3000 Core 2 Duo Pentium boxed CPU package contains the CPU fan and heatsink assembly If you buy a CPU separately make sure that you use only Intel certified multi directional heatsink and fan 4 Make sure to install the motherboard into the chassis before you install the CPU heatsink and fan 5 When purchasing an Intel LGA boxed CPU or when receiving a motherboard with an CPU pre installed make sure that the CPU plastic cap is in place and none of the CPU pins are bent otherwise contact the retailer immediately 6 Refer to the MB Features Section for more details on CPU support Installation of the FC LGA6 Processor top of the 1 Press the load lever to release Load Plate the load plate which covers the CPU socket from its locking position 2 Gently lift the load lever to open the load plate Load Plate with PnP Cap attached TE 2 2 3 Use your thumb and your index finger to hold the CPU at the North Center Edge and the South Center Edge of the CPU 4 Align CPU Pin1 the CPU corner marked with a triangle against the Socket corner marked with a triangle cutout 5 Align the
83. ror messages Check for configuration errors Check for keyboard errors Set up hardware interrupt vectors Initialize Intelligent System Monitoring optional Initialize coprocessor if present Disable onboard Super I O ports and IRQs optional Late POST device initialization Detect and install external RS232 ports Configure non MCD IDE controllers Detect and install external parallel ports Initialize PC compatible PnP ISA devices Re initialize onboard ports Configure Motherboard Configurable Devices optional Initialize BIOS Data Area Enable Non Maskable Interrupts NMIs Initialize Extended BIOS Data Area Test and initialize PS 2 mouse Initialize floppy controller Determine number of ATA drives optional Initialize hard disk controllers Initialize local bus hard disk controllers Jump to UserPatch2 Build MPTABLE for multi processor boards Install CD ROM for boot Clear huge ES segment register Fix up Multi Processor table 1 2 Search for option ROMs and shadow if successful One long two short beeps on checksum failure B 3 SUPER PDSBM LN1 PDSBM LN2 PDSBM LN2 User s Manual POST Code Description 99h Check for SMART Drive optional 9Ch Set up Power Management 9Dh Initialize security engine optional 9Eh Enable hardware interrupts 9Fh Determine number of ATA and SCSI drives AOh Set time of day A2h Check key lock A4h Initialize typematic rate A8h Erase lt ESC gt prompt AAh Scan for lt ESC g
84. ses eot eter da ki aan ya k s kya za ya ani d k awana 2 19 PCI PCI Exp Slots to SMB 2 20 2 8 Onboard Indicators 2 21 GLAN LED INGIGAIONS 2 22 VRM Overheat ener enne 2 22 POST Code LED Indicators ctt enhn 2 22 2 9 Floppy Drive and IDE Hard Drive Connections 2 23 Floppy nae dakan ki dah nala dlsan aa ERE da xa ka G RA 2 23 IDE ya Va k Dank ka W Brwa ka 2 24 Chapter 3 Troubleshooting 3 1 Troubleshooting 3 1 Before PoWer Ok xlas l ny n eE ca cee Waa aie yay n kena e kelan d sek k 3 1 Ne 3 1 60 daka 3 1 Memory 5 555 cederet heute yeka ta iei ec ees 3 2 Losing System s Setup Configuration 3 2 3 2 Technical Support Procedures 3 2 3 3 Frequently Asked Questions 3 3 3 4 Returning Merchandise for 3 4 SUPER PDSBM LN1 PDSBM LN2 PDSBM
85. sks Select Disks Strip Size 128 Capacity xxx Create Volune Enter a string between 1 and 16 characters in length that can be used to uniquely identify the RAID volume This nane is case sensitive and can not contain special characters b Specify a name for the RAID 10 set and press lt Enter gt c When RAID Level item is highlighted use the lt Up Arrow gt lt Down Arrow gt keys to select RAID 10 RAID1 RAIDO and hit lt Enter gt d When the Stripe Size is highlighted use the lt Up Arrow gt lt Down Arrow gt keys to select the stripe size from 4 KB to 128 KB for your RAID 10 and hit lt Enter gt The default setting is 6 4KB Note For a server please use a lower stripe size and for a multimedia system use a higher stripe size e When the RAID Volume Capacity item is highlighted enter your RAID volume capacity and hit lt Enter gt The default setting is the maximum capacity allowed f Press lt Enter gt when the Create Volume item is highlighted A warning message displays g When asked Are you sure you want to create this volume Y N press Y to create the RAID volume or type N to go back to the Create Volume menu C 6 Appendix Intel HostRAID Installation Guidelines Creating a RAID 5 Set Parity a Select Create RAID Volume from the main menu and press the lt Enter gt key The following screen will appear Intel R Matrix Storage Manager option ROM 5 1 18
86. soon as the user hits the power button If set to 4 Second Override the system will be powered on or off when the user presses the power button more than 4 seconds The options are Instant Off and 4 Second Override Resume On Modem Ring Select On to wake your system up when an incoming call is received by your modem The options are On and Off Resume On PME Select On to wake your system up from the PME The options are On and Off Power Loss Control This setting allows you to decide how the system will react when power returns after a sudden power loss The options are Stay Off Power On and Last State Watch Dog Select Enabled to automatically reset the system if the system is not active for more than 5 minutes The options are Enabled and Disabled Summary Screen This setting allows you to Enable or Disable the summary screen which displays the system configuration settings during bootup gt Advanced Processor Options Access the submenu to make changes to the following settings CPU Speed This item indicates the speeds of the processor s installed on the motherboard Frequency Ratio Available when supported by the CPU The feature allows the user to set the internal frequency multiplier for the CPU The options are Default and x9 Frequency High Ratio Available when supported by the CPU The feature allows the user to set high ratio internal frequency multiplier for Intel SpeedStep CPUs The o
87. still recommend that you use Supero Doctor II SUPER PDSBM LN1 PDSBM LN2 PDSBM LN2 User s Manual Notes
88. submenu 4 2 Chapter 4 BIOS Main BIOS Setup Menu System Time Main Setup Features System Time To set the system date and time key in the correct information in the appropriate fields Then press the lt Enter gt key to save the data System Date Using the arrow keys highlight the month day and year fields and enter the correct data Press the lt Enter gt key to save the data BIOS Date The item displays the date that the BIOS was built Legacy Diskette A This setting allows the user to set the type of floppy disk drive installed as diskette A The options are Disabled 360Kb 5 25 in 1 2MB 5 25 in 720Kb 3 5 in 1 44 1 25MB 3 5 in and 2 88MB 3 5 in Parallel ATA This setting allows the user to enable or disable the function of the Parallel ATA The options are Disabled and Enabled SUPER PDSBM LN1 PDSBM LN2 PDSBM LN2 User s Manual Serial ATA This setting allows the user to enable or disable the function of the Serial ATA The options are Disabled and Enabled Native Mode Operation This setting allows the user to configure the native ATA mode settings The options are Parallel ATA Serial ATA Both and Auto Note Some operating systems might not support Native Mode SATA Controller Mode Select Compatible to allow the SATA and PATA drives to be automatically detected and be placed in the Legacy Mode by the BIOS Select Enhanced to allow the SATA and PATA drives to be to be automatic
89. t key stroke ACh Enter SETUP AEh Clear Boot flag BOh Check for errors B1h Inform RomPilot about the end of POST optional B2h POST done prepare to boot operating system B4h 1 One short beep before boot B5h Terminate QuietBoot optional B6h Check password optional B7h Initialize ACPI BIOS and PPM Structures B9h Prepare Boot BAh Initialize SMBIOS BCh Clear parity checkers BDh Display MultiBoot menu BEh Clear screen optional BFh Check virus and backup reminders COh Try to boot with INT 19 Cth Initialize POST Error Manager PEM C2h Initialize error logging C3h Initialize error display function C4h Initialize system error flags C6h Console redirection init C7h Unhook INT 10h if console redirection enabled C8h Force check optional C9h Extended ROM checksum optional CDh Reclaim console redirection vector B 4 Appendix BIOS POST Codes POST Code Description D2h D4h D8h DEh Unknown interrupt Check Intel Branding string Alert Standard Format initialization Log error if micro code not updated properly The following are for boot block in Flash ROM POST Code Description EOh E1h E2h E3h E4h E5h E6h E7h E8h E9h EAh EBh ECh EDh EEh EFh FOh F1h F2h F3h F4h F5h F6h F7h Initialize the chipset Initialize the bridge Initialize the CPU Initialize system timer Initialize system I O Check force recovery boot Checksum BIOS ROM Go to BIOS Set Huge Segment Initialize
90. t PCB Revision available at the time of publishing of the manual The motherboard you ve received may or may not look exactly the same as the graphics shown in this manual 1 3 SUPER PDSBM LN1 PDSBM LN2 PDSBM LN2 User s Manual Motherboard Layout not drawn to scale 3 E 8 3 ai Fan1 P 8 24 Pin ATX PWR A u 8 pin PWR 5 t lo amp E N Super I O fa MS gt fo 8 1 1 1 10 00 1000 SN Na CE aC Processor Intel 946GZ LAN CTRL HERE North Bridge ui 8 N Z 5 8 N 2 DIMM A gt e 8 B 3 DIMM B a N u 222 2 JPL2 l Eo Z 4 E Slot 6 PCI E x4 in x8 slot Slot 6 Expansion PCI 33 MHz o HERERNE HINE Battery Q i LES ICH7R E JBT1 e Slot 5 PCI 33 MHz n 2 c nao 2 21 South Bridge amp En JP3 UH DE ey i Au BIOS 2 USB 7 8 8 4 USB 5 5 A gt 0886 E I SATAT SATA3 Ur soi l S S 5 2 gt _I SATA2_ Important Notes 1 the User Jumpers not indicated are for testing only e See Chapter 2 for detailed information on jumpers I O ports and JF1 front panel connections indicates the location of Pin 1 L
91. ternal modem ring on can only be used with an ATX 2 01 or above compliant power supply 1 5 Power Supply As with all computer products a stable power source is necessary for proper and reliable operation It is even more important for processors that have high CPU clock rates of 1 GHz and faster The SUPER PDSBM LN1 PDSBM LN2 PDSBM LN2 accommodates 12V ATX power supplies Although most power supplies generally meet the specifications required by the CPU some are inadequate A 2 Amp of current supply on a 5V Standby rail is strongly recommended It is strongly recommended that you use a high quality power supply that meets 12V ATX power supply Specification 1 1 or above It is also required that the 12V 8 pin power connection J41 be used for adequate power supply In areas where noisy power transmission is present you may choose to install a line filter to shield the computer from noise It is recommended that you also install a power surge protector to help avoid problems caused by power surges SUPER PDSBM LN1 PDSBM LN2 PDSBM LN2 User s Manual 1 6 Super I O The disk drive adapter functions of the Super I O chip include a floppy disk drive controller that is compatible with industry standard 82077 765 a data separator write pre compensation circuitry decode logic data rate selection a clock genera tor drive interface control logic and interrupt and DMA logic The wide range of functions integrated onto the Super I O g
92. tial display when your 3 2 Chapter 3 Troubleshooting system first boots up System configuration An example of a Technical Support form is on our web site at http www supermicro com support contact cfm 4 Distributors For immediate assistance please have your account number ready when placing a call to our technical support department We can be reached by e mail at support supermicro com by phone at 408 503 8000 option 2 or by fax at 408 503 8019 3 3 Frequently Asked Questions Question What type of memory does my motherboard support Answer The PDSBM LN1 PDSBM LN2 PDSBM LN2 supports unbuffered DDR2 533 667MHz memory modules See Section 2 4 for details on installing memory Question How do update my BIOS Answer We do not recommended that you upgrade your BIOS if you are not ex periencing problems with your system Updated BIOS files are located on our web site at http www supermicro com support bios Please check our BIOS warning messages and the information on how to update your BIOS on our web site Also check the current BIOS revision and make sure it is newer than your current BIOS before downloading Select your mainboard model and download the BIOS file to your computer Unzip the BIOS update file and follow the readme txt to flash the BIOS Question What s on the CD that came with my motherboard Answer The supplied compact disc has quite a few drivers and programs that will greatly e
93. toring features of the PDSBM LN1 PDSBM LN2 PDSBM LN2 The motherboard has an onboard System Hardware Monitor chip that supports PC health monitoring Recovery from AC Power Loss BIOS provides a setting for you to determine how the system will respond when AC power is lost and then restored to the system You can choose for the system to remain powered off in which case you must hit the power switch to turn it back on or for it to automatically return to a power on state See the Power Lost Con trol setting in the BIOS chapter of this manual to change this setting The default setting is Last State Onboard Voltage Monitors for the CPU Core Chipset Voltage Memory Voltage 1 8V 3 3V 3 3V standby 5V 5V Standby Vbat and 12V The onboard voltage monitor will scan these voltages continuously Once a voltage becomes unstable it will give a warning or send an error message to the screen Users can adjust the voltage thresholds to define the sensitivity of the voltage monitor by using SD III Fan Status Monitor with Software The PC health monitor can check the RPM status of the cooling fans via Supero Doctor III CPU Overheat LED and Control This feature is available when the user enables the CPU overheat warning function in the BIOS This allows the user to define an overheat temperature When this temperature reaches the pre defined threshold the CPU thermal trip feature will be activated and it will send a signal to the Speake
94. ut if the fixed disk type is correctly identified Stuck key Stuck key on keyboard Keyboard error Keyboard not working Keyboard Controller Failed Keyboard controller failed test May require replacing keyboard controller Keyboard locked Unlock key switch Unlock the system to proceed Monitor type does not match CMOS Run SETUP Monitor type not correctly identified in Setup Shadow Ram Failed at offset nnnn Shadow RAM failed at offset nnnn of the 64k block at which the error was de tected System RAM Failed at offset nnnn System RAM failed at offset nnnn of in the 64k block at which the error was de tected Extended RAM Failed at offset nnnn Extended memory not working or not con figured properly at offset nnnn System battery is dead Replace and run SETUP The CMOS clock battery indicator shows the battery is dead Replace the battery and run Setup to reconfigure the system A 1 SUPERO PDSBM LN1 PDSBM LN2 PDSBM LN2 User s Manual System CMOS checksum bad Default configuration used System CMOS has been corrupted or modified incorrectly perhaps by an application program that changes data stored in CMOS The BIOS installed Default Setup Values If you do not want these values enter Setup and enter your own values If the error persists check the system battery or contact your dealer System timer error The timer test failed Requires repair of system board Real time clock error Real Time Clock fa

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